Psyllid ID: psy590

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MSSSTVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRIDLSMPSAYRRTMA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEccccccccccccccccccccccHHHHccccccccccccccccccEEEEEccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEEEEccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHcc
Coil and Loop (DISEMBL)
mssstvqcalpgtakvprpcqsdldcldaeacysgqcEDLCAIAslcapsakchvvkhrpvctcpqgyegnpatkcylpnplgcvsneecasteacinsqcqkpcavhspcapnavcinknhatdcsclegfqgngfvgclpvrnyqpicqynedcppdklcdrlnricinpcqedscgehaicipknhgidcqcqsghqgnpYIACLSELICLChlyteepwhrlpmperasgqpvhCVLVRIdlsmpsayrrtma
Flexible Loop (DISEMBL)
mssstvqcalpgtakvprpcqSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRIDlsmpsayrrtma
Low Complexity Region (SEG)
MSSSTVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRIDLSMPSAYRRTMA
Disordered region (IsUnstruct)
******************PCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRIDL***********
Disordered Region (DISOPRED)
MSSSTVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRIDLSMPSAYRRT**
Disordered Region (DISEMBL)
********ALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRIDLSMPSAYRRTMA
Disordered Region (DISPRO)
****TVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRIDLSMPS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSTVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRIDLSMPSAYRRTMA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q923X1	739	EGF, latrophilin seven tr	yes	N/A	0.435	0.151	0.301	3e-06
Q9ESC1	738	EGF, latrophilin and seve	yes	N/A	0.435	0.151	0.301	5e-06
Q04721	2471	Neurogenic locus notch ho	yes	N/A	0.715	0.074	0.278	4e-05
O35516	2470	Neurogenic locus notch ho	no	N/A	0.715	0.074	0.278	4e-05
Q9QW30	2471	Neurogenic locus notch ho	no	N/A	0.715	0.074	0.273	0.0002

>sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane domain-containing protein 1 OS=Mus musculus GN=Eltd1 PE=2 SV=3

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 58/156 (37%), Gaps = 44/156 (28%)

Query: 47  CAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCA 106
           C P+AKC V      C C QGY GN  T C                       +    C+
Sbjct: 27  CLPNAKCEVHNGVEACFCSQGYSGNGVTIC-----------------------EDIDECS 63

Query: 107 VHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPD-KLCDRL 165
             S C  +AVC N N    C C EG              YQ     ++  P D   C   
Sbjct: 64  ESSVCGDHAVCENVNGGFSCFCREG--------------YQTATGKSQFTPNDGSYCQD- 108

Query: 166 NRICINPCQEDS-CGEHAICIPKNHGIDCQCQSGHQ 200
               I+ C E S CG+HA+C   N G  C C+ G+Q
Sbjct: 109 ----IDECSESSVCGDHAVCENVNGGFSCFCREGYQ 140

Could be involved in cardiac development.
Mus musculus (taxid: 10090)

>sp|Q9ESC1|ELTD1_RAT EGF, latrophilin and seven transmembrane domain-containing protein 1 OS=Rattus norvegicus GN=Eltd1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 58/156 (37%), Gaps = 44/156 (28%)

Query: 47  CAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCA 106
           C P+AKC V+     C C  GY GN  T         C   +EC  T             
Sbjct: 26  CLPNAKCEVLDEVAACFCSTGYTGNGITI--------CEDVDECNET------------- 64

Query: 107 VHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPD-KLCDRL 165
             S C  +AVC N N    C C+EG              YQ      +  P D   C   
Sbjct: 65  --SVCGDHAVCENTNGGFSCFCVEG--------------YQTSTGKTQFTPNDGSYCQD- 107

Query: 166 NRICINPCQEDS-CGEHAICIPKNHGIDCQCQSGHQ 200
               ++ C E S CG+HA+C   N G  C C  G+Q
Sbjct: 108 ----VDECNETSVCGDHAVCENTNGGFSCFCVEGYQ 139

Could be involved in cardiac development.

Rattus norvegicus (taxid: 10116)

>sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 39/223 (17%)

Query: 11  PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHV--VKHRPVCTCPQGY 68
           PG+  + R       C + +A      +D C I++ C   A C    +  + +CTCPQGY
Sbjct: 349 PGSTCIDRVASFSCMCPEGKAGLLCHLDDAC-ISNPCHKGALCDTNPLNGQYICTCPQGY 407

Query: 69  EGNPATK----CYLPNPLGCVSNEECASTEACINSQCQKPCAV----------HS-PCAP 113
           +G   T+    C + N   C    +C +T+   + +C K  A           HS PC  
Sbjct: 408 KGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQN 467

Query: 114 NAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNR------ 167
           +A C++K     C C+ GF+G   V C    N    CQ N      +  D++NR      
Sbjct: 468 DATCLDKIGGFTCLCMPGFKG---VHCELEINE---CQSNPCVNNGQCVDKVNRFQCLCP 521

Query: 168 ---------ICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
                    I I+ C    C   A CI   +G +CQC +G  G
Sbjct: 522 PGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTG 564

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). Involved in bone remodeling and homeostasis. In collaboration with RELA/p65 enhances NFATc1 promoter activity and positively regulates RANKL-induced osteoclast differentiation.

Homo sapiens (taxid: 9606)

>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus musculus GN=Notch2 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 39/223 (17%)

Query: 11  PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHV--VKHRPVCTCPQGY 68
           PG+  + R       C + +A      +D C I++ C   A C    +  + +CTCPQGY
Sbjct: 347 PGSTCIDRVASFSCLCPEGKAGLLCHLDDAC-ISNPCHKGALCDTNPLNGQYICTCPQGY 405

Query: 69  EGNPATK----CYLPNPLGCVSNEECASTEACINSQCQKPCAV----------HS-PCAP 113
           +G   T+    C + N   C    +C +T+   + +C K  A           HS PC  
Sbjct: 406 KGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQN 465

Query: 114 NAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNR------ 167
           +A C++K     C C+ GF+G   V C    N    CQ N      +  D++NR      
Sbjct: 466 DATCLDKIGGFTCLCMPGFKG---VHCELEVNE---CQSNPCVNNGQCVDKVNRFQCLCP 519

Query: 168 ---------ICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
                    I I+ C    C   A CI   +G +CQC +G  G
Sbjct: 520 PGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTG 562

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation. In collaboration with RELA/p65 enhances NFATc1 promoter activity and positively regulates RANKL-induced osteoclast differentiation.

Mus musculus (taxid: 10090)

>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=Rattus norvegicus GN=Notch2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 91/223 (40%), Gaps = 39/223 (17%)

Query: 11  PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHV--VKHRPVCTCPQGY 68
           PG+  + R       C + +A      +D C I++ C   A C    +  + +CTCPQ Y
Sbjct: 349 PGSTCIDRVASFSCLCPEGKAGLLCHLDDAC-ISNPCHKGALCDTNPLNGQYICTCPQAY 407

Query: 69  EGNPATK----CYLPNPLGCVSNEECASTEACINSQCQKPCAV----------HS-PCAP 113
           +G   T+    C + N   C    +C +T+   + +C K  A           HS PC  
Sbjct: 408 KGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQN 467

Query: 114 NAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNR------ 167
           +A C++K     C C+ GF+G   V C    N    CQ N      +  D++NR      
Sbjct: 468 DATCLDKIGGFTCLCMPGFKG---VHCELEVNE---CQSNPCVNNGQCVDKVNRFQCLCP 521

Query: 168 ---------ICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
                    I I+ C    C   A CI   +G +CQC +G  G
Sbjct: 522 PGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTG 564

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
328714521	16577	PREDICTED: hypothetical protein LOC10016	0.754	0.011	0.694	6e-77
270013391	21117	hypothetical protein TcasGA2_TC011986 [T	0.754	0.009	0.640	3e-72
157133855	5644	hypothetical protein AaeL_AAEL012910 [Ae	0.754	0.034	0.595	6e-67
386769088	15105	dumpy, isoform J [Drosophila melanogaste	0.782	0.013	0.622	3e-66
386769086	15638	dumpy, isoform I [Drosophila melanogaste	0.782	0.012	0.622	4e-66
442625928	19560	dumpy, isoform AA [Drosophila melanogast	0.782	0.010	0.622	1e-65
442625906	20710	dumpy, isoform P [Drosophila melanogaste	0.782	0.009	0.622	1e-65
442625918	20404	dumpy, isoform V [Drosophila melanogaste	0.782	0.009	0.622	1e-65
442625916	21657	dumpy, isoform U [Drosophila melanogaste	0.782	0.009	0.622	1e-65
442625904	22743	dumpy, isoform O [Drosophila melanogaste	0.782	0.008	0.622	2e-65

>gi|328714521|ref|XP_003245382.1| PREDICTED: hypothetical protein LOC100166039 [Acyrthosiphon pisum]

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 165/203 (81%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PGTAK P+ C+SD +CLD+EACY GQCE+LC+ +++CAP+AKCHV+KHRPVC+CP GYEG
Sbjct: 3965 PGTAKKPQVCESDTECLDSEACYMGQCENLCSFSTVCAPNAKCHVIKHRPVCSCPPGYEG 4024

Query: 71   NPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLE 130
            NPATKCY P  L C +N +C + E CI   CQ  C VH+PCA NA CIN  H  DCSC+E
Sbjct: 4025 NPATKCYQPKLLTCNTNNDCTNGEVCIQQICQNQCNVHNPCAQNAACINTAHGVDCSCVE 4084

Query: 131  GFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHG 190
            GFQGNGFVGCLPVR+Y+PICQYNEDCPPDKLCDRLNR+CINPC EDSCGE+A C P NHG
Sbjct: 4085 GFQGNGFVGCLPVRSYKPICQYNEDCPPDKLCDRLNRVCINPCAEDSCGENAECYPVNHG 4144

Query: 191  IDCQCQSGHQGNPYIACLSELIC 213
             +C+C  GHQGNPYI+C S   C
Sbjct: 4145 TECRCLQGHQGNPYISCASVTGC 4167

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013391|gb|EFA09839.1| hypothetical protein TcasGA2_TC011986 [Tribolium castaneum]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/203 (64%), Positives = 160/203 (78%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            P  +K P+PC+SD+DCL++EACY   CED CA  + CA +AKC V  HRP+CTCP GYEG
Sbjct: 7021 PPHSKAPKPCESDMDCLESEACYMSLCEDPCAFTNACADTAKCQVKMHRPICTCPMGYEG 7080

Query: 71   NPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLE 130
            NPA KC+  + + C +N +C  TEACI   CQ+PC VH+PCA NAVC+N NH +DCSC E
Sbjct: 7081 NPAVKCFKSSTISCTNNNDCPLTEACIGHACQRPCDVHNPCAQNAVCVNTNHGSDCSCAE 7140

Query: 131  GFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHG 190
            GFQGNG+VGC+PV +Y+PICQYNEDCPP+KLCDRLNR+CINPC EDSCGE+A C+PK+HG
Sbjct: 7141 GFQGNGYVGCVPVHDYKPICQYNEDCPPNKLCDRLNRMCINPCFEDSCGENAECLPKDHG 7200

Query: 191  IDCQCQSGHQGNPYIACLSELIC 213
            I+C+C  G+QGNPY  C   L C
Sbjct: 7201 IECRCLPGYQGNPYTVCDQVLGC 7223

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133855|ref|XP_001663042.1| hypothetical protein AaeL_AAEL012910 [Aedes aegypti] gi|108870666|gb|EAT34891.1| AAEL012910-PA [Aedes aegypti]

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 149/198 (75%), Gaps = 4/198 (2%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PGT K+P PC+SD DC++ E C+   CE+ C    +CAP+A CH   HRP+CTCP G+EG
Sbjct: 2247 PGTPKIPEPCKSDADCIETEVCFMEACENPCLFDGVCAPTATCHAKMHRPICTCPPGHEG 2306

Query: 71   NPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLE 130
            NP  KC    P+ C SN+EC   EAC+ + C++PC V +PCAPNAVCIN+NH ++CSC+E
Sbjct: 2307 NPTIKCTPLEPIQCTSNDECPLMEACVGNVCRRPCDVKNPCAPNAVCINRNHGSECSCIE 2366

Query: 131  GFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHG 190
            G+ GNGFV C P      +CQYNEDCPP+KLCDRLNR+CINPCQEDSCGE+A C P+NHG
Sbjct: 2367 GYHGNGFVACQPGS----VCQYNEDCPPEKLCDRLNRVCINPCQEDSCGENADCFPRNHG 2422

Query: 191  IDCQCQSGHQGNPYIACL 208
            I+C+C+SG  GN YI C+
Sbjct: 2423 IECRCRSGFSGNAYIECV 2440

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386769088|ref|NP_001245876.1| dumpy, isoform J [Drosophila melanogaster] gi|383291324|gb|AFH03552.1| dumpy, isoform J [Drosophila melanogaster]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 147/204 (72%), Gaps = 3/204 (1%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PG+ K P PCQS+ DC+++EACY G C+D C  A +CA +AKC    HRPVCTCPQG+EG
Sbjct: 8476 PGSPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEG 8535

Query: 71   NPATKCYLP-NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCL 129
            NP  KC      + C  + +C  TEACIN  CQ PC VH PCA NAVCIN NHA DCSC 
Sbjct: 8536 NPMVKCVTTQTSIECTDDSDCGVTEACINQLCQHPCDVHDPCATNAVCINSNHAADCSCA 8595

Query: 130  EGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH 189
            +GFQGNGFVGC P R++  +CQYNEDCPP KLCDRLNR CINPCQEDSCGE+A CIP NH
Sbjct: 8596 DGFQGNGFVGCQPARSH--VCQYNEDCPPTKLCDRLNRRCINPCQEDSCGENAECIPVNH 8653

Query: 190  GIDCQCQSGHQGNPYIACLSELIC 213
            G +C+C  G  GN Y+ CL    C
Sbjct: 8654 GTECRCLPGFLGNAYVQCLPSQGC 8677

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386769086|ref|NP_001245875.1| dumpy, isoform I [Drosophila melanogaster] gi|383291323|gb|AFH03551.1| dumpy, isoform I [Drosophila melanogaster]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 147/204 (72%), Gaps = 3/204 (1%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PG+ K P PCQS+ DC+++EACY G C+D C  A +CA +AKC    HRPVCTCPQG+EG
Sbjct: 8476 PGSPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEG 8535

Query: 71   NPATKCYLP-NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCL 129
            NP  KC      + C  + +C  TEACIN  CQ PC VH PCA NAVCIN NHA DCSC 
Sbjct: 8536 NPMVKCVTTQTSIECTDDSDCGVTEACINQLCQHPCDVHDPCATNAVCINSNHAADCSCA 8595

Query: 130  EGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH 189
            +GFQGNGFVGC P R++  +CQYNEDCPP KLCDRLNR CINPCQEDSCGE+A CIP NH
Sbjct: 8596 DGFQGNGFVGCQPARSH--VCQYNEDCPPTKLCDRLNRRCINPCQEDSCGENAECIPVNH 8653

Query: 190  GIDCQCQSGHQGNPYIACLSELIC 213
            G +C+C  G  GN Y+ CL    C
Sbjct: 8654 GTECRCLPGFLGNAYVQCLPSQGC 8677

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625928|ref|NP_001260042.1| dumpy, isoform AA [Drosophila melanogaster] gi|440213327|gb|AGB92578.1| dumpy, isoform AA [Drosophila melanogaster]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 147/204 (72%), Gaps = 3/204 (1%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PG+ K P PCQS+ DC+++EACY G C+D C  A +CA +AKC    HRPVCTCPQG+EG
Sbjct: 8476 PGSPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEG 8535

Query: 71   NPATKCYLP-NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCL 129
            NP  KC      + C  + +C  TEACIN  CQ PC VH PCA NAVCIN NHA DCSC 
Sbjct: 8536 NPMVKCVTTQTSIECTDDSDCGVTEACINQLCQHPCDVHDPCATNAVCINSNHAADCSCA 8595

Query: 130  EGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH 189
            +GFQGNGFVGC P R++  +CQYNEDCPP KLCDRLNR CINPCQEDSCGE+A CIP NH
Sbjct: 8596 DGFQGNGFVGCQPARSH--VCQYNEDCPPTKLCDRLNRRCINPCQEDSCGENAECIPVNH 8653

Query: 190  GIDCQCQSGHQGNPYIACLSELIC 213
            G +C+C  G  GN Y+ CL    C
Sbjct: 8654 GTECRCLPGFLGNAYVQCLPSQGC 8677

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625906|ref|NP_001260031.1| dumpy, isoform P [Drosophila melanogaster] gi|440213316|gb|AGB92567.1| dumpy, isoform P [Drosophila melanogaster]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 147/204 (72%), Gaps = 3/204 (1%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PG+ K P PCQS+ DC+++EACY G C+D C  A +CA +AKC    HRPVCTCPQG+EG
Sbjct: 8476 PGSPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEG 8535

Query: 71   NPATKCYLP-NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCL 129
            NP  KC      + C  + +C  TEACIN  CQ PC VH PCA NAVCIN NHA DCSC 
Sbjct: 8536 NPMVKCVTTQTSIECTDDSDCGVTEACINQLCQHPCDVHDPCATNAVCINSNHAADCSCA 8595

Query: 130  EGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH 189
            +GFQGNGFVGC P R++  +CQYNEDCPP KLCDRLNR CINPCQEDSCGE+A CIP NH
Sbjct: 8596 DGFQGNGFVGCQPARSH--VCQYNEDCPPTKLCDRLNRRCINPCQEDSCGENAECIPVNH 8653

Query: 190  GIDCQCQSGHQGNPYIACLSELIC 213
            G +C+C  G  GN Y+ CL    C
Sbjct: 8654 GTECRCLPGFLGNAYVQCLPSQGC 8677

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625918|ref|NP_001260037.1| dumpy, isoform V [Drosophila melanogaster] gi|440213322|gb|AGB92573.1| dumpy, isoform V [Drosophila melanogaster]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 147/204 (72%), Gaps = 3/204 (1%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PG+ K P PCQS+ DC+++EACY G C+D C  A +CA +AKC    HRPVCTCPQG+EG
Sbjct: 5931 PGSPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEG 5990

Query: 71   NPATKCYLP-NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCL 129
            NP  KC      + C  + +C  TEACIN  CQ PC VH PCA NAVCIN NHA DCSC 
Sbjct: 5991 NPMVKCVTTQTSIECTDDSDCGVTEACINQLCQHPCDVHDPCATNAVCINSNHAADCSCA 6050

Query: 130  EGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH 189
            +GFQGNGFVGC P R++  +CQYNEDCPP KLCDRLNR CINPCQEDSCGE+A CIP NH
Sbjct: 6051 DGFQGNGFVGCQPARSH--VCQYNEDCPPTKLCDRLNRRCINPCQEDSCGENAECIPVNH 6108

Query: 190  GIDCQCQSGHQGNPYIACLSELIC 213
            G +C+C  G  GN Y+ CL    C
Sbjct: 6109 GTECRCLPGFLGNAYVQCLPSQGC 6132

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625916|ref|NP_001260036.1| dumpy, isoform U [Drosophila melanogaster] gi|440213321|gb|AGB92572.1| dumpy, isoform U [Drosophila melanogaster]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 147/204 (72%), Gaps = 3/204 (1%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PG+ K P PCQS+ DC+++EACY G C+D C  A +CA +AKC    HRPVCTCPQG+EG
Sbjct: 8476 PGSPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEG 8535

Query: 71   NPATKCYLP-NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCL 129
            NP  KC      + C  + +C  TEACIN  CQ PC VH PCA NAVCIN NHA DCSC 
Sbjct: 8536 NPMVKCVTTQTSIECTDDSDCGVTEACINQLCQHPCDVHDPCATNAVCINSNHAADCSCA 8595

Query: 130  EGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH 189
            +GFQGNGFVGC P R++  +CQYNEDCPP KLCDRLNR CINPCQEDSCGE+A CIP NH
Sbjct: 8596 DGFQGNGFVGCQPARSH--VCQYNEDCPPTKLCDRLNRRCINPCQEDSCGENAECIPVNH 8653

Query: 190  GIDCQCQSGHQGNPYIACLSELIC 213
            G +C+C  G  GN Y+ CL    C
Sbjct: 8654 GTECRCLPGFLGNAYVQCLPSQGC 8677

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625904|ref|NP_001260030.1| dumpy, isoform O [Drosophila melanogaster] gi|440213315|gb|AGB92566.1| dumpy, isoform O [Drosophila melanogaster]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 147/204 (72%), Gaps = 3/204 (1%)

Query: 11   PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
            PG+ K P PCQS+ DC+++EACY G C+D C  A +CA +AKC    HRPVCTCPQG+EG
Sbjct: 8270 PGSPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEG 8329

Query: 71   NPATKCYLP-NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCL 129
            NP  KC      + C  + +C  TEACIN  CQ PC VH PCA NAVCIN NHA DCSC 
Sbjct: 8330 NPMVKCVTTQTSIECTDDSDCGVTEACINQLCQHPCDVHDPCATNAVCINSNHAADCSCA 8389

Query: 130  EGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH 189
            +GFQGNGFVGC P R++  +CQYNEDCPP KLCDRLNR CINPCQEDSCGE+A CIP NH
Sbjct: 8390 DGFQGNGFVGCQPARSH--VCQYNEDCPPTKLCDRLNRRCINPCQEDSCGENAECIPVNH 8447

Query: 190  GIDCQCQSGHQGNPYIACLSELIC 213
            G +C+C  G  GN Y+ CL    C
Sbjct: 8448 GTECRCLPGFLGNAYVQCLPSQGC 8471

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
FB|FBgn0053196	22	dp "dumpy" [Drosophila melanog	0.782	9.136	0.622	3.3e-73
RGD|1303282	1961	Notch4 "notch 4" [Rattus norve	0.700	0.091	0.276	1.3e-09
RGD|1596104	219	LOC690400 "hypothetical protei	0.727	0.853	0.296	2.2e-09
UNIPROTKB|F1M294	202	LOC680396 "Protein LOC680396"	0.688	0.876	0.276	2.9e-09
RGD|2319481	137	LOC100361793 "keratin associat	0.474	0.890	0.296	3.6e-09
MGI|MGI:3650326	502	Krtap16-1 "keratin associated	0.634	0.324	0.298	3.7e-09
RGD|1583084	217	LOC687622 "hypothetical protei	0.715	0.847	0.295	4.1e-09
UNIPROTKB|G5E9R7	235	KRTAP4-16P "HCG2042993" [Homo	0.583	0.638	0.280	8.7e-09
RGD|2318578	493	Krtap16-1 "keratin associated	0.634	0.330	0.298	1.1e-08
RGD|6502238	493	LOC100909661 "putative keratin	0.634	0.330	0.298	1.1e-08

FB|FBgn0053196 dp "dumpy" [Drosophila melanogaster (taxid:7227)]

 Score = 766 (274.7 bits), Expect = 3.3e-73, P = 3.3e-73
 Identities = 127/204 (62%), Positives = 147/204 (72%)

Query:    11 PGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG 70
             PG+ K P PCQS+ DC+++EACY G C+D C  A +CA +AKC    HRPVCTCPQG+EG
Sbjct:  8476 PGSPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEG 8535

Query:    71 NPATKCYLPNP-LGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCL 129
             NP  KC      + C  + +C  TEACIN  CQ PC VH PCA NAVCIN NHA DCSC 
Sbjct:  8536 NPMVKCVTTQTSIECTDDSDCGVTEACINQLCQHPCDVHDPCATNAVCINSNHAADCSCA 8595

Query:   130 EGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH 189
             +GFQGNGFVGC P R++  +CQYNEDCPP KLCDRLNR CINPCQEDSCGE+A CIP NH
Sbjct:  8596 DGFQGNGFVGCQPARSH--VCQYNEDCPPTKLCDRLNRRCINPCQEDSCGENAECIPVNH 8653

Query:   190 GIDCQCQSGHQGNPYIACLSELIC 213
             G +C+C  G  GN Y+ CL    C
Sbjct:  8654 GTECRCLPGFLGNAYVQCLPSQGC 8677

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP

GO:0005578 "proteinaceous extracellular matrix" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IMP

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP

GO:0040005 "chitin-based cuticle attachment to epithelium" evidence=IMP

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

GO:0046331 "lateral inhibition" evidence=IMP

RGD|1303282 Notch4 "notch 4" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 57/206 (27%), Positives = 76/206 (36%)

Query:    19 PCQSDLDCLD---AEAC-----YSGQ-CE-DLCAIASLCAPSAKCHVVKHRPVCTCPQGY 68
             PC     CLD   A  C     ++GQ CE  LC+   LC P  +C   +HR  C CP G 
Sbjct:   594 PCPVGASCLDLPGAFLCLCRPGFTGQLCEVPLCS-PILCQPGQQCQDQEHRAPCLCPDGS 652

Query:    69 EGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCA--VHSPCAPNAVCINKNHATDC 126
              G    +   P   G      C   E     +C+      + +PCA    C  +    +C
Sbjct:   653 PGCVPAEDDCPCHHGHCQRSLCVCNEGWTGPECETELGGCLSTPCAHGGTCHPQPSGYNC 712

Query:   127 SCLEGFQG----NGFVGCL--PVRNYQPICQ-----YNEDCPPDKLCDRLNRICINPCQE 175
             SCL G+ G         C   P  N    C      Y+  CPP        +  ++ C  
Sbjct:   713 SCLAGYTGLTCSEEITACHSGPCLNGGS-CSIHPEGYSCTCPPSHTGPHC-QTAVDHCAS 770

Query:   176 DSCGEHAICIPKNHGIDCQCQSGHQG 201
              SC     C+ K     C C +G QG
Sbjct:   771 ASCLNGGTCMSKPGTFFCHCATGFQG 796

GO:0001569 "patterning of blood vessels" evidence=ISO

GO:0001763 "morphogenesis of a branching structure" evidence=ISO

GO:0001886 "endothelial cell morphogenesis" evidence=IDA

GO:0004872 "receptor activity" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0009790 "embryo development" evidence=ISO

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030879 "mammary gland development" evidence=IEA;ISO

GO:0045446 "endothelial cell differentiation" evidence=IDA

GO:0045602 "negative regulation of endothelial cell differentiation" evidence=ISO

GO:0050793 "regulation of developmental process" evidence=IEA

RGD|1596104 LOC690400 "hypothetical protein LOC690400" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 68/229 (29%), Positives = 85/229 (37%)

Query:     1 MSSSTVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRP 60
             M++ST+       A+     Q D DC ++  C    C   C   S CAP   C      P
Sbjct:     1 MAASTMSVC--SDARTNSSWQVD-DCPES-CCEPCSCAPSCCQPSCCAPC--C-----AP 49

Query:    61 VCTCPQGYEGNPATKCYLPNPLGCVSN----EECASTEACINSQCQKPCAVHSPCA-PNA 115
              C  P     +  T C L  P+ CVS+      C +   C  S CQ  C   SPC  P  
Sbjct:    50 SCCVPSCCHCSAPTPCLLCTPVSCVSSPCCQSSCCTPSCCQQSSCQPACCTCSPCQQPCG 109

Query:   116 V--CINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNED-CPPDKLCDRLNRICINP 172
             V  C         SC         V C PV  Y PIC  +   C     C     +C  P
Sbjct:   110 VTLCCKPVCCVPPSCCVP------VCCRPVC-YTPICSSSSSSCCQPSCC--APPVCCKP 160

Query:   173 CQEDS--CG---EHAICIPKNHGIDCQCQSGHQGN---PYIACLSELIC 213
             C   S  C      A C+P +    C C S  Q N   P  +C+S L+C
Sbjct:   161 CSSLSLLCSPVCRPACCVPTS---SC-CASSCQPNCCRP-ASCVS-LLC 203

GO:0045095 "keratin filament" evidence=IEA

UNIPROTKB|F1M294 LOC680396 "Protein LOC680396" [Rattus norvegicus (taxid:10116)]

 Score = 145 (56.1 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 55/199 (27%), Positives = 69/199 (34%)

Query:     2 SSSTVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPV 61
             S  +  C  P    V   CQ    C     C S  C+  C  +S C PS  C     +P 
Sbjct:     3 SCCSTPCCQPCCC-VSSCCQP---CCQPSCCQSSCCQPSCCQSSCCQPSC-C-----QPS 52

Query:    62 CTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN 121
             C      + +    C  P+         C  +  C  S CQ PC   S C  +  C    
Sbjct:    53 CCQSSCCQPSCCQPCCRPSCCQPCCQSSCCQSSCCQPSCCQ-PCCQPSCCGSS--CCQPC 109

Query:   122 HATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEH 181
               T C C   FQ +    C      QP C  +  C P   C R +  C  PC   SC E 
Sbjct:   110 CQTTC-CRTCFQPSCVSSCCSTPCCQPCCCVSSCCQP---CCRPS--CCQPCCRPSCCES 163

Query:   182 AICIPKNHGIDCQ---CQS 197
             + C P      C+   CQS
Sbjct:   164 SCCQPSCCQPCCRPSCCQS 182

GO:0045095 "keratin filament" evidence=IEA

RGD|2319481 LOC100361793 "keratin associated protein 12-1-like" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 45/152 (29%), Positives = 62/152 (40%)

Query:    32 CYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECA 91
             C S  C+  C ++S C PS  C+V        C       PA  C +P+  GC     C 
Sbjct:     6 CVSSPCQPSCCVSSPCQPS--CYVSSPCQSACC------RPAV-C-IPSS-GCCQ-PSCP 53

Query:    92 STEACINSQCQKPCAVHSPCAPN----AVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQ 147
             +   C++S CQ  C V SPC  +    A+CI   +   C C+        V C P     
Sbjct:    54 TPSCCVSSPCQPSCCVSSPCQSSCCRPAICIPVRYQIAC-CVP-------VSCRPTVCMA 105

Query:   148 PICQYNEDCPPDKLCDRLNRICI-NPCQEDSC 178
             P CQ +  C P   C     +C+ + CQ   C
Sbjct:   106 PSCQ-SSVCVPVS-C---RPVCVTSSCQSSGC 132

GO:0045095 "keratin filament" evidence=IEA

MGI|MGI:3650326 Krtap16-1 "keratin associated protein 16-1" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 57/191 (29%), Positives = 75/191 (39%)

Query:     8 CALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSA----KCHVVKHRPVCT 63
             C  P     P  C +   C     C +  CE  C+ AS C PSA     C  V  RPVC 
Sbjct:   217 CPTPSCC--PSVCSAASSCQPV-GCETSPCEPPCSEASACQPSACMALVCEPVCLRPVC- 272

Query:    64 CPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHA 123
             C QG    P   C  P    CVS+  C  +  C++S CQ  C   SPC P+ VC+     
Sbjct:   273 CVQG----P---CEPP----CVSSS-CQDSSCCVSSICQPVCPEPSPCLPS-VCVPTPCQ 319

Query:   124 TDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAI 183
               C  ++  +    V C P+    P CQ    C P       + IC   C   +    + 
Sbjct:   320 PSCYIVKRCRS---VSCEPISCPSPSCQ-PACCRPGSSA---SAICQPACPPRTFYIPSS 372

Query:   184 CIPKNHGIDCQ 194
             C P    + C+
Sbjct:   373 CKPPCSPVSCR 383

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005882 "intermediate filament" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0045095 "keratin filament" evidence=IEA

RGD|1583084 LOC687622 "hypothetical protein LOC687622" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 68/230 (29%), Positives = 85/230 (36%)

Query:     1 MSSSTVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRP 60
             M++ST+       A+     Q D DC ++  C    C   C   S C PS  C      P
Sbjct:     1 MAASTMSVC--SDARTNSSWQVD-DCPES-CCEPCGCAPSCCQPSCCVPSC-CQSSCCAP 55

Query:    61 VCTCPQGYEGNPATKCYLPNPLGCVSN----EECASTEACINSQCQKPCAVHSPCAPNA- 115
              C  P        T C L  P+ CVS+      C +   C  S CQ  C   SPC P+  
Sbjct:    56 SCCAP--------TPCLLCTPVSCVSSPCCQSSCCTPSCCQQSSCQPACCTSSPCQPSCC 107

Query:   116 --VCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNED--CPPDKLCDRLNRICIN 171
               VC         SC         V C PV    PIC  +    C P   C     +C  
Sbjct:   108 APVCCKPVCCKPPSCCVP------VCCRPVC-CTPICSASSSSCCQPS-CC--APPVCCK 157

Query:   172 PCQEDS--CG---EHAICIPKNHGIDCQCQSGHQGN---PYIACLSELIC 213
             PC   S  C      A C+P +    C C S  Q N   P  +C+S L+C
Sbjct:   158 PCSSLSLLCSPVCRPACCVPTS---SC-CASSCQPNCCRP-ASCVS-LLC 201

GO:0045095 "keratin filament" evidence=IEA

UNIPROTKB|G5E9R7 KRTAP4-16P "HCG2042993" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 48/171 (28%), Positives = 65/171 (38%)

Query:     1 MSSSTVQCALPGT----AKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVV 56
             M SS + C+   +    A  P  C     C     C +  C   C+++S C P   CH V
Sbjct:     1 MCSSKMPCSPSASSLCAASPPNCCHPS--CCQTTCCRTTSCSHSCSVSSCCRPQC-CHSV 57

Query:    57 KHRPVCTCPQGYEGNPA-TKCYLPNPLGCVSN---EECASTEACINSQCQKP-CAVHSPC 111
               +P C  P   +     T C   +P  CVS+    +C  +  C    C  P C + S C
Sbjct:    58 CCQPTCCRPSCCQTTCCRTTCC--HPSCCVSSCCRPQCCHS-VCFQPTCCHPSCCISSSC 114

Query:   112 APNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLC 162
              P+  C   +    C CL    G   V C  V  Y P C  +  CP    C
Sbjct:   115 CPS--CCESSCCCPCCCLRPVCGR--VSC-HVTCYHPTCVIST-CPHPLCC 159

GO:0045095 "keratin filament" evidence=IEA

RGD|2318578 Krtap16-1 "keratin associated protein 16-1" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 57/191 (29%), Positives = 75/191 (39%)

Query:     8 CALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSA----KCHVVKHRPVCT 63
             C  P     P  C +   C   + C S  CE  C+ AS C P+A     C  V  RPVC 
Sbjct:   208 CPTPSCC--PSVCSATSSCQPVD-CESSPCEPPCSEASACQPTACMALVCESVCLRPVC- 263

Query:    64 CPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHA 123
             C QG    P   C  P    C S+  C  +  C++S CQ  C   SPC P+ VC+     
Sbjct:   264 CVQG----P---CEPP----CGSSS-CQDSSCCVSSICQPVCPEPSPCLPS-VCVPSPCQ 310

Query:   124 TDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAI 183
               C  ++  +    V C PV    P CQ    C P       + IC   C   +    + 
Sbjct:   311 PSCYIVKRCRS---VCCEPVSCPSPSCQ-PACCRPGSSA---SAICQPACPPRTFYIPSS 363

Query:   184 CIPKNHGIDCQ 194
             C P    + C+
Sbjct:   364 CKPSCSPVSCR 374

GO:0045095 "keratin filament" evidence=IEA

RGD|6502238 LOC100909661 "putative keratin-associated protein 10-like ENSP00000375147 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 57/191 (29%), Positives = 75/191 (39%)

Query:     8 CALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSA----KCHVVKHRPVCT 63
             C  P     P  C +   C   + C S  CE  C+ AS C P+A     C  V  RPVC 
Sbjct:   208 CPTPSCC--PSVCSATSSCQPVD-CESSPCEPPCSEASACQPTACMALVCESVCLRPVC- 263

Query:    64 CPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHA 123
             C QG    P   C  P    C S+  C  +  C++S CQ  C   SPC P+ VC+     
Sbjct:   264 CVQG----P---CEPP----CGSSS-CQDSSCCVSSICQPVCPEPSPCLPS-VCVPSPCQ 310

Query:   124 TDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAI 183
               C  ++  +    V C PV    P CQ    C P       + IC   C   +    + 
Sbjct:   311 PSCYIVKRCRS---VCCEPVSCPSPSCQ-PACCRPGSSA---SAICQPACPPRTFYIPSS 363

Query:   184 CIPKNHGIDCQ 194
             C P    + C+
Sbjct:   364 CKPSCSPVSCR 374

GO:0045095 "keratin filament" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
KOG1214|consensus	1289		99.61
KOG1219|consensus	4289		99.47
KOG1214|consensus	1289		99.27
KOG1219|consensus	4289		99.23
KOG4289|consensus	2531		98.94
KOG1217|consensus	487		98.75
KOG4289|consensus	2531		98.58
KOG4260|consensus	350		98.53
KOG1217|consensus	487		98.46
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.22
KOG4260|consensus	350		98.05
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.96
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.93
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.91
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.85
KOG1225|consensus	525		97.66
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.5
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.5
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.43
PF12662	24	cEGF: Complement Clr-like EGF-like	97.28
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.22
PF12662	24	cEGF: Complement Clr-like EGF-like	97.08
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.01
smart00181	35	EGF Epidermal growth factor-like domain.	96.91
KOG1225|consensus	525		96.74
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	96.71
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.17
smart00181	35	EGF Epidermal growth factor-like domain.	96.17
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	95.95
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	94.97
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	94.71
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	93.77
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	93.72
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	93.47
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	93.36
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	93.15
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	91.64
KOG1226|consensus	783		91.27
KOG0994|consensus	1758		89.01
KOG1226|consensus	783		88.78
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	88.4
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	83.9
PHA02887	126	EGF-like protein; Provisional	83.55
PF00954	110	S_locus_glycop: S-locus glycoprotein family; Inter	82.76
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	81.29

>KOG1214|consensus

Probab=99.61  E-value=2.9e-15  Score=138.83  Aligned_cols=147  Identities=28%  Similarity=0.669  Sum_probs=118.5

Q ss_pred             ccCC-cCCCCCCCCEeeeCCC-CcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCe
Q psy590           39 DLCA-IASLCAPSAKCHVVKH-RPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAV  116 (257)
Q Consensus        39 ~~C~-~~~~C~~~~~C~~~~g-~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~  116 (257)
                      ++|- ..+.|..++.|....+ .|+|.|..||.|++.         .|.+.++|....              ..|.+++.
T Consensus       693 npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~gdgr---------~c~d~~eca~~~--------------~~CGp~s~  749 (1289)
T KOG1214|consen  693 NPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQGDGR---------NCVDENECATGF--------------HRCGPNSV  749 (1289)
T ss_pred             ccceecCcccCCCccccCCCCcceEEEEeeccCCCCC---------CCCChhhhccCC--------------CCCCCCce
Confidence            5555 3678888889987765 699999999999854         488899998754              78999999


Q ss_pred             eeeCCCceeeeCCCCCccCCC-CCcccCCC---------CCCCCC--------------CCCCCCCCCccCCCCCccCCC
Q psy590          117 CINKNHATDCSCLEGFQGNGF-VGCLPVRN---------YQPICQ--------------YNEDCPPDKLCDRLNRICINP  172 (257)
Q Consensus       117 C~~~~g~~~C~C~~g~~g~~~-~~C~~~~~---------~~~~C~--------------~~~~C~~g~~~~~~~~~~id~  172 (257)
                      |++.+++|.|.|..||...+. -.|..+..         ..+.|.              +.+.|.+||.|++..|.++|+
T Consensus       750 Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvDe  829 (1289)
T KOG1214|consen  750 CINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDVDE  829 (1289)
T ss_pred             eecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccccccc
Confidence            999999999999999864432 22443321         012332              345689999999999999999


Q ss_pred             CCCCCCCCCCEeccCCCCeeeecCCCCccCCCCCccc
Q psy590          173 CQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLS  209 (257)
Q Consensus       173 C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~  209 (257)
                      |.++.|++.++|+|+.++|.|+|.+||.|++.. |.+
T Consensus       830 C~psrChp~A~CyntpgsfsC~C~pGy~GDGf~-CVP  865 (1289)
T KOG1214|consen  830 CSPSRCHPAATCYNTPGSFSCRCQPGYYGDGFQ-CVP  865 (1289)
T ss_pred             cCccccCCCceEecCCCcceeecccCccCCCce-ecC
Confidence            999999999999999999999999999999977 754

>KOG1219|consensus

Probab=99.47  E-value=3.9e-14  Score=141.24  Aligned_cols=110  Identities=31%  Similarity=0.769  Sum_probs=97.1

Q ss_pred             ccCCcCCCCCCCCEeeeCC-CCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCee
Q psy590           39 DLCAIASLCAPSAKCHVVK-HRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVC  117 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C  117 (257)
                      +.|. .++|.+++.|..+. |+|.|.|++-|.|.   .|+       .+++.|..                +||..+++|
T Consensus      3865 d~C~-~npCqhgG~C~~~~~ggy~CkCpsqysG~---~CE-------i~~epC~s----------------nPC~~GgtC 3917 (4289)
T KOG1219|consen 3865 DPCN-DNPCQHGGTCISQPKGGYKCKCPSQYSGN---HCE-------IDLEPCAS----------------NPCLTGGTC 3917 (4289)
T ss_pred             cccc-cCcccCCCEecCCCCCceEEeCcccccCc---ccc-------cccccccC----------------CCCCCCCEE
Confidence            7787 78999999999887 68999999999999   787       56777774                899999999


Q ss_pred             eeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCCCCeeeecCC
Q psy590          118 INKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQS  197 (257)
Q Consensus       118 ~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~g~~~C~C~~  197 (257)
                      +...++|.|.|+.||+|.             .|+..          +     +++|..++|.++|+|+|..|+|.|.|.+
T Consensus      3918 ip~~n~f~CnC~~gyTG~-------------~Ce~~----------G-----i~eCs~n~C~~gg~C~n~~gsf~CncT~ 3969 (4289)
T KOG1219|consen 3918 IPFYNGFLCNCPNGYTGK-------------RCEAR----------G-----ISECSKNVCGTGGQCINIPGSFHCNCTP 3969 (4289)
T ss_pred             EecCCCeeEeCCCCccCc-------------eeecc----------c-----ccccccccccCCceeeccCCceEeccCh
Confidence            999999999999999999             33321          1     8999999999999999999999999999


Q ss_pred             CCccCC
Q psy590          198 GHQGNP  203 (257)
Q Consensus       198 G~~g~~  203 (257)
                      ||.|..
T Consensus      3970 g~~gr~ 3975 (4289)
T KOG1219|consen 3970 GILGRT 3975 (4289)
T ss_pred             hHhccc
Confidence            999987

>KOG1214|consensus

Probab=99.27  E-value=4.3e-11  Score=111.64  Aligned_cols=107  Identities=25%  Similarity=0.658  Sum_probs=85.5

Q ss_pred             ccCCCCCCCCCCC--CCCCCeeccCCCceeeec---------------------cccCCc-CCCCCCCC--EeeeCC-CC
Q psy590            7 QCALPGTAKVPRP--CQSDLDCLDAEACYSGQC---------------------EDLCAI-ASLCAPSA--KCHVVK-HR   59 (257)
Q Consensus         7 ~~~~~~~~c~~~~--C~~~~~C~~~~g~~~C~C---------------------~~~C~~-~~~C~~~~--~C~~~~-g~   59 (257)
                      +-|...++|++.+  |+.++.|+|.+|+|+|+|                     .+.|.. .+.|...+  .|+... +.
T Consensus       729 r~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~  808 (1289)
T KOG1214|consen  729 RNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGST  808 (1289)
T ss_pred             CCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCce
Confidence            4455555677654  999999999999999988                     266773 47787654  455554 46


Q ss_pred             cEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCC
Q psy590           60 PVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFV  138 (257)
Q Consensus        60 ~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~  138 (257)
                      |.|+|.+||.|++.         .|.++|||..                +-|..+++|.++++++.|+|.+||.|++..
T Consensus       809 y~C~CLPGfsGDG~---------~c~dvDeC~p----------------srChp~A~CyntpgsfsC~C~pGy~GDGf~  862 (1289)
T KOG1214|consen  809 YSCACLPGFSGDGH---------QCTDVDECSP----------------SRCHPAATCYNTPGSFSCRCQPGYYGDGFQ  862 (1289)
T ss_pred             EEEeecCCccCCcc---------ccccccccCc----------------cccCCCceEecCCCcceeecccCccCCCce
Confidence            99999999999964         3778899983                779999999999999999999999999754

>KOG1219|consensus

Probab=99.23  E-value=2.1e-11  Score=122.47  Aligned_cols=98  Identities=28%  Similarity=0.700  Sum_probs=87.4

Q ss_pred             CCCCCCCCCCCCeeccCC-Cceeeec------------cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCC
Q psy590           13 TAKVPRPCQSDLDCLDAE-ACYSGQC------------EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLP   79 (257)
Q Consensus        13 ~~c~~~~C~~~~~C~~~~-g~~~C~C------------~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~   79 (257)
                      ++|..+||+++|+|...+ |+|+|.|            ..+|. .+||..+++|+...++|.|.|+.||+|.   +|+..
T Consensus      3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~-snPC~~GgtCip~~n~f~CnC~~gyTG~---~Ce~~ 3940 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCA-SNPCLTGGTCIPFYNGFLCNCPNGYTGK---RCEAR 3940 (4289)
T ss_pred             cccccCcccCCCEecCCCCCceEEeCcccccCccccccccccc-CCCCCCCCEEEecCCCeeEeCCCCccCc---eeecc
Confidence            799999999999999985 6799999            26677 8999999999999999999999999999   88742


Q ss_pred             CCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590           80 NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus        80 ~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                            .++||..                ++|.+++.|+|.+|+|.|.|.+||.|..
T Consensus      3941 ------Gi~eCs~----------------n~C~~gg~C~n~~gsf~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3941 ------GISECSK----------------NVCGTGGQCINIPGSFHCNCTPGILGRT 3975 (4289)
T ss_pred             ------ccccccc----------------ccccCCceeeccCCceEeccChhHhccc
Confidence                  3778874                7899999999999999999999998775

>KOG4289|consensus

Probab=98.94  E-value=1.1e-09  Score=106.95  Aligned_cols=128  Identities=23%  Similarity=0.573  Sum_probs=91.5

Q ss_pred             CCCCCCCCCCCCeeccCCCceeeeccccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCC
Q psy590           13 TAKVPRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECAS   92 (257)
Q Consensus        13 ~~c~~~~C~~~~~C~~~~g~~~C~C~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~   92 (257)
                      +.|...||.+.+.|+.... |.-.-  +-.....  .-..=++..+++.|+|++||+|+   .|+       .++|+|-+
T Consensus      1180 niClrEPCenymkCvsvlr-Fdssa--pf~~s~s--~lfRpi~pvnglrCrCPpGFTgd---~Ce-------TeiDlCYs 1244 (2531)
T KOG4289|consen 1180 NICLREPCENYMKCVSVLR-FDSSA--PFLASDS--VLFRPIHPVNGLRCRCPPGFTGD---YCE-------TEIDLCYS 1244 (2531)
T ss_pred             chhhcchhHHHHhhhhhee-ecccC--ccccccc--eeeeeccccCceeEeCCCCCCcc---ccc-------chhHhhhc
Confidence            4899999999888886531 00000  0000000  00123345578999999999999   777       57888875


Q ss_pred             CCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCC
Q psy590           93 TEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINP  172 (257)
Q Consensus        93 ~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~  172 (257)
                                      .+|.+++.|....|+|.|.|.+||+|.+   |+-.-       .                 .-.
T Consensus      1245 ----------------~pC~nng~C~srEggYtCeCrpg~tGeh---CEvs~-------~-----------------agr 1281 (2531)
T KOG4289|consen 1245 ----------------GPCGNNGRCRSREGGYTCECRPGFTGEH---CEVSA-------R-----------------AGR 1281 (2531)
T ss_pred             ----------------CCCCCCCceEEecCceeEEecCCccccc---eeeec-------c-----------------cCc
Confidence                            7899999999999999999999999995   22110       0                 234


Q ss_pred             CCCCCCCCCCEeccC-CCCeeeecCCC
Q psy590          173 CQEDSCGEHAICIPK-NHGIDCQCQSG  198 (257)
Q Consensus       173 C~~~~C~~~~~C~~~-~g~~~C~C~~G  198 (257)
                      |.+..|.++++|++. .|+|.|.|+.|
T Consensus      1282 CvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1282 CVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred             cccceecCCCEEeecCCCceeccCCCc
Confidence            666779999999987 68899999998

>KOG1217|consensus

Probab=98.75  E-value=2.3e-07  Score=85.00  Aligned_cols=140  Identities=24%  Similarity=0.621  Sum_probs=88.1

Q ss_pred             CEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCC
Q psy590           51 AKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLE  130 (257)
Q Consensus        51 ~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~  130 (257)
                      +.|++..++|.|.|++||.+..   +     ..+.++++|...               ..|.++++|++..+.|.|.|.+
T Consensus       243 ~~c~~~~~~~~C~~~~g~~~~~---~-----~~~~~~~~C~~~---------------~~c~~~~~C~~~~~~~~C~C~~  299 (487)
T KOG1217|consen  243 GTCVNTVGSYTCRCPEGYTGDA---C-----VTCVDVDSCALI---------------ASCPNGGTCVNVPGSYRCTCPP  299 (487)
T ss_pred             CcccccCCceeeeCCCCccccc---c-----ceeeeccccCCC---------------CccCCCCeeecCCCcceeeCCC
Confidence            4555555666666666666652   0     124455555542               2388889999999889999999


Q ss_pred             CCccCCCCCcccCCC-----------CCCCCC-------CCCCCCCCCccCCCCCccC-CCCCCCCCCCCCEecc-CCCC
Q psy590          131 GFQGNGFVGCLPVRN-----------YQPICQ-------YNEDCPPDKLCDRLNRICI-NPCQEDSCGEHAICIP-KNHG  190 (257)
Q Consensus       131 g~~g~~~~~C~~~~~-----------~~~~C~-------~~~~C~~g~~~~~~~~~~i-d~C~~~~C~~~~~C~~-~~g~  190 (257)
                      ||.+.....+.+...           ....|.       +.+.|..++.+  ..|... ++|...++..++.|++ ..++
T Consensus       300 g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g--~~C~~~~~~C~~~~~~~~~~c~~~~~~~  377 (487)
T KOG1217|consen  300 GFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTG--RRCEDSNDECASSPCCPGGTCVNETPGS  377 (487)
T ss_pred             CCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCC--CccccCCccccCCccccCCEeccCCCCC
Confidence            999886411222111           011221       11334444333  334445 4888777888899999 7899


Q ss_pred             eeeecCCCCccC---CCCCcccCccccC
Q psy590          191 IDCQCQSGHQGN---PYIACLSELICLC  215 (257)
Q Consensus       191 ~~C~C~~G~~g~---~~~~C~~~~~C~~  215 (257)
                      |.|.|+.+|.+.   ....+.++++|..
T Consensus       378 ~~c~~~~~~~~~~~~~~~~~~~~~~c~~  405 (487)
T KOG1217|consen  378 YRCACPAGFAGKANGDGVGCEDIDECSG  405 (487)
T ss_pred             eEecCCCccccCCccccccccccccccC
Confidence            999999999873   2234777887754

>KOG4289|consensus

Probab=98.58  E-value=3.7e-07  Score=89.99  Aligned_cols=79  Identities=23%  Similarity=0.613  Sum_probs=60.3

Q ss_pred             cCCCceeeec------------cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCc
Q psy590           28 DAEACYSGQC------------EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEA   95 (257)
Q Consensus        28 ~~~g~~~C~C------------~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~   95 (257)
                      +..++++|+|            +|+|. ..+|.+++.|....|+|+|.|++||+|.   +|+-.     ..-..|.    
T Consensus      1217 ~pvnglrCrCPpGFTgd~CeTeiDlCY-s~pC~nng~C~srEggYtCeCrpg~tGe---hCEvs-----~~agrCv---- 1283 (2531)
T KOG4289|consen 1217 HPVNGLRCRCPPGFTGDYCETEIDLCY-SGPCGNNGRCRSREGGYTCECRPGFTGE---HCEVS-----ARAGRCV---- 1283 (2531)
T ss_pred             cccCceeEeCCCCCCcccccchhHhhh-cCCCCCCCceEEecCceeEEecCCcccc---ceeee-----cccCccc----
Confidence            3445566666            47777 8999999999999999999999999998   77631     1112333    


Q ss_pred             ccCCCccCCCCCCCCCCCCCeeeeCC-CceeeeCCCC
Q psy590           96 CINSQCQKPCAVHSPCAPNAVCINKN-HATDCSCLEG  131 (257)
Q Consensus        96 c~g~~c~~~C~~~~~C~~~~~C~~~~-g~~~C~C~~g  131 (257)
                                  +..|+++++|++.. +++.|.|+.|
T Consensus      1284 ------------pGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1284 ------------PGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred             ------------cceecCCCEEeecCCCceeccCCCc
Confidence                        36789899999754 7888999876

>KOG4260|consensus

Probab=98.53  E-value=8.1e-08  Score=79.65  Aligned_cols=82  Identities=28%  Similarity=0.711  Sum_probs=61.2

Q ss_pred             eCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCCCccc
Q psy590           63 TCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLP  142 (257)
Q Consensus        63 ~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~  142 (257)
                      .|+.||..+         ...|+|+|||...+              .+|.....|+|+.|+|.|...+||.+.       
T Consensus       221 kCkkGW~ld---------e~gCvDvnEC~~ep--------------~~c~~~qfCvNteGSf~C~dk~Gy~~g-------  270 (350)
T KOG4260|consen  221 KCKKGWKLD---------EEGCVDVNECQNEP--------------APCKAHQFCVNTEGSFKCEDKEGYKKG-------  270 (350)
T ss_pred             hhcccceec---------ccccccHHHHhcCC--------------CCCChhheeecCCCceEecccccccCC-------
Confidence            466666655         45688999998764              889988999999999999999888763       


Q ss_pred             CCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC--CCC-CCCCEeccCCCCeeeecCCCCcc
Q psy590          143 VRNYQPICQYNEDCPPDKLCDRLNRICINPCQE--DSC-GEHAICIPKNHGIDCQCQSGHQG  201 (257)
Q Consensus       143 ~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~--~~C-~~~~~C~~~~g~~~C~C~~G~~g  201 (257)
                                                 +|+|..  ..| ..+..|.|..+.|+|+|..|+.-
T Consensus       271 ---------------------------~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~~  305 (350)
T KOG4260|consen  271 ---------------------------VDECQFCADVCASKNRPCMNIDGQYRCVCFSGLII  305 (350)
T ss_pred             ---------------------------hHHhhhhhhhcccCCCCcccCCccEEEEeccccee
Confidence                                       233321  122 24567889999999999988753

>KOG1217|consensus

Probab=98.46  E-value=1.5e-06  Score=79.64  Aligned_cols=166  Identities=25%  Similarity=0.631  Sum_probs=103.5

Q ss_pred             CCCCC--CCCCCeeccCC---Cceeeecc------------ccCC-cCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCc
Q psy590           15 KVPRP--CQSDLDCLDAE---ACYSGQCE------------DLCA-IASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKC   76 (257)
Q Consensus        15 c~~~~--C~~~~~C~~~~---g~~~C~C~------------~~C~-~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C   76 (257)
                      |...+  +...+.|.+..   ..|.|.|.            ++|. ..++|.+++.|.+..++|.|.|++||.+.   .|
T Consensus       129 C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~---~~  205 (487)
T KOG1217|consen  129 CVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGS---TC  205 (487)
T ss_pred             ecCCCCCeeCchhhcCCCCCCCceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCC---cC
Confidence            55554  24446677643   47778772            4676 35669989999999999999999999988   33


Q ss_pred             cCC-CCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCC-CeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCC
Q psy590           77 YLP-NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPN-AVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNE  154 (257)
Q Consensus        77 ~~~-~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~-~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~  154 (257)
                      +.. ....|.+...|.......+..|...   ...|..+ +.|++..++|.|.|.+||.+...                 
T Consensus       206 ~~~~~~~~c~~~~~~~~~~g~~~~~c~~~---~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~-----------------  265 (487)
T KOG1217|consen  206 ETTGNGGTCVDSVACSCPPGARGPECEVS---IVECASGDGTCVNTVGSYTCRCPEGYTGDAC-----------------  265 (487)
T ss_pred             cCCCCCceEecceeccCCCCCCCCCcccc---cccccCCCCcccccCCceeeeCCCCcccccc-----------------
Confidence            321 0112222111111111112222210   0122222 78888888889999888887731                 


Q ss_pred             CCCCCCccCCCCCccCCCCCCCC-CCCCCEeccCCCCeeeecCCCCccCCCCCcccCccc
Q psy590          155 DCPPDKLCDRLNRICINPCQEDS-CGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELIC  213 (257)
Q Consensus       155 ~C~~g~~~~~~~~~~id~C~~~~-C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~C  213 (257)
                                ..+.++++|.... |.++++|++..+.|.|.|++||++.....+.+..+|
T Consensus       266 ----------~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C  315 (487)
T KOG1217|consen  266 ----------VTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDEC  315 (487)
T ss_pred             ----------ceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCccccccccc
Confidence                      1133478888753 888999999999999999999999874113344455

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.22  E-value=6.7e-07  Score=54.21  Aligned_cols=33  Identities=27%  Similarity=0.726  Sum_probs=29.5

Q ss_pred             cCCCCCC--CCCCCCCEeccCCCCeeeecCCCCcc
Q psy590          169 CINPCQE--DSCGEHAICIPKNHGIDCQCQSGHQG  201 (257)
Q Consensus       169 ~id~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g  201 (257)
                      |||||..  +.|..++.|+|+.|+|+|.|++||+.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~   35 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYEL   35 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence            4899975  57988899999999999999999983

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG4260|consensus

Probab=98.05  E-value=5.9e-06  Score=68.80  Aligned_cols=93  Identities=22%  Similarity=0.518  Sum_probs=66.0

Q ss_pred             CCCCCCCeee---eCCCceeeeCCCCCccCCCCCcccC------CC-----------CCCCCCCC-----CCCCCCCccC
Q psy590          109 SPCAPNAVCI---NKNHATDCSCLEGFQGNGFVGCLPV------RN-----------YQPICQYN-----EDCPPDKLCD  163 (257)
Q Consensus       109 ~~C~~~~~C~---~~~g~~~C~C~~g~~g~~~~~C~~~------~~-----------~~~~C~~~-----~~C~~g~~~~  163 (257)
                      .+|..++.|.   ...|+-.|.|..||.|+....|...      ++           ....|...     .+|..|+.-+
T Consensus       150 r~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~ld  229 (350)
T KOG4260|consen  150 RPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKGCSKCKKGWKLD  229 (350)
T ss_pred             CCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCCCCChhhhcccceec
Confidence            5677777775   2346678999999999864333321      11           11122210     2256677777


Q ss_pred             CCCCccCCCCCC--CCCCCCCEeccCCCCeeeecCCCCcc
Q psy590          164 RLNRICINPCQE--DSCGEHAICIPKNHGIDCQCQSGHQG  201 (257)
Q Consensus       164 ~~~~~~id~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g  201 (257)
                      ...|.|||+|..  .+|..+..|+|+.|+|+|.+++||.+
T Consensus       230 e~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~  269 (350)
T KOG4260|consen  230 EEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK  269 (350)
T ss_pred             ccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence            778999999974  68999899999999999999999987

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.96  E-value=3.3e-06  Score=47.91  Aligned_cols=30  Identities=30%  Similarity=0.860  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCEeccCC-CCeeeecCCCCccC
Q psy590          173 CQEDSCGEHAICIPKN-HGIDCQCQSGHQGN  202 (257)
Q Consensus       173 C~~~~C~~~~~C~~~~-g~~~C~C~~G~~g~  202 (257)
                      |.+++|.++|+|++.. ++|+|.|++||+|.
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            4567899999999998 99999999999986

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.93  E-value=8.1e-06  Score=49.40  Aligned_cols=35  Identities=31%  Similarity=0.763  Sum_probs=30.0

Q ss_pred             cCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCcc
Q psy590           86 SNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQG  134 (257)
Q Consensus        86 ~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g  134 (257)
                      |++||....              +.|..++.|+|+.|+|.|.|++||..
T Consensus         1 DidEC~~~~--------------~~C~~~~~C~N~~Gsy~C~C~~Gy~~   35 (42)
T PF07645_consen    1 DIDECAEGP--------------HNCPENGTCVNTEGSYSCSCPPGYEL   35 (42)
T ss_dssp             ESSTTTTTS--------------SSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred             CccccCCCC--------------CcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence            467787653              78988899999999999999999983

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.91  E-value=1.7e-05  Score=46.75  Aligned_cols=33  Identities=24%  Similarity=0.763  Sum_probs=29.5

Q ss_pred             CCCCCC-CCCCCCCEeccCCCCeeeecCCCCc-cC
Q psy590          170 INPCQE-DSCGEHAICIPKNHGIDCQCQSGHQ-GN  202 (257)
Q Consensus       170 id~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~-g~  202 (257)
                      +|+|.. ++|.+++.|++..++|.|.|+.||. |.
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~   36 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGR   36 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCC
Confidence            788877 7899889999999999999999998 54

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.85  E-value=9e-06  Score=47.32  Aligned_cols=30  Identities=23%  Similarity=0.736  Sum_probs=24.3

Q ss_pred             CCCCCCCEeccCCCCeeeecCCCCccCCCC
Q psy590          176 DSCGEHAICIPKNHGIDCQCQSGHQGNPYI  205 (257)
Q Consensus       176 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~  205 (257)
                      +.|+.+|+|+++.++|.|+|++||.|++..
T Consensus         6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~~   35 (36)
T PF12947_consen    6 GGCHPNATCTNTGGSYTCTCKPGYEGDGFF   35 (36)
T ss_dssp             GGS-TTCEEEE-TTSEEEEE-CEEECCSTC
T ss_pred             CCCCCCcEeecCCCCEEeECCCCCccCCcC
Confidence            358999999999999999999999999854

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG1225|consensus

Probab=97.66  E-value=0.00029  Score=65.09  Aligned_cols=77  Identities=22%  Similarity=0.613  Sum_probs=47.9

Q ss_pred             CCCCCCeeeeCCCceeeeCCCCCccCCC--CCcccCCCCCCCCC-CCCCCCCCCccCCCCCccCCCCCCCCCCCCCEecc
Q psy590          110 PCAPNAVCINKNHATDCSCLEGFQGNGF--VGCLPVRNYQPICQ-YNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIP  186 (257)
Q Consensus       110 ~C~~~~~C~~~~g~~~C~C~~g~~g~~~--~~C~~~~~~~~~C~-~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~  186 (257)
                      .|..++.+++.    .|.|.+||.|...  ..|...-...+.|. ..+.|.+||.|..        |....|.+++.|++
T Consensus       286 ~cs~~g~~~~g----~CiC~~g~~G~dCs~~~cpadC~g~G~Ci~G~C~C~~Gy~G~~--------C~~~~C~~~g~cv~  353 (525)
T KOG1225|consen  286 DCSGGGVCVDG----ECICNPGYSGKDCSIRRCPADCSGHGKCIDGECLCDEGYTGEL--------CIQRACSGGGQCVN  353 (525)
T ss_pred             ccCCCceecCC----EeecCCCccccccccccCCccCCCCCcccCCceEeCCCCcCCc--------ccccccCCCceecc
Confidence            35555555433    6889999988862  12332222344555 2455677887653        33224888888876


Q ss_pred             CCCCeeeecCCCCccCC
Q psy590          187 KNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       187 ~~g~~~C~C~~G~~g~~  203 (257)
                      .     |.|..||+|..
T Consensus       354 g-----C~C~~Gw~G~d  365 (525)
T KOG1225|consen  354 G-----CKCKKGWRGPD  365 (525)
T ss_pred             C-----ceeccCccCCC
Confidence            3     89999999876

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.50  E-value=0.00017  Score=41.87  Aligned_cols=34  Identities=24%  Similarity=0.717  Sum_probs=29.6

Q ss_pred             CCCCCC-CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          170 INPCQE-DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       170 id~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      +++|.. .+|.+++.|++..++|+|.|+.||.|..
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~   36 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRN   36 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCc
Confidence            677876 6898889999999999999999999854

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.50  E-value=6.5e-05  Score=43.69  Aligned_cols=30  Identities=37%  Similarity=0.758  Sum_probs=24.6

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCCCccCCC
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQGYEGNPA   73 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~   73 (257)
                      .+.|+.+|.|+++.++|.|.|++||.|++.
T Consensus         5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~   34 (36)
T PF12947_consen    5 NGGCHPNATCTNTGGSYTCTCKPGYEGDGF   34 (36)
T ss_dssp             GGGS-TTCEEEE-TTSEEEEE-CEEECCST
T ss_pred             CCCCCCCcEeecCCCCEEeECCCCCccCCc
Confidence            568999999999999999999999999863

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.43  E-value=7.4e-05  Score=42.30  Aligned_cols=28  Identities=29%  Similarity=0.776  Sum_probs=24.7

Q ss_pred             CCCCCCCCEeeeCC-CCcEeeCCCCCccC
Q psy590           44 ASLCAPSAKCHVVK-HRPVCTCPQGYEGN   71 (257)
Q Consensus        44 ~~~C~~~~~C~~~~-g~~~C~C~~G~~g~   71 (257)
                      .++|.++++|++.. +.|.|.|++||+|.
T Consensus         3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    3 SNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            56899999999988 88999999999885

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.28  E-value=0.00025  Score=37.14  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=18.2

Q ss_pred             CeeeecCCCCccCCC-CCcccCcc
Q psy590          190 GIDCQCQSGHQGNPY-IACLSELI  212 (257)
Q Consensus       190 ~~~C~C~~G~~g~~~-~~C~~~~~  212 (257)
                      +|+|.|++||+.... .+|.||||
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            689999999995432 35999986

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.22  E-value=0.00055  Score=40.08  Aligned_cols=33  Identities=33%  Similarity=0.756  Sum_probs=26.7

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCc-cC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYE-GN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~-g~   71 (257)
                      ++|....+|.+++.|+++.++|.|.|++||. |.
T Consensus         3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~   36 (39)
T smart00179        3 DECASGNPCQNGGTCVNTVGSYRCECPPGYTDGR   36 (39)
T ss_pred             ccCcCCCCcCCCCEeECCCCCeEeECCCCCccCC
Confidence            5676226888888999999999999999998 54

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.08  E-value=0.00059  Score=35.72  Aligned_cols=24  Identities=33%  Similarity=0.850  Sum_probs=18.9

Q ss_pred             CcEeeCCCCCccCCCCCccCCCCCCCCcCCC
Q psy590           59 RPVCTCPQGYEGNPATKCYLPNPLGCVSNEE   89 (257)
Q Consensus        59 ~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~e   89 (257)
                      +|+|.|++||+..+       +...|+|+||
T Consensus         1 sy~C~C~~Gy~l~~-------d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSP-------DGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCC-------CCCccccCCC
Confidence            58999999998764       3567888875

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.01  E-value=0.0011  Score=37.71  Aligned_cols=28  Identities=21%  Similarity=0.713  Sum_probs=25.1

Q ss_pred             CCCCCCCCEeccCCCCeeeecCCCCccC
Q psy590          175 EDSCGEHAICIPKNHGIDCQCQSGHQGN  202 (257)
Q Consensus       175 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~  202 (257)
                      ..+|.+++.|++..++|.|.|+.||.|.
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence            4568888999999999999999999987

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.91  E-value=0.0016  Score=37.20  Aligned_cols=29  Identities=28%  Similarity=0.822  Sum_probs=24.4

Q ss_pred             CCC-CCCCCCCEeccCCCCeeeecCCCCccC
Q psy590          173 CQE-DSCGEHAICIPKNHGIDCQCQSGHQGN  202 (257)
Q Consensus       173 C~~-~~C~~~~~C~~~~g~~~C~C~~G~~g~  202 (257)
                      |.. ++|.++ .|++..++|.|.|+.||.|+
T Consensus         2 C~~~~~C~~~-~C~~~~~~~~C~C~~g~~g~   31 (35)
T smart00181        2 CASGGPCSNG-TCINTPGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCcCCCCCC-EEECCCCCeEeECCCCCccC
Confidence            444 568877 99999999999999999984

>KOG1225|consensus

Probab=96.74  E-value=0.012  Score=54.72  Aligned_cols=83  Identities=25%  Similarity=0.601  Sum_probs=51.9

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCCCC--CcccCCCCCCCCC-CCCCCCCCCccCCCCCccCCCCCCCCCCCCCEec
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNGFV--GCLPVRNYQPICQ-YNEDCPPDKLCDRLNRICINPCQEDSCGEHAICI  185 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~--~C~~~~~~~~~C~-~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~  185 (257)
                      ..|..++.|++.    .|.|++||.|..-.  .|...--....+. ..+.|.+||.|....   +-.|. .+|.+++.|+
T Consensus       254 ~~c~~~g~c~~G----~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g~CiC~~g~~G~dCs---~~~cp-adC~g~G~Ci  325 (525)
T KOG1225|consen  254 GGCTGRGQCVEG----RCICPPGFTGDDCDELVCPVDCSGGGVCVDGECICNPGYSGKDCS---IRRCP-ADCSGHGKCI  325 (525)
T ss_pred             CCCcccceEeCC----eEeCCCCCcCCCCCcccCCcccCCCceecCCEeecCCCccccccc---cccCC-ccCCCCCccc
Confidence            445555667644    69999999998622  1222100111222 235688999885422   33343 6799999999


Q ss_pred             cCCCCeeeecCCCCccCC
Q psy590          186 PKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       186 ~~~g~~~C~C~~G~~g~~  203 (257)
                        .+  +|.|.+||+|..
T Consensus       326 --~G--~C~C~~Gy~G~~  339 (525)
T KOG1225|consen  326 --DG--ECLCDEGYTGEL  339 (525)
T ss_pred             --CC--ceEeCCCCcCCc
Confidence              22  699999999987

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=96.71  E-value=0.0029  Score=36.44  Aligned_cols=33  Identities=33%  Similarity=0.773  Sum_probs=26.2

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      ++|....+|.+++.|++..+.|.|.|+.||.|.
T Consensus         3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~   35 (38)
T cd00054           3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR   35 (38)
T ss_pred             ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCC
Confidence            456521678878899998889999999999885

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.17  E-value=0.0091  Score=33.71  Aligned_cols=28  Identities=29%  Similarity=0.784  Sum_probs=23.4

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      ..+|.+++.|++..+.|.|.|+.||.|.
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence            3577778889988888999999999875

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.17  E-value=0.0094  Score=33.92  Aligned_cols=25  Identities=32%  Similarity=0.865  Sum_probs=22.4

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCcc
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEG   70 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g   70 (257)
                      .+|.++ .|++..++|.|.|++||.|
T Consensus         6 ~~C~~~-~C~~~~~~~~C~C~~g~~g   30 (35)
T smart00181        6 GPCSNG-TCINTPGSYTCSCPPGYTG   30 (35)
T ss_pred             CCCCCC-EEECCCCCeEeECCCCCcc
Confidence            578877 8999989999999999988

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=95.95  E-value=0.0031  Score=50.13  Aligned_cols=131  Identities=23%  Similarity=0.510  Sum_probs=73.7

Q ss_pred             CCCCCCeeccCCCceeeecc--------------ccCCc----CCCCCCCCEeeeCC-----CCcEeeCCCCCccCCCCC
Q psy590           19 PCQSDLDCLDAEACYSGQCE--------------DLCAI----ASLCAPSAKCHVVK-----HRPVCTCPQGYEGNPATK   75 (257)
Q Consensus        19 ~C~~~~~C~~~~g~~~C~C~--------------~~C~~----~~~C~~~~~C~~~~-----g~~~C~C~~G~~g~~~~~   75 (257)
                      .|.+ |..+..-..|.|.|.              .+|..    ..+|+..+.|.+..     ..|.|.|.+||+.... .
T Consensus         7 ~CKN-G~LiQMSNHfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~-v   84 (197)
T PF06247_consen    7 ICKN-GYLIQMSNHFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG-V   84 (197)
T ss_dssp             --BT-EEEEEESSEEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS-S
T ss_pred             cccC-CEEEEccCceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC-e
Confidence            4554 455545566788882              33431    46798899999876     4689999999987732 2


Q ss_pred             ccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCC---CceeeeCCCCCccCCCCCcccCCCCCCCCCC
Q psy590           76 CYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN---HATDCSCLEGFQGNGFVGCLPVRNYQPICQY  152 (257)
Q Consensus        76 C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~---g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~  152 (257)
                              |. .++|..                ..|. .+.|+..+   ....|+|.-|+.......|....        
T Consensus        85 --------Cv-p~~C~~----------------~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G--------  130 (197)
T PF06247_consen   85 --------CV-PNKCNN----------------KDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTG--------  130 (197)
T ss_dssp             --------EE-EGGGSS-------------------T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE--------
T ss_pred             --------Ec-hhhcCc----------------eecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCC--------
Confidence                    32 133432                4577 57887433   34589999998843333233211        


Q ss_pred             CCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          153 NEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       153 ~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                                       -.+|.. .|..+..|..+.+-|+|.|..||.++.
T Consensus       131 -----------------~T~C~L-KCk~nE~CK~~~~~Y~C~~~~~~~~~~  163 (197)
T PF06247_consen  131 -----------------ETKCSL-KCKENEECKLVDGYYKCVCKEGFPGDG  163 (197)
T ss_dssp             --------------------------TTTEEEEEETTEEEEEE-TT-EEET
T ss_pred             -----------------ccceee-ecCCCcceeeeCcEEEeecCCCCCCCC
Confidence                             223432 266778999999999999999998765

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=94.97  E-value=0.013  Score=33.98  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=18.2

Q ss_pred             CEeccCCCCeeeecCCCCccCC
Q psy590          182 AICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       182 ~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      ..|++++++|+|.|++||+...
T Consensus        10 h~C~~~~g~~~C~C~~Gy~L~~   31 (36)
T PF14670_consen   10 HICVNTPGSYRCSCPPGYKLAE   31 (36)
T ss_dssp             SEEEEETTSEEEE-STTEEE-T
T ss_pred             CCCccCCCceEeECCCCCEECc
Confidence            5899999999999999998754

...

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=94.71  E-value=0.0053  Score=48.81  Aligned_cols=105  Identities=30%  Similarity=0.711  Sum_probs=61.5

Q ss_pred             CCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCC----
Q psy590           46 LCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN----  121 (257)
Q Consensus        46 ~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~----  121 (257)
                      .|.+ +..+.....|.|.|.+||....        .+.|....+|....           ....+|...+.|++..    
T Consensus         7 ~CKN-G~LiQMSNHfEC~Cnegfvl~~--------EntCE~kv~C~~~e-----------~~~K~Cgdya~C~~~~~~~~   66 (197)
T PF06247_consen    7 ICKN-GYLIQMSNHFECKCNEGFVLKN--------ENTCEEKVECDKLE-----------NVNKPCGDYAKCINQANKGE   66 (197)
T ss_dssp             --BT-EEEEEESSEEEEEESTTEEEEE--------TTEEEE----SG-G-----------GTTSEEETTEEEEE-SSTTS
T ss_pred             cccC-CEEEEccCceEEEcCCCcEEcc--------ccccccceecCccc-----------ccCccccchhhhhcCCCccc
Confidence            4544 4666667789999999998763        33455555554310           0135788889998765    


Q ss_pred             -CceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCC---CCeeeecCC
Q psy590          122 -HATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKN---HGIDCQCQS  197 (257)
Q Consensus       122 -g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~---g~~~C~C~~  197 (257)
                       ..|.|.|.+||...... |.+                            +.|....|+ .|.|+-.+   ....|+|..
T Consensus        67 ~~~~~C~C~~gY~~~~~v-Cvp----------------------------~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~I  116 (197)
T PF06247_consen   67 ERAYKCDCINGYILKQGV-CVP----------------------------NKCNNKDCG-SGKCILDPDNPNNPTCSCNI  116 (197)
T ss_dssp             STSEEEEE-TTEEESSSS-EEE----------------------------GGGSS---T-TEEEEEEEGGGSEEEEEE-T
T ss_pred             ceeEEEecccCceeeCCe-Ech----------------------------hhcCceecC-CCeEEecCCCCCCceeEeee
Confidence             47999999999876432 221                            344445577 57885432   245999999


Q ss_pred             CCc
Q psy590          198 GHQ  200 (257)
Q Consensus       198 G~~  200 (257)
                      |+.
T Consensus       117 GkV  119 (197)
T PF06247_consen  117 GKV  119 (197)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            998

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=93.77  E-value=0.089  Score=29.57  Aligned_cols=25  Identities=32%  Similarity=0.757  Sum_probs=21.1

Q ss_pred             CCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          177 SCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       177 ~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      .|.++++|+..  ..+|+|.+||+|+.
T Consensus         7 ~C~~~G~C~~~--~g~C~C~~g~~G~~   31 (32)
T PF07974_consen    7 ICSGHGTCVSP--CGRCVCDSGYTGPD   31 (32)
T ss_pred             ccCCCCEEeCC--CCEEECCCCCcCCC
Confidence            58889999876  45899999999975

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=93.72  E-value=0.053  Score=31.40  Aligned_cols=25  Identities=28%  Similarity=0.643  Sum_probs=19.3

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      ..|..  .|++++++|.|.|++||.+.
T Consensus         6 GgC~h--~C~~~~g~~~C~C~~Gy~L~   30 (36)
T PF14670_consen    6 GGCSH--ICVNTPGSYRCSCPPGYKLA   30 (36)
T ss_dssp             GGSSS--EEEEETTSEEEE-STTEEE-
T ss_pred             CCcCC--CCccCCCceEeECCCCCEEC
Confidence            34553  79999999999999999886

...

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=93.47  E-value=0.087  Score=43.75  Aligned_cols=36  Identities=19%  Similarity=0.446  Sum_probs=28.3

Q ss_pred             CCccCCCCCC--CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          166 NRICINPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       166 ~~~~id~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      .|.++++|..  +.|.  ..|.++.|+|.|.|+.||+...
T Consensus       183 ~C~~~~~C~~~~~~c~--~~C~~~~g~~~c~c~~g~~~~~  220 (224)
T cd01475         183 ICVVPDLCATLSHVCQ--QVCISTPGSYLCACTEGYALLE  220 (224)
T ss_pred             cCcCchhhcCCCCCcc--ceEEcCCCCEEeECCCCccCCC
Confidence            3555788864  4565  5899999999999999998743

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=93.36  E-value=0.036  Score=24.51  Aligned_cols=12  Identities=42%  Similarity=1.013  Sum_probs=9.2

Q ss_pred             eeecCCCCccCC
Q psy590          192 DCQCQSGHQGNP  203 (257)
Q Consensus       192 ~C~C~~G~~g~~  203 (257)
                      .|+|++||+|..
T Consensus         1 ~C~C~~G~~G~~   12 (13)
T PF12661_consen    1 TCQCPPGWTGPN   12 (13)
T ss_dssp             EEEE-TTEETTT
T ss_pred             CccCcCCCcCCC
Confidence            489999999975

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=93.15  E-value=0.027  Score=32.59  Aligned_cols=32  Identities=22%  Similarity=0.521  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCEeccCC-CCeeeecCCCCccCCC
Q psy590          173 CQEDSCGEHAICIPKN-HGIDCQCQSGHQGNPY  204 (257)
Q Consensus       173 C~~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~  204 (257)
                      |....|..++.|++.. |.+.|+|..||..++.
T Consensus         2 C~~~~cP~NA~C~~~~dG~eecrCllgyk~~~~   34 (37)
T PF12946_consen    2 CIDTKCPANAGCFRYDDGSEECRCLLGYKKVGG   34 (37)
T ss_dssp             -SSS---TTEEEEEETTSEEEEEE-TTEEEETT
T ss_pred             ccCccCCCCcccEEcCCCCEEEEeeCCccccCC
Confidence            3345677889999886 8999999999987664

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=91.64  E-value=0.28  Score=27.53  Aligned_cols=25  Identities=28%  Similarity=0.780  Sum_probs=20.4

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      ..|..+++|+..  ...|.|.+||.|.
T Consensus         6 ~~C~~~G~C~~~--~g~C~C~~g~~G~   30 (32)
T PF07974_consen    6 NICSGHGTCVSP--CGRCVCDSGYTGP   30 (32)
T ss_pred             CccCCCCEEeCC--CCEEECCCCCcCC
Confidence            468889999865  3579999999987

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG1226|consensus

Probab=91.27  E-value=1.8  Score=41.88  Aligned_cols=64  Identities=22%  Similarity=0.599  Sum_probs=37.5

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCccCCC-CCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCc
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEGNPA-TKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHA  123 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~-~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~  123 (257)
                      .+|..++.|+=    .+|.|.+...+.-+ .+|+      |.+. .|....             ...|..++.|.-.   
T Consensus       514 ~vCSgrG~C~C----GqC~C~~~~~~~i~G~fCE------CDnf-sC~r~~-------------g~lC~g~G~C~CG---  566 (783)
T KOG1226|consen  514 PVCSGRGDCVC----GQCVCHKPDNGKIYGKFCE------CDNF-SCERHK-------------GVLCGGHGRCECG---  566 (783)
T ss_pred             CCcCCCCcEeC----CceEecCCCCCceeeeeee------ccCc-cccccc-------------CcccCCCCeEeCC---
Confidence            36777777752    24788777662211 1454      2221 232211             2568888887533   


Q ss_pred             eeeeCCCCCccCC
Q psy590          124 TDCSCLEGFQGNG  136 (257)
Q Consensus       124 ~~C~C~~g~~g~~  136 (257)
                       .|+|.+||+|..
T Consensus       567 -~CvC~~GwtG~~  578 (783)
T KOG1226|consen  567 -RCVCNPGWTGSA  578 (783)
T ss_pred             -cEEcCCCCccCC
Confidence             599999999985

>KOG0994|consensus

Probab=89.01  E-value=1.7  Score=44.04  Aligned_cols=15  Identities=33%  Similarity=0.904  Sum_probs=12.4

Q ss_pred             CceeeeCCCCCccCC
Q psy590          122 HATDCSCLEGFQGNG  136 (257)
Q Consensus       122 g~~~C~C~~g~~g~~  136 (257)
                      ....|.|.+||.|..
T Consensus       932 ~~ivC~C~~GY~G~R  946 (1758)
T KOG0994|consen  932 QQIVCHCQEGYSGSR  946 (1758)
T ss_pred             cceeeecccCccccc
Confidence            456899999999984

>KOG1226|consensus

Probab=88.78  E-value=2.5  Score=40.97  Aligned_cols=89  Identities=25%  Similarity=0.740  Sum_probs=54.2

Q ss_pred             CCCCCCeec-------cCCC----ceeeecccc-CC--cCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCC
Q psy590           19 PCQSDLDCL-------DAEA----CYSGQCEDL-CA--IASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGC   84 (257)
Q Consensus        19 ~C~~~~~C~-------~~~g----~~~C~C~~~-C~--~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C   84 (257)
                      +|-..|.|.       ....    +.+|+|.|- |.  ....|..++.|.=    ..|.|.+||+|.   .|.-.     
T Consensus       515 vCSgrG~C~CGqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~C----G~CvC~~GwtG~---~C~C~-----  582 (783)
T KOG1226|consen  515 VCSGRGDCVCGQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCEC----GRCVCNPGWTGS---ACNCP-----  582 (783)
T ss_pred             CcCCCCcEeCCceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeC----CcEEcCCCCccC---CCCCC-----
Confidence            677666654       2222    457888654 65  2567888888853    359999999998   66521     


Q ss_pred             CcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCC-CccCC
Q psy590           85 VSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEG-FQGNG  136 (257)
Q Consensus        85 ~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g-~~g~~  136 (257)
                      .+.+.|....             ...|...++|.-.    +|+|... |.|..
T Consensus       583 ~std~C~~~~-------------G~iCSGrG~C~Cg----~C~C~~~~~sG~~  618 (783)
T KOG1226|consen  583 LSTDTCESSD-------------GQICSGRGTCECG----RCKCTDPPYSGEF  618 (783)
T ss_pred             CCCccccCCC-------------CceeCCCceeeCC----ceEcCCCCcCcch
Confidence            2334444322             2456666666533    4777755 77774

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=88.40  E-value=0.58  Score=38.76  Aligned_cols=39  Identities=31%  Similarity=0.611  Sum_probs=29.6

Q ss_pred             CCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccC
Q psy590           81 PLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGN  135 (257)
Q Consensus        81 ~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~  135 (257)
                      ...|.+.++|....              ..|.  ..|.++.|+|.|.|..||...
T Consensus       181 ~~~C~~~~~C~~~~--------------~~c~--~~C~~~~g~~~c~c~~g~~~~  219 (224)
T cd01475         181 GKICVVPDLCATLS--------------HVCQ--QVCISTPGSYLCACTEGYALL  219 (224)
T ss_pred             cccCcCchhhcCCC--------------CCcc--ceEEcCCCCEEeECCCCccCC
Confidence            34576777776532              5565  479999999999999999865

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=83.90  E-value=0.58  Score=27.11  Aligned_cols=29  Identities=24%  Similarity=0.550  Sum_probs=20.3

Q ss_pred             CCCCCCCCEeeeCC-CCcEeeCCCCCccCC
Q psy590           44 ASLCAPSAKCHVVK-HRPVCTCPQGYEGNP   72 (257)
Q Consensus        44 ~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~   72 (257)
                      ...|..++.|.+.. |.+.|+|..||...+
T Consensus         4 ~~~cP~NA~C~~~~dG~eecrCllgyk~~~   33 (37)
T PF12946_consen    4 DTKCPANAGCFRYDDGSEECRCLLGYKKVG   33 (37)
T ss_dssp             SS---TTEEEEEETTSEEEEEE-TTEEEET
T ss_pred             CccCCCCcccEEcCCCCEEEEeeCCccccC
Confidence            45677888998877 889999999997653

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PHA02887 EGF-like protein; Provisional

Probab=83.55  E-value=1.3  Score=32.51  Aligned_cols=37  Identities=24%  Similarity=0.533  Sum_probs=27.0

Q ss_pred             CCCCCC---CCCCCCCEeccC--CCCeeeecCCCCccCCCCCcccC
Q psy590          170 INPCQE---DSCGEHAICIPK--NHGIDCQCQSGHQGNPYIACLSE  210 (257)
Q Consensus       170 id~C~~---~~C~~~~~C~~~--~g~~~C~C~~G~~g~~~~~C~~~  210 (257)
                      .++|.+   +-|. +|+|...  ...+.|.|+.||+|.+   |+.+
T Consensus        83 f~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG~R---CE~v  124 (126)
T PHA02887         83 FEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTGIR---CDEV  124 (126)
T ss_pred             ccccChHhhCEee-CCEEEccccCCCceeECCCCcccCC---CCcc
Confidence            566754   4577 4799654  4568999999999998   7643

>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation

Probab=82.76  E-value=1.4  Score=32.09  Aligned_cols=32  Identities=41%  Similarity=0.997  Sum_probs=24.1

Q ss_pred             CCCCCCCCCCCCCeeeeCCCceeeeCCCCCccC
Q psy590          103 KPCAVHSPCAPNAVCINKNHATDCSCLEGFQGN  135 (257)
Q Consensus       103 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~  135 (257)
                      ++|.....|+.++.|.. .....|.|.+||...
T Consensus        78 d~Cd~y~~CG~~g~C~~-~~~~~C~Cl~GF~P~  109 (110)
T PF00954_consen   78 DQCDVYGFCGPNGICNS-NNSPKCSCLPGFEPK  109 (110)
T ss_pred             cCCCCccccCCccEeCC-CCCCceECCCCcCCC
Confidence            35656789999999953 345679999999753

This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=81.29  E-value=1.3  Score=33.14  Aligned_cols=38  Identities=29%  Similarity=0.630  Sum_probs=27.6

Q ss_pred             CCCCCC---CCCCCCCEeccC--CCCeeeecCCCCccCCCCCcccCc
Q psy590          170 INPCQE---DSCGEHAICIPK--NHGIDCQCQSGHQGNPYIACLSEL  211 (257)
Q Consensus       170 id~C~~---~~C~~~~~C~~~--~g~~~C~C~~G~~g~~~~~C~~~~  211 (257)
                      +.+|.+   +-|.++ +|...  ...+.|.|..||+|.+   |+-.+
T Consensus        42 i~~Cp~ey~~YClHG-~C~yI~dl~~~~CrC~~GYtGeR---CEh~d   84 (139)
T PHA03099         42 IRLCGPEGDGYCLHG-DCIHARDIDGMYCRCSHGYTGIR---CQHVV   84 (139)
T ss_pred             cccCChhhCCEeECC-EEEeeccCCCceeECCCCccccc---cccee
Confidence            445653   457764 89655  4678999999999998   87544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.81
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.77
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.74
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.7
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.68
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.67
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.61
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.61
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.54
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.52
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.5
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.4
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.38
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.37
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.29
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.28
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.28
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.26
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.18
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.18
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.17
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.17
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.16
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.09
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.09
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.06
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.04
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.99
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.99
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.98
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.98
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.97
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.94
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.92
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.91
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.9
2vh0_B	134	Activated factor XA light chain; serine protease,	98.9
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.89
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.88
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.78
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.76
2vh0_B	134	Activated factor XA light chain; serine protease,	98.73
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.69
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.68
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.66
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.66
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.55
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.53
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.52
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.45
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.42
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.38
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.37
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.32
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.18
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.15
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.08
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.03
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.02
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.99
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.97
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.91
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	97.89
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.86
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.81
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.81
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	97.8
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.75
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	97.71
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.68
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.67
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	97.63
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.62
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.57
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.57
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.53
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.45
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.43
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.42
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.38
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.31
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	97.15
1ob1_C	99	Major merozoite surface protein; immune system, im	97.08
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.07
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.04
1ob1_C	99	Major merozoite surface protein; immune system, im	97.03
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.99
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	96.95
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.88
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.66
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	96.63
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.61
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.58
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.57
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.39
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.04
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.95
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	95.81
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	95.79
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	95.66
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	95.66
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	95.6
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	95.54
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.35
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	95.34
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	95.28
1szb_A	170	Mannose binding lectin-associated serine protease-	95.2
2wph_E	59	Coagulation factor IXA light chain; serine proteas	95.14
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	95.02
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	94.91
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	94.5
2wph_E	59	Coagulation factor IXA light chain; serine proteas	94.36
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	94.22
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	94.11
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	93.58
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	93.14
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	93.09
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	92.53
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	92.43
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	92.28
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	91.94
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	91.63
1nzi_A	159	Complement C1S component; calcium, innate immunity	91.34
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	90.64
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	90.38
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	89.63
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	88.87
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	88.83
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	87.43
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	87.25
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	87.17
1szb_A	170	Mannose binding lectin-associated serine protease-	87.09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	86.47
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	86.43
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	86.42
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	83.89
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	83.82
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	83.36
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	82.45
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	81.72
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	80.3

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.81  E-value=1.1e-19  Score=138.94  Aligned_cols=122  Identities=29%  Similarity=0.717  Sum_probs=99.4

Q ss_pred             cccCC-cCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCe
Q psy590           38 EDLCA-IASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAV  116 (257)
Q Consensus        38 ~~~C~-~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~  116 (257)
                      +|+|. ..++|.++++|+++.++|.|.|++||+|.   .|+       .++++|..                .+|.++++
T Consensus         5 ideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~---~C~-------~~~~~C~~----------------~~C~~~~~   58 (135)
T 2vj3_A            5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP---RCE-------IDVNECVS----------------NPCQNDAT   58 (135)
T ss_dssp             CCTTTSSSCSSSTTCEEEECSSSEEEECCTTEEST---TSC-------EECCTTTT----------------CCCCSSCE
T ss_pred             cccccCCCCCCCCCCEeECCCCCEEEECCCCCcCC---ccc-------ccCccCCC----------------CCCCCCCE
Confidence            47787 35899999999999999999999999987   443       46778874                67998899


Q ss_pred             eeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCCCCeeeecC
Q psy590          117 CINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQ  196 (257)
Q Consensus       117 C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~g~~~C~C~  196 (257)
                      |++..++|.|.|.+||.|..             |.                .++++|..++|.++++|++..++|+|.|+
T Consensus        59 C~~~~g~~~C~C~~G~~G~~-------------C~----------------~~~~~C~~~~C~~~g~C~~~~g~~~C~C~  109 (135)
T 2vj3_A           59 CLDQIGEFQCICMPGYEGVH-------------CE----------------VNTDECASSPCLHNGRCLDKINEFQCECP  109 (135)
T ss_dssp             EEECSSCEEEECCTTEESSS-------------SC----------------EECCTTTTCCSTTTCEEEECSSCEEEECC
T ss_pred             EeCCCCCceeeCCCCCcCCc-------------ce----------------ecCCcccCCCcCCCCEeECCCCCeEEECC
Confidence            99999999999999999872             21                12788988999999999999999999999


Q ss_pred             CCCccCCCCCcc-cCccccCCC
Q psy590          197 SGHQGNPYIACL-SELICLCHL  217 (257)
Q Consensus       197 ~G~~g~~~~~C~-~~~~C~~~~  217 (257)
                      +||+|..   |+ ++++|....
T Consensus       110 ~G~~G~~---C~~~i~~C~~~~  128 (135)
T 2vj3_A          110 TGFTGHL---CQVDLHHILDAQ  128 (135)
T ss_dssp             TTEESSS---SCEECC------
T ss_pred             CCCcCCc---cCccCccccCCC
Confidence            9999986   85 899987653

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.77  E-value=8.1e-20  Score=147.11  Aligned_cols=137  Identities=22%  Similarity=0.518  Sum_probs=110.2

Q ss_pred             CCCCCCCCCCCeeccCCCceeeec--------------cccCCc---CCCCCCCCEeeeCC-----CCcEeeCCCCCccC
Q psy590           14 AKVPRPCQSDLDCLDAEACYSGQC--------------EDLCAI---ASLCAPSAKCHVVK-----HRPVCTCPQGYEGN   71 (257)
Q Consensus        14 ~c~~~~C~~~~~C~~~~g~~~C~C--------------~~~C~~---~~~C~~~~~C~~~~-----g~~~C~C~~G~~g~   71 (257)
                      -..++||.+ ++|+++.++|+|.|              +++|..   .++|.++++|+++.     ++|.|.|++||+|.
T Consensus         7 ~~~~~pC~n-g~C~~~~g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~   85 (186)
T 1z1y_A            7 VTVDTICXN-GQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLX   85 (186)
T ss_dssp             CCTTCCCBT-EEEEECSSCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEE
T ss_pred             cCCCCCCCC-CEeECCCCCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccC
Confidence            356789996 59999999999988              266762   46798889999998     89999999999997


Q ss_pred             CCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeee----eCCCceeeeCCCCCccCC--CCCcccCCC
Q psy590           72 PATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCI----NKNHATDCSCLEGFQGNG--FVGCLPVRN  145 (257)
Q Consensus        72 ~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~----~~~g~~~C~C~~g~~g~~--~~~C~~~~~  145 (257)
                      .   +      .|. +++|..                .+|.+++.|+    +..++|.|.|.+||.|..  ...|++++ 
T Consensus        86 ~---~------~C~-~d~C~~----------------~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~-  138 (186)
T 1z1y_A           86 E---D------TCV-LDVCQY----------------XNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTG-  138 (186)
T ss_dssp             T---T------EEE-EGGGTT----------------CCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEE-
T ss_pred             C---C------CCC-CCcCcC----------------CCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcC-
Confidence            3   2      244 577764                6799889998    788899999999999842  12243321 


Q ss_pred             CCCCCCCCCCCCCCCccCCCCCccCCCCCCCCC-CCCCEeccCCCCeeeecCCCCccCC
Q psy590          146 YQPICQYNEDCPPDKLCDRLNRICINPCQEDSC-GEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       146 ~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C-~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                                              +++|. ++| .++++|+++.++|+|.|++||+|+.
T Consensus       139 ------------------------~~~C~-~~C~~~~~~C~n~~g~y~C~C~~G~~g~~  172 (186)
T 1z1y_A          139 ------------------------ETACQ-LXCNTDNEVCXNVEGVYXCQCMEGFTFDX  172 (186)
T ss_dssp             ------------------------CCCCC-CCCCTTTEEEEEETTEEEEEECTTCEEET
T ss_pred             ------------------------CCccc-ccccccCcceecCCCCeeeECCCCCccCc
Confidence                                    47887 489 8889999999999999999999987

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.74  E-value=8.1e-18  Score=129.57  Aligned_cols=116  Identities=26%  Similarity=0.623  Sum_probs=89.5

Q ss_pred             ccCCcCCCCCCCCEeeeCC--CCcEeeCCCCCccCCCCCccCC-----CCCCCCcCCCCCCCCcccCCCccCCCCCCCCC
Q psy590           39 DLCAIASLCAPSAKCHVVK--HRPVCTCPQGYEGNPATKCYLP-----NPLGCVSNEECASTEACINSQCQKPCAVHSPC  111 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~~C~~~-----~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C  111 (257)
                      |+|. .++|.++++|++..  ++|.|.|++||+|.   .|+..     +...|.++++|.                .++|
T Consensus         1 d~C~-~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~---~C~~~~~~~~~~~~c~~~~~C~----------------~~~C   60 (143)
T 4d90_A            1 DICD-PNPCENGGICLPGLADGSFSCECPDGFTDP---NCSSVVEVASDEEEPTSAGPCT----------------PNPC   60 (143)
T ss_dssp             --CC-SCCCGGGCEEEC-----CCEEECCTTCCTT---TTCSCCCCTTTTTSCCCCCTTS----------------SCCC
T ss_pred             CcCC-CCcCCCCCEeeCCCCCCCEEeECCCCCCCC---CCccCccccccccccccCCcCC----------------CCCC
Confidence            4676 78899899999866  68999999999987   56531     122344445554                4789


Q ss_pred             CCCCeee-------eCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEe
Q psy590          112 APNAVCI-------NKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAIC  184 (257)
Q Consensus       112 ~~~~~C~-------~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C  184 (257)
                      .++++|+       ++.++|.|.|++||.|.             .|.                .++|+|..++|.++++|
T Consensus        61 ~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~-------------~C~----------------~~i~~C~~~~C~~~~~C  111 (143)
T 4d90_A           61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGI-------------HCQ----------------HNINECEVEPCKNGGIC  111 (143)
T ss_dssp             CTTCEEEECCCEETTEECCEEEECCTTEEST-------------TSC----------------EECCTTTTCCSCTTCEE
T ss_pred             CCCCEecCCCccccCCCCCeEeECcCCCcCC-------------Ccc----------------cCCCcCCCCCCCCCCEe
Confidence            9999999       66689999999999877             222                13899998999999999


Q ss_pred             ccCCCCeeeecCCCCccCC
Q psy590          185 IPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       185 ~~~~g~~~C~C~~G~~g~~  203 (257)
                      +++.++|+|.|++||+|+.
T Consensus       112 ~~~~g~~~C~C~~G~~G~~  130 (143)
T 4d90_A          112 TDLVANYSCECPGEFMGRN  130 (143)
T ss_dssp             EEETTEEEEECCTTCBSTT
T ss_pred             ECCCCCeEeECCCCCccCC
Confidence            9999999999999999987

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.70  E-value=2.3e-17  Score=127.09  Aligned_cols=134  Identities=17%  Similarity=0.435  Sum_probs=98.0

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCce
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHAT  124 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~  124 (257)
                      ++|.++++|++.   |.|.|++||+|....  .......|+++++|....             ..+|.+++.|+++.++|
T Consensus         7 ~~C~~~~~C~~~---~~C~C~~G~~g~~~~--~~~~~~~C~dideC~~~~-------------~~~C~~~~~C~n~~g~y   68 (143)
T 2bou_A            7 RWCPQDSSCVNA---TACRCNPGFSSFSEI--ITTPMETCDDINECATLS-------------KVSCGKFSDCWNTEGSY   68 (143)
T ss_dssp             TTCCTTEEESSS---SCEEECTTEECSSSS--BCSTTCCCEECCGGGC-----------------CCCTTEEEEECSSCE
T ss_pred             CcCCCCCEEcCC---CEEeCCCCCcCcccc--ccCCCCcCCccccccCCC-------------CCCCCCCCEEEcCCCCe
Confidence            688889999874   899999999986210  001234688899998632             13798889999999999


Q ss_pred             eeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC--CCCCCCCEeccCCCCeeeecCCCCccC
Q psy590          125 DCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGN  202 (257)
Q Consensus       125 ~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~  202 (257)
                      .|.|.+||.+....   .      .+.         ...+..|.++|+|..  ++|.++++|+++.++|+|.|++||+|.
T Consensus        69 ~C~C~~Gy~g~~~~---~------~~~---------~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~  130 (143)
T 2bou_A           69 DCVCSPGYEPVSGA---K------TFK---------NESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPR  130 (143)
T ss_dssp             EEEECTTEEETTCC---S------CBS---------SGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBC
T ss_pred             EeECCCCcccCcCc---c------ccc---------cCCCCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccC
Confidence            99999999987411   0      000         001124566999974  789999999999999999999999987


Q ss_pred             CC-CCcccCcccc
Q psy590          203 PY-IACLSELICL  214 (257)
Q Consensus       203 ~~-~~C~~~~~C~  214 (257)
                      .. ..|.++++|+
T Consensus       131 ~~~~~C~~~~~C~  143 (143)
T 2bou_A          131 HGIPNNQKDTVCE  143 (143)
T ss_dssp             TTCCSSBTTCCBC
T ss_pred             CCCccCccCCccC
Confidence            64 3577777763

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.68  E-value=2.4e-16  Score=120.25  Aligned_cols=100  Identities=33%  Similarity=0.735  Sum_probs=86.1

Q ss_pred             CCCCCCCC--CCCCCCCCeeccCCCceeeec------------cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCC
Q psy590            9 ALPGTAKV--PRPCQSDLDCLDAEACYSGQC------------EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPAT   74 (257)
Q Consensus         9 ~~~~~~c~--~~~C~~~~~C~~~~g~~~C~C------------~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~   74 (257)
                      |...|+|.  .+||.++++|+++.++|+|.|            +++|. ..+|.++++|++..++|.|.|++||+|.   
T Consensus         2 c~dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~G~---   77 (135)
T 2vj3_A            2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECV-SNPCQNDATCLDQIGEFQCICMPGYEGV---   77 (135)
T ss_dssp             -CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTT-TCCCCSSCEEEECSSCEEEECCTTEESS---
T ss_pred             CcccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCC-CCCCCCCCEEeCCCCCceeeCCCCCcCC---
Confidence            44567888  789999999999999999998            36676 6889999999999999999999999987   


Q ss_pred             CccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccC
Q psy590           75 KCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGN  135 (257)
Q Consensus        75 ~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~  135 (257)
                      .|+       .++++|..                .+|.++++|++..++|.|.|++||.|.
T Consensus        78 ~C~-------~~~~~C~~----------------~~C~~~g~C~~~~g~~~C~C~~G~~G~  115 (135)
T 2vj3_A           78 HCE-------VNTDECAS----------------SPCLHNGRCLDKINEFQCECPTGFTGH  115 (135)
T ss_dssp             SSC-------EECCTTTT----------------CCSTTTCEEEECSSCEEEECCTTEESS
T ss_pred             cce-------ecCCcccC----------------CCcCCCCEeECCCCCeEEECCCCCcCC
Confidence            443       36777764                689989999999999999999999987

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.67  E-value=1.4e-16  Score=148.41  Aligned_cols=137  Identities=29%  Similarity=0.591  Sum_probs=105.4

Q ss_pred             cccCCcCCCCCCCCEeeeCCC-CcEe-eCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCC
Q psy590           38 EDLCAIASLCAPSAKCHVVKH-RPVC-TCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNA  115 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g-~~~C-~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~  115 (257)
                      +++|. .++|.+++.|+++.+ +|.| .|++||+|.+         ..|++++||...+              ..|.+++
T Consensus         3 IDeC~-~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg---------~~CeDiDEC~~~p--------------~~C~~gg   58 (634)
T 1yo8_A            3 PDGCL-SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNG---------THCEDLDECALVP--------------DICFSTS   58 (634)
T ss_dssp             -CGGG-GCCSCTTCCEEECTTSCEEECCCCTTBCSCS---------SSCCBCCTTTTSC--------------CCSCCCS
T ss_pred             ccccC-CCCCCCCCEEecCCCCCeECCcCCCccCCCC---------CCccccccccCCC--------------CcccCCc
Confidence            36787 789999999999985 4999 9999999864         2488899998642              5599888


Q ss_pred             ---eeeeCCCceeee-CCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC--CCCCCCCEeccCC-
Q psy590          116 ---VCINKNHATDCS-CLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQE--DSCGEHAICIPKN-  188 (257)
Q Consensus       116 ---~C~~~~g~~~C~-C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~--~~C~~~~~C~~~~-  188 (257)
                         +|+++.++|.|. |++||.|..... ..+.    .          ....+..|.++++|..  ++|.++++|+++. 
T Consensus        59 ~~~~CvNt~gsY~C~~C~~Gy~G~~c~g-~g~~----~----------~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~  123 (634)
T 1yo8_A           59 KVPRCVNTQPGFHCLPCPPRYRGNQPVG-VGLE----A----------AKTEKQVCEPENPCKDKTHNCHKHAECIYLGH  123 (634)
T ss_dssp             SSCCEEECSSSEEECCCCTTEEECCCEE-SSSH----H----------HHSCCCCEEECCTTTTTCCCCCTTEEEEECCT
T ss_pred             cccceeeccCceecccCCCCcccCcccc-cccc----c----------cccCCCcccccccccCCCcccccCcccccccc
Confidence               999999999999 999999884210 0000    0          0001233566999985  5899999999998 


Q ss_pred             ---CCeeeecCCCCccCCCCCcc---cCcccc
Q psy590          189 ---HGIDCQCQSGHQGNPYIACL---SELICL  214 (257)
Q Consensus       189 ---g~~~C~C~~G~~g~~~~~C~---~~~~C~  214 (257)
                         ++|+|.|++||+|++.. |+   ++++|.
T Consensus       124 ~~~GsY~C~C~~Gy~GdG~~-Ce~d~DiDeC~  154 (634)
T 1yo8_A          124 FSDPMYKCECQTGYAGDGLI-CGEDSDLDGWP  154 (634)
T ss_dssp             TCSSSEEEEECTTEEESSSS-EEECTTSSSSC
T ss_pred             ccccceeeeccCCccccCcc-cccccCccccc
Confidence               99999999999998765 86   788875

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.61  E-value=9.3e-17  Score=129.12  Aligned_cols=121  Identities=21%  Similarity=0.576  Sum_probs=96.5

Q ss_pred             cCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCC-
Q psy590           43 IASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN-  121 (257)
Q Consensus        43 ~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~-  121 (257)
                      ..++|.+ ++|+++.++|+|.|++||+|..        ...|+++++|....            ...+|.++++|+++. 
T Consensus         9 ~~~pC~n-g~C~~~~g~~~C~C~~G~~g~~--------~~~C~~id~C~~~~------------~~~~C~~~~~C~~~~~   67 (186)
T 1z1y_A            9 VDTICXN-GQLVQMSNHFXCMCNEGLVHLS--------ENTCEEXNECXXET------------LGXACGEFGQCIENPD   67 (186)
T ss_dssp             TTCCCBT-EEEEECSSCEEEEECTTEEEEE--------TTEEEECCCCSGGG------------TTSEEETTEEEEECSS
T ss_pred             CCCCCCC-CEeECCCCCeEeECCCCCccCC--------CCccCCCCcccCCC------------CCCCCCCCCEeecCCC
Confidence            3678985 5999999999999999999862        23477888887420            016798889999998 


Q ss_pred             ----CceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEec----cCCCCeee
Q psy590          122 ----HATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICI----PKNHGIDC  193 (257)
Q Consensus       122 ----g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~----~~~g~~~C  193 (257)
                          ++|.|.|.+||.|....                            |. +|+|..++|.++++|+    ++.++|+|
T Consensus        68 ~~~~g~y~C~C~~G~~g~~~~----------------------------C~-~d~C~~~~C~~~g~C~~~~~~~~g~~~C  118 (186)
T 1z1y_A           68 PAQVNMYXCGCIEGYTLXEDT----------------------------CV-LDVCQYXNCGESGECIVEYLSEIQSAGC  118 (186)
T ss_dssp             TTSSCSEEEEECTTEEEETTE----------------------------EE-EGGGTTCCCCTTEEEEEEEETTEEEEEE
T ss_pred             CcCCCCEECCCCCCCccCCCC----------------------------CC-CCcCcCCCCCCCCEEeeCCcCCCCCceE
Confidence                89999999999987421                            12 6889888999899999    88899999


Q ss_pred             ecCCCCcc---CCCCCcccC--cccc
Q psy590          194 QCQSGHQG---NPYIACLSE--LICL  214 (257)
Q Consensus       194 ~C~~G~~g---~~~~~C~~~--~~C~  214 (257)
                      .|++||+|   ++.. |+++  ++|.
T Consensus       119 ~C~~Gy~g~~~~~~~-C~~~~~~~C~  143 (186)
T 1z1y_A          119 SCAIGXVPNPEDEXX-CTXTGETACQ  143 (186)
T ss_dssp             EECTEEEEETTTTTE-EEEEECCCCC
T ss_pred             ECCCCCcccCCCCCc-ceEcCCCccc
Confidence            99999999   3333 8865  7776

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.61  E-value=4.6e-17  Score=128.05  Aligned_cols=139  Identities=27%  Similarity=0.538  Sum_probs=94.2

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCC--CCCCCcccCCCccCCCCCCCCC--CC
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEE--CASTEACINSQCQKPCAVHSPC--AP  113 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~e--C~~~~~c~g~~c~~~C~~~~~C--~~  113 (257)
                      +|+|+..++|. +++|+++.++|+|.|++||++.+       +...|+++++  |....              .+|  ..
T Consensus         3 ideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~-------~g~~C~d~~~~~C~~~~--------------~~c~~~~   60 (162)
T 1uzk_A            3 VNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNP-------TRVGCVDTRSGNCYLDI--------------RPRGDNG   60 (162)
T ss_dssp             CCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECT-------TSSBEECCCCEEEEEEC---------------------
T ss_pred             cccCCCCCCCC-CCEeECCCCCEEEeCCCCCeECC-------CCCcccCCCCCcccCCC--------------cccCCCC
Confidence            47787457897 68999999999999999999752       1234666665  65321              233  34


Q ss_pred             CCeeeeCCC----ceeeeCCCCCc-cCCCCCcccCCCCCCCCCCCCCCCC--CCccCC--CCCccCCCCCC--CCCCCCC
Q psy590          114 NAVCINKNH----ATDCSCLEGFQ-GNGFVGCLPVRNYQPICQYNEDCPP--DKLCDR--LNRICINPCQE--DSCGEHA  182 (257)
Q Consensus       114 ~~~C~~~~g----~~~C~C~~g~~-g~~~~~C~~~~~~~~~C~~~~~C~~--g~~~~~--~~~~~id~C~~--~~C~~~~  182 (257)
                      ++.|++..+    +|.|.|.+||. +..-..|....    .-.+.+.|++  ||.+..  ..+.+||+|..  ++|.+ +
T Consensus        61 ~~~C~~~~~~~~~~~~C~C~~G~~~~~~C~~C~~~~----~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g  135 (162)
T 1uzk_A           61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVN----TSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-G  135 (162)
T ss_dssp             ---CEEEEEEEECHHHHHTTTCCEETTTTEECCCTT----SHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-S
T ss_pred             CCcccCCcCCcccCceeeCCCCCCcCCCcccCCCCC----CCCceeECCCCCCcccCCCCCccCccccccCCCCCcCC-C
Confidence            678988776    79999999998 44211111100    0012345776  888763  45789999975  56985 7


Q ss_pred             EeccCCCCeeeecCCCCccCC
Q psy590          183 ICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       183 ~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      +|+|+.++|+|.|++||+|+.
T Consensus       136 ~C~n~~gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A          136 KCINTFGSFQCRCPTGYYLNE  156 (162)
T ss_dssp             EEEECSSCEEEECCTTCCBCT
T ss_pred             EeEcCCCCEEeeCCCCccCCC
Confidence            999999999999999999975

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=111.56  Aligned_cols=97  Identities=27%  Similarity=0.686  Sum_probs=78.6

Q ss_pred             CCCCCCCCCCCCeeccCC--Cceeeecc------------------------ccCCcCCCCCCCCEee-------eCCCC
Q psy590           13 TAKVPRPCQSDLDCLDAE--ACYSGQCE------------------------DLCAIASLCAPSAKCH-------VVKHR   59 (257)
Q Consensus        13 ~~c~~~~C~~~~~C~~~~--g~~~C~C~------------------------~~C~~~~~C~~~~~C~-------~~~g~   59 (257)
                      |+|.++||.++++|++..  ++|+|.|.                        ++|. .++|.++++|+       ++.++
T Consensus         1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~-~~~C~~~g~C~~~~~~~~~~~~~   79 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCT-PNPCHNGGTCEISEAYRGDTFIG   79 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTS-SCCCCTTCEEEECCCEETTEECC
T ss_pred             CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCC-CCCCCCCCEecCCCccccCCCCC
Confidence            479999999999999875  68999982                        3354 57899999999       56689


Q ss_pred             cEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590           60 PVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus        60 ~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      |.|.|++||.|.   .|+       .++++|..                .+|.++++|++..++|.|.|++||.|..
T Consensus        80 ~~C~C~~G~~G~---~C~-------~~i~~C~~----------------~~C~~~~~C~~~~g~~~C~C~~G~~G~~  130 (143)
T 4d90_A           80 YVCKCPRGFNGI---HCQ-------HNINECEV----------------EPCKNGGICTDLVANYSCECPGEFMGRN  130 (143)
T ss_dssp             EEEECCTTEEST---TSC-------EECCTTTT----------------CCSCTTCEEEEETTEEEEECCTTCBSTT
T ss_pred             eEeECcCCCcCC---Ccc-------cCCCcCCC----------------CCCCCCCEeECCCCCeEeECCCCCccCC
Confidence            999999999987   433       37888874                6899999999999999999999999985

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.52  E-value=2.8e-14  Score=133.08  Aligned_cols=108  Identities=25%  Similarity=0.620  Sum_probs=88.1

Q ss_pred             CCCCCCCCCCCCeeccCCC-ceee-ec-------------cccCC-cCCCCCCCC---EeeeCCCCcEee-CCCCCccCC
Q psy590           13 TAKVPRPCQSDLDCLDAEA-CYSG-QC-------------EDLCA-IASLCAPSA---KCHVVKHRPVCT-CPQGYEGNP   72 (257)
Q Consensus        13 ~~c~~~~C~~~~~C~~~~g-~~~C-~C-------------~~~C~-~~~~C~~~~---~C~~~~g~~~C~-C~~G~~g~~   72 (257)
                      ++|..+||.++++|+++.+ +|+| .|             +++|. .++.|.+++   +|+++.++|.|. |++||+|. 
T Consensus         4 DeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~-   82 (634)
T 1yo8_A            4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGN-   82 (634)
T ss_dssp             CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEEC-
T ss_pred             cccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccC-
Confidence            5788999999999999985 5999 78             37787 234499988   999999999998 99999998 


Q ss_pred             CCCccC-------CCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCC----CceeeeCCCCCccCCC
Q psy590           73 ATKCYL-------PNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN----HATDCSCLEGFQGNGF  137 (257)
Q Consensus        73 ~~~C~~-------~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~----g~~~C~C~~g~~g~~~  137 (257)
                        .|+.       .....|.++++|....              ++|.++++|+++.    ++|.|.|++||.|.+.
T Consensus        83 --~c~g~g~~~~~~dg~~C~dideC~~~~--------------~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~  142 (634)
T 1yo8_A           83 --QPVGVGLEAAKTEKQVCEPENPCKDKT--------------HNCHKHAECIYLGHFSDPMYKCECQTGYAGDGL  142 (634)
T ss_dssp             --CCEESSSHHHHSCCCCEEECCTTTTTC--------------CCCCTTEEEEECCTTCSSSEEEEECTTEEESSS
T ss_pred             --ccccccccccccCCCcccccccccCCC--------------cccccCccccccccccccceeeeccCCccccCc
Confidence              3331       1244588888887543              6899899999998    8999999999998653

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.50  E-value=5.4e-15  Score=110.10  Aligned_cols=107  Identities=23%  Similarity=0.602  Sum_probs=80.3

Q ss_pred             cccCCcCCCCCCCCEeeeC-CCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCe
Q psy590           38 EDLCAIASLCAPSAKCHVV-KHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAV  116 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~-~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~  116 (257)
                      +|+|. .++|.+  +|+++ .++|.|.|++||+|..            .++++|..           +|. ..+|.  +.
T Consensus         4 ideC~-~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~------------~~~~~C~~-----------~C~-~~~C~--~~   54 (118)
T 1dx5_I            4 VDPCF-RANCEY--QCQPLDQTSYLCVCAEGFAPIP------------HEPHRCQM-----------FCN-QTACP--AD   54 (118)
T ss_dssp             CCGGG-GCCCSS--EEEECSSSCEEEECCTTEEEET------------TEEEEEEE-----------CCC-SSEEE--CE
T ss_pred             cccCC-CCCCCC--CCCCCCCCCEEeECCCCccccC------------CCCCcccc-----------ccC-CCCCC--Cc
Confidence            36786 789974  99999 8999999999999873            12333331           111 24554  58


Q ss_pred             eeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC-CCCCCCCEeccCCCCeeeec
Q psy590          117 CINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQE-DSCGEHAICIPKNHGIDCQC  195 (257)
Q Consensus       117 C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~-~~C~~~~~C~~~~g~~~C~C  195 (257)
                      |++ .++|.|.|++||.+.....|                           .++|+|.. ++|  +++|+++.++|+|.|
T Consensus        55 C~~-~~~y~C~C~~Gy~~~~g~~C---------------------------~dideC~~~~~C--~~~C~n~~g~y~C~C  104 (118)
T 1dx5_I           55 CDP-NTQASCECPEGYILDDGFIC---------------------------TDIDECENGGFC--SGVCHNLPGTFECIC  104 (118)
T ss_dssp             ECT-TSTTCEECCTTEEEETTTEE---------------------------EECCHHHHCSSC--SSEEEECSSSEEEEE
T ss_pred             ccC-CCCeEeECCCCccCCCCCcc---------------------------ccccccCCCCCC--cCeEEeCCCCEEEEC
Confidence            887 58899999999986532223                           34888976 889  689999999999999


Q ss_pred             CCCCccCC
Q psy590          196 QSGHQGNP  203 (257)
Q Consensus       196 ~~G~~g~~  203 (257)
                      ++||+++.
T Consensus       105 ~~G~~g~~  112 (118)
T 1dx5_I          105 GPDSALAG  112 (118)
T ss_dssp             CSSSSCEE
T ss_pred             CCCCccCC
Confidence            99998764

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.40  E-value=3.7e-13  Score=103.38  Aligned_cols=102  Identities=25%  Similarity=0.579  Sum_probs=77.5

Q ss_pred             CCCCCCCeeccCCCceeeec--------------------cccCCcC--CCCCCCCEeeeCCCCcEeeCCCCCccCCCC-
Q psy590           18 RPCQSDLDCLDAEACYSGQC--------------------EDLCAIA--SLCAPSAKCHVVKHRPVCTCPQGYEGNPAT-   74 (257)
Q Consensus        18 ~~C~~~~~C~~~~g~~~C~C--------------------~~~C~~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~-   74 (257)
                      ++|.++++|+++   |+|.|                    +|+|...  ++|.+++.|+++.++|.|.|++||+|.... 
T Consensus         7 ~~C~~~~~C~~~---~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~   83 (143)
T 2bou_A            7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAK   83 (143)
T ss_dssp             TTCCTTEEESSS---SCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCS
T ss_pred             CcCCCCCEEcCC---CEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCcc
Confidence            679999999985   66665                    3566622  389988999999999999999999987210 


Q ss_pred             CccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590           75 KCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus        75 ~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      .+.......|++++||....              ++|.++++|+++.++|.|.|++||.+..
T Consensus        84 ~~~~~~~~~C~dideC~~~~--------------~~C~~~~~C~n~~g~y~C~C~~Gy~g~~  131 (143)
T 2bou_A           84 TFKNESENTCQDVDECSSGQ--------------HQCDSSTVCFNTVGSYSCRCRPGWKPRH  131 (143)
T ss_dssp             CBSSGGGCCEEECCHHHHTC--------------CCCCTTSEEEECSSCEEEECCSSSCBCT
T ss_pred             ccccCCCCCcCCccCccCcC--------------CCCCCCCEEECCCCCEEeeCCCCcccCC
Confidence            00000123578888887532              7899889999999999999999999875

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.38  E-value=5.5e-13  Score=92.64  Aligned_cols=76  Identities=26%  Similarity=0.682  Sum_probs=61.6

Q ss_pred             CCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccC
Q psy590           84 CVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCD  163 (257)
Q Consensus        84 C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~  163 (257)
                      |+++++|..               ..+|.+ +.|+++.++|.|.|++||.+.+.                          
T Consensus         2 C~dideC~~---------------~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~--------------------------   39 (82)
T 1emn_A            2 AVDMDECKE---------------PDVCKH-GQCINTDGSYRCECPFGYILAGN--------------------------   39 (82)
T ss_dssp             CCCCCSSSS---------------TTSCSS-SEECCCSSCCCEECCTTEEEETT--------------------------
T ss_pred             CCccccCCC---------------CCCcCC-CEEEecCCCEEEECCCCeECCCC--------------------------
Confidence            677888874               267874 89999999999999999985431                          


Q ss_pred             CCCCccCCCCC-CCCCCCCCEeccCCCCeeeecCCCCccCCC
Q psy590          164 RLNRICINPCQ-EDSCGEHAICIPKNHGIDCQCQSGHQGNPY  204 (257)
Q Consensus       164 ~~~~~~id~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~  204 (257)
                        .|.++|+|. .++|.+ ++|+++.++|+|.|++||+|+..
T Consensus        40 --~C~dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g~~~   78 (82)
T 1emn_A           40 --ECVDTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPGPM   78 (82)
T ss_dssp             --EEEECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCCCSS
T ss_pred             --ccCCcccccCCCCCCC-CEeECCCCCEEeECCCCeEeCCC
Confidence              133488897 578975 69999999999999999998764

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.37  E-value=1.7e-14  Score=111.44  Aligned_cols=51  Identities=20%  Similarity=0.439  Sum_probs=37.6

Q ss_pred             CCCCCCCCCcc-CCCCCccCCCCCC--CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          152 YNEDCPPDKLC-DRLNRICINPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       152 ~~~~C~~g~~~-~~~~~~~id~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      +.+.|++||.. .+..|.+||+|..  ++|.+ ++|+++.++|+|.|++||+|+.
T Consensus        88 ~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A           88 VDPICGKGYSRIKGTQCEDIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGMTLDA  141 (147)
T ss_dssp             CCTTTCTTEEEEETTEEEECCHHHHSTTCSSS-SEEEEETTEEEEECCTTCCBCT
T ss_pred             CcccCCCccccCCCCccCccccccCCCCCCCC-CEEECCCCCEEeeCCCCCccCC
Confidence            34455555542 2334567999975  45985 6999999999999999999875

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.29  E-value=3.7e-12  Score=110.72  Aligned_cols=141  Identities=24%  Similarity=0.585  Sum_probs=54.4

Q ss_pred             CCCCCCCeeccCCCceeeecc-----ccCCc---CCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCC
Q psy590           18 RPCQSDLDCLDAEACYSGQCE-----DLCAI---ASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEE   89 (257)
Q Consensus        18 ~~C~~~~~C~~~~g~~~C~C~-----~~C~~---~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~e   89 (257)
                      ++|.++|+|.+   .+.|.|.     +.|+.   ..+|.+++.|++   .+.|.|.+||+|.   .|+.         +.
T Consensus       153 ~~C~~~G~C~~---~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~---~~~C~C~~G~~G~---~C~~---------~~  214 (324)
T 2ygq_A          153 GGCRNGGFCNE---RRICECPDGFHGPHCEKALCTPRCMNGGLCVT---PGFCICPPGFYGV---NCDK---------AN  214 (324)
T ss_dssp             SCCCSSCEECT---TSCEECCTTEESSSSCEESSSSCCCTTCEECS---SCCEECCTTCBTT---TTCB---------CC
T ss_pred             CCCCCCCEECC---CCeEECCCCCcCCCCCCCCCCCCCCCCCEEcC---CCEEeCCCCccCC---Cccc---------Cc
Confidence            57888888875   3677773     22321   246777888864   3678888888887   4431         12


Q ss_pred             CCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCC--CcccCCCCCCCCC--CCCCCCCCCccCCC
Q psy590           90 CASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFV--GCLPVRNYQPICQ--YNEDCPPDKLCDRL  165 (257)
Q Consensus        90 C~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~--~C~~~~~~~~~C~--~~~~C~~g~~~~~~  165 (257)
                      |.                 .+|.+++.|++.   +.|.|.+||.|..-.  .|...-.+++.|.  +.+.|++||.|...
T Consensus       215 C~-----------------~~C~~~G~C~~~---~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~~~~C~C~~G~~G~~C  274 (324)
T 2ygq_A          215 CS-----------------TTCFNGGTCFYP---GKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLC  274 (324)
T ss_dssp             CS-----------------SCCCSSCCBSCS---SCBCCCTTCCTTTTC-------------------------------
T ss_pred             CC-----------------CCCCCCCeeCCC---CeeeCCCCccCCCCCcCcCCCcCCCCCEECCCCEEECCCCCcCCCC
Confidence            32                 467777888753   679999999887521  1221111233444  35668888887653


Q ss_pred             CCccCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          166 NRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       166 ~~~~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      .   ++.|. .+|.++++|++   .++|.|++||+|..
T Consensus       275 ~---~~~C~-~~C~~~g~C~~---~~~C~C~~G~~G~~  305 (324)
T 2ygq_A          275 S---KPVCE-PGCGAHGTCHE---PNKCQCQEGWHGRH  305 (324)
T ss_dssp             --------------------------------------
T ss_pred             c---CCCCC-CCCCCCCEECC---CCEeECCCCCcCCC
Confidence            2   45665 56888889986   47899999999886

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.28  E-value=2.3e-15  Score=125.83  Aligned_cols=146  Identities=7%  Similarity=-0.001  Sum_probs=92.0

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCC------CCC-----ccc-CCCccC--C
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECA------STE-----ACI-NSQCQK--P  104 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~------~~~-----~c~-g~~c~~--~  104 (257)
                      ++|. ..+|.++++|++...+|+|.|+.||+|.   +|+       .++++|.      ..+     .|+ |.+|..  .
T Consensus       100 ~eC~-s~pC~ngG~C~~~~~sy~C~C~~Gf~G~---~Ce-------~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~  168 (267)
T 4fbr_A          100 IVAV-SIKSNDGGKTLTGTTTYNGEGPIGFKSE---VTD-------GDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVI  168 (267)
T ss_dssp             EEEE-EEECSSTTSEEEEEEEETTSCCEEEEEE---ECC-------CCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEE
T ss_pred             cccC-CCCCCCCCEEecCCccEEeeCCCCcccc---CCC-------CCcccccccCCcCCccccCCcceecccccccccc
Confidence            4455 5789999999999999999999999998   666       2334422      211     222 555541  2


Q ss_pred             CCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccC-CC--CCCCCCCCCCCCCCCccCCCCCcc---CCCCCCCCC
Q psy590          105 CAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPV-RN--YQPICQYNEDCPPDKLCDRLNRIC---INPCQEDSC  178 (257)
Q Consensus       105 C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~-~~--~~~~C~~~~~C~~g~~~~~~~~~~---id~C~~~~C  178 (257)
                      |. ..+|.++++|++...+|+|.|++||+|..   |... ++  .+..| ....|..+.... ..+.+   ++.| ..+|
T Consensus       169 c~-~~~c~ngg~C~dg~~~y~C~Cp~Gf~G~~---c~~~i~ec~~~~~c-~~~~c~~gG~~~-~~C~~g~n~~~c-~~~c  241 (267)
T 4fbr_A          169 NV-DAKSNDGGKTLSGTMTYNGEGPIGFRGTL---TSPDTYTVENQWGG-STAPWNPGGFWM-IGARNGQNVVAL-NVAS  241 (267)
T ss_dssp             EE-EEECSSTTSEEEEEEEETTSCCEEEEEEE---EETTEEEEEEECSC-TTSCCEEEEEEE-CCCCTTCCEEEE-EEEC
T ss_pred             cC-CCCCCCCCEeeCCCCCeEEeCCCCccccc---cccccceeccCCCc-cCCcccCCCeEE-EecCCCCccccC-CcCC
Confidence            22 46789999999999999999999999874   2221 10  00001 111122211100 00000   1112 2468


Q ss_pred             CCCCEeccCCCCeeeecCCCCccC
Q psy590          179 GEHAICIPKNHGIDCQCQSGHQGN  202 (257)
Q Consensus       179 ~~~~~C~~~~g~~~C~C~~G~~g~  202 (257)
                      .++++|++...+|+|.|+.||+|.
T Consensus       242 ~ngGtC~dg~~sy~CeCp~GF~G~  265 (267)
T 4fbr_A          242 SDGGKTLAGTMIYNGEGPIGFRAR  265 (267)
T ss_dssp             SSTTSEEEEEEEETTSCCEEEEEE
T ss_pred             CCCCEeeCCCcceeecCCCCcccc
Confidence            899999999899999999999874

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.28  E-value=1.2e-15  Score=127.53  Aligned_cols=150  Identities=7%  Similarity=-0.044  Sum_probs=102.2

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCC------CCCCC-----cc-cCCCcc--CCCCCCCC
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEE------CASTE-----AC-INSQCQ--KPCAVHSP  110 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~e------C~~~~-----~c-~g~~c~--~~C~~~~~  110 (257)
                      .+|.++++|++..++|.|.|++||+|.   +|+       .++++      |...+     .| .|..|+  ++|. ..+
T Consensus        38 ~~c~ngG~C~~g~~~y~C~Cp~Gf~G~---~Ce-------~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~-s~p  106 (267)
T 4fbr_A           38 IKSDDGGKTLKGTMTYNGEGPIGFRGT---LSS-------ANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAV-SIK  106 (267)
T ss_dssp             EECSSTTSEEEEEEEETTSCCEEEEEE---ECS-------TTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEE-EEE
T ss_pred             CCcCCCCeecCCCCCeEEeCCCCcccc---ccc-------ccccccccccCcCCCcccCCCeeeccCccccccccC-CCC
Confidence            578899999999999999999999998   676       33444      33222     23 255664  4576 688


Q ss_pred             CCCCCeeeeCCCceeeeCCCCCccCCCC----CcccCC-CCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEec
Q psy590          111 CAPNAVCINKNHATDCSCLEGFQGNGFV----GCLPVR-NYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICI  185 (257)
Q Consensus       111 C~~~~~C~~~~g~~~C~C~~g~~g~~~~----~C~~~~-~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~  185 (257)
                      |.++++|++...+|.|.|+.||+|..-.    .|+... .....|.....|..|..+..     ...|.+.+|.++++|+
T Consensus       107 C~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~-----~i~c~~~~c~ngg~C~  181 (267)
T 4fbr_A          107 SNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQ-----NVINVDAKSNDGGKTL  181 (267)
T ss_dssp             CSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTS-----CEEEEEEECSSTTSEE
T ss_pred             CCCCCEEecCCccEEeeCCCCccccCCCCCcccccccCCcCCccccCCcceeccccccc-----ccccCCCCCCCCCEee
Confidence            9999999999999999999999987411    111110 01112222222333333322     1235567899999999


Q ss_pred             cCCCCeeeecCCCCccCCCCCcc-cCccc
Q psy590          186 PKNHGIDCQCQSGHQGNPYIACL-SELIC  213 (257)
Q Consensus       186 ~~~g~~~C~C~~G~~g~~~~~C~-~~~~C  213 (257)
                      +...+|+|.|++||+|..   |. ++++|
T Consensus       182 dg~~~y~C~Cp~Gf~G~~---c~~~i~ec  207 (267)
T 4fbr_A          182 SGTMTYNGEGPIGFRGTL---TSPDTYTV  207 (267)
T ss_dssp             EEEEEETTSCCEEEEEEE---EETTEEEE
T ss_pred             CCCCCeEEeCCCCccccc---ccccccee
Confidence            999999999999999976   76 45554

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.26  E-value=3.5e-12  Score=90.26  Aligned_cols=87  Identities=20%  Similarity=0.424  Sum_probs=66.9

Q ss_pred             CcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCC
Q psy590           59 RPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFV  138 (257)
Q Consensus        59 ~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~  138 (257)
                      +|.|.|.+||+|.   .|         ++++|..                .+|      ++..++|.|.|++||.     
T Consensus         1 sy~C~C~~g~~g~---~c---------~~~~c~~----------------~pC------~n~~~~y~C~C~~G~~-----   41 (91)
T 1tpg_A            1 SYQVICRDEKTQM---IY---------QQHQSWL----------------RPV------LRSNRVEYCWCNSGRA-----   41 (91)
T ss_dssp             CCCCCCBCSSSCC---BC---------CSSCEEE----------------EEC------SSSSCEEEEECSSSCC-----
T ss_pred             CeeeECCCCCcCC---eE---------CCCcccC----------------Ccc------ccCCCCcEeECCCCCc-----
Confidence            5889999999986   32         3555553                344      4567899999999996     


Q ss_pred             CcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCC--CCeeeecCCCCccCCCCCcc-cCcc
Q psy590          139 GCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKN--HGIDCQCQSGHQGNPYIACL-SELI  212 (257)
Q Consensus       139 ~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~~C~-~~~~  212 (257)
                      .|+.                         .++|+|.+++|.++++|++..  ++|+|.|++||+|..   |+ +++|
T Consensus        42 ~C~~-------------------------~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~---Ce~~ide   90 (91)
T 1tpg_A           42 QCHS-------------------------VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKS---CEIDTRA   90 (91)
T ss_dssp             BCCE-------------------------ECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCBSSS---CCBCSSC
T ss_pred             cccc-------------------------CcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCcCCc---CCcCCCC
Confidence            2431                         127899999999999999987  899999999999986   76 5553

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.18  E-value=6e-12  Score=93.46  Aligned_cols=95  Identities=24%  Similarity=0.589  Sum_probs=74.5

Q ss_pred             CCCCCCCCCCCCCeeccC-CCceeeecc----------ccCCc---CCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCcc
Q psy590           12 GTAKVPRPCQSDLDCLDA-EACYSGQCE----------DLCAI---ASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        12 ~~~c~~~~C~~~~~C~~~-~g~~~C~C~----------~~C~~---~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .|+|..+||.+  +|+++ .++|+|.|.          ++|..   ..+|.  +.|++ .++|.|.|++||++..     
T Consensus         4 ideC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~-----   73 (118)
T 1dx5_I            4 VDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDD-----   73 (118)
T ss_dssp             CCGGGGCCCSS--EEEECSSSCEEEECCTTEEEETTEEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEET-----
T ss_pred             cccCCCCCCCC--CCCCCCCCCEEeECCCCccccCCCCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCC-----
Confidence            46888999985  99999 899999993          34541   33443  68887 5889999999999652     


Q ss_pred             CCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590           78 LPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus        78 ~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                         ...|++++||..               .++|  +++|+++.++|.|.|++||.+..
T Consensus        74 ---g~~C~dideC~~---------------~~~C--~~~C~n~~g~y~C~C~~G~~g~~  112 (118)
T 1dx5_I           74 ---GFICTDIDECEN---------------GGFC--SGVCHNLPGTFECICGPDSALAG  112 (118)
T ss_dssp             ---TTEEEECCHHHH---------------CSSC--SSEEEECSSSEEEEECSSSSCEE
T ss_pred             ---CCccccccccCC---------------CCCC--cCeEEeCCCCEEEECCCCCccCC
Confidence               124778898874               2678  58999999999999999998764

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.18  E-value=1.2e-11  Score=86.65  Aligned_cols=68  Identities=29%  Similarity=0.718  Sum_probs=53.5

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCC--CCCCCEecc
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDS--CGEHAICIP  186 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~--C~~~~~C~~  186 (257)
                      .+|.+ +.|+++.++|.|.|++||.+....                         +..|.+||+|..++  |. +++|+|
T Consensus        11 ~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~-------------------------g~~C~dideC~~~~~~C~-~~~C~n   63 (86)
T 1lmj_A           11 DLCGR-GQCVNTPGDFECKCDEGYESGFMM-------------------------MKNCMDIDECQRDPLLCR-GGVCHN   63 (86)
T ss_dssp             STTTT-SCEEEETTEEEECCCSSEEECTTT-------------------------SSSEEECCHHHHCSSTTT-TSEEEE
T ss_pred             CCCCC-CEEECCCCCEEeeCCCCcCccCCC-------------------------CCccCCcccccCCCCcCC-CCEeEc
Confidence            56864 699999999999999999865210                         11244588997655  65 589999


Q ss_pred             CCCCeeeecCCCCccCC
Q psy590          187 KNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       187 ~~g~~~C~C~~G~~g~~  203 (257)
                      +.++|+|.|++||++..
T Consensus        64 ~~g~y~C~C~~G~~~~~   80 (86)
T 1lmj_A           64 TEGSYRCECPPGHQLSP   80 (86)
T ss_dssp             ETTEEEEESCTTSCCCS
T ss_pred             CCCCEEEECcCCcccCC
Confidence            99999999999999864

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.17  E-value=3.3e-11  Score=83.53  Aligned_cols=73  Identities=30%  Similarity=0.694  Sum_probs=59.9

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCee
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVC  117 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C  117 (257)
                      +|+|...++|.+ +.|+++.++|.|.|++||++.+         ..|+++++|..               .++|.+ ++|
T Consensus         5 ideC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g---------~~C~dideC~~---------------~~~C~~-~~C   58 (82)
T 1emn_A            5 MDECKEPDVCKH-GQCINTDGSYRCECPFGYILAG---------NECVDTDECSV---------------GNPCGN-GTC   58 (82)
T ss_dssp             CCSSSSTTSCSS-SEECCCSSCCCEECCTTEEEET---------TEEEECCGGGT---------------CCTTSS-SCE
T ss_pred             cccCCCCCCcCC-CEEEecCCCEEEECCCCeECCC---------CccCCcccccC---------------CCCCCC-CEe
Confidence            477874478875 8999999999999999998642         24778899974               267875 699


Q ss_pred             eeCCCceeeeCCCCCccCC
Q psy590          118 INKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       118 ~~~~g~~~C~C~~g~~g~~  136 (257)
                      +++.++|.|.|++||.+..
T Consensus        59 ~n~~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A           59 KNVIGGFECTCEEGFEPGP   77 (82)
T ss_dssp             EECSSSEEECCSSSSCCCS
T ss_pred             ECCCCCEEeECCCCeEeCC
Confidence            9999999999999999875

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.17  E-value=7.4e-12  Score=98.86  Aligned_cols=121  Identities=23%  Similarity=0.469  Sum_probs=80.5

Q ss_pred             CCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCC-CCCeeeeCCCce
Q psy590           46 LCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCA-PNAVCINKNHAT  124 (257)
Q Consensus        46 ~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~-~~~~C~~~~g~~  124 (257)
                      .|..++.|..   ...|.|.+||+|.   .|+.         ++|.                 ..|. .++.|++   .+
T Consensus        39 ~c~~~g~C~~---~g~C~C~~G~~G~---~C~~---------~~C~-----------------~~C~~~~g~C~~---~~   83 (169)
T 2vj2_A           39 DFFGHYACDQ---NGNKTCMEGWMGP---ECNR---------AICR-----------------QGCSPKHGSCKL---PG   83 (169)
T ss_dssp             ETTEEEEECS---SCCEEECTTEEST---TSCE---------ECCC-----------------TTCCTTTEECSS---TT
T ss_pred             CcCCCCEeCC---CCeeECCCCCcCC---CCCC---------CCCC-----------------CCCCCCCcccCC---CC
Confidence            4555667742   3468888888887   4431         1232                 2343 3466754   46


Q ss_pred             eeeCCCCCccCCCCCcccCC-CCCCCCC--CCCCCCCCCccCCCCCc-cCCCCCC-CCCCCCCEeccC-CCCeeeecCCC
Q psy590          125 DCSCLEGFQGNGFVGCLPVR-NYQPICQ--YNEDCPPDKLCDRLNRI-CINPCQE-DSCGEHAICIPK-NHGIDCQCQSG  198 (257)
Q Consensus       125 ~C~C~~g~~g~~~~~C~~~~-~~~~~C~--~~~~C~~g~~~~~~~~~-~id~C~~-~~C~~~~~C~~~-~g~~~C~C~~G  198 (257)
                      .|+|.+||.|..-..|.... ..++.|.  +.+.|++||.|..  |. ++++|.. ++|.++++|+++ .++|+|.|++|
T Consensus        84 ~C~C~~G~~G~~C~~C~~~~~C~~g~C~~~~~C~C~~G~~G~~--C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G  161 (169)
T 2vj2_A           84 DCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQL--CDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEG  161 (169)
T ss_dssp             CCEECTTEESSSSCEECCCTTCSSEECSSTTCCEECTTEETTT--TCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTT
T ss_pred             eeECCCCCCCCCcccCCCCCCCCCCCcCCCCEEeCCCCCCCCc--ccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCC
Confidence            88888998887533333322 1122443  4566788887653  44 6888975 799999999997 88999999999


Q ss_pred             CccCC
Q psy590          199 HQGNP  203 (257)
Q Consensus       199 ~~g~~  203 (257)
                      |+|+.
T Consensus       162 ~~G~~  166 (169)
T 2vj2_A          162 YSGPN  166 (169)
T ss_dssp             CCSTT
T ss_pred             CcCcC
Confidence            99986

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.16  E-value=1.7e-11  Score=86.05  Aligned_cols=64  Identities=31%  Similarity=0.635  Sum_probs=50.1

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKN  188 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~  188 (257)
                      .+| ++++|+++.++|.|.|++||.+....                          ..|.++|+|..++|.  ++|+++.
T Consensus        11 ~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g--------------------------~~C~dideC~~~~C~--~~C~n~~   61 (87)
T 1z6c_A           11 SIC-GTAVCKNIPGDFECECPEGYRYNLKS--------------------------KSCEDIDECSENMCA--QLCVNYP   61 (87)
T ss_dssp             SSB-TTSSCCCBTTBCCCSSSTTCEEETTT--------------------------TEEECCCHHHHSCCS--SEECCCS
T ss_pred             CCC-CCCEeECCCCCEEEECCCCceECCCC--------------------------CcCCCcCeeCCCCCC--CEEEccC
Confidence            448 67899999999999999999865311                          123348899888897  6999999


Q ss_pred             CCeeeecC--CCCcc
Q psy590          189 HGIDCQCQ--SGHQG  201 (257)
Q Consensus       189 g~~~C~C~--~G~~g  201 (257)
                      ++|+|.|+  .||..
T Consensus        62 g~y~C~C~g~~G~~~   76 (87)
T 1z6c_A           62 GGYTCYCDGKKGFKL   76 (87)
T ss_dssp             SSCCEECCSSSCCBC
T ss_pred             CCEEEECCCCcCCcc
Confidence            99999995  55553

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.09  E-value=7.6e-11  Score=90.73  Aligned_cols=83  Identities=23%  Similarity=0.657  Sum_probs=60.6

Q ss_pred             CCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCcc
Q psy590           83 GCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLC  162 (257)
Q Consensus        83 ~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~  162 (257)
                      .|.++++|..                ++|.++++|++..++|.|.|++||.|..   |.+                    
T Consensus        44 ~c~dideC~~----------------~pC~n~g~C~~~~~~y~C~C~~G~~G~~---C~~--------------------   84 (146)
T 1x7a_L           44 QYVDGDQCEP----------------NPCLNGGLCKDDINSYECWCQVGFEGKN---CEL--------------------   84 (146)
T ss_dssp             ------CCSS----------------CSSCTTCEEEECSSCEEEECCSSEESTT---TCE--------------------
T ss_pred             cCCCcCcCCC----------------CCCCCCCEeECCCCCEEEecCCCCcCCc---CCC--------------------
Confidence            4778888874                7899999999999999999999999762   322                    


Q ss_pred             CCCCCccCCCCCCC--CCCCCCEe-ccCCCCeeeecCCCCccCCC-CCcccCccc
Q psy590          163 DRLNRICINPCQED--SCGEHAIC-IPKNHGIDCQCQSGHQGNPY-IACLSELIC  213 (257)
Q Consensus       163 ~~~~~~~id~C~~~--~C~~~~~C-~~~~g~~~C~C~~G~~g~~~-~~C~~~~~C  213 (257)
                             +|+|..+  +|.+  +| +++.++|+|.|++||++... ..|.++++.
T Consensus        85 -------~deC~~~~~~C~~--~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~~~~  130 (146)
T 1x7a_L           85 -------DATCNIKNGRCKQ--FCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF  130 (146)
T ss_dssp             -------ECCTTSGGGSCSS--BCCCCSSSCCCCBCCTTEEECTTSSSEEECSSS
T ss_pred             -------CccccCCCCCCcC--CCCCCCCCCEEeEcCCCcEeCCCCCcCCCCCCC
Confidence                   6788753  5654  89 99999999999999994332 248877653

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.09  E-value=6.2e-11  Score=82.90  Aligned_cols=77  Identities=27%  Similarity=0.573  Sum_probs=60.1

Q ss_pred             cccCC-cCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCe
Q psy590           38 EDLCA-IASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAV  116 (257)
Q Consensus        38 ~~~C~-~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~  116 (257)
                      +|+|+ .+++|.+ +.|+++.++|.|.|++||++...      ....|++++||...+              ..|. +++
T Consensus         3 ideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~------~g~~C~dideC~~~~--------------~~C~-~~~   60 (86)
T 1lmj_A            3 IDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFM------MMKNCMDIDECQRDP--------------LLCR-GGV   60 (86)
T ss_dssp             CCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTT------TSSSEEECCHHHHCS--------------STTT-TSE
T ss_pred             cccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCC------CCCccCCcccccCCC--------------CcCC-CCE
Confidence            36787 2456965 59999999999999999986521      134578899997532              4575 579


Q ss_pred             eeeCCCceeeeCCCCCccCC
Q psy590          117 CINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       117 C~~~~g~~~C~C~~g~~g~~  136 (257)
                      |+++.++|.|.|++||.+..
T Consensus        61 C~n~~g~y~C~C~~G~~~~~   80 (86)
T 1lmj_A           61 CHNTEGSYRCECPPGHQLSP   80 (86)
T ss_dssp             EEEETTEEEEESCTTSCCCS
T ss_pred             eEcCCCCEEEECcCCcccCC
Confidence            99999999999999999874

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.06  E-value=2.2e-10  Score=108.32  Aligned_cols=148  Identities=20%  Similarity=0.486  Sum_probs=96.1

Q ss_pred             CCCCCCCCCCCeeccCCCcee---eecc--------------------ccCCcC---CCCCCCCEeeeCCCCcEeeCC--
Q psy590           14 AKVPRPCQSDLDCLDAEACYS---GQCE--------------------DLCAIA---SLCAPSAKCHVVKHRPVCTCP--   65 (257)
Q Consensus        14 ~c~~~~C~~~~~C~~~~g~~~---C~C~--------------------~~C~~~---~~C~~~~~C~~~~g~~~C~C~--   65 (257)
                      +|..+||.+++.|.+..|.|.   |.|.                    ++|...   .+|.+++.|++    +.|.|.  
T Consensus       436 ~C~~~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----g~C~C~~~  511 (690)
T 3fcs_B          436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHSS  511 (690)
T ss_dssp             GGGTTCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS----SSEEECCC
T ss_pred             CCcCCCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC----CeeEeecC
Confidence            588999999999998888887   7772                    346521   35888899973    579999  


Q ss_pred             --CCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCC-----
Q psy590           66 --QGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFV-----  138 (257)
Q Consensus        66 --~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~-----  138 (257)
                        +||.|.   .|+       .++++|....             ..+|.+++.|++    +.|.|.+||.|....     
T Consensus       512 ~~~Gy~G~---~Ce-------~~~~~C~~~~-------------~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~  564 (690)
T 3fcs_B          512 DFGKITGK---YCE-------CDDFSCVRYK-------------GEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRT  564 (690)
T ss_dssp             SSCCCBST---TSC-------BCSSCCCBSS-------------SSBGGGSEEEET----TEEEECTTEESSSSCEECCC
T ss_pred             CCCCeeCC---CcC-------cccCcCcCCC-------------CCCCCCCCEecC----CeeECcCCCcCCCCccCCCC
Confidence              999998   665       2345565321             257888889976    689999999998522     


Q ss_pred             -CcccCC----CCCCCCC-CCCCC-CCCCccCCCCCccCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          139 -GCLPVR----NYQPICQ-YNEDC-PPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       139 -~C~~~~----~~~~~C~-~~~~C-~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                       .|....    ..++.|. ..+.| .+||.|....  .-..| +++|.+++.|++        |..||+|..
T Consensus       565 ~~C~~~~g~~C~~~G~C~~g~C~C~~~Gy~G~~Ce--~C~~C-~~~C~~~g~Cv~--------C~~g~tG~~  625 (690)
T 3fcs_B          565 DTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCE--KCPTC-PDACTFKKECVE--------CKKFDRGAL  625 (690)
T ss_dssp             TTTBCTTSSBTSSSCEEETTEEECCSTTCBSTTSC--BCTTS-CCTTTSCCGGGT--------TTTTCCSSS
T ss_pred             CcccCCCCCCCCCCCEEeCCEEECCCCCccCCCcC--cCCCC-CCCCCCCCCccc--------CCCCCccCC
Confidence             122100    0112222 13446 6777765422  11334 366777777765        777777763

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.04  E-value=1.9e-10  Score=84.76  Aligned_cols=74  Identities=23%  Similarity=0.564  Sum_probs=55.5

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCC--CCCCCCEecc
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQED--SCGEHAICIP  186 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~--~C~~~~~C~~  186 (257)
                      ..|.++++|++..++|.|.|.+||.|..   |+++.                        ++++|..+  .|.  .+|++
T Consensus        20 ~~C~~~g~C~~~~~~y~C~C~~G~~G~~---C~~~~------------------------~~~~C~~~~~~C~--~~C~n   70 (114)
T 1aut_L           20 SLCCGHGTCIDGIGSFSCDCRSGWEGRF---CQREV------------------------SFLNCSLDNGGCT--HYCLE   70 (114)
T ss_dssp             STTTTSEEECCCSSCCCEEECTTEESTT---SCEEC------------------------CSSSSSSGGGGCS--SEEEE
T ss_pred             ccCCCcCCCCCCCCCcEeeCCCCCcCCC---cCcCC------------------------cCCcCcCCCCCCC--CEeEC
Confidence            3488889999999999999999999883   43321                        14577643  354  39999


Q ss_pred             CCCCeeeecCCCCccCCC-CCcccCc
Q psy590          187 KNHGIDCQCQSGHQGNPY-IACLSEL  211 (257)
Q Consensus       187 ~~g~~~C~C~~G~~g~~~-~~C~~~~  211 (257)
                      +.++|+|.|++||++... ..|.+++
T Consensus        71 ~~g~y~C~C~~G~~~~~~g~~C~~~~   96 (114)
T 1aut_L           71 EVGWRRCSCAPGYKLGDDLLQCHPAV   96 (114)
T ss_dssp             CSSSEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCCEEeECCCCeeECCCCCccCcCc
Confidence            999999999999997543 3477554

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.99  E-value=7.6e-10  Score=96.09  Aligned_cols=117  Identities=27%  Similarity=0.687  Sum_probs=60.5

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCce
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHAT  124 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~  124 (257)
                      .+|.+++.|.+   .+.|.|.+||.|.   .|+.         +.|.                 .+|.+++.|+.   .+
T Consensus       153 ~~C~~~G~C~~---~~~C~C~~G~~G~---~C~~---------~~C~-----------------~~C~~~G~C~~---~~  197 (324)
T 2ygq_A          153 GGCRNGGFCNE---RRICECPDGFHGP---HCEK---------ALCT-----------------PRCMNGGLCVT---PG  197 (324)
T ss_dssp             SCCCSSCEECT---TSCEECCTTEESS---SSCE---------ESSS-----------------SCCCTTCEECS---SC
T ss_pred             CCCCCCCEECC---CCeEECCCCCcCC---CCCC---------CCCC-----------------CCCCCCCEEcC---CC
Confidence            68999999974   4789999999997   5541         2343                 46888899975   46


Q ss_pred             eeeCCCCCccCCC--CCcccCCCCCCCCC--CCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCCCCeeeecCCCCc
Q psy590          125 DCSCLEGFQGNGF--VGCLPVRNYQPICQ--YNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQ  200 (257)
Q Consensus       125 ~C~C~~g~~g~~~--~~C~~~~~~~~~C~--~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~  200 (257)
                      .|.|.+||.|..-  ..|...-.+++.|.  ..+.|++||.|....   +++|. ++|.++++|+.   .++|.|++||+
T Consensus       198 ~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~---~~~C~-~~C~~~g~C~~---~~~C~C~~G~~  270 (324)
T 2ygq_A          198 FCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCE---ISKCP-QPCRNGGKCIG---KSKCKCSKGYQ  270 (324)
T ss_dssp             CEECCTTCBTTTTCBCCCSSCCCSSCCBSCSSCBCCCTTCCTTTTC----------------------------------
T ss_pred             EEeCCCCccCCCcccCcCCCCCCCCCeeCCCCeeeCCCCccCCCCC---cCcCC-CcCCCCCEECC---CCEEECCCCCc
Confidence            8999999998852  12332111344554  356789999987532   56675 67988899984   57999999999


Q ss_pred             cCC
Q psy590          201 GNP  203 (257)
Q Consensus       201 g~~  203 (257)
                      |+.
T Consensus       271 G~~  273 (324)
T 2ygq_A          271 GDL  273 (324)
T ss_dssp             ---
T ss_pred             CCC
Confidence            986

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.99  E-value=1.1e-11  Score=95.60  Aligned_cols=101  Identities=18%  Similarity=0.458  Sum_probs=68.9

Q ss_pred             CCCCCCCCCCCCCeeccCCCceeeeccccCCc---CCCCCC-----------CCEe-------------eeCCCC-----
Q psy590           12 GTAKVPRPCQSDLDCLDAEACYSGQCEDLCAI---ASLCAP-----------SAKC-------------HVVKHR-----   59 (257)
Q Consensus        12 ~~~c~~~~C~~~~~C~~~~g~~~C~C~~~C~~---~~~C~~-----------~~~C-------------~~~~g~-----   59 (257)
                      .|+|.++||.+ ++|+++.++|+|.|...-..   ...|..           +..|             .+..+.     
T Consensus         4 ideC~~~pC~n-g~C~n~~g~y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~~g~~~g~~   82 (147)
T 2w86_A            4 IDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSP   82 (147)
T ss_dssp             CCGGGGCCSBT-SEEEEETTEEEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTTTCSEETTT
T ss_pred             CccCcCCCCCC-CEeECCCCCEEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCccccCCccccCcCcccCCC
Confidence            46788999985 79999999999999522110   001100           1122             222222     


Q ss_pred             -----cEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCcc
Q psy590           60 -----PVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQG  134 (257)
Q Consensus        60 -----~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g  134 (257)
                           |.|.|++||++..        ...|++++||...+              .+|.+ ++|+++.++|.|.|++||.+
T Consensus        83 C~~c~~~C~C~~Gy~~~~--------g~~C~dideC~~~~--------------~~C~~-g~C~n~~g~y~C~C~~Gy~g  139 (147)
T 2w86_A           83 CTLCQVDPICGKGYSRIK--------GTQCEDIDECEVFP--------------GVCKN-GLCVNTRGSFKCQCPSGMTL  139 (147)
T ss_dssp             TEECCCCTTTCTTEEEEE--------TTEEEECCHHHHST--------------TCSSS-SEEEEETTEEEEECCTTCCB
T ss_pred             cccCCCcccCCCccccCC--------CCccCccccccCCC--------------CCCCC-CEEECCCCCEEeeCCCCCcc
Confidence                 6788999997421        12477899997532              66884 69999999999999999998


Q ss_pred             CC
Q psy590          135 NG  136 (257)
Q Consensus       135 ~~  136 (257)
                      ..
T Consensus       140 ~~  141 (147)
T 2w86_A          140 DA  141 (147)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.98  E-value=2.7e-10  Score=87.29  Aligned_cols=75  Identities=20%  Similarity=0.445  Sum_probs=54.9

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCC---Eec
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHA---ICI  185 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~---~C~  185 (257)
                      ++|.++++|++..++|.|.|++||.|..   |..                          ++++|...++.+++   +|+
T Consensus        53 ~pC~n~g~C~~~~g~y~C~C~~G~~G~~---C~~--------------------------~~~~c~~c~~~~~~C~~~C~  103 (142)
T 2c4f_L           53 SPCQNGGSCKDQLQSYICFCLPAFEGRN---CET--------------------------HKDDQLICVNENGGCEQYCS  103 (142)
T ss_dssp             CCCCTTCEEEEETTEEEEECCTTEESTT---SCE--------------------------EGGGCCSTTTGGGGCSSEEE
T ss_pred             CCcCCCCEEeCCCCCEEeeCCCCccCCc---ccc--------------------------CccccccccCCCCCccCEeE
Confidence            7899999999999999999999999873   322                          03443322333333   899


Q ss_pred             cCCC-CeeeecCCCCccCCC-CCcccCcc
Q psy590          186 PKNH-GIDCQCQSGHQGNPY-IACLSELI  212 (257)
Q Consensus       186 ~~~g-~~~C~C~~G~~g~~~-~~C~~~~~  212 (257)
                      ++.+ +|+|.|++||++... ..|.++++
T Consensus       104 ~~~g~~y~C~C~~Gy~l~~dG~~C~~~~e  132 (142)
T 2c4f_L          104 DHTGTKRSCRCHEGYSLLADGVSCTPTVE  132 (142)
T ss_dssp             CCTTSCCEEECCTTEEECTTSSCEEESSS
T ss_pred             CCCCCCEEEECCCCceECCCCCCCCCCCc
Confidence            9999 999999999994321 23887765

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.98  E-value=4.5e-11  Score=93.63  Aligned_cols=107  Identities=21%  Similarity=0.443  Sum_probs=70.2

Q ss_pred             CCCCC-CCCCCCCCeeccCCCceeeecc---------------cc--CC-cCCCC--CCCCEeeeCCC----CcEeeCCC
Q psy590           12 GTAKV-PRPCQSDLDCLDAEACYSGQCE---------------DL--CA-IASLC--APSAKCHVVKH----RPVCTCPQ   66 (257)
Q Consensus        12 ~~~c~-~~~C~~~~~C~~~~g~~~C~C~---------------~~--C~-~~~~C--~~~~~C~~~~g----~~~C~C~~   66 (257)
                      .|+|. .+||. +++|+|+.++|+|.|.               ++  |. ..++|  ..++.|++..+    +|.|.|++
T Consensus         3 ideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~   81 (162)
T 1uzk_A            3 VNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL   81 (162)
T ss_dssp             CCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTT
T ss_pred             cccCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCC
Confidence            35677 48897 6899999999999993               22  43 11223  23678888776    78899998


Q ss_pred             CCccCCCCCccC----------------------CCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCce
Q psy590           67 GYEGNPATKCYL----------------------PNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHAT  124 (257)
Q Consensus        67 G~~g~~~~~C~~----------------------~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~  124 (257)
                      ||.+..  .|+.                      .....|++++||...+              .+|.+ ++|+++.++|
T Consensus        82 G~~~~~--~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~--------------~~C~~-g~C~n~~gsy  144 (162)
T 1uzk_A           82 GKAWGT--PCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELP--------------GLCQG-GKCINTFGSF  144 (162)
T ss_dssp             CCEETT--TTEECCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCG--------------GGGBT-SEEEECSSCE
T ss_pred             CCCcCC--CcccCCCCCCCCceeECCCCCCcccCCCCCccCccccccCCC--------------CCcCC-CEeEcCCCCE
Confidence            887211  2210                      0112456777776432              56874 7999999999


Q ss_pred             eeeCCCCCccCC
Q psy590          125 DCSCLEGFQGNG  136 (257)
Q Consensus       125 ~C~C~~g~~g~~  136 (257)
                      .|.|++||.+..
T Consensus       145 ~C~C~~Gy~g~~  156 (162)
T 1uzk_A          145 QCRCPTGYYLNE  156 (162)
T ss_dssp             EEECCTTCCBCT
T ss_pred             EeeCCCCccCCC
Confidence            999999999874

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.97  E-value=1.6e-10  Score=84.21  Aligned_cols=64  Identities=34%  Similarity=0.811  Sum_probs=23.9

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC-CCCCCCCEeccC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQE-DSCGEHAICIPK  187 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~-~~C~~~~~C~~~  187 (257)
                      ..|.  +.|+++.++|.|.|++||.+.....|                           .+||+|.. ++|.  ++|+|+
T Consensus        37 ~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C---------------------------~dideC~~~~~C~--~~C~n~   85 (107)
T 2w2n_E           37 GGCS--YVCNDLKIGYECLCPDGFQLVAQRRC---------------------------EDIDECQDPDTCS--QLCVNL   85 (107)
T ss_dssp             GGCS--SEEECCSBSCEEECCTTCEEETTTEE---------------------------EC-------------------
T ss_pred             CCCC--CEeEeCCCCeEEECCCCccccCCCcc---------------------------ccccccCCCCCcC--CeeecC
Confidence            4564  58999999999999999998532323                           33888974 7786  699999


Q ss_pred             CCCeeeecCCCCccCC
Q psy590          188 NHGIDCQCQSGHQGNP  203 (257)
Q Consensus       188 ~g~~~C~C~~G~~g~~  203 (257)
                      .++|+|.|++||+++.
T Consensus        86 ~gsy~C~C~~Gy~~~~  101 (107)
T 2w2n_E           86 EGGYKCQCEEGFQLDP  101 (107)
T ss_dssp             ----------------
T ss_pred             CCCEEEECCCCceECC
Confidence            9999999999999865

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.94  E-value=8.3e-10  Score=84.89  Aligned_cols=71  Identities=24%  Similarity=0.621  Sum_probs=58.0

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCee
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVC  117 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C  117 (257)
                      +|+|. .++|.++++|++..++|.|.|++||+|.   .        |.++++|...+              .+|.+  .|
T Consensus        48 ideC~-~~pC~n~g~C~~~~~~y~C~C~~G~~G~---~--------C~~~deC~~~~--------------~~C~~--~C   99 (146)
T 1x7a_L           48 GDQCE-PNPCLNGGLCKDDINSYECWCQVGFEGK---N--------CELDATCNIKN--------------GRCKQ--FC   99 (146)
T ss_dssp             --CCS-SCSSCTTCEEEECSSCEEEECCSSEEST---T--------TCEECCTTSGG--------------GSCSS--BC
T ss_pred             cCcCC-CCCCCCCCEeECCCCCEEEecCCCCcCC---c--------CCCCccccCCC--------------CCCcC--CC
Confidence            57898 8899999999999999999999999987   3        55668887532              46764  89


Q ss_pred             -eeCCCceeeeCCCCCccCC
Q psy590          118 -INKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       118 -~~~~g~~~C~C~~g~~g~~  136 (257)
                       +++.++|.|.|++||.+..
T Consensus       100 ~~n~~g~y~C~C~~Gy~l~~  119 (146)
T 1x7a_L          100 KTGADSKVLCSCTTGYRLAP  119 (146)
T ss_dssp             CCCSSSCCCCBCCTTEEECT
T ss_pred             CCCCCCCEEeEcCCCcEeCC
Confidence             8999999999999998543

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.92  E-value=1.5e-09  Score=79.96  Aligned_cols=67  Identities=27%  Similarity=0.592  Sum_probs=51.3

Q ss_pred             CCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCcee
Q psy590           46 LCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATD  125 (257)
Q Consensus        46 ~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~  125 (257)
                      .|.++++|+++.++|.|.|++||+|.   .|+..     .++++|...+              ..|..  +|+++.++|.
T Consensus        21 ~C~~~g~C~~~~~~y~C~C~~G~~G~---~C~~~-----~~~~~C~~~~--------------~~C~~--~C~n~~g~y~   76 (114)
T 1aut_L           21 LCCGHGTCIDGIGSFSCDCRSGWEGR---FCQRE-----VSFLNCSLDN--------------GGCTH--YCLEEVGWRR   76 (114)
T ss_dssp             TTTTSEEECCCSSCCCEEECTTEEST---TSCEE-----CCSSSSSSGG--------------GGCSS--EEEECSSSEE
T ss_pred             cCCCcCCCCCCCCCcEeeCCCCCcCC---CcCcC-----CcCCcCcCCC--------------CCCCC--EeECCCCCEE
Confidence            38888999999999999999999998   45421     1134565422              45653  8999999999


Q ss_pred             eeCCCCCccCC
Q psy590          126 CSCLEGFQGNG  136 (257)
Q Consensus       126 C~C~~g~~g~~  136 (257)
                      |.|.+||.+..
T Consensus        77 C~C~~G~~~~~   87 (114)
T 1aut_L           77 CSCAPGYKLGD   87 (114)
T ss_dssp             EECCTTEEECT
T ss_pred             eECCCCeeECC
Confidence            99999999764

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.91  E-value=1.8e-10  Score=92.62  Aligned_cols=82  Identities=26%  Similarity=0.661  Sum_probs=29.0

Q ss_pred             CCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCcc
Q psy590           83 GCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLC  162 (257)
Q Consensus        83 ~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~  162 (257)
                      .|.++++|..                ++|.++++|++..++|.|.|.+||.|..   |..          .         
T Consensus        38 ~c~dideC~~----------------~pC~ngg~C~n~~g~y~C~C~~Gf~G~~---Ce~----------~---------   79 (195)
T 1nfu_B           38 KYKDGDQCET----------------SPCQNQGKCKDGLGEYTCTCLEGFEGKN---CEL----------F---------   79 (195)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCcccCC----------------CCCCCCCEeECCCCCeeEeCCCCceecc---ccc----------c---------
Confidence            4778888874                7899999999999999999999999872   222          1         


Q ss_pred             CCCCCccC-CCCCC--CCCCCCCEeccCCCCeeeecCCCCccCCC-CCcccCc
Q psy590          163 DRLNRICI-NPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGNPY-IACLSEL  211 (257)
Q Consensus       163 ~~~~~~~i-d~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~~-~~C~~~~  211 (257)
                             + |+|..  .+|.+  .|++..++|+|.|++||++... ..|.+++
T Consensus        80 -------i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B           80 -------TRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKACIPTG  123 (195)
T ss_dssp             --------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             -------ccccccCCCCCCCC--EeECCCCCeEEECCCCceeCCCCCccccCC
Confidence                   4 67865  35764  9999999999999999993221 2387664

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.90  E-value=6.6e-09  Score=89.79  Aligned_cols=78  Identities=27%  Similarity=0.772  Sum_probs=64.2

Q ss_pred             CCCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC---CCCCCCCEe
Q psy590          108 HSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQE---DSCGEHAIC  184 (257)
Q Consensus       108 ~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~---~~C~~~~~C  184 (257)
                      .++|.+++.|++..++|.|.|.+||.|.             .|+.                ++|+|..   ++|.+  .|
T Consensus        10 ~~pC~~~g~C~~~~~~~~C~C~~g~~g~-------------~C~~----------------~~~eC~~~~~~~C~~--~C   58 (317)
T 3h5c_B           10 SQPCLHNGSCQDSIWGYTCTCSPGYEGS-------------NCEL----------------AKNECHPERTDGCQH--FC   58 (317)
T ss_dssp             SCCCTTTCCCCCCSSSCCCCCSSSCCSS-------------SSCC----------------CSSSCCTTCTTSCSS--EE
T ss_pred             CCCCCCCCEeECCCCCeEEECCCCCcCC-------------cccc----------------CcccCCCCCCCCCcC--cc
Confidence            3789999999999999999999999987             3321                3889976   68986  99


Q ss_pred             ccCCCCeeeecCCCCccCCC-CCcccCccccCC
Q psy590          185 IPKNHGIDCQCQSGHQGNPY-IACLSELICLCH  216 (257)
Q Consensus       185 ~~~~g~~~C~C~~G~~g~~~-~~C~~~~~C~~~  216 (257)
                      ++..++|+|.|++||.+... ..|.++++|...
T Consensus        59 ~~~~g~~~C~C~~g~~~~~~~~~C~~~~~c~cg   91 (317)
T 3h5c_B           59 LPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG   91 (317)
T ss_dssp             ECCSSSCEEECCTTEECCTTSSCCEECSSCCCC
T ss_pred             ccCCCeeEEeccccccccccccccccccccccc
Confidence            99999999999999998543 369988887544

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.90  E-value=2.1e-10  Score=86.98  Aligned_cols=82  Identities=26%  Similarity=0.661  Sum_probs=28.8

Q ss_pred             CCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCcc
Q psy590           83 GCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLC  162 (257)
Q Consensus        83 ~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~  162 (257)
                      .|.++++|..                ++|.++++|++..++|.|.|++||.|..   |..          .         
T Consensus        38 ~c~d~d~C~~----------------~pC~n~g~C~~~~~~y~C~C~~G~~G~~---C~~----------~---------   79 (134)
T 2vh0_B           38 KYKDGDQCET----------------SPCQNQGKCKDGLGEYTCTCLEGFEGKN---CEL----------F---------   79 (134)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCcCcCCC----------------CCCCCcCCcccCCCCEEeeCCCCccCCc---ccc----------C---------
Confidence            4677888874                7899889999999999999999999772   222          1         


Q ss_pred             CCCCCccC-CCCCC--CCCCCCCEeccCCCCeeeecCCCCccCCC-CCcccCc
Q psy590          163 DRLNRICI-NPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGNPY-IACLSEL  211 (257)
Q Consensus       163 ~~~~~~~i-d~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~~-~~C~~~~  211 (257)
                             + |+|..  .+|.+  +|+++.++|+|.|++||++... ..|.+++
T Consensus        80 -------i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~~  123 (134)
T 2vh0_B           80 -------TRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKACIPTG  123 (134)
T ss_dssp             --------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             -------CCCccccCCCCCCC--EeECCCCCEEEECCCCcEECCCCCccCcCC
Confidence                   4 67765  35664  9999999999999999994321 2387664

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.89  E-value=6.5e-10  Score=77.82  Aligned_cols=70  Identities=33%  Similarity=0.801  Sum_probs=53.9

Q ss_pred             cccCCc-CCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCe
Q psy590           38 EDLCAI-ASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAV  116 (257)
Q Consensus        38 ~~~C~~-~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~  116 (257)
                      +|+|.. +.+| ++++|+++.++|.|.|++||++..       +...|++++||..                ++|.  ++
T Consensus         3 ideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~-------~g~~C~dideC~~----------------~~C~--~~   56 (87)
T 1z6c_A            3 VDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNL-------KSKSCEDIDECSE----------------NMCA--QL   56 (87)
T ss_dssp             SCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEET-------TTTEEECCCHHHH----------------SCCS--SE
T ss_pred             cccccCCCCCC-CCCEeECCCCCEEEECCCCceECC-------CCCcCCCcCeeCC----------------CCCC--CE
Confidence            367872 2348 678999999999999999999653       1235778899863                6786  69


Q ss_pred             eeeCCCceeeeCC--CCCc
Q psy590          117 CINKNHATDCSCL--EGFQ  133 (257)
Q Consensus       117 C~~~~g~~~C~C~--~g~~  133 (257)
                      |+++.++|.|.|+  .||.
T Consensus        57 C~n~~g~y~C~C~g~~G~~   75 (87)
T 1z6c_A           57 CVNYPGGYTCYCDGKKGFK   75 (87)
T ss_dssp             ECCCSSSCCEECCSSSCCB
T ss_pred             EEccCCCEEEECCCCcCCc
Confidence            9999999999995  4444

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.88  E-value=4.6e-09  Score=94.30  Aligned_cols=114  Identities=27%  Similarity=0.721  Sum_probs=81.2

Q ss_pred             CCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCcee
Q psy590           46 LCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATD  125 (257)
Q Consensus        46 ~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~  125 (257)
                      +|.+++.|.+  +.+.|.|++||+|.   .|+..    |      ..  ...|..|.++|.....|.+++.|.  .+.|.
T Consensus       204 ~C~~~G~C~~--~~g~C~C~~G~~G~---~Ce~~----C------~~--g~~g~~C~~~C~~~~~C~~~g~C~--~~~~~  264 (423)
T 2gy5_A          204 ACMNNGVCHE--DTGECICPPGFMGR---TCEKA----C------EL--HTFGRTCKERCSGQEGCKSYVFCL--PDPYG  264 (423)
T ss_dssp             CCCTTCEECT--TTCCEECCTTEEST---TSCEE----C------CT--TEESTTSCEECCSTTTTTTCCEEE--TTTTE
T ss_pred             CCCCCCEEEC--CCCcEeCCCCccCC---Ccccc----c------CC--CCCCCCcCccCCCCCCCCCCCEEC--CCCCe
Confidence            7989999976  45789999999998   66521    1      11  012334444554446788888895  56789


Q ss_pred             eeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          126 CSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       126 C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |.|.+||.|.             .|..  .|.+||.+....    ..|   +|.++++|.+..+   |.|++||+|..
T Consensus       265 C~C~~G~~G~-------------~C~~--~C~~G~~G~~C~----~~C---~C~ngg~C~~~~~---C~C~~G~~G~~  317 (423)
T 2gy5_A          265 CSCATGWKGL-------------QCNE--ACHPGFYGPDCK----LRC---SCNNGEMCDRFQG---CLCSPGWQGLQ  317 (423)
T ss_dssp             EECCBTCBSG-------------GGCB--CCCTTBCSBTTC----CBC---CCTTCCEEETTTE---EECCTTCBSTT
T ss_pred             EEeCCCcccc-------------cccC--ccCCCCcCCccc----ccc---cCCCCCEecCCCc---eECCCCCcCCC
Confidence            9999999988             3432  478888875421    133   5888899987753   99999999987

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.78  E-value=3.6e-09  Score=100.02  Aligned_cols=147  Identities=22%  Similarity=0.447  Sum_probs=98.1

Q ss_pred             cCCcCCCCCCCCEeeeCCCCcE---eeCCCCCccCCCCCccCCCCC-CCCcCCCCCCCCcccCCCccCCCCCCCCCCCCC
Q psy590           40 LCAIASLCAPSAKCHVVKHRPV---CTCPQGYEGNPATKCYLPNPL-GCVSNEECASTEACINSQCQKPCAVHSPCAPNA  115 (257)
Q Consensus        40 ~C~~~~~C~~~~~C~~~~g~~~---C~C~~G~~g~~~~~C~~~~~~-~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~  115 (257)
                      +|. ..+|.+++.|.+..|.|.   |.|.+||.|.   .|+..... .-...++|...+            ...+|.+++
T Consensus       436 ~C~-~~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~---~Ce~~~~~~~~~~~~~C~~~~------------~~~~Cs~~G  499 (690)
T 3fcs_B          436 ACQ-AQAEPNSHRCNNGNGTFECGVCRCGPGWLGS---QCECSEEDYRPSQQDECSPRE------------GQPVCSQRG  499 (690)
T ss_dssp             GGG-TTCCTTCTTTTTTSEEEETTEEEECTTCCSS---SSCCSCC------CCCCSSSS------------SSCGGGGSE
T ss_pred             CCc-CCCCCCCCcccCCCCeEeCCceEeCCCccCC---ceeeccCccCCccCCcCCCCC------------CCCCCCCCC
Confidence            565 678888888987777777   9999999998   67521100 000113444311            014588889


Q ss_pred             eeeeCCCceeeeCC----CCCccCCC----CCcccCC--C--CCCCCC-CCCCCCCCCccCCCCC-ccCCCCCC---CCC
Q psy590          116 VCINKNHATDCSCL----EGFQGNGF----VGCLPVR--N--YQPICQ-YNEDCPPDKLCDRLNR-ICINPCQE---DSC  178 (257)
Q Consensus       116 ~C~~~~g~~~C~C~----~g~~g~~~----~~C~~~~--~--~~~~C~-~~~~C~~g~~~~~~~~-~~id~C~~---~~C  178 (257)
                      .|++    +.|.|.    +||.|..-    ..|....  .  ..+.|. +.+.|.+||.|....| .++++|..   .+|
T Consensus       500 ~C~~----g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C  575 (690)
T 3fcs_B          500 ECLC----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLC  575 (690)
T ss_dssp             EECS----SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEETTEEEECTTEESSSSCEECCCTTTBCTTSSBT
T ss_pred             EEEC----CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecCCeeECcCCCcCCCCccCCCCCcccCCCCCCC
Confidence            9973    589999    99998862    1233210  0  122332 3466899999987665 36889987   579


Q ss_pred             CCCCEeccCCCCeeeec-CCCCccCCCCCcccCccc
Q psy590          179 GEHAICIPKNHGIDCQC-QSGHQGNPYIACLSELIC  213 (257)
Q Consensus       179 ~~~~~C~~~~g~~~C~C-~~G~~g~~~~~C~~~~~C  213 (257)
                      .++++|++    .+|.| ++||+|..   |+.-..|
T Consensus       576 ~~~G~C~~----g~C~C~~~Gy~G~~---Ce~C~~C  604 (690)
T 3fcs_B          576 SGRGKCEC----GSCVCIQPGSYGDT---CEKCPTC  604 (690)
T ss_dssp             SSSCEEET----TEEECCSTTCBSTT---SCBCTTS
T ss_pred             CCCCEEeC----CEEECCCCCccCCC---cCcCCCC
Confidence            99999976    29999 99999997   9864456

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.76  E-value=1e-08  Score=78.43  Aligned_cols=74  Identities=23%  Similarity=0.564  Sum_probs=54.6

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCee
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVC  117 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C  117 (257)
                      +|+|. .++|.++++|+++.++|.|.|++||+|.   .|+.       ++++|..-.          +. ...|..  +|
T Consensus        47 id~C~-~~pC~n~g~C~~~~g~y~C~C~~G~~G~---~C~~-------~~~~c~~c~----------~~-~~~C~~--~C  102 (142)
T 2c4f_L           47 GDQCA-SSPCQNGGSCKDQLQSYICFCLPAFEGR---NCET-------HKDDQLICV----------NE-NGGCEQ--YC  102 (142)
T ss_dssp             CCGGG-GCCCCTTCEEEEETTEEEEECCTTEEST---TSCE-------EGGGCCSTT----------TG-GGGCSS--EE
T ss_pred             cCcCc-CCCcCCCCEEeCCCCCEEeeCCCCccCC---cccc-------Ccccccccc----------CC-CCCccC--Ee
Confidence            47888 7899999999999999999999999987   4431       234432100          00 133432  89


Q ss_pred             eeCCC-ceeeeCCCCCccC
Q psy590          118 INKNH-ATDCSCLEGFQGN  135 (257)
Q Consensus       118 ~~~~g-~~~C~C~~g~~g~  135 (257)
                      +++.+ +|.|.|.+||.+.
T Consensus       103 ~~~~g~~y~C~C~~Gy~l~  121 (142)
T 2c4f_L          103 SDHTGTKRSCRCHEGYSLL  121 (142)
T ss_dssp             ECCTTSCCEEECCTTEEEC
T ss_pred             ECCCCCCEEEECCCCceEC
Confidence            99999 9999999999854

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.73  E-value=4.5e-09  Score=79.58  Aligned_cols=70  Identities=29%  Similarity=0.706  Sum_probs=25.3

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCc-C-CCCCCCCcccCCCccCCCCCCCCCCCCC
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVS-N-EECASTEACINSQCQKPCAVHSPCAPNA  115 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~-~-~eC~~~~~c~g~~c~~~C~~~~~C~~~~  115 (257)
                      +|+|. .++|.++++|+++.++|.|.|++||+|.   .|        .+ + ++|...+              .+|.+  
T Consensus        42 ~d~C~-~~pC~n~g~C~~~~~~y~C~C~~G~~G~---~C--------~~~i~d~C~~~~--------------~~C~~--   93 (134)
T 2vh0_B           42 GDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGK---NC--------ELFTRKLCSLDN--------------GDCDQ--   93 (134)
T ss_dssp             ---------------------------------------------------CCGGGTGG--------------GGCSS--
T ss_pred             cCcCC-CCCCCCcCCcccCCCCEEeeCCCCccCC---cc--------ccCCCCccccCC--------------CCCCC--
Confidence            57888 7899999999999999999999999987   44        44 4 6776532              46764  


Q ss_pred             eeeeCCCceeeeCCCCCccC
Q psy590          116 VCINKNHATDCSCLEGFQGN  135 (257)
Q Consensus       116 ~C~~~~g~~~C~C~~g~~g~  135 (257)
                      .|++..++|.|.|.+||.+.
T Consensus        94 ~C~~~~g~y~C~C~~Gy~l~  113 (134)
T 2vh0_B           94 FCHEEQNSVVCSCARGYTLA  113 (134)
T ss_dssp             EEEEETTEEEEECCTTEEEC
T ss_pred             EeECCCCCEEEECCCCcEEC
Confidence            99999999999999999854

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.69  E-value=3.9e-09  Score=76.72  Aligned_cols=72  Identities=28%  Similarity=0.654  Sum_probs=29.2

Q ss_pred             cccCCc-CCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCe
Q psy590           38 EDLCAI-ASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAV  116 (257)
Q Consensus        38 ~~~C~~-~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~  116 (257)
                      +++|.. ...|.  +.|+++.++|.|.|++||+|..        ...|++++||..               ..+|.  +.
T Consensus        29 ~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~--------g~~C~dideC~~---------------~~~C~--~~   81 (107)
T 2w2n_E           29 TNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVA--------QRRCEDIDECQD---------------PDTCS--QL   81 (107)
T ss_dssp             CCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEET--------TTEEEC------------------------------
T ss_pred             CccCcCCCCCCC--CEeEeCCCCeEEECCCCccccC--------CCccccccccCC---------------CCCcC--Ce
Confidence            467762 34565  5899999999999999999842        235778899874               25785  69


Q ss_pred             eeeCCCceeeeCCCCCccCC
Q psy590          117 CINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       117 C~~~~g~~~C~C~~g~~g~~  136 (257)
                      |+++.++|.|.|.+||.+..
T Consensus        82 C~n~~gsy~C~C~~Gy~~~~  101 (107)
T 2w2n_E           82 CVNLEGGYKCQCEEGFQLDP  101 (107)
T ss_dssp             --------------------
T ss_pred             eecCCCCEEEECCCCceECC
Confidence            99999999999999998764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.68  E-value=2.7e-08  Score=96.04  Aligned_cols=70  Identities=33%  Similarity=0.692  Sum_probs=53.7

Q ss_pred             CeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC-CCCCCCCEeccCCCCeee
Q psy590          115 AVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQE-DSCGEHAICIPKNHGIDC  193 (257)
Q Consensus       115 ~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~-~~C~~~~~C~~~~g~~~C  193 (257)
                      ..|++++++|.|.|.+||.+.....|                           .++|+|.. .+|.  +.|+|+.|+|+|
T Consensus       324 ~~C~~~~~~y~C~C~~Gy~l~~g~~C---------------------------~dideC~~~~~C~--~~C~n~~gsy~C  374 (791)
T 3m0c_C          324 HVCNDLKIGYECLCPDGFQLVAQRRC---------------------------EDIDECQDPDTCS--QLCVNLEGGYKC  374 (791)
T ss_dssp             SEEEECSBSEEEECCTTCEEETTTEE---------------------------ECCCCCSSSSSCT--TTCCBCSSCBCC
T ss_pred             ccccCCCCCcccCCCCCCccCCCCcc---------------------------ccCcccCCCCCCC--CeeecCCCCcee
Confidence            38999999999999999986432223                           34888863 4564  589999999999


Q ss_pred             ecCCCCccCCC-CCcccCccc
Q psy590          194 QCQSGHQGNPY-IACLSELIC  213 (257)
Q Consensus       194 ~C~~G~~g~~~-~~C~~~~~C  213 (257)
                      .|++||+++.. .+|.+++++
T Consensus       375 ~C~~Gy~l~~~~~~C~~~~~~  395 (791)
T 3m0c_C          375 QCEEGFQLDPHTKACKAVGSI  395 (791)
T ss_dssp             CCCSSEECCSSCCCCEETTSC
T ss_pred             ecCCCCEeCCCCceeeecccc
Confidence            99999997543 358877654

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.66  E-value=3.6e-08  Score=85.10  Aligned_cols=80  Identities=26%  Similarity=0.718  Sum_probs=62.7

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeee
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCI  118 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~  118 (257)
                      |+|. .++|.+++.|++..++|.|.|++||.|.   .|+       .+++||....             ..+|.+  .|+
T Consensus         6 ~~C~-~~pC~~~g~C~~~~~~~~C~C~~g~~g~---~C~-------~~~~eC~~~~-------------~~~C~~--~C~   59 (317)
T 3h5c_B            6 SPCI-SQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCE-------LAKNECHPER-------------TDGCQH--FCL   59 (317)
T ss_dssp             CCTT-SCCCTTTCCCCCCSSSCCCCCSSSCCSS---SSC-------CCSSSCCTTC-------------TTSCSS--EEE
T ss_pred             CcCC-CCCCCCCCEeECCCCCeEEECCCCCcCC---ccc-------cCcccCCCCC-------------CCCCcC--ccc
Confidence            6777 6788888899888889999999999987   443       3788887521             267875  999


Q ss_pred             eCCCceeeeCCCCCccCC-CCCcccCC
Q psy590          119 NKNHATDCSCLEGFQGNG-FVGCLPVR  144 (257)
Q Consensus       119 ~~~g~~~C~C~~g~~g~~-~~~C~~~~  144 (257)
                      +..++|.|.|.+||.+.. ...|.+++
T Consensus        60 ~~~g~~~C~C~~g~~~~~~~~~C~~~~   86 (317)
T 3h5c_B           60 PGQESYTCSCAQGYRLGEDHKQCVPHD   86 (317)
T ss_dssp             CCSSSCEEECCTTEECCTTSSCCEECS
T ss_pred             cCCCeeEEecccccccccccccccccc
Confidence            999999999999999764 34465543

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.66  E-value=4.8e-09  Score=84.22  Aligned_cols=71  Identities=28%  Similarity=0.697  Sum_probs=25.7

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcC-CCCCCCCcccCCCccCCCCCCCCCCCCCe
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSN-EECASTEACINSQCQKPCAVHSPCAPNAV  116 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~-~eC~~~~~c~g~~c~~~C~~~~~C~~~~~  116 (257)
                      +|+|. .++|.++++|++..++|.|.|++||+|.   .|+       .++ ++|...+              .+|.+  .
T Consensus        42 ideC~-~~pC~ngg~C~n~~g~y~C~C~~Gf~G~---~Ce-------~~i~deC~~~~--------------~~C~~--~   94 (195)
T 1nfu_B           42 GDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGK---NCE-------LFTRKLCSLDN--------------GDCDQ--F   94 (195)
T ss_dssp             --------------------------------------------------CCGGGTGG--------------GGCSS--E
T ss_pred             CcccC-CCCCCCCCEeECCCCCeeEeCCCCceec---ccc-------ccccccccCCC--------------CCCCC--E
Confidence            57898 7899999999999999999999999987   443       124 6787532              56764  9


Q ss_pred             eeeCCCceeeeCCCCCccC
Q psy590          117 CINKNHATDCSCLEGFQGN  135 (257)
Q Consensus       117 C~~~~g~~~C~C~~g~~g~  135 (257)
                      |++..++|.|.|.+||.+.
T Consensus        95 C~n~~gsy~C~C~~Gy~l~  113 (195)
T 1nfu_B           95 CHEEQNSVVCSCARGYTLA  113 (195)
T ss_dssp             EEEETTEEEEECCTTEEEC
T ss_pred             eECCCCCeEEECCCCceeC
Confidence            9999999999999999844

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.61  E-value=3.8e-08  Score=69.28  Aligned_cols=54  Identities=24%  Similarity=0.588  Sum_probs=44.9

Q ss_pred             eeeCCCCcEeeCCCCCccCCCCCccCCCCCCCC--cCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCC--CceeeeC
Q psy590           53 CHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCV--SNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN--HATDCSC  128 (257)
Q Consensus        53 C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~--~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~--g~~~C~C  128 (257)
                      |++..++|.|.|++||+     .        |.  ++++|..                ++|.++++|++..  ++|.|.|
T Consensus        25 C~n~~~~y~C~C~~G~~-----~--------C~~~~~~~C~~----------------~pC~ngg~C~~~~~~~~~~C~C   75 (91)
T 1tpg_A           25 VLRSNRVEYCWCNSGRA-----Q--------CHSVPVKSCSE----------------PRCFNGGTCQQALYFSDFVCQC   75 (91)
T ss_dssp             CSSSSCEEEEECSSSCC-----B--------CCEECEEECSS----------------CCSCTTCEEEEESSSSCEEEEC
T ss_pred             cccCCCCcEeECCCCCc-----c--------cccCcCCcccC----------------CCCCCCCEeecCCCCCCeEeEC
Confidence            55667889999999996     2        43  5677874                7899999999887  8999999


Q ss_pred             CCCCccC
Q psy590          129 LEGFQGN  135 (257)
Q Consensus       129 ~~g~~g~  135 (257)
                      ++||.|.
T Consensus        76 ~~G~~G~   82 (91)
T 1tpg_A           76 PEGFAGK   82 (91)
T ss_dssp             CTTCBSS
T ss_pred             CCCCcCC
Confidence            9999987

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.55  E-value=8.2e-08  Score=85.58  Aligned_cols=73  Identities=32%  Similarity=0.664  Sum_probs=55.4

Q ss_pred             CCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC-CCCCCCCEeccCC
Q psy590          110 PCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQE-DSCGEHAICIPKN  188 (257)
Q Consensus       110 ~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~-~~C~~~~~C~~~~  188 (257)
                      ++...+.|++++++|.|.|++||.+.....|                           .++|||.. ++|.+  .|+|+.
T Consensus         7 ~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C---------------------------~dideC~~~~~C~~--~C~n~~   57 (400)
T 3p5b_L            7 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRC---------------------------EDIDECQDPDTCSQ--LCVNLE   57 (400)
T ss_dssp             GGGCSSEEEECSSSEEEECCTTEEECSSSCE---------------------------EECCCCSTTSSCSS--CCBCCS
T ss_pred             CCCCCCEeECCCCCeEEECCCCCCcCCCCcc---------------------------cCchhhhccCCCCC--ccCCCc
Confidence            3333469999999999999999987432323                           44888874 67864  899999


Q ss_pred             CCeeeecCCCCccCCC-CCcccCc
Q psy590          189 HGIDCQCQSGHQGNPY-IACLSEL  211 (257)
Q Consensus       189 g~~~C~C~~G~~g~~~-~~C~~~~  211 (257)
                      |+|.|.|++||+++.. .+|..++
T Consensus        58 g~~~C~C~~g~~~~~~~~~C~~~~   81 (400)
T 3p5b_L           58 GGYKCQCEEGFQLDPHTKACKAVG   81 (400)
T ss_dssp             SSCBCCCCTTCCCCTTTSSCCCST
T ss_pred             cceeeeccccccccccccceeecc
Confidence            9999999999997643 3576543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.53  E-value=8.9e-08  Score=85.35  Aligned_cols=79  Identities=28%  Similarity=0.604  Sum_probs=60.4

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeee
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCI  118 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~  118 (257)
                      |+|. ..++...+.|+++.++|.|.|++||++..        ...|.+++||..               ..+|..  .|+
T Consensus         1 ~eC~-~~~~~c~~~C~~~~~~y~C~C~~G~~~~~--------~~~C~dideC~~---------------~~~C~~--~C~   54 (400)
T 3p5b_L            1 NECL-DNNGGCSHVCNDLKIGYECLCPDGFQLVA--------QRRCEDIDECQD---------------PDTCSQ--LCV   54 (400)
T ss_dssp             CCTT-TTGGGCSSEEEECSSSEEEECCTTEEECS--------SSCEEECCCCST---------------TSSCSS--CCB
T ss_pred             Cccc-CCCCCCCCEeECCCCCeEEECCCCCCcCC--------CCcccCchhhhc---------------cCCCCC--ccC
Confidence            5777 44444456999999999999999999742        345888999974               267864  899


Q ss_pred             eCCCceeeeCCCCCccCC-CCCcccC
Q psy590          119 NKNHATDCSCLEGFQGNG-FVGCLPV  143 (257)
Q Consensus       119 ~~~g~~~C~C~~g~~g~~-~~~C~~~  143 (257)
                      ++.++|.|.|.+||.+.. ...|.++
T Consensus        55 n~~g~~~C~C~~g~~~~~~~~~C~~~   80 (400)
T 3p5b_L           55 NLEGGYKCQCEEGFQLDPHTKACKAV   80 (400)
T ss_dssp             CCSSSCBCCCCTTCCCCTTTSSCCCS
T ss_pred             CCccceeeeccccccccccccceeec
Confidence            999999999999998764 2345543

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.52  E-value=7.7e-08  Score=56.50  Aligned_cols=35  Identities=20%  Similarity=0.549  Sum_probs=32.6

Q ss_pred             cCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      ++|+|..++|.++++|++..++|+|.|++||+|..
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~   36 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKN   36 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTT
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCc
Confidence            48999999999999999999999999999999876

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.45  E-value=1.4e-06  Score=83.14  Aligned_cols=72  Identities=33%  Similarity=0.724  Sum_probs=54.3

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCC-CCCCCCCCEeccC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQ-EDSCGEHAICIPK  187 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~-~~~C~~~~~C~~~  187 (257)
                      ..|.  +.|++++++|.|.|.+||.+.....|                           .++|+|. .++|.  +.|+|+
T Consensus       302 ~~C~--~~C~~~~~~~~C~C~~G~~~~~~~~C---------------------------~dideC~~~~~C~--~~C~n~  350 (699)
T 1n7d_A          302 GGCS--HVCNDLKIGYECLCPDGFQLVAQRRC---------------------------EDIDECQDPDTCS--QLCVNL  350 (699)
T ss_dssp             TTSC--TTCCCCTTCCCCCCCSSSCCCSSSCC---------------------------CCCCCCSSSSSCT--TTCCBC
T ss_pred             cCcC--CCcccCCCCcEEeCCCCeEcCCCCcc---------------------------cCccccCCCCccc--cccccC
Confidence            3464  47999999999999999987433323                           3388887 36785  589999


Q ss_pred             CCCeeeecCCCCccCCC-CCcccCc
Q psy590          188 NHGIDCQCQSGHQGNPY-IACLSEL  211 (257)
Q Consensus       188 ~g~~~C~C~~G~~g~~~-~~C~~~~  211 (257)
                      .++|+|.|++||++... .+|.++.
T Consensus       351 ~g~y~C~C~~G~~~~~~~~~C~~~~  375 (699)
T 1n7d_A          351 EGGYKCQCEEGFQLDPHTKACKAVG  375 (699)
T ss_dssp             SSCBCCCCCSSCBCCSSCCCCBCCS
T ss_pred             CCCeeeeeecccccCCCCCcccccc
Confidence            99999999999997543 3576553

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.42  E-value=1.9e-07  Score=88.19  Aligned_cols=60  Identities=23%  Similarity=0.671  Sum_probs=42.2

Q ss_pred             CCCCCCEeeeCCCCcEeeCC------CCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCC--CCee
Q psy590           46 LCAPSAKCHVVKHRPVCTCP------QGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAP--NAVC  117 (257)
Q Consensus        46 ~C~~~~~C~~~~g~~~C~C~------~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~--~~~C  117 (257)
                      +|.+++.|+.    ..|.|.      +||.|.   .|+       .+...|....             ..+|.+  ++.|
T Consensus       483 ~Cs~~G~C~~----G~C~C~~~~~~~~G~~G~---~Ce-------~~~~~C~~~~-------------~~~C~~~~~G~C  535 (687)
T 3k6s_B          483 ICSGLGDCVC----GQCLCHTSDVPGKLIYGQ---YCE-------CDTINCERYN-------------GQVCGGPGRGLC  535 (687)
T ss_dssp             GGGSSEEEET----TEEEECCCCSTTCCEEST---TSC-------EESSCSCEET-------------TEETSHHHHEEE
T ss_pred             cCCCCCEEeC----CEEEcCCCCCCCCCcccc---ccc-------cccccccCCC-------------CcCcCCCCCCeE
Confidence            4888889973    279999      999988   554       1334454211             246877  7889


Q ss_pred             eeCCCceeeeCCCCCccCC
Q psy590          118 INKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       118 ~~~~g~~~C~C~~g~~g~~  136 (257)
                      +.    ..|.|.+||.|..
T Consensus       536 ~~----g~C~C~~G~~G~~  550 (687)
T 3k6s_B          536 FC----GKCRCHPGFEGSA  550 (687)
T ss_dssp             ET----TEEEECTTCCSTT
T ss_pred             EC----CEEEcCCCCcCCC
Confidence            74    2799999999985

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.38  E-value=1.9e-07  Score=73.40  Aligned_cols=38  Identities=34%  Similarity=0.885  Sum_probs=30.0

Q ss_pred             CCCcc---CCCCCCCCCCCCCeeeeC-CCceeeeCCCCCccC
Q psy590           98 NSQCQ---KPCAVHSPCAPNAVCINK-NHATDCSCLEGFQGN  135 (257)
Q Consensus        98 g~~c~---~~C~~~~~C~~~~~C~~~-~g~~~C~C~~g~~g~  135 (257)
                      |..|+   ++|....+|.++++|+++ .++|.|.|.+||+|.
T Consensus       124 G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~  165 (169)
T 2vj2_A          124 GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP  165 (169)
T ss_dssp             TTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCST
T ss_pred             CCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCc
Confidence            55554   345433789999999996 789999999999987

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.37  E-value=4.5e-08  Score=63.30  Aligned_cols=43  Identities=23%  Similarity=0.663  Sum_probs=37.7

Q ss_pred             cCCCCCCCCCCCC--CEeccCCCCeeeecCCCCc-cCCCCCcccCcccc
Q psy590          169 CINPCQEDSCGEH--AICIPKNHGIDCQCQSGHQ-GNPYIACLSELICL  214 (257)
Q Consensus       169 ~id~C~~~~C~~~--~~C~~~~g~~~C~C~~G~~-g~~~~~C~~~~~C~  214 (257)
                      ++|+|.++||.++  ++|++..++|+|.|++||+ |..   |++.++|.
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~---C~~~~~C~   55 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLD---GTGNVTCI   55 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEEC---SSSCEEEE
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCC---CCCCCEec
Confidence            4789999999998  7999999999999999999 876   77666664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=1.2e-07  Score=84.13  Aligned_cols=73  Identities=23%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCC-CCCCCCCCEeccC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQ-EDSCGEHAICIPK  187 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~-~~~C~~~~~C~~~  187 (257)
                      ..|.  ..|.+..++|.|.|.+||.+...                          +..|.++|+|. .++|.+  .|+|+
T Consensus        11 ~~c~--~~C~~~~g~~~C~C~~G~~l~~~--------------------------~~~C~d~~eC~~~~~C~~--~C~~~   60 (386)
T 3v65_B           11 GGCA--QKCQMIRGAVQCTCHTGYRLTED--------------------------GRTCQDVNECAEEGYCSQ--GCTNS   60 (386)
T ss_dssp             ---------------------------------------------------------------------CCTT--EEC--
T ss_pred             CCCC--CCCcCCCCCcEeECCCCceECCC--------------------------CCccCccceeCCcCcccC--cCCCC
Confidence            4465  38988889999999999985431                          11234488996 468875  59999


Q ss_pred             CCCeeeecCCCCccCC-CCCcccCc
Q psy590          188 NHGIDCQCQSGHQGNP-YIACLSEL  211 (257)
Q Consensus       188 ~g~~~C~C~~G~~g~~-~~~C~~~~  211 (257)
                      .++|+|.|++||+... ..+|..++
T Consensus        61 ~g~~~C~C~~g~~l~~d~~~C~~~~   85 (386)
T 3v65_B           61 EGAFQCWCEAGYELRPDRRSCKALG   85 (386)
T ss_dssp             ---CCEECCTTEEECTTSSCEEECS
T ss_pred             CCCCeEEECCCceEcCCCCeECCcc
Confidence            9999999999998543 23486544

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.32  E-value=3.9e-07  Score=57.55  Aligned_cols=37  Identities=16%  Similarity=0.442  Sum_probs=31.9

Q ss_pred             cCCCCCCCCCCCCCEe-----ccCCCCeeeecCCCCccCCCCCcc
Q psy590          169 CINPCQEDSCGEHAIC-----IPKNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       169 ~id~C~~~~C~~~~~C-----~~~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      ++|+|.++||.++|+|     ++..++|+|.|++||+|..   |+
T Consensus         7 ~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~---CE   48 (55)
T 3u7u_G            7 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDR---CQ   48 (55)
T ss_dssp             ECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTT---SC
T ss_pred             cCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCC---cC
Confidence            4899999999999999     4667899999999999998   75

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.18  E-value=1.8e-06  Score=54.13  Aligned_cols=37  Identities=22%  Similarity=0.637  Sum_probs=32.8

Q ss_pred             cCCCCCCC---CCCCCCEec--cCCCCeeeecCCCCccCCCCCcc
Q psy590          169 CINPCQED---SCGEHAICI--PKNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       169 ~id~C~~~---~C~~~~~C~--~~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      ++|+|.++   +|.++++|+  +..++|+|.|++||+|..   |+
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~---Ce   43 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDR---CQ   43 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSS---SC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCc---CC
Confidence            38899876   999999999  888999999999999986   75

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.15  E-value=4.8e-07  Score=80.14  Aligned_cols=79  Identities=28%  Similarity=0.625  Sum_probs=19.9

Q ss_pred             ccCC-cCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCee
Q psy590           39 DLCA-IASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVC  117 (257)
Q Consensus        39 ~~C~-~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C  117 (257)
                      |+|. .+..|.  ..|.+..|+|.|.|++||++.+       +...|.+++||..               ..+|.+  .|
T Consensus         4 ~~C~~~~~~c~--~~C~~~~g~~~C~C~~G~~l~~-------~~~~C~d~~eC~~---------------~~~C~~--~C   57 (386)
T 3v65_B            4 ENCNVNNGGCA--QKCQMIRGAVQCTCHTGYRLTE-------DGRTCQDVNECAE---------------EGYCSQ--GC   57 (386)
T ss_dssp             ------------------------------------------------------------------------CCTT--EE
T ss_pred             CcccCCCCCCC--CCCcCCCCCcEeECCCCceECC-------CCCccCccceeCC---------------cCcccC--cC
Confidence            6776 233455  3798888999999999998542       2346888999973               267875  59


Q ss_pred             eeCCCceeeeCCCCCccCC-CCCcccC
Q psy590          118 INKNHATDCSCLEGFQGNG-FVGCLPV  143 (257)
Q Consensus       118 ~~~~g~~~C~C~~g~~g~~-~~~C~~~  143 (257)
                      +++.++|.|.|.+||.... ...|.++
T Consensus        58 ~~~~g~~~C~C~~g~~l~~d~~~C~~~   84 (386)
T 3v65_B           58 TNSEGAFQCWCEAGYELRPDRRSCKAL   84 (386)
T ss_dssp             C-----CCEECCTTEEECTTSSCEEEC
T ss_pred             CCCCCCCeEEECCCceEcCCCCeECCc
Confidence            9999999999999998543 3346554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.08  E-value=4.7e-06  Score=80.40  Aligned_cols=68  Identities=29%  Similarity=0.677  Sum_probs=53.5

Q ss_pred             EeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCC
Q psy590           52 KCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEG  131 (257)
Q Consensus        52 ~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g  131 (257)
                      .|+++.++|.|.|++||.+..        ...|.+++||..               ..+|.  ..|+++.++|.|.|.+|
T Consensus       325 ~C~~~~~~y~C~C~~Gy~l~~--------g~~C~dideC~~---------------~~~C~--~~C~n~~gsy~C~C~~G  379 (791)
T 3m0c_C          325 VCNDLKIGYECLCPDGFQLVA--------QRRCEDIDECQD---------------PDTCS--QLCVNLEGGYKCQCEEG  379 (791)
T ss_dssp             EEEECSBSEEEECCTTCEEET--------TTEEECCCCCSS---------------SSSCT--TTCCBCSSCBCCCCCSS
T ss_pred             cccCCCCCcccCCCCCCccCC--------CCccccCcccCC---------------CCCCC--CeeecCCCCceeecCCC
Confidence            899999999999999998631        345888999974               25675  48999999999999999


Q ss_pred             CccCC-CCCcccCC
Q psy590          132 FQGNG-FVGCLPVR  144 (257)
Q Consensus       132 ~~g~~-~~~C~~~~  144 (257)
                      |.+.. ...|.+++
T Consensus       380 y~l~~~~~~C~~~~  393 (791)
T 3m0c_C          380 FQLDPHTKACKAVG  393 (791)
T ss_dssp             EECCSSCCCCEETT
T ss_pred             CEeCCCCceeeecc
Confidence            98754 33465543

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.03  E-value=4.8e-06  Score=50.31  Aligned_cols=34  Identities=18%  Similarity=0.479  Sum_probs=28.9

Q ss_pred             CCCCC---CCCCCCEec--cCCCCeeeecCCCCccCCCCCcc
Q psy590          172 PCQED---SCGEHAICI--PKNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       172 ~C~~~---~C~~~~~C~--~~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      +|.++   +|.++++|+  +..++|+|.|++||+|..   |+
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~---Ce   40 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDR---CQ   40 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTT---TC
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCc---CC
Confidence            45555   899999998  678899999999999987   75

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.02  E-value=1.6e-05  Score=71.31  Aligned_cols=98  Identities=21%  Similarity=0.547  Sum_probs=65.7

Q ss_pred             CCCCC--CCCCCCCeeccCCCceeeecc----------------------ccCCcCCCCCCCCEeeeCCCCcEeeCCCCC
Q psy590           13 TAKVP--RPCQSDLDCLDAEACYSGQCE----------------------DLCAIASLCAPSAKCHVVKHRPVCTCPQGY   68 (257)
Q Consensus        13 ~~c~~--~~C~~~~~C~~~~g~~~C~C~----------------------~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~   68 (257)
                      +.|..  .||.++|+|.+  +.+.|.|.                      ++|.....|.+++.|.  .+.|.|.|.+||
T Consensus       196 ~~C~~~C~~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~--~~~~~C~C~~G~  271 (423)
T 2gy5_A          196 PECNHLCTACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL--PDPYGCSCATGW  271 (423)
T ss_dssp             TTSCEECCCCCTTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEE--TTTTEEECCBTC
T ss_pred             CCCCCCCCCCCCCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEEC--CCCCeEEeCCCc
Confidence            45554  38999999987  45677772                      1233235576677774  467999999999


Q ss_pred             ccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590           69 EGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus        69 ~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      .|.   .|+.          .|..+  ..|..|+.+|    +|.+++.|.+..   .|.|.+||.|..
T Consensus       272 ~G~---~C~~----------~C~~G--~~G~~C~~~C----~C~ngg~C~~~~---~C~C~~G~~G~~  317 (423)
T 2gy5_A          272 KGL---QCNE----------ACHPG--FYGPDCKLRC----SCNNGEMCDRFQ---GCLCSPGWQGLQ  317 (423)
T ss_dssp             BSG---GGCB----------CCCTT--BCSBTTCCBC----CCTTCCEEETTT---EEECCTTCBSTT
T ss_pred             ccc---cccC----------ccCCC--CcCCcccccc----cCCCCCEecCCC---ceECCCCCcCCC
Confidence            998   5652          23221  2334444433    588889998664   399999999984

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.99  E-value=1.1e-05  Score=76.79  Aligned_cols=78  Identities=28%  Similarity=0.653  Sum_probs=58.1

Q ss_pred             ccCC-cCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCee
Q psy590           39 DLCA-IASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVC  117 (257)
Q Consensus        39 ~~C~-~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C  117 (257)
                      ++|. ....|.  ..|+++.++|.|.|++||++.        +...|.+++||..               ..+|.  ..|
T Consensus       295 ~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~~~--------~~~~C~dideC~~---------------~~~C~--~~C  347 (699)
T 1n7d_A          295 NECLDNNGGCS--HVCNDLKIGYECLCPDGFQLV--------AQRRCEDIDECQD---------------PDTCS--QLC  347 (699)
T ss_dssp             CCTTSSTTTSC--TTCCCCTTCCCCCCCSSSCCC--------SSSCCCCCCCCSS---------------SSSCT--TTC
T ss_pred             ccccccccCcC--CCcccCCCCcEEeCCCCeEcC--------CCCcccCccccCC---------------CCccc--ccc
Confidence            4555 123454  479999999999999999974        2346889999974               25675  489


Q ss_pred             eeCCCceeeeCCCCCccCC-CCCcccC
Q psy590          118 INKNHATDCSCLEGFQGNG-FVGCLPV  143 (257)
Q Consensus       118 ~~~~g~~~C~C~~g~~g~~-~~~C~~~  143 (257)
                      +++.++|.|.|.+||.+.. ...|.++
T Consensus       348 ~n~~g~y~C~C~~G~~~~~~~~~C~~~  374 (699)
T 1n7d_A          348 VNLEGGYKCQCEEGFQLDPHTKACKAV  374 (699)
T ss_dssp             CBCSSCBCCCCCSSCBCCSSCCCCBCC
T ss_pred             ccCCCCeeeeeecccccCCCCCccccc
Confidence            9999999999999999764 2346544

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.97  E-value=6.9e-06  Score=47.90  Aligned_cols=32  Identities=31%  Similarity=0.751  Sum_probs=28.6

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      |+|. .++|.++++|++..++|.|.|++||+|.
T Consensus         4 d~C~-~~pC~ngg~C~~~~~~~~C~C~~G~~G~   35 (39)
T 1edm_B            4 DQCE-SNPCLNGGSCKDDINSYECWCPFGFEGK   35 (39)
T ss_dssp             CTTT-TCCCCTTCEEEEETTEEEEECCTTCCST
T ss_pred             ccCC-CCCCCCCCEeEcCCCceEeECCCCCcCC
Confidence            6777 7889999999999999999999999987

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.91  E-value=5.2e-06  Score=53.98  Aligned_cols=43  Identities=19%  Similarity=0.393  Sum_probs=35.5

Q ss_pred             CCCCCCCCCCCCCEecc-----CCCCeeeecCCCCccCCCCCcc-cCccccC
Q psy590          170 INPCQEDSCGEHAICIP-----KNHGIDCQCQSGHQGNPYIACL-SELICLC  215 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~-----~~g~~~C~C~~G~~g~~~~~C~-~~~~C~~  215 (257)
                      -|+|.+++|.++++|++     ..++|+|.|++||+|..   |+ +++++..
T Consensus         6 c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~---Ce~~i~~~~~   54 (63)
T 1hae_A            6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGAR---CTENVPMKVQ   54 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTT---SCEECCSSCT
T ss_pred             cCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCc---cCcCcCcccc
Confidence            46677789999999986     67899999999999987   86 6776643

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=97.89  E-value=8.1e-06  Score=66.52  Aligned_cols=106  Identities=25%  Similarity=0.606  Sum_probs=65.5

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCc
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHA  123 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~  123 (257)
                      ...|..++.|+.    ..|.|.+||.|.   .|+-      . .+....  .+.+..|..... ..+|.++++|+.    
T Consensus        95 ~~~Csg~G~C~~----g~C~C~~G~~G~---~Cec------~-~~~~~~--~~~~~~C~~~~~-~~~Csg~G~C~~----  153 (217)
T 2p28_B           95 RSLCHGKGFLEC----GICRCDTGYIGK---NCEC------Q-TQGRSS--QELEGSCRKDNN-SIICSGLGDCVC----  153 (217)
T ss_dssp             -CTTTTSEEEET----TEEEECTTEEST---TSCE------E-CCCCC---GGGGGGGBSSTT-SCBGGGTEEEET----
T ss_pred             CCccCCCceEEC----CEEECCCCccCC---cccc------c-Cccccc--ccCCCcCCCCCC-CCCCCCCCEEeC----
Confidence            467988899974    479999999998   6651      1 110000  000111211111 357888889984    


Q ss_pred             eeeeCCCCC------ccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCC---CCCCC--CEeccCCCCee
Q psy590          124 TDCSCLEGF------QGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQED---SCGEH--AICIPKNHGID  192 (257)
Q Consensus       124 ~~C~C~~g~------~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~---~C~~~--~~C~~~~g~~~  192 (257)
                      ..|.|.+||      .|.             .|+.                +++.|..+   +|.++  ++|+.    .+
T Consensus       154 g~C~C~~gw~~~~~~~G~-------------~Ce~----------------~~~~C~~~~g~~C~~~~~G~C~~----g~  200 (217)
T 2p28_B          154 GQCLCHTSDVPGKLIYGQ-------------YCEC----------------DTINCERYNGQVCGGPGRGLCFC----GK  200 (217)
T ss_dssp             TEEEECCCCSTTCCEEST-------------TSCE----------------ESSCSCEETTEETTCTTTEEEET----TE
T ss_pred             CceECCCCCCCcccEECC-------------Cccc----------------CCccCCCCCCCCCCCCCCcEEeC----Ce
Confidence            369999996      444             2211                13455443   58776  89985    28


Q ss_pred             eecCCCCccCC
Q psy590          193 CQCQSGHQGNP  203 (257)
Q Consensus       193 C~C~~G~~g~~  203 (257)
                      |.|.+||+|..
T Consensus       201 C~C~~G~~G~~  211 (217)
T 2p28_B          201 CRCHPGFEGSA  211 (217)
T ss_dssp             EEECTTEESTT
T ss_pred             eECCCCCccCC
Confidence            99999999987

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.86  E-value=6.7e-06  Score=49.90  Aligned_cols=35  Identities=29%  Similarity=0.602  Sum_probs=29.9

Q ss_pred             CCCCCC---CCCCCCCEeccCC--CCeeeecCCCCccCCCCCcc
Q psy590          170 INPCQE---DSCGEHAICIPKN--HGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       170 id~C~~---~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~~C~  208 (257)
                      +++|.+   +||.+ ++|+...  ++|.|.|++||+|..   |+
T Consensus         3 i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~---Ce   42 (46)
T 1k36_A            3 ITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVR---CE   42 (46)
T ss_dssp             EECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTT---SC
T ss_pred             cccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCC---CC
Confidence            788887   89998 8998754  689999999999987   65

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.81  E-value=1e-05  Score=53.88  Aligned_cols=35  Identities=20%  Similarity=0.422  Sum_probs=28.4

Q ss_pred             cCCCCCC--CCCCCCCEeccCCCCeeee-cCCCCccCC
Q psy590          169 CINPCQE--DSCGEHAICIPKNHGIDCQ-CQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~--~~C~~~~~C~~~~g~~~C~-C~~G~~g~~  203 (257)
                      |||||..  ++|.+++.|+|+.|+|+|. +..||.++.
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~   39 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDL   39 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcccccc
Confidence            4899975  6798888999999999998 456777654

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.81  E-value=1.8e-05  Score=61.57  Aligned_cols=77  Identities=22%  Similarity=0.498  Sum_probs=47.8

Q ss_pred             CeeeeCCCceeee-CCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCC------EeccC
Q psy590          115 AVCINKNHATDCS-CLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHA------ICIPK  187 (257)
Q Consensus       115 ~~C~~~~g~~~C~-C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~------~C~~~  187 (257)
                      +.|...  ...|. |.++|+|.             .|+   +|.+||++....-...+.|..=.|.+.+      .|...
T Consensus        68 ~~C~~~--tG~C~~C~~g~~G~-------------~Ce---~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~  129 (162)
T 1klo_A           68 GNCNRL--TGECLKCIYNTAGF-------------YCD---RCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPV  129 (162)
T ss_dssp             CCBCTT--TCCBCCBCTTEETT-------------TTC---EECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTT
T ss_pred             CcccCC--CCcccCCCCCCcCC-------------CcC---cCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCC
Confidence            355432  34684 99999998             454   3788888865321223345443455443      67654


Q ss_pred             CCCeeeecCCCCccCCCCCcccCccccCCC
Q psy590          188 NHGIDCQCQSGHQGNPYIACLSELICLCHL  217 (257)
Q Consensus       188 ~g~~~C~C~~G~~g~~~~~C~~~~~C~~~~  217 (257)
                      .  .+|.|++||+|..   |.   .|....
T Consensus       130 t--G~C~C~~g~~G~~---Cd---~C~~g~  151 (162)
T 1klo_A          130 T--GQCQCLPHVSGRD---CG---TCDPGY  151 (162)
T ss_dssp             T--CCCCBCTTEESTT---CC---EECTTC
T ss_pred             C--CEeECCCCCcCCC---CC---CCCCCc
Confidence            4  4899999999987   63   365554

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=97.80  E-value=3.9e-06  Score=70.54  Aligned_cols=44  Identities=27%  Similarity=0.558  Sum_probs=36.9

Q ss_pred             cCCCCC--CCCCCCCCEeccCCCCeeeecCCCCccCCCCCcccCccc
Q psy590          169 CINPCQ--EDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELIC  213 (257)
Q Consensus       169 ~id~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~C  213 (257)
                      |+|||.  .++|+.++.|+|+.|+|.|.|++||.|++.. |.++|+.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~-C~d~d~P   49 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSP   49 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSS-EEETTCE
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCc-CCCCCCC
Confidence            489997  4789999999999999999999999999876 9988763

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.75  E-value=1.4e-05  Score=75.42  Aligned_cols=141  Identities=20%  Similarity=0.342  Sum_probs=82.0

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCC--CCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCC
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNP--LGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN  121 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~--~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~  121 (257)
                      ...|..++.|.    ...|.|.+||.|.   .|+-...  ..-....+|...+            ...+|.+++.|+.  
T Consensus       434 s~~Cs~~G~C~----~g~C~C~~Gy~G~---~Cec~~~~~~~~~~~~~C~~~~------------~~~~Cs~~G~C~~--  492 (687)
T 3k6s_B          434 RSLCHGKGFLE----CGICRCDTGYIGK---NCECQTQGRSSQELEGSCRKDN------------NSIICSGLGDCVC--  492 (687)
T ss_dssp             SSTGGGSEEES----SSSEEECSSEEST---TSCEESSSCCCSGGGSTTSSST------------TSCGGGSSEEEET--
T ss_pred             CCCCCCCCEEe----CCEeEcCCCCcCC---cccccCCcCCccccCCCCCCCC------------CCCcCCCCCEEeC--
Confidence            56788788886    2469999999998   6651000  0000001243210            0245888899983  


Q ss_pred             CceeeeCC------CCCccCCCC----CcccCCC----C--CCCCC-CCCCCCCCCccCCCCCc-cCCCCCCCC-CCC--
Q psy590          122 HATDCSCL------EGFQGNGFV----GCLPVRN----Y--QPICQ-YNEDCPPDKLCDRLNRI-CINPCQEDS-CGE--  180 (257)
Q Consensus       122 g~~~C~C~------~g~~g~~~~----~C~~~~~----~--~~~C~-~~~~C~~g~~~~~~~~~-~id~C~~~~-C~~--  180 (257)
                      +  .|.|.      +||.|..-.    .|...+.    .  .+.|. ..+.|.+||.|....+. +++.|.... ..-  
T Consensus       493 G--~C~C~~~~~~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~  570 (687)
T 3k6s_B          493 G--QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSG  570 (687)
T ss_dssp             T--EEEECCCCSTTCCEESTTSCEESSCSCEETTEETSHHHHEEEETTEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSS
T ss_pred             C--EEEcCCCCCCCCCccccccccccccccCCCCcCcCCCCCCeEECCEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCC
Confidence            2  89999      999988621    2332100    0  12232 24668999998875432 345665321 111  


Q ss_pred             CCEeccCCCCeeeecCCCCccCCCCCcccCcccc
Q psy590          181 HAICIPKNHGIDCQCQSGHQGNPYIACLSELICL  214 (257)
Q Consensus       181 ~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~C~  214 (257)
                      +++|+.    .+|.|++||+|..   |+.-..|.
T Consensus       571 ~G~C~~----g~C~C~~Gy~G~~---Ce~c~~C~  597 (687)
T 3k6s_B          571 RGRCRC----NVCECHSGYQLPL---CQECPGCP  597 (687)
T ss_dssp             SCCBCS----SCBCCSTTCCTTT---TCCCTTSC
T ss_pred             CCcCCC----CEEECCCCCcCCC---CCCCCCCC
Confidence            234544    5799999999997   98644564

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=97.71  E-value=2.4e-05  Score=49.22  Aligned_cols=36  Identities=22%  Similarity=0.692  Sum_probs=28.9

Q ss_pred             cccCCcCCCCCCCCEee-----eCCCCcEeeCCCCCccCCCCCcc
Q psy590           38 EDLCAIASLCAPSAKCH-----VVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~-----~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +|+|. ..+|.++++|+     +..++|.|.|++||+|.   +|+
T Consensus         8 ~~eC~-s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~---~CE   48 (55)
T 3u7u_G            8 CAEKE-KTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD---RCQ   48 (55)
T ss_dssp             CCSTT-TTTSCTTCEEEEECCC--CCCEEEEECTTEEST---TSC
T ss_pred             CCCCc-CCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCC---CcC
Confidence            37787 78999999994     45578999999999998   666

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.68  E-value=1.8e-05  Score=49.91  Aligned_cols=44  Identities=20%  Similarity=0.500  Sum_probs=33.0

Q ss_pred             CCCCC--CCCCCCCEeccCCCCeeeecCCCCccCC-CCCcccCccccCC
Q psy590          171 NPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGNP-YIACLSELICLCH  216 (257)
Q Consensus       171 d~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~-~~~C~~~~~C~~~  216 (257)
                      |+|..  ..|.  ..|+|+.|+|+|.|++||+... ..+|.++++|..+
T Consensus         2 dEC~~~~~~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~cg   48 (55)
T 2jkh_L            2 KLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCG   48 (55)
T ss_dssp             CCTTTGGGGCS--SEEEEETTEEEEECCTTEEECTTSSCEEESSSSCTT
T ss_pred             ccccCCCCCcC--cEeEcCCCCeEEeCCCCCEECCCCCeeccCccccCC
Confidence            56653  3465  4899999999999999998532 2359999988543

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.67  E-value=3.1e-05  Score=48.23  Aligned_cols=33  Identities=21%  Similarity=0.565  Sum_probs=27.5

Q ss_pred             cCCCCCC----------CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQE----------DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~----------~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |||+|..          .+|.  +.|+|+.|+|+|.|++||++..
T Consensus         3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~~~   45 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEECT
T ss_pred             ccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeECC
Confidence            4788864          4686  5999999999999999999754

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=97.63  E-value=1.8e-05  Score=72.86  Aligned_cols=62  Identities=18%  Similarity=0.393  Sum_probs=13.0

Q ss_pred             ceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccC--CCCeeeecCCCCc
Q psy590          123 ATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPK--NHGIDCQCQSGHQ  200 (257)
Q Consensus       123 ~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~--~g~~~C~C~~G~~  200 (257)
                      .+.|.|.+||.|.             .|.   .|.+||.+..   .+++.|.+.+|.+++.+...  ...++|.|++||+
T Consensus       459 tg~C~C~~g~~G~-------------~Ce---~C~~G~~g~~---~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~  519 (525)
T 4aqs_A          459 TGYCYCKRLVTGQ-------------RCD---QCLPQHWGLS---NDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMI  519 (525)
T ss_dssp             TCCBCBCTTCCST-------------TTC---C-----------------------------------------------
T ss_pred             CCEEECCCCCcCC-------------Ccc---cCCCCccCCC---CCCCCCcCCCCCCCCccCCccCCCCCeeECCCCCc
Confidence            4579999999998             453   4778887643   23677877778777766543  2345899999999


Q ss_pred             cCC
Q psy590          201 GNP  203 (257)
Q Consensus       201 g~~  203 (257)
                      |..
T Consensus       520 G~~  522 (525)
T 4aqs_A          520 GRQ  522 (525)
T ss_dssp             ---
T ss_pred             CCC
Confidence            986

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.62  E-value=9.4e-05  Score=46.15  Aligned_cols=37  Identities=24%  Similarity=0.621  Sum_probs=30.0

Q ss_pred             cccCCc--CCCCCCCCEee--eCCCCcEeeCCCCCccCCCCCcc
Q psy590           38 EDLCAI--ASLCAPSAKCH--VVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        38 ~~~C~~--~~~C~~~~~C~--~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +++|..  .++|.++++|+  +..++|.|.|++||+|.   .|+
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~---~Ce   43 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD---RCQ   43 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSS---SSC
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCC---cCC
Confidence            367772  24899999999  77789999999999998   665

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.57  E-value=6.5e-05  Score=45.19  Aligned_cols=34  Identities=24%  Similarity=0.529  Sum_probs=27.5

Q ss_pred             cCCcCC---CCCCCCEee--eCCCCcEeeCCCCCccCCCCCcc
Q psy590           40 LCAIAS---LCAPSAKCH--VVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        40 ~C~~~~---~C~~~~~C~--~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +|. ..   +|.++++|+  +..++|.|.|++||+|.   +|+
T Consensus         2 ~C~-~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~---~Ce   40 (45)
T 1a3p_A            2 GXP-SSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGD---RCQ   40 (45)
T ss_dssp             CCT-TCCSSCCSSSCEEEECTTTSSEEEECCTTEETT---TTC
T ss_pred             Ccc-cCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCC---cCC
Confidence            455 44   899999998  56689999999999998   565

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.57  E-value=1.6e-05  Score=51.23  Aligned_cols=33  Identities=27%  Similarity=0.781  Sum_probs=28.8

Q ss_pred             cccCCcCCCCCCC--CEeeeCCCCcEeeCCCCCc-cC
Q psy590           38 EDLCAIASLCAPS--AKCHVVKHRPVCTCPQGYE-GN   71 (257)
Q Consensus        38 ~~~C~~~~~C~~~--~~C~~~~g~~~C~C~~G~~-g~   71 (257)
                      +|+|. .+||.++  ++|++..++|.|.|++||+ |.
T Consensus        11 ~d~C~-snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~   46 (61)
T 2k2s_B           11 PAACS-SNPCGPEAAGTCKETNSGYICRCNQGYRISL   46 (61)
T ss_dssp             CCHHH-HCSSCSSSCCEEEECSSEEEEECCTTEEEEE
T ss_pred             CCcCc-CCCCcCCCccccccCCCceEeECCCCCccCC
Confidence            46776 7889888  7999999999999999999 87

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.53  E-value=3.8e-05  Score=50.80  Aligned_cols=47  Identities=17%  Similarity=0.395  Sum_probs=35.7

Q ss_pred             ccCCCCCCC--CCCCCCEeccCCC-CeeeecCCCCccCC-CCCcccCccccCC
Q psy590          168 ICINPCQED--SCGEHAICIPKNH-GIDCQCQSGHQGNP-YIACLSELICLCH  216 (257)
Q Consensus       168 ~~id~C~~~--~C~~~~~C~~~~g-~~~C~C~~G~~g~~-~~~C~~~~~C~~~  216 (257)
                      .|+|+|..+  .|.  ..|+++.+ +|.|.|++||+... .++|.++++|.-+
T Consensus         3 ~d~~eC~~~nggC~--h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~Cg   53 (69)
T 1kli_L            3 DDQLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCG   53 (69)
T ss_dssp             SCCCCTTSGGGGCS--SEEEEETTTEEEEECCTTEEECTTSSCEEECSSSCTT
T ss_pred             cccccccCCCCCcC--CEeEcCCCCCEEEeCCCCCeECCCCCcccCcccccCC
Confidence            358899753  464  58999998 79999999998543 3469999987543

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.45  E-value=6e-05  Score=48.86  Aligned_cols=35  Identities=23%  Similarity=0.727  Sum_probs=28.3

Q ss_pred             ccCCcCCCCCCCCEeee-----CCCCcEeeCCCCCccCCCCCcc
Q psy590           39 DLCAIASLCAPSAKCHV-----VKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~-----~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      ++|. ..+|.++++|++     ..++|.|.|++||+|.   .|+
T Consensus         7 ~~C~-~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~---~Ce   46 (63)
T 1hae_A            7 AEKE-KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA---RCT   46 (63)
T ss_dssp             CHHH-HTTSCTTCEEEEEESSSSSCCEEEECCTTEEST---TSC
T ss_pred             CCCC-CCcCCCCcEEecCCccCCCCCEEEECCCCCcCC---ccC
Confidence            3455 678988899986     5578999999999998   665

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.43  E-value=2.1e-05  Score=71.37  Aligned_cols=60  Identities=25%  Similarity=0.790  Sum_probs=20.8

Q ss_pred             CCCCCCeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccCCC
Q psy590          110 PCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNH  189 (257)
Q Consensus       110 ~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~~g  189 (257)
                      +|.+ +.|++.   +.|.|.+||.|.             .|.                  ++.|.. +|.++++|++.  
T Consensus       398 ~C~n-G~C~~~---~~C~C~~G~~G~-------------~C~------------------~~~C~~-~C~~~g~C~~~--  439 (463)
T 2wg3_C          398 LCRN-GYCTPT---GKCCCSPGWEGD-------------FCR------------------TAKCEP-ACRHGGVCVRP--  439 (463)
T ss_dssp             HCCS-EEECTT---SCEEECTTEEST-------------TSC------------------EECC----------------
T ss_pred             CCCC-CccCCC---CeECCCCCcCCC-------------cCC------------------cCcCCC-CCCCCCEECCC--
Confidence            5775 789753   479999999998             332                  456765 89988999875  


Q ss_pred             CeeeecCCCCccCCCCCcccCc
Q psy590          190 GIDCQCQSGHQGNPYIACLSEL  211 (257)
Q Consensus       190 ~~~C~C~~G~~g~~~~~C~~~~  211 (257)
                       ++|.|++||+|..   |+..|
T Consensus       440 -~~C~C~~G~~G~~---C~~~~  457 (463)
T 2wg3_C          440 -NKCLCKKGYLGPQ---CEQVD  457 (463)
T ss_dssp             ----------------------
T ss_pred             -CEEECCCCcccCC---CCCCc
Confidence             6899999999987   76443

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.42  E-value=7.6e-05  Score=46.98  Aligned_cols=45  Identities=27%  Similarity=0.629  Sum_probs=34.0

Q ss_pred             ccCC-cCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCC
Q psy590           39 DLCA-IASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECAS   92 (257)
Q Consensus        39 ~~C~-~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~   92 (257)
                      |+|. ..+.|..  .|+|+.|+|.|.|++||.+..       +...|.++++|.-
T Consensus         2 dEC~~~~~~C~~--~C~nt~Gsy~C~C~~Gy~L~~-------d~~~C~didec~c   47 (55)
T 2jkh_L            2 KLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLAD-------NGKACIPTGPYPC   47 (55)
T ss_dssp             CCTTTGGGGCSS--EEEEETTEEEEECCTTEEECT-------TSSCEEESSSSCT
T ss_pred             ccccCCCCCcCc--EeEcCCCCeEEeCCCCCEECC-------CCCeeccCccccC
Confidence            5676 3456863  899999999999999998653       2446788887753

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.38  E-value=5e-05  Score=58.67  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCCCEeccCCCCeeeecCCCCccCCCCCcccCccccC
Q psy590          170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLC  215 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~C~~  215 (257)
                      .++|..++|.++++|++..++|+|.|++||+|+.   |+.+++|..
T Consensus       119 ~~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~---Ce~~~~c~~  161 (162)
T 1g1s_A          119 TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPE---CEYVRDDDD  161 (162)
T ss_dssp             ECCCCTTGGGGSEEEEECSSSEEEEECTTEESTT---SCEECC---
T ss_pred             eCCCcCCCCCCCCEEecCCCCceEeCCCCCcCcc---cccCcccCC
Confidence            4678788899899999999999999999999987   998888864

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.31  E-value=0.00018  Score=47.82  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=34.1

Q ss_pred             CCCCCCCeeeeCCCceeee-CCCCCccCCCC-CcccCCCCCCCCCCCCCCCCCCccCC
Q psy590          109 SPCAPNAVCINKNHATDCS-CLEGFQGNGFV-GCLPVRNYQPICQYNEDCPPDKLCDR  164 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~-C~~g~~g~~~~-~C~~~~~~~~~C~~~~~C~~g~~~~~  164 (257)
                      .+|.+++.|+|+.|+|.|. +..||.+.... .+..   ....+.....|.+||....
T Consensus        11 ~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~~~~~---~~~~~~~~~~C~~Gy~~~~   65 (71)
T 2kl7_A           11 EACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPP---PVPPAQHPNPCPPGYEPDD   65 (71)
T ss_dssp             CSCTTEEEEEETTCCEEEEETTSCCCSCCSCSSCCC---SSCSCSSCCCSCTTEEEEC
T ss_pred             CCCCCCCEeECCCCCeEecccCCcccccccCCcccc---ccccCccccCCCCCeeeCC
Confidence            6798778999999999998 45688765422 1211   0112223346899997654

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=97.15  E-value=0.00084  Score=47.32  Aligned_cols=68  Identities=21%  Similarity=0.486  Sum_probs=52.4

Q ss_pred             CCCCCCCCEeee-CCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCC-CCCCCcccCCCccCCCCCCCCCCCCCeeeeCC
Q psy590           44 ASLCAPSAKCHV-VKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEE-CASTEACINSQCQKPCAVHSPCAPNAVCINKN  121 (257)
Q Consensus        44 ~~~C~~~~~C~~-~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~e-C~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~  121 (257)
                      ...|..++.|.. .+|...|+|..||.+++.         .|+.++. |....              ..|..++.|....
T Consensus        15 ~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~---------~Cv~~Np~C~~nN--------------GGCd~nAeC~~~~   71 (105)
T 1n1i_A           15 DTNVPENAACYRYLDGTEEWRCLLGFKEVGG---------KCVPASITCEENN--------------GGCAPEAECTMDD   71 (105)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECTTEEECSS---------SEEECCCCTTSGG--------------GGSCTTSEEEECT
T ss_pred             CCCCCCCCCeEECCCCCEeEEEECCeeccCC---------EEEECCcchhhcC--------------CCcCCCcEeEECC
Confidence            346778899988 557889999999999854         3665566 55432              6799999999775


Q ss_pred             -CceeeeCCCCCcc
Q psy590          122 -HATDCSCLEGFQG  134 (257)
Q Consensus       122 -g~~~C~C~~g~~g  134 (257)
                       ....|.|..+|.-
T Consensus        72 ~~ki~C~C~~~~~~   85 (105)
T 1n1i_A           72 KKEVECKCTKEGSE   85 (105)
T ss_dssp             TSCEEEECCSTTCC
T ss_pred             CCEEEeECCCCCCc
Confidence             7889999999753

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.08  E-value=0.00061  Score=47.69  Aligned_cols=66  Identities=24%  Similarity=0.697  Sum_probs=49.8

Q ss_pred             CCCCCCCeeee-CCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCC--CCCCCCEec
Q psy590          109 SPCAPNAVCIN-KNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQED--SCGEHAICI  185 (257)
Q Consensus       109 ~~C~~~~~C~~-~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~--~C~~~~~C~  185 (257)
                      ..|..++.|.+ .++...|+|.+||.+++.. |..+.                         .+.|+.+  -|..+|+|.
T Consensus        10 ~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~-Cv~~~-------------------------~~sC~~nNGGCd~nA~C~   63 (99)
T 1ob1_C           10 KQCPQNSGCFRHLDEREECKCLLNYKQEGDK-CVENP-------------------------NPTCNENNGGCDADAKCT   63 (99)
T ss_dssp             CCCCTTEEEECCTTSCCEEEECTTEEEETTE-EEECS-------------------------CCCSTTGGGGCCTTEEEE
T ss_pred             CCCCCCCCeEEcCCCCEEEEecCCeecCCCe-EeeCC-------------------------CCChhhcCCCcCCCceeE
Confidence            46778899986 5688999999999987633 44421                         2467653  489999998


Q ss_pred             cCC-----CCeeeecCCCCc
Q psy590          186 PKN-----HGIDCQCQSGHQ  200 (257)
Q Consensus       186 ~~~-----g~~~C~C~~G~~  200 (257)
                      ...     +...|.|.+||.
T Consensus        64 ~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C           64 EEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             CCSCSSSSCCCEEEECSTTC
T ss_pred             ecCCcccCCceEeEeCCCCc
Confidence            875     578999999975

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.07  E-value=0.0002  Score=44.29  Aligned_cols=33  Identities=18%  Similarity=0.384  Sum_probs=26.5

Q ss_pred             CEeccCCCCeeeecCCCCccCC-CCCcccCcccc
Q psy590          182 AICIPKNHGIDCQCQSGHQGNP-YIACLSELICL  214 (257)
Q Consensus       182 ~~C~~~~g~~~C~C~~G~~g~~-~~~C~~~~~C~  214 (257)
                      ..|+|+.|+|+|.|++||+... ..+|.+++++.
T Consensus        10 ~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~p   43 (51)
T 1kig_L           10 QFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP   43 (51)
T ss_dssp             SCCCEETTEECCCCCTTEEECTTSSCEEECSSSC
T ss_pred             CEeEcCCCCeEEeCCCCcEECCCCCccccCCccc
Confidence            3799999999999999998532 23599998863

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.04  E-value=0.00031  Score=42.39  Aligned_cols=35  Identities=26%  Similarity=0.749  Sum_probs=27.4

Q ss_pred             ccCCc--CCCCCCCCEeeeCC--CCcEeeCCCCCccCCCCCcc
Q psy590           39 DLCAI--ASLCAPSAKCHVVK--HRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~--~~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~~C~   77 (257)
                      ++|..  .++|.+ ++|+...  ++|.|.|++||+|.   +|+
T Consensus         4 ~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~---~Ce   42 (46)
T 1k36_A            4 TKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGV---RCE   42 (46)
T ss_dssp             ECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSST---TSC
T ss_pred             ccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccC---CCC
Confidence            56661  278988 7998754  57999999999998   665

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.03  E-value=0.00048  Score=48.22  Aligned_cols=68  Identities=24%  Similarity=0.605  Sum_probs=50.4

Q ss_pred             CCCCCCCCEeeeC-CCCcEeeCCCCCccCCCCCccCCCCCCCCcC--CCCCCCCcccCCCccCCCCCCCCCCCCCeeeeC
Q psy590           44 ASLCAPSAKCHVV-KHRPVCTCPQGYEGNPATKCYLPNPLGCVSN--EECASTEACINSQCQKPCAVHSPCAPNAVCINK  120 (257)
Q Consensus        44 ~~~C~~~~~C~~~-~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~--~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~  120 (257)
                      ...|..++.|... .|...|+|.+||.+++. .        |+.+  ..|...+              ..|..++.|...
T Consensus         9 ~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~-~--------Cv~~~~~sC~~nN--------------GGCd~nA~C~~~   65 (99)
T 1ob1_C            9 KKQCPQNSGCFRHLDEREECKCLLNYKQEGD-K--------CVENPNPTCNENN--------------GGCDADAKCTEE   65 (99)
T ss_dssp             SCCCCTTEEEECCTTSCCEEEECTTEEEETT-E--------EEECSCCCSTTGG--------------GGCCTTEEEECC
T ss_pred             cCCCCCCCCeEEcCCCCEEEEecCCeecCCC-e--------EeeCCCCChhhcC--------------CCcCCCceeEec
Confidence            4567888999874 58899999999999864 3        4433  3454432              579999999866


Q ss_pred             C-----CceeeeCCCCCcc
Q psy590          121 N-----HATDCSCLEGFQG  134 (257)
Q Consensus       121 ~-----g~~~C~C~~g~~g  134 (257)
                      .     +...|.|.+||.-
T Consensus        66 ~~~~~~~ki~C~C~~g~~~   84 (99)
T 1ob1_C           66 DSGSNGKKITCECTKPDSY   84 (99)
T ss_dssp             SCSSSSCCCEEEECSTTCC
T ss_pred             CCcccCCceEeEeCCCCcc
Confidence            4     5789999999763

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.99  E-value=0.00025  Score=44.19  Aligned_cols=29  Identities=21%  Similarity=0.588  Sum_probs=25.7

Q ss_pred             CCCCCCCCEec--cCCCCeeeecCCCCccCC
Q psy590          175 EDSCGEHAICI--PKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       175 ~~~C~~~~~C~--~~~g~~~C~C~~G~~g~~  203 (257)
                      .++|.++++|+  +..++|.|.|++||+|..
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~   41 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGER   41 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTT
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCC
Confidence            36899999998  667889999999999987

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=96.95  E-value=0.0021  Score=45.29  Aligned_cols=64  Identities=27%  Similarity=0.687  Sum_probs=49.9

Q ss_pred             CCCCCCCeeee-CCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCC-CCCC--CCCCCCEe
Q psy590          109 SPCAPNAVCIN-KNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINP-CQED--SCGEHAIC  184 (257)
Q Consensus       109 ~~C~~~~~C~~-~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~-C~~~--~C~~~~~C  184 (257)
                      ..|..++.|.. .+|...|+|..||.+++.. |..                           +++ |+.+  -|..+|+|
T Consensus        16 t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~-Cv~---------------------------~Np~C~~nNGGCd~nAeC   67 (105)
T 1n1i_A           16 TNVPENAACYRYLDGTEEWRCLLGFKEVGGK-CVP---------------------------ASITCEENNGGCAPEAEC   67 (105)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECTTEEECSSS-EEE---------------------------CCCCTTSGGGGSCTTSEE
T ss_pred             CCCCCCCCeEECCCCCEeEEEECCeeccCCE-EEE---------------------------CCcchhhcCCCcCCCcEe
Confidence            46788899997 7788899999999987543 333                           455 5543  48999999


Q ss_pred             ccCC-CCeeeecCCCCc
Q psy590          185 IPKN-HGIDCQCQSGHQ  200 (257)
Q Consensus       185 ~~~~-g~~~C~C~~G~~  200 (257)
                      .... ....|.|.++|.
T Consensus        68 ~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           68 TMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             EECTTSCEEEECCSTTC
T ss_pred             EECCCCEEEeECCCCCC
Confidence            9885 788999999974

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.88  E-value=0.00022  Score=59.99  Aligned_cols=36  Identities=28%  Similarity=0.592  Sum_probs=30.4

Q ss_pred             cccCC-cCCCCCCCCEeeeCCCCcEeeCCCCCccCCC
Q psy590           38 EDLCA-IASLCAPSAKCHVVKHRPVCTCPQGYEGNPA   73 (257)
Q Consensus        38 ~~~C~-~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~   73 (257)
                      +|+|. ..+.|..++.|+|+.|+|.|.|++||.|++.
T Consensus         5 iDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~   41 (285)
T 1gl4_A            5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGR   41 (285)
T ss_dssp             --CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSS
T ss_pred             chhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCC
Confidence            36777 4689999999999999999999999999864

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.66  E-value=0.0021  Score=39.65  Aligned_cols=26  Identities=27%  Similarity=0.583  Sum_probs=22.4

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      .+|.  ..|+|+.|+|.|.|.+||.+..
T Consensus        20 ~~C~--~~C~n~~Gsy~C~C~~Gy~~~~   45 (53)
T 1apq_A           20 PQCQ--HLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             CTTS--SEEEEETTEEEEECSTTCEECT
T ss_pred             CCCC--CEeECCCCCeEEECCCCCeECC
Confidence            5685  4999999999999999998764

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=96.63  E-value=0.0008  Score=41.85  Aligned_cols=34  Identities=18%  Similarity=0.459  Sum_probs=27.2

Q ss_pred             CEeccCCC-CeeeecCCCCccCC-CCCcccCccccC
Q psy590          182 AICIPKNH-GIDCQCQSGHQGNP-YIACLSELICLC  215 (257)
Q Consensus       182 ~~C~~~~g-~~~C~C~~G~~g~~-~~~C~~~~~C~~  215 (257)
                      ..|+++.+ +|+|.|++||+... .++|.+++||.-
T Consensus        11 ~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec~c   46 (53)
T 2bz6_L           11 QYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC   46 (53)
T ss_dssp             SEEEEETTTEEEEECCTTEEECTTSSCEEECSSSCT
T ss_pred             CEeEcCCCCCEEeeCCCCCEECCCCCcccCCccccC
Confidence            47999998 79999999998542 245999998743

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.61  E-value=0.00073  Score=42.04  Aligned_cols=31  Identities=26%  Similarity=0.719  Sum_probs=26.1

Q ss_pred             CCCCCCCCEee--eCCCCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCH--VVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~--~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .++|.++++|+  +..++|.|.|++||+|.   +|+
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~---~Ce   43 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGE---RCQ   43 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEEST---TSC
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCC---CCC
Confidence            57898999998  55678999999999998   665

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.58  E-value=0.00056  Score=42.37  Aligned_cols=30  Identities=27%  Similarity=0.562  Sum_probs=25.4

Q ss_pred             CCCCCCCEecc----CCCCeeeecCCCCccCCCCCcc
Q psy590          176 DSCGEHAICIP----KNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       176 ~~C~~~~~C~~----~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      ++|.++++|++    ..++|.|.|++||+|..   |+
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~---Ce   47 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQR---CE   47 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCTTEESTT---SC
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCCCCcCCC---Cc
Confidence            57889999986    35689999999999987   65

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.57  E-value=0.0012  Score=43.41  Aligned_cols=45  Identities=20%  Similarity=0.491  Sum_probs=33.3

Q ss_pred             ccCC-cCCCCCCCCEeeeCCC-CcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCC
Q psy590           39 DLCA-IASLCAPSAKCHVVKH-RPVCTCPQGYEGNPATKCYLPNPLGCVSNEECAS   92 (257)
Q Consensus        39 ~~C~-~~~~C~~~~~C~~~~g-~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~   92 (257)
                      ++|. ....|..  .|+++.| +|.|.|++||.+..       +...|.+++||.-
T Consensus         6 ~eC~~~nggC~h--~C~n~~g~s~~C~C~~Gy~L~~-------D~~tC~d~dec~C   52 (69)
T 1kli_L            6 LICVNENGGCEQ--YCSDHTGTKRSCRCHEGYSLLA-------DGVSCTPTVEYPC   52 (69)
T ss_dssp             CCTTSGGGGCSS--EEEEETTTEEEEECCTTEEECT-------TSSCEEECSSSCT
T ss_pred             ccccCCCCCcCC--EeEcCCCCCEEEeCCCCCeECC-------CCCcccCcccccC
Confidence            5676 2456764  7999998 79999999998763       3456888887653

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.39  E-value=0.0011  Score=40.81  Aligned_cols=39  Identities=26%  Similarity=0.570  Sum_probs=29.0

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCC
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECA   91 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~   91 (257)
                      .+.|..  .|+|+.|+|.|.|++||.+..       +...|.+++|+.
T Consensus         5 ng~C~~--~C~n~~gs~~C~C~~Gy~L~~-------d~~tC~dide~p   43 (51)
T 1kig_L            5 NGGCDQ--FCREERSEVRCSCAHGYVLGD-------DSKSCVSTERFP   43 (51)
T ss_dssp             TTSSSS--CCCEETTEECCCCCTTEEECT-------TSSCEEECSSSC
T ss_pred             CCCcCC--EeEcCCCCeEEeCCCCcEECC-------CCCccccCCccc
Confidence            345653  599999999999999998653       245677777653

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.04  E-value=0.0028  Score=39.15  Aligned_cols=31  Identities=32%  Similarity=0.725  Sum_probs=25.5

Q ss_pred             CCCCCCCCEeeeC----CCCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCHVV----KHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~~~----~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .++|.++++|++.    .++|.|.|++||+|.   +|+
T Consensus        13 ~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~---~Ce   47 (52)
T 3ca7_A           13 AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQ---RCE   47 (52)
T ss_dssp             HHTSCTTCEEEEEEETTEEEEEEECCTTEEST---TSC
T ss_pred             CCcCCCCCEEecCccCCCCCEEEECCCCCcCC---CCc
Confidence            4688899999863    467999999999998   665

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.95  E-value=0.0033  Score=38.97  Aligned_cols=38  Identities=21%  Similarity=0.516  Sum_probs=29.0

Q ss_pred             CCCCCCCEeeeCCC-CcEeeCCCCCccCCCCCccCCCCCCCCcCCCCC
Q psy590           45 SLCAPSAKCHVVKH-RPVCTCPQGYEGNPATKCYLPNPLGCVSNEECA   91 (257)
Q Consensus        45 ~~C~~~~~C~~~~g-~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~   91 (257)
                      ..|..  .|+++.+ +|.|.|++||.+..       +...|.+++||.
T Consensus         7 ggC~~--~C~n~~ggs~~C~C~~Gy~L~~-------Dg~tC~d~dec~   45 (53)
T 2bz6_L            7 GGCEQ--YCSDHTGTKRSCRCHEGYSLLA-------DGVSCTPTVEYP   45 (53)
T ss_dssp             GGCSS--EEEEETTTEEEEECCTTEEECT-------TSSCEEECSSSC
T ss_pred             CCcCC--EeEcCCCCCEEeeCCCCCEECC-------CCCcccCCcccc
Confidence            45653  6999998 79999999998763       345688888764

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=95.81  E-value=0.0032  Score=58.14  Aligned_cols=36  Identities=31%  Similarity=0.827  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCCEecc-CCCCeeeecC-CCCccCCCCCcc
Q psy590          170 INPCQEDSCGEHAICIP-KNHGIDCQCQ-SGHQGNPYIACL  208 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~-~~g~~~C~C~-~G~~g~~~~~C~  208 (257)
                      +|+|.++||.++|+|++ ..++|+|.|+ .||+|..   |+
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~---Ce   39 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPN---CT   39 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTT---TC
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCC---CC
Confidence            68899999999999999 8899999999 9999987   75

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=95.79  E-value=0.0026  Score=40.28  Aligned_cols=30  Identities=27%  Similarity=0.598  Sum_probs=25.0

Q ss_pred             CCCCCCEecc----CCCCeeeecCCCCccCCCCCccc
Q psy590          177 SCGEHAICIP----KNHGIDCQCQSGHQGNPYIACLS  209 (257)
Q Consensus       177 ~C~~~~~C~~----~~g~~~C~C~~G~~g~~~~~C~~  209 (257)
                      +|.++++|+.    ..+.|.|.|++||+|..   |+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~---Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQR---CEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSS---SCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCC---Ccc
Confidence            7999999983    44578999999999987   753

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=95.66  E-value=0.0035  Score=48.02  Aligned_cols=32  Identities=22%  Similarity=0.587  Sum_probs=29.2

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      ++|. ..+|.+++.|++..++|.|.|++||.|.
T Consensus       120 ~~c~-~~~C~~~g~C~~~~~~~~c~C~~g~~G~  151 (162)
T 1g1s_A          120 ASCQ-DMSCSKQGECLETIGNYTCSCYPGFYGP  151 (162)
T ss_dssp             CCCC-TTGGGGSEEEEECSSSEEEEECTTEEST
T ss_pred             CCCc-CCCCCCCCEEecCCCCceEeCCCCCcCc
Confidence            5677 7889989999999999999999999997

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=95.60  E-value=0.0054  Score=56.91  Aligned_cols=34  Identities=26%  Similarity=0.770  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCCCCEecc-CCCCeeeecC-CCCccCC
Q psy590          170 INPCQEDSCGEHAICIP-KNHGIDCQCQ-SGHQGNP  203 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~-~~g~~~C~C~-~G~~g~~  203 (257)
                      +|+|.++||.++|+|++ ..++|.|.|+ +||+|..
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~   36 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGEN   36 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTT
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCC
Confidence            47899999999999996 4589999999 9999987

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=95.54  E-value=0.006  Score=49.45  Aligned_cols=62  Identities=23%  Similarity=0.657  Sum_probs=42.5

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCC------CccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCC--C
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQG------YEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPN--A  115 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G------~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~--~  115 (257)
                      ..+|.++++|+.    ..|.|.+|      |.|.   .|+       .+.+.|....             ..+|..+  +
T Consensus       142 ~~~Csg~G~C~~----g~C~C~~gw~~~~~~~G~---~Ce-------~~~~~C~~~~-------------g~~C~~~~~G  194 (217)
T 2p28_B          142 SIICSGLGDCVC----GQCLCHTSDVPGKLIYGQ---YCE-------CDTINCERYN-------------GQVCGGPGRG  194 (217)
T ss_dssp             SCBGGGTEEEET----TEEEECCCCSTTCCEEST---TSC-------EESSCSCEET-------------TEETTCTTTE
T ss_pred             CCCCCCCCEEeC----CceECCCCCCCcccEECC---Ccc-------cCCccCCCCC-------------CCCCCCCCCc
Confidence            357888899984    37999999      5776   554       1234454211             1368766  8


Q ss_pred             eeeeCCCceeeeCCCCCccCC
Q psy590          116 VCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       116 ~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      +|+.    ..|.|.+||.|..
T Consensus       195 ~C~~----g~C~C~~G~~G~~  211 (217)
T 2p28_B          195 LCFC----GKCRCHPGFEGSA  211 (217)
T ss_dssp             EEET----TEEEECTTEESTT
T ss_pred             EEeC----CeeECCCCCccCC
Confidence            8974    2799999999983

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.35  E-value=0.0023  Score=57.94  Aligned_cols=72  Identities=26%  Similarity=0.749  Sum_probs=28.2

Q ss_pred             eeccCCCceeeeccccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCC
Q psy590           25 DCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKP  104 (257)
Q Consensus        25 ~C~~~~g~~~C~C~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~  104 (257)
                      .|........|.. ++|.  .+|.+ +.|++.   +.|.|.+||+|.   .|+         +++|.             
T Consensus       380 ~C~~~~~g~~c~~-~~C~--~~C~n-G~C~~~---~~C~C~~G~~G~---~C~---------~~~C~-------------  427 (463)
T 2wg3_C          380 ECRATVQPAQTLT-SECS--RLCRN-GYCTPT---GKCCCSPGWEGD---FCR---------TAKCE-------------  427 (463)
T ss_dssp             GGCCCCCCCCCCC-CHHH--HHCCS-EEECTT---SCEEECTTEEST---TSC---------EECC--------------
T ss_pred             cCCCCCcCCCCcc-cccc--CCCCC-CccCCC---CeECCCCCcCCC---cCC---------cCcCC-------------
Confidence            4544433333432 4565  24876 789753   479999999998   443         23443             


Q ss_pred             CCCCCCCCCCCeeeeCCCceeeeCCCCCccC
Q psy590          105 CAVHSPCAPNAVCINKNHATDCSCLEGFQGN  135 (257)
Q Consensus       105 C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~  135 (257)
                          .+|.++++|++.   +.|.|.+||.|.
T Consensus       428 ----~~C~~~g~C~~~---~~C~C~~G~~G~  451 (463)
T 2wg3_C          428 ----PACRHGGVCVRP---NKCLCKKGYLGP  451 (463)
T ss_dssp             -------------------------------
T ss_pred             ----CCCCCCCEECCC---CEEECCCCcccC
Confidence                378888899864   689999999988

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=95.34  E-value=0.031  Score=51.22  Aligned_cols=62  Identities=16%  Similarity=0.270  Sum_probs=38.0

Q ss_pred             eeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCCCCCCCCCEeccC----CCCeeeecCCCC
Q psy590          124 TDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPK----NHGIDCQCQSGH  199 (257)
Q Consensus       124 ~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~~~C~~~~~C~~~----~g~~~C~C~~G~  199 (257)
                      ..|.|.++|.|.             .|.   .|.+||.+..  +...+.|...+|.+.+.|.+.    ...+.|.|++||
T Consensus       407 ~~C~C~~g~~G~-------------~C~---~C~~Gy~G~~--c~~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~  468 (525)
T 4aqs_A          407 GQCRCKLHVEGE-------------RCD---VCKEGFYDLS--AEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLV  468 (525)
T ss_dssp             SCCCBCTTEETT-------------TTC---EECTTEECCC--TTSTTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTC
T ss_pred             CccCCCCCCCCC-------------ccc---CCCCCCcCCC--CCCCCCCccCCCCCCceecCCCcccCCCCEEECCCCC
Confidence            456666666666             332   4677776643  233445655556655555443    235689999999


Q ss_pred             ccCC
Q psy590          200 QGNP  203 (257)
Q Consensus       200 ~g~~  203 (257)
                      +|..
T Consensus       469 ~G~~  472 (525)
T 4aqs_A          469 TGQR  472 (525)
T ss_dssp             CSTT
T ss_pred             cCCC
Confidence            9987

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=95.28  E-value=0.01  Score=45.78  Aligned_cols=76  Identities=22%  Similarity=0.506  Sum_probs=44.2

Q ss_pred             CCCCCCeeeeCC--Cceee-eCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCc-cCCCCCCCCCCCC----
Q psy590          110 PCAPNAVCINKN--HATDC-SCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRI-CINPCQEDSCGEH----  181 (257)
Q Consensus       110 ~C~~~~~C~~~~--g~~~C-~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~-~id~C~~~~C~~~----  181 (257)
                      +|.++++|+...  +.++| .|.++|+|.             .|+   .|.+||++....-. ....|..=.|.++    
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~-------------~Ce---~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~   65 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGK-------------RCE---LCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPN   65 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEEST-------------TSC---EECTTEEEETTCTTSSCEEEEECCSTTCBCTT
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCC-------------CCc---CCCCCCcCCcccccCCCCCCeeCcCCCCCCcc
Confidence            467778898655  57899 799999999             454   37788876432100 0112222223332    


Q ss_pred             --CEeccCCCCeeee-cCCCCccCC
Q psy590          182 --AICIPKNHGIDCQ-CQSGHQGNP  203 (257)
Q Consensus       182 --~~C~~~~g~~~C~-C~~G~~g~~  203 (257)
                        +.|...  +..|. |+++|+|..
T Consensus        66 ~~~~C~~~--tG~C~~C~~g~~G~~   88 (162)
T 1klo_A           66 AVGNCNRL--TGECLKCIYNTAGFY   88 (162)
T ss_dssp             CSCCBCTT--TCCBCCBCTTEETTT
T ss_pred             cCCcccCC--CCcccCCCCCCcCCC
Confidence              345433  23573 777777665

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.20  E-value=0.0091  Score=46.22  Aligned_cols=42  Identities=24%  Similarity=0.505  Sum_probs=30.9

Q ss_pred             CccCCCCCCCC-----CCCCCEeccCCCCeeeecCCCCccCCC-CCcccC
Q psy590          167 RICINPCQEDS-----CGEHAICIPKNHGIDCQCQSGHQGNPY-IACLSE  210 (257)
Q Consensus       167 ~~~id~C~~~~-----C~~~~~C~~~~g~~~C~C~~G~~g~~~-~~C~~~  210 (257)
                      +.++++|...+     |.+  .|+|+.++|+|.|++||++... .+|.++
T Consensus       121 ~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~  168 (170)
T 1szb_A          121 AEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTCSEQ  168 (170)
T ss_dssp             EEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred             ccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEECCCCCccccc
Confidence            45578897543     764  8999999999999999985432 247654

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=95.14  E-value=0.013  Score=37.06  Aligned_cols=31  Identities=16%  Similarity=0.421  Sum_probs=24.1

Q ss_pred             CEeccCC-CCeeeecCCCCccCC-CCCcccCcc
Q psy590          182 AICIPKN-HGIDCQCQSGHQGNP-YIACLSELI  212 (257)
Q Consensus       182 ~~C~~~~-g~~~C~C~~G~~g~~-~~~C~~~~~  212 (257)
                      ..|+++. |+|.|.|++||.... .++|.++++
T Consensus        11 ~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~   43 (59)
T 2wph_E           11 QFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP   43 (59)
T ss_dssp             SEEEECSTTCEEEECCTTEEECTTSSCEEESSS
T ss_pred             CEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC
Confidence            4899998 699999999998543 245887653

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=95.02  E-value=0.012  Score=52.35  Aligned_cols=84  Identities=19%  Similarity=0.313  Sum_probs=22.7

Q ss_pred             CeeeeCCCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCc---c---CCCCCC--CCCCCCCEecc
Q psy590          115 AVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRI---C---INPCQE--DSCGEHAICIP  186 (257)
Q Consensus       115 ~~C~~~~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~---~---id~C~~--~~C~~~~~C~~  186 (257)
                      ..|....+.+.|.|.+++.|.....|.+.-- ...+.....++ --.+....|.   +   .+.|..  .+|.++++|.+
T Consensus       304 s~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~-~~P~~~gt~~p-~~~g~~~~C~pC~Cn~~g~~CD~~t~~C~ngg~C~~  381 (426)
T 3zyj_B          304 TVCVYDNSKLTCECEHNTTGPDCGKCKKNYQ-GRPWSPGSYLP-IPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHN  381 (426)
T ss_dssp             SCEEEETTEEEECCCTTEESSSSCEECTTCC-SSCCCCCBCCS-SSSCBCCCCCCCCC----------------------
T ss_pred             hhcCCCCCCceeeCCCCCcCCCccccccccc-cCcccCCcccc-cCCCCCCcccCCCCCCCcCccccCcccCCCCCCcCC
Confidence            4688777789999999999986443333100 00000000000 0000000110   0   123432  57888889987


Q ss_pred             CCCCeeeecCCCCccCC
Q psy590          187 KNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       187 ~~g~~~C~C~~G~~g~~  203 (257)
                      ..   +|.|++||+|..
T Consensus       382 ~~---~C~C~~G~~G~~  395 (426)
T 3zyj_B          382 NV---RCLCPAAYTGIL  395 (426)
T ss_dssp             -----------------
T ss_pred             CC---CCcCCCCCcCCC
Confidence            65   899999999987

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=94.91  E-value=0.0093  Score=37.65  Aligned_cols=29  Identities=28%  Similarity=0.713  Sum_probs=23.9

Q ss_pred             CCCCCCEeee----CCCCcEeeCCCCCccCCCCCcc
Q psy590           46 LCAPSAKCHV----VKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        46 ~C~~~~~C~~----~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +|.++++|+.    ..+.|.|.|++||+|.   +|+
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~---~Ce   47 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQ---RCE   47 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESS---SSC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccC---CCc
Confidence            7999999984    3357899999999998   665

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=94.50  E-value=0.034  Score=33.86  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=24.9

Q ss_pred             CCCCCCCEeccC--CCCeeeecCCCCccCCCCCcccCc
Q psy590          176 DSCGEHAICIPK--NHGIDCQCQSGHQGNPYIACLSEL  211 (257)
Q Consensus       176 ~~C~~~~~C~~~--~g~~~C~C~~G~~g~~~~~C~~~~  211 (257)
                      +.|.++ +|...  ...+.|.|++||+|..   |+..|
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~R---Ce~~d   47 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGAR---CEHAD   47 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCcccC---CCcee
Confidence            568875 99753  4678999999999998   76443

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=94.36  E-value=0.038  Score=34.86  Aligned_cols=25  Identities=28%  Similarity=0.755  Sum_probs=20.5

Q ss_pred             CCCCCCCEeeeCC-CCcEeeCCCCCccC
Q psy590           45 SLCAPSAKCHVVK-HRPVCTCPQGYEGN   71 (257)
Q Consensus        45 ~~C~~~~~C~~~~-g~~~C~C~~G~~g~   71 (257)
                      ..|..  .|+++. |+|.|.|++||.+.
T Consensus         7 ggC~~--~C~n~~~gs~~C~C~~Gy~L~   32 (59)
T 2wph_E            7 GRCEQ--FCKNSADNKVVCSCTEGYRLA   32 (59)
T ss_dssp             GGCSS--EEEECSTTCEEEECCTTEEEC
T ss_pred             CCcCC--EeEeCCCCCEEeeCCCCcEEC
Confidence            45653  699998 69999999999876

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=94.22  E-value=0.022  Score=50.52  Aligned_cols=21  Identities=19%  Similarity=0.526  Sum_probs=17.0

Q ss_pred             CEeeeCCCCcEeeCCCCCccC
Q psy590           51 AKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        51 ~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      ..|....+.+.|.|..++.|.
T Consensus       304 s~C~~~~g~~~C~C~~~ttG~  324 (426)
T 3zyj_B          304 TVCVYDNSKLTCECEHNTTGP  324 (426)
T ss_dssp             SCEEEETTEEEECCCTTEESS
T ss_pred             hhcCCCCCCceeeCCCCCcCC
Confidence            467777777889999999888

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=94.11  E-value=0.026  Score=52.12  Aligned_cols=36  Identities=28%  Similarity=0.681  Sum_probs=30.3

Q ss_pred             ccCCcCCCCCCCCEeee-CCCCcEeeCC-CCCccCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHV-VKHRPVCTCP-QGYEGNPATKCYL   78 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~-~~g~~~C~C~-~G~~g~~~~~C~~   78 (257)
                      |+|. .++|.++++|++ ..++|.|.|. +||+|.   .|+.
T Consensus         3 d~C~-~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~---~Ce~   40 (553)
T 1q4g_A            3 NPCC-YYPCQHQGICVRFGLDRYQCDCTRTGYSGP---NCTI   40 (553)
T ss_dssp             CGGG-GCCCCTTCEEEEETTTEEEEECTTSSEETT---TTCE
T ss_pred             CcCC-CCCCCCCCCcCCCCCCceEeeCCCCCcCCC---CCCC
Confidence            6777 788988899988 7788999999 999998   6763

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=93.58  E-value=0.075  Score=38.80  Aligned_cols=27  Identities=22%  Similarity=0.620  Sum_probs=22.4

Q ss_pred             CCCCCCEeccCC--CCe-eeecCCCCccCC
Q psy590          177 SCGEHAICIPKN--HGI-DCQCQSGHQGNP  203 (257)
Q Consensus       177 ~C~~~~~C~~~~--g~~-~C~C~~G~~g~~  203 (257)
                      ||.++++|++..  .+| +|.|++||+|..
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~   31 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQH   31 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTT
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCcc
Confidence            588899998874  455 999999999876

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=93.14  E-value=0.052  Score=50.35  Aligned_cols=36  Identities=22%  Similarity=0.666  Sum_probs=30.1

Q ss_pred             ccCCcCCCCCCCCEeee-CCCCcEeeCC-CCCccCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHV-VKHRPVCTCP-QGYEGNPATKCYL   78 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~-~~g~~~C~C~-~G~~g~~~~~C~~   78 (257)
                      |+|. .++|.++++|++ ..++|.|.|. +||+|.   .|+.
T Consensus         2 d~C~-s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~---~Ce~   39 (587)
T 3nt1_A            2 NPCC-SNPCQNRGECMSTGFDQYKCDCTRTGFYGE---NCTT   39 (587)
T ss_dssp             CTTT-TCCCCTTCEEEEEETTEEEEECTTSSEETT---TTCE
T ss_pred             CCCC-CCCCCCCCEeeCCCCCCeEEecCCCCccCC---CCCC
Confidence            6787 789999999995 4478999999 999998   6663

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=93.09  E-value=0.037  Score=37.03  Aligned_cols=33  Identities=27%  Similarity=0.598  Sum_probs=24.2

Q ss_pred             CCCCC---CCCCCCCCEeccC--CCCeeeecCCCCccCC
Q psy590          170 INPCQ---EDSCGEHAICIPK--NHGIDCQCQSGHQGNP  203 (257)
Q Consensus       170 id~C~---~~~C~~~~~C~~~--~g~~~C~C~~G~~g~~  203 (257)
                      .++|.   .+.|.++ +|+..  .+.+.|.|.+||+|..
T Consensus        37 ~~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~R   74 (79)
T 1xdt_R           37 RDPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGER   74 (79)
T ss_dssp             --CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTT
T ss_pred             CCCCCccccCcCCCC-EeeeecCCCCeEEEcCCCccccc
Confidence            45676   4678875 89533  4678999999999998

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=92.53  E-value=0.032  Score=42.16  Aligned_cols=34  Identities=26%  Similarity=0.752  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      +++|..++|.+++.|.+....|.|.|.+||+|+.
T Consensus       119 ~~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~  152 (157)
T 1g1t_A          119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLK  152 (157)
T ss_dssp             ECCCCTTGGGGSEEEEEETTEEEEEECTTEESTT
T ss_pred             cCCCCCCCCCCCCEeecCCCCeeEECCCCccCcc
Confidence            4667778898889999999999999999999987

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=92.43  E-value=0.18  Score=30.61  Aligned_cols=33  Identities=27%  Similarity=0.657  Sum_probs=25.2

Q ss_pred             CCCCCC---CCCCCCCEec--cCCCCeeeecCCCCccCC
Q psy590          170 INPCQE---DSCGEHAICI--PKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       170 id~C~~---~~C~~~~~C~--~~~g~~~C~C~~G~~g~~  203 (257)
                      .++|..   +.|.+ ++|.  ...+.+.|.|+.||+|+.
T Consensus         9 ~~~C~~~~~~yC~n-G~C~~i~~~~~~~C~C~~gy~G~R   46 (50)
T 2rnl_A            9 KNPCNAEFQNFCIH-GECKYIEHLEAVTCKCQQEYFGER   46 (50)
T ss_dssp             CCTTTTTGGGTCSS-SEEEEETTTTEEEEECCSSCCSSS
T ss_pred             CcccCchhhCcCCC-CEEEEecCCCCeeEECCCCccccc
Confidence            456653   56886 5997  445678999999999997

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=92.28  E-value=0.064  Score=32.61  Aligned_cols=29  Identities=24%  Similarity=0.573  Sum_probs=23.3

Q ss_pred             CCCCCCCEec--cCCCCeeeecCCCCccCCCCCcc
Q psy590          176 DSCGEHAICI--PKNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       176 ~~C~~~~~C~--~~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      +.|.+ ++|.  ...+.+.|+|++||+|..   |+
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~R---Ce   44 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGAR---CE   44 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEECCCTTEETTT---TC
T ss_pred             CcccC-CEEEeEcCCCCeEEECCCCcccCC---CC
Confidence            56887 7895  445678999999999998   75

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=91.94  E-value=0.093  Score=43.85  Aligned_cols=45  Identities=24%  Similarity=0.722  Sum_probs=33.3

Q ss_pred             CCCCCCC---CCCCCCEeccCCCCeeeecCCCCccCC-CCCcccCccccCC
Q psy590          170 INPCQED---SCGEHAICIPKNHGIDCQCQSGHQGNP-YIACLSELICLCH  216 (257)
Q Consensus       170 id~C~~~---~C~~~~~C~~~~g~~~C~C~~G~~g~~-~~~C~~~~~C~~~  216 (257)
                      .|||..+   .|.  ..|.++.++|+|.|..||.... ..+|.+.++|.-+
T Consensus         2 ~~eC~~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~CG   50 (283)
T 3f1s_B            2 KNECHPERTDGCQ--HFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG   50 (283)
T ss_dssp             -CCCCSSCSSSCS--SBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTCTT
T ss_pred             CCccCCCCCCCCC--CEeeCCCCCeEecCCCCcccCCCCCccccccccccC
Confidence            5778643   454  5899999999999999998643 3469988887544

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=91.63  E-value=0.12  Score=45.58  Aligned_cols=37  Identities=32%  Similarity=0.875  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCCCCEeccCCCCeeeecCC-CCccCCCCCccc
Q psy590          170 INPCQEDSCGEHAICIPKNHGIDCQCQS-GHQGNPYIACLS  209 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~~~g~~~C~C~~-G~~g~~~~~C~~  209 (257)
                      .+.|..++|.++++|+....+|.|.|+. ||.|..   |.+
T Consensus       185 ~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~---C~~  222 (410)
T 3asi_A          185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL---CND  222 (410)
T ss_dssp             SSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTT---SCE
T ss_pred             CCCcccccCCCCCEecCCCCCceEeccCCcccCCC---CCC
Confidence            4789889999999999999999999996 999987   763

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=91.34  E-value=0.14  Score=38.72  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=27.2

Q ss_pred             CccCCCCCC---CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          167 RICINPCQE---DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       167 ~~~id~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      +.++|+|..   ..|.  ..|.+..++|+|.|++||++..
T Consensus       114 ~~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~  151 (159)
T 1nzi_A          114 ATDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHD  151 (159)
T ss_dssp             EEECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECT
T ss_pred             cccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcEECC
Confidence            345788864   3464  5899999999999999999543

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=90.64  E-value=0.16  Score=38.62  Aligned_cols=32  Identities=25%  Similarity=0.646  Sum_probs=28.2

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      ..|. ..+|..++.|.+..++|.|.|.+||.|.
T Consensus       120 ~~~~-~~~C~~~g~C~~~~~~~~c~C~~g~~g~  151 (164)
T 3cfw_A          120 ASCQ-PWSCSGHGECVEIINNYTCNCDVGYYGP  151 (164)
T ss_dssp             CCCC-TTSSCSSEEEEEETTEEEEEECTTCBSS
T ss_pred             CCCC-CCcCCCCCeecccCCCceeeeCCCcccc
Confidence            4455 6889989999999999999999999998

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=90.38  E-value=0.22  Score=36.30  Aligned_cols=29  Identities=28%  Similarity=0.728  Sum_probs=23.8

Q ss_pred             CCCCCCEeeeCC--CCc-EeeCCCCCccCCCCCcc
Q psy590           46 LCAPSAKCHVVK--HRP-VCTCPQGYEGNPATKCY   77 (257)
Q Consensus        46 ~C~~~~~C~~~~--g~~-~C~C~~G~~g~~~~~C~   77 (257)
                      +|.++++|++..  .+| .|.|++||+|.   .|+
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~---~Ce   33 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQ---HCE   33 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEEST---TSC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCc---ccc
Confidence            688899998874  555 89999999998   665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=89.63  E-value=0.15  Score=43.78  Aligned_cols=40  Identities=25%  Similarity=0.597  Sum_probs=22.4

Q ss_pred             CCCCCC-CCCCCCCEeccCCCCeeeecCCCCccCC-CCCcccCc
Q psy590          170 INPCQE-DSCGEHAICIPKNHGIDCQCQSGHQGNP-YIACLSEL  211 (257)
Q Consensus       170 id~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~g~~-~~~C~~~~  211 (257)
                      +|||.. ..|.  ..|+|+.++|+|.|++||.... ..+|...+
T Consensus         1 i~ec~~~~~C~--~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~   42 (349)
T 3v64_C            1 VNECAEEGYCS--QGCTNSEGAFQCWCEAGYELRPDRRSCKALG   42 (349)
T ss_dssp             --------CCS--SEECCC---CCEECCTTEEECTTSSCEEESS
T ss_pred             CcccCCCCCCc--CeeecCCCCeEEECCCCccCCCCCCcccccc
Confidence            356652 3465  4899999999999999998543 23587554

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=88.87  E-value=0.45  Score=28.81  Aligned_cols=30  Identities=30%  Similarity=0.965  Sum_probs=23.3

Q ss_pred             CCCCCCCCEeeeCC--CCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCHVVK--HRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .+.|.++ .|....  +.+.|.|.+||+|.   +|+
T Consensus        13 ~~yC~nG-~C~~~~~~~~~~C~C~~gy~G~---RCe   44 (50)
T 3e50_C           13 TQFCFHG-TCRFLVQEDKPACVCHSGYVGA---RCE   44 (50)
T ss_pred             cCcccCC-EEeeccCCCCeEEECCCCCccc---CCC
Confidence            4677775 897543  67899999999998   665

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=88.83  E-value=0.12  Score=38.82  Aligned_cols=35  Identities=26%  Similarity=0.722  Sum_probs=30.4

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCcc
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      ++|. ..+|.+++.|.+..+.|.|.|.+||.|.   .|+
T Consensus       120 ~~~~-~~pc~~~g~C~~~~~~~~c~C~~g~~g~---~Ce  154 (157)
T 1g1t_A          120 AACT-NTSCSGHGECVETINNYTCKCDPGFSGL---KCE  154 (157)
T ss_dssp             CCCC-TTGGGGSEEEEEETTEEEEEECTTEEST---TSC
T ss_pred             CCCC-CCCCCCCCEeecCCCCeeEECCCCccCc---ccc
Confidence            5566 6789888999999999999999999998   665

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=87.43  E-value=0.3  Score=29.59  Aligned_cols=30  Identities=30%  Similarity=0.969  Sum_probs=22.8

Q ss_pred             CCCCCCCCEeee--CCCCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCHV--VKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~~--~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .+.|.+ ++|..  ..+.+.|.|.+||+|.   +|+
T Consensus        13 ~~yC~n-G~C~~~~~~~~~~C~C~~gy~G~---RCe   44 (50)
T 1iox_A           13 KHYCIK-GRCRFVVAEQTPSCVCDEGYIGA---RCE   44 (50)
T ss_dssp             TTSCTT-CCEEEETTTTEEEECCCTTEETT---TTC
T ss_pred             cCcccC-CEEEeEcCCCCeEEECCCCcccC---CCC
Confidence            467777 68863  3356889999999998   666

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=87.25  E-value=0.58  Score=35.10  Aligned_cols=37  Identities=22%  Similarity=0.551  Sum_probs=27.0

Q ss_pred             CCCCCCEeccC--CCCe-eeecCCCCccCCCCCcc-cCc-cccCC
Q psy590          177 SCGEHAICIPK--NHGI-DCQCQSGHQGNPYIACL-SEL-ICLCH  216 (257)
Q Consensus       177 ~C~~~~~C~~~--~g~~-~C~C~~G~~g~~~~~C~-~~~-~C~~~  216 (257)
                      +|.++++|+..  ...| .|.|++||.|..   |+ +++ +|..+
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~---Cei~~~~~C~~g   55 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQH---CEIDKSKTCYEG   55 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTT---SCEESSCCEECT
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCc---eeccccccCCCC
Confidence            79999999876  3456 899999999976   64 332 46543

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=87.17  E-value=0.54  Score=28.45  Aligned_cols=29  Identities=28%  Similarity=0.811  Sum_probs=21.9

Q ss_pred             CCCCCCCEeeeC--CCCcEeeCCCCCccCCCCCcc
Q psy590           45 SLCAPSAKCHVV--KHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        45 ~~C~~~~~C~~~--~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +.|.+ ++|...  .+.+.|.|..||+|.   +|+
T Consensus        18 ~yC~n-G~C~~i~~~~~~~C~C~~gy~G~---RCe   48 (50)
T 2rnl_A           18 NFCIH-GECKYIEHLEAVTCKCQQEYFGE---RCG   48 (50)
T ss_dssp             GTCSS-SEEEEETTTTEEEEECCSSCCSS---SCC
T ss_pred             CcCCC-CEEEEecCCCCeeEECCCCcccc---ccc
Confidence            56776 589743  356889999999998   665

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=87.09  E-value=0.37  Score=36.86  Aligned_cols=35  Identities=26%  Similarity=0.565  Sum_probs=26.6

Q ss_pred             eeccccCCc-CC---CCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           35 GQCEDLCAI-AS---LCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        35 C~C~~~C~~-~~---~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      +.=+++|.. ..   +|.+  .|+++.|+|.|.|.+||++.
T Consensus       121 ~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~  159 (170)
T 1szb_A          121 AEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLH  159 (170)
T ss_dssp             EEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEEC
T ss_pred             ccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEEC
Confidence            333578873 22   2765  79999999999999999865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=86.47  E-value=0.27  Score=42.21  Aligned_cols=31  Identities=29%  Similarity=0.612  Sum_probs=16.7

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      |||+....|..  .|.|+.|+|.|.|.+||...
T Consensus         2 ~ec~~~~~C~~--~C~n~~g~~~C~C~~g~~l~   32 (349)
T 3v64_C            2 NECAEEGYCSQ--GCTNSEGAFQCWCEAGYELR   32 (349)
T ss_dssp             -------CCSS--EECCC---CCEECCTTEEEC
T ss_pred             cccCCCCCCcC--eeecCCCCeEEECCCCccCC
Confidence            56653456764  68888888999999998765

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=86.43  E-value=0.28  Score=32.72  Aligned_cols=35  Identities=34%  Similarity=0.948  Sum_probs=24.3

Q ss_pred             ccCC--cCCCCCCCCEeeeC--CCCcEeeCCCCCccCCCCCcc
Q psy590           39 DLCA--IASLCAPSAKCHVV--KHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~--~~~~C~~~~~C~~~--~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      ++|.  ..+.|.++ .|...  .+.+.|.|.+||+|.   +|+
T Consensus        38 ~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~---RCE   76 (79)
T 1xdt_R           38 DPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGE---RCH   76 (79)
T ss_dssp             -CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEEST---TCC
T ss_pred             CCCCccccCcCCCC-EeeeecCCCCeEEEcCCCcccc---ccc
Confidence            4454  14678775 89533  357889999999998   654

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=86.42  E-value=1.6  Score=29.92  Aligned_cols=69  Identities=19%  Similarity=0.406  Sum_probs=48.4

Q ss_pred             CCCCCCCCEeeeCC-CCcEeeCCCCCccCCCCCccCCCCCCCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCC-
Q psy590           44 ASLCAPSAKCHVVK-HRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN-  121 (257)
Q Consensus        44 ~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~-  121 (257)
                      ...|..++.|.... +.-.|+|..+|.-.+. .|.+....      .|....              ..|..++.|.... 
T Consensus         9 ~tkcp~NA~Cyr~~dg~EecRCllnykk~~~-kCV~~~~~------~C~~NN--------------GGCd~nA~C~~~~~   67 (95)
T 1b9w_A            9 DTNVPENAACYRYLDGTEEWRCLLYFKEDAG-KCVPAPNM------TCKDKN--------------GGCAPEAECKMNDK   67 (95)
T ss_dssp             SCCCCTTEEEEECTTSCEEEEECTTEEEETT-EEEECTTC------CTTTGG--------------GGSCTTSEEEECTT
T ss_pred             cCCCCCCcCeEEEcCCCEEEEEECCeEecCC-EEEcCCCC------CccccC--------------CCcCCCcceeecCC
Confidence            34677889998865 6788999999976532 44432222      344332              6788899998776 


Q ss_pred             CceeeeCCCCCc
Q psy590          122 HATDCSCLEGFQ  133 (257)
Q Consensus       122 g~~~C~C~~g~~  133 (257)
                      ....|.|...+.
T Consensus        68 ~kIvC~C~~~~~   79 (95)
T 1b9w_A           68 NEIVCKCTKEGS   79 (95)
T ss_dssp             SCEEEECCSTTE
T ss_pred             CcEEEECCCCCC
Confidence            688999987754

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=83.89  E-value=0.8  Score=40.19  Aligned_cols=32  Identities=19%  Similarity=0.528  Sum_probs=25.5

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCC-CCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQ-GYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~-G~~g~   71 (257)
                      +.|. ..+|.+++.|++..+.|.|.|.. ||.|.
T Consensus       186 ~~C~-~~pC~n~g~C~~~~~~~~C~C~~~~~~G~  218 (410)
T 3asi_A          186 TTCQ-EDSCSNQGVCLQQWDGFSCDCSMTSFSGP  218 (410)
T ss_dssp             SCCC-TTSSSTTCEEEECSSSEEEECTTTSEEST
T ss_pred             CCcc-cccCCCCCEecCCCCCceEeccCCcccCC
Confidence            5676 67888888888887888888885 88876

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=83.82  E-value=2.7  Score=28.71  Aligned_cols=66  Identities=23%  Similarity=0.545  Sum_probs=46.6

Q ss_pred             CCCCCCCeeeeC-CCceeeeCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCccCCCCCC--CCCCCCCEec
Q psy590          109 SPCAPNAVCINK-NHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQE--DSCGEHAICI  185 (257)
Q Consensus       109 ~~C~~~~~C~~~-~g~~~C~C~~g~~g~~~~~C~~~~~~~~~C~~~~~C~~g~~~~~~~~~~id~C~~--~~C~~~~~C~  185 (257)
                      ..|..++.|... .+.-.|+|..+|.-.+.. |...+                         ...|..  .-|...|.|.
T Consensus        10 tkcp~NA~Cyr~~dg~EecRCllnykk~~~k-CV~~~-------------------------~~~C~~NNGGCd~nA~C~   63 (95)
T 1b9w_A           10 TNVPENAACYRYLDGTEEWRCLLYFKEDAGK-CVPAP-------------------------NMTCKDKNGGCAPEAECK   63 (95)
T ss_dssp             CCCCTTEEEEECTTSCEEEEECTTEEEETTE-EEECT-------------------------TCCTTTGGGGSCTTSEEE
T ss_pred             CCCCCCcCeEEEcCCCEEEEEECCeEecCCE-EEcCC-------------------------CCCccccCCCcCCCccee
Confidence            467888999975 468889999999754322 33311                         224554  3488889998


Q ss_pred             cCC-CCeeeecCCCCc
Q psy590          186 PKN-HGIDCQCQSGHQ  200 (257)
Q Consensus       186 ~~~-g~~~C~C~~G~~  200 (257)
                      ... ....|.|...+.
T Consensus        64 ~~~~~kIvC~C~~~~~   79 (95)
T 1b9w_A           64 MNDKNEIVCKCTKEGS   79 (95)
T ss_dssp             ECTTSCEEEECCSTTE
T ss_pred             ecCCCcEEEECCCCCC
Confidence            877 788999988753

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=83.36  E-value=0.71  Score=46.68  Aligned_cols=36  Identities=33%  Similarity=0.943  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCCEeccCCCCeeeecC-CCCccCCCCCccc
Q psy590          171 NPCQEDSCGEHAICIPKNHGIDCQCQ-SGHQGNPYIACLS  209 (257)
Q Consensus       171 d~C~~~~C~~~~~C~~~~g~~~C~C~-~G~~g~~~~~C~~  209 (257)
                      +.|..++|.++++|+....+|.|.|+ +||.|..   |..
T Consensus      1018 ~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~---C~~ 1054 (1245)
T 3qcw_A         1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL---CND 1054 (1245)
T ss_dssp             CCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTT---SCB
T ss_pred             CceECCcCCCCCEeCCCCCCCEEECCCCCCCCCC---ccC
Confidence            67888999999999999999999999 6999987   753

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=82.45  E-value=0.63  Score=38.70  Aligned_cols=31  Identities=26%  Similarity=0.564  Sum_probs=24.2

Q ss_pred             ccCC-c-CCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCA-I-ASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~-~-~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      |||. . .+.|.+  .|.++.++|.|.|..||...
T Consensus         3 ~eC~~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~   35 (283)
T 3f1s_B            3 NECHPERTDGCQH--FCLPGQESYTCSCAQGYRLG   35 (283)
T ss_dssp             CCCCSSCSSSCSS--BCCCCTTSCCCBCCTTEEEC
T ss_pred             CccCCCCCCCCCC--EeeCCCCCeEecCCCCcccC
Confidence            6776 2 467764  58889999999999999765

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=81.72  E-value=1.1  Score=34.98  Aligned_cols=27  Identities=33%  Similarity=1.014  Sum_probs=22.4

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCccCCCCCcc
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      ..|.++|.|+   +...|.|++||.|.   .|+
T Consensus       153 ~~C~ngG~Cv---~P~~C~C~~Gw~G~---~C~  179 (188)
T 2ygo_A          153 GGCRNGGFCN---ERRICECPDGFHGP---HCE  179 (188)
T ss_dssp             TCCCTTCEEC---TTSCEECCTTCBTT---TTC
T ss_pred             CCCCCCCEeC---CCCcccCcCCCCCC---CCc
Confidence            6888999997   34579999999998   565

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=80.30  E-value=1.3  Score=34.67  Aligned_cols=25  Identities=28%  Similarity=0.767  Sum_probs=20.8

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      .+|.++|.|+.   ...|.|+.||.|..
T Consensus       153 ~~C~ngG~Cv~---P~~C~C~~Gw~G~~  177 (188)
T 2ygo_A          153 GGCRNGGFCNE---RRICECPDGFHGPH  177 (188)
T ss_dssp             TCCCTTCEECT---TSCEECCTTCBTTT
T ss_pred             CCCCCCCEeCC---CCcccCcCCCCCCC
Confidence            68999999974   34799999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.8
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.77
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.73
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.71
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.57
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.52
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.4
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.38
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.34
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	98.3
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.28
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.27
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.27
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.24
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.21
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.18
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.11
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.09
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.03
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.01
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.99
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.92
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.92
d1szba2	45	Mannose-binding protein associated serine protease	97.86
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.86
d1nt0a3	45	Mannose-binding protein associated serine protease	97.84
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.79
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.78
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.78
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.76
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.73
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.69
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.62
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.6
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.59
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.51
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.48
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.46
d1szba2	45	Mannose-binding protein associated serine protease	97.3
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.26
d1nt0a3	45	Mannose-binding protein associated serine protease	97.23
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.23
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.19
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.91
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.88
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	96.82
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.74
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	96.7
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	96.4
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	96.11
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	95.83
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	95.59
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	95.58
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	95.34
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	95.27
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	94.83
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	94.73
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	94.31
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	92.74
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	92.49
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	91.6
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	91.41
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	91.19
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	90.77
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	90.5
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	90.4
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	89.5
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	88.0
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	87.51
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	83.4

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.4e-10  Score=65.63  Aligned_cols=42  Identities=21%  Similarity=0.526  Sum_probs=35.0

Q ss_pred             CccCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCCCCCccc
Q psy590          167 RICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLS  209 (257)
Q Consensus       167 ~~~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~  209 (257)
                      |+|||||+..++..++.|+|+.|+|.|.|++||++++.. |+|
T Consensus         2 CvDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~-C~D   43 (43)
T d1emoa1           2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE-CVD   43 (43)
T ss_dssp             CCCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEESSSC-EEE
T ss_pred             CcceeccCCcCCCCCCEeECCCCCeEeECCCCcccCCCc-ccC
Confidence            567999987666667899999999999999999987654 653

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.8e-09  Score=61.94  Aligned_cols=35  Identities=20%  Similarity=0.549  Sum_probs=33.4

Q ss_pred             cCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |+|+|.++||.++++|++..++|+|.|++||+|..
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~   36 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKN   36 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTT
T ss_pred             ccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCC
Confidence            58999999999999999999999999999999986

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.7e-09  Score=62.37  Aligned_cols=35  Identities=26%  Similarity=0.691  Sum_probs=32.4

Q ss_pred             cCCCCC--CCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQ--EDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |||+|+  +++|.++++|+++.++|+|.|++||+|..
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~   38 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPR   38 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTT
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCC
Confidence            589997  47999999999999999999999999986

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.73  E-value=1.5e-09  Score=61.49  Aligned_cols=35  Identities=17%  Similarity=0.449  Sum_probs=33.1

Q ss_pred             cCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |+|+|.++||.++++|++..++|.|.|++||+|..
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~   35 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRN   35 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTT
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCC
Confidence            48999999999999999999999999999999986

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.2e-09  Score=59.82  Aligned_cols=34  Identities=26%  Similarity=0.732  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      ||+|.++||.++++|++..++|+|.|++||+|..
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~   34 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVH   34 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSS
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCc
Confidence            6899999999999999999999999999999987

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.4e-08  Score=55.66  Aligned_cols=33  Identities=24%  Similarity=0.760  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       171 d~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |+|.++||.++++|++..++|+|.|++||+|..
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~   33 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHL   33 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSS
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCC
Confidence            678899999999999999999999999999986

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3e-08  Score=56.56  Aligned_cols=33  Identities=21%  Similarity=0.657  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       171 d~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |+|.++||.++++|++..++|.|.|++||+|..
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~   33 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN   33 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTEETTT
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCc
Confidence            678899999999999999999999999999987

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.4e-07  Score=54.77  Aligned_cols=34  Identities=35%  Similarity=0.641  Sum_probs=30.6

Q ss_pred             cccCC-cCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           38 EDLCA-IASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        38 ~~~C~-~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      +|+|+ ..++|.++++|+++.++|.|.|++||+|.
T Consensus         3 ideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~   37 (42)
T d2vj3a1           3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP   37 (42)
T ss_dssp             CCTTTSSSCSSSTTCEEEECSSSEEEECCTTEEST
T ss_pred             CccccCCCCCCCCCcEeECCCCCEEeECCCCCcCC
Confidence            46787 46899999999999999999999999998

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.7e-07  Score=53.30  Aligned_cols=36  Identities=31%  Similarity=0.654  Sum_probs=32.3

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCcc
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +|+|. .+||.++++|++..++|.|.|++||+|.   +|+
T Consensus         1 Id~C~-~~PC~n~g~C~~~~~~y~C~C~~G~~G~---~Ce   36 (39)
T d2vj3a2           1 VNECV-SNPCQNDATCLDQIGEFQCICMPGYEGV---HCE   36 (39)
T ss_dssp             CCTTT-TCCCCSSCEEEECSSCEEEECCTTEESS---SSC
T ss_pred             CcCCc-CCCCCCCCEEECCCCCEEEeCCCCCccC---cCe
Confidence            47888 8899999999999999999999999998   665

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=8.8e-08  Score=55.97  Aligned_cols=35  Identities=20%  Similarity=0.469  Sum_probs=28.3

Q ss_pred             cCCCCCCCCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |||||+......++.|+|+.|+|+|.|++||+++.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~   36 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP   36 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECT
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEECC
Confidence            58999764322458999999999999999998764

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.1e-08  Score=55.35  Aligned_cols=37  Identities=27%  Similarity=0.671  Sum_probs=33.1

Q ss_pred             CCCCCCCCCCCCEeccCCCCeeeecCCCCccCCCCCcccC
Q psy590          171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSE  210 (257)
Q Consensus       171 d~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~  210 (257)
                      +.|.++||.++++|++..++|+|.|++||+|..   |+.+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~---Ce~~   38 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPE---CEYV   38 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTT---SCEE
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCccCCC---CCCC
Confidence            468889999999999999999999999999987   7644

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1e-07  Score=54.52  Aligned_cols=33  Identities=30%  Similarity=0.689  Sum_probs=28.9

Q ss_pred             CCCCCCCEeccCCCCeeeecCCCCccCCCCCccc
Q psy590          176 DSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLS  209 (257)
Q Consensus       176 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~  209 (257)
                      +.|+.+++|+|+.|+|.|+|++||+|++.. |.+
T Consensus         7 ~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~~-C~~   39 (40)
T d1gl4a2           7 HQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVA   39 (40)
T ss_dssp             GGSCTTEEEEECSSCEEEEECTTEEECSSS-EEE
T ss_pred             CCCCCCCEeecCCCCeEeECCCCCcCCCCE-eeC
Confidence            458888999999999999999999999865 653

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-07  Score=55.51  Aligned_cols=34  Identities=26%  Similarity=0.752  Sum_probs=28.9

Q ss_pred             cCCCCCC--CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |||||+.  ..|. +++|+|+.|+|+|.|++||+++.
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEECT
T ss_pred             cccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccCC
Confidence            5999975  4575 57999999999999999999864

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.5e-08  Score=55.18  Aligned_cols=35  Identities=29%  Similarity=0.819  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCCEeccCCCCeeeecCCCCccCCCCCcc
Q psy590          171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       171 d~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      +.|.++||.++++|++..++|+|.|++||+|..   |+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~---Ce   36 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLK---CE   36 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTT---SC
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcC---cC
Confidence            568889999999999999999999999999987   65

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.2e-07  Score=50.41  Aligned_cols=32  Identities=34%  Similarity=0.825  Sum_probs=28.6

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      |+|. .++|.++++|++..++|+|.|++||.|.
T Consensus         1 d~C~-~~PC~ngg~C~~~~~~y~C~C~~g~~G~   32 (35)
T d2vj3a3           1 DECA-SSPCLHNGRCLDKINEFQCECPTGFTGH   32 (35)
T ss_dssp             CTTT-TCCSTTTCEEEECSSCEEEECCTTEESS
T ss_pred             CCCC-CCCCCCCcEEECCCCCeEEECCCCCCCC
Confidence            5777 7899999999998899999999999987

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.7e-07  Score=51.92  Aligned_cols=32  Identities=31%  Similarity=0.751  Sum_probs=28.7

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      |+|. +++|.++++|++..++|.|.|++||+|.
T Consensus         4 d~C~-~~PC~ngg~C~~~~~~y~C~C~~g~~G~   35 (39)
T d1edmb_           4 DQCE-SNPCLNGGSCKDDINSYECWCPFGFEGK   35 (39)
T ss_dssp             CTTT-TCCCCTTCEEEEETTEEEEECCTTCCST
T ss_pred             ccCC-CCCCCCCcEEEcCCCCEEEECCCCCCCC
Confidence            6787 7889999999998899999999999998

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.24  E-value=3.1e-07  Score=51.58  Aligned_cols=33  Identities=30%  Similarity=0.703  Sum_probs=29.5

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      +|+|. .++|.++++|++..++|.|.|++||+|.
T Consensus         2 ~d~C~-~~PC~ngg~C~~~~~~y~C~C~~g~~G~   34 (37)
T d2c4fl1           2 GDQCA-SSPCQNGGSCKDQLQSYICFCLPAFEGR   34 (37)
T ss_dssp             CCGGG-GCCCCTTCEEEEETTEEEEECCTTEEST
T ss_pred             cccCC-CCCCCCCCEEECCCCCeEEECCCCCcCC
Confidence            36787 8899999999999999999999999997

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.4e-07  Score=51.54  Aligned_cols=35  Identities=37%  Similarity=0.822  Sum_probs=30.7

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCcc
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      |+|. .+||.++++|++..++|.|.|++||+|.   +|+
T Consensus         1 D~C~-~~PC~ngg~C~~~~~~y~C~C~~G~~G~---~Ce   35 (39)
T d1xkba1           1 DQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGK---NCE   35 (39)
T ss_dssp             CTTT-TCCCCSSCEECCCSSSCCEECCTTEETT---TTC
T ss_pred             CcCC-CCCCCCCcEEECCCCCEEEECCCCCCcC---cCe
Confidence            5787 7899999999999899999999999998   665

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.6e-07  Score=53.17  Aligned_cols=38  Identities=26%  Similarity=0.593  Sum_probs=30.4

Q ss_pred             CCCcCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590           83 GCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus        83 ~C~~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      +|+|+|||...                .+..++.|+|++|+|.|.|++||.+.+
T Consensus         1 sCvDidEC~~~----------------~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g   38 (43)
T d1emoa1           1 SAVDMDECKEP----------------DVCKHGQCINTDGSYRCECPFGYILAG   38 (43)
T ss_dssp             CCCCCCSSSST----------------TSCSSSCCCCCSSCCCCCCCTTEEESS
T ss_pred             CCcceeccCCc----------------CCCCCCEeECCCCCeEeECCCCcccCC
Confidence            37899999753                233357899999999999999998764

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.1e-07  Score=54.04  Aligned_cols=35  Identities=34%  Similarity=0.872  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCCEeccCCCCeeeecCCCCccCCCCCcc
Q psy590          170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      .++|.++||.+ ++|++..++|+|.|++||+|..   |+
T Consensus         8 ~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~---Ce   42 (48)
T d1autl1           8 EHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRF---CQ   42 (48)
T ss_dssp             CCSSSSTTTTS-EEECCCSSCCCEEECTTEESTT---SC
T ss_pred             CCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCC---cc
Confidence            68999999987 8999999999999999999987   75

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.4e-06  Score=49.99  Aligned_cols=33  Identities=30%  Similarity=0.732  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCEeccC--CCCeeeecCCCCccCCCCCcc
Q psy590          173 CQEDSCGEHAICIPK--NHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       173 C~~~~C~~~~~C~~~--~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      |.++||.++++|+..  .++|+|.|++||+|..   |+
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~---Ce   35 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKS---CE   35 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSS---CC
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCC---cC
Confidence            567899999999875  4679999999999997   75

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.7e-07  Score=53.73  Aligned_cols=34  Identities=32%  Similarity=0.644  Sum_probs=28.2

Q ss_pred             cCCCCCC--CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |||||+.  +.|. ++.|+|+.|+|+|.|++||+...
T Consensus         2 DinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l~~   37 (43)
T d1uzka2           2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNE   37 (43)
T ss_dssp             ECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCBCT
T ss_pred             CcccccCCCCCcC-CCEEECCCCCeEeECCCCCeECc
Confidence            5899974  4565 47999999999999999998764

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.2e-07  Score=53.84  Aligned_cols=34  Identities=32%  Similarity=0.739  Sum_probs=27.9

Q ss_pred             cCCCCCC--CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQE--DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |||||+.  ..|. ++.|+|+.|+|+|.|++||+...
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l~~   36 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSP   36 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCCCS
T ss_pred             CccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeECc
Confidence            4788864  4575 57999999999999999998654

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.1e-06  Score=53.65  Aligned_cols=36  Identities=19%  Similarity=0.435  Sum_probs=27.1

Q ss_pred             ccCCCCCC--CCC------CCCCEeccCCCCeeeecCCCCccCC
Q psy590          168 ICINPCQE--DSC------GEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       168 ~~id~C~~--~~C------~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      +|||||..  +.|      .....|+|+.|+|+|.|++||+++.
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~   45 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECT
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECC
Confidence            35888864  223      3345899999999999999999654

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.03  E-value=7.7e-07  Score=51.43  Aligned_cols=34  Identities=29%  Similarity=0.737  Sum_probs=30.5

Q ss_pred             CCCCCCCCCCCCCEeccC-CCCeeeecCC-CCccCC
Q psy590          170 INPCQEDSCGEHAICIPK-NHGIDCQCQS-GHQGNP  203 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~~-~g~~~C~C~~-G~~g~~  203 (257)
                      ||+|.+++|.++++|++. .++|+|.|+. ||+|..
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~   37 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPN   37 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTT
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcC
Confidence            788999999999999875 6789999986 999987

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.1e-07  Score=52.27  Aligned_cols=33  Identities=18%  Similarity=0.505  Sum_probs=27.4

Q ss_pred             cCCCCCC-CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          169 CINPCQE-DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       169 ~id~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |||||+. ++|.  +.|+|+.|+|+|.|++||++.+
T Consensus         1 DidEC~~~~~C~--~~C~N~~Gsy~C~C~~Gy~l~g   34 (40)
T d1dx5i3           1 DIDECENGGFCS--GVCHNLPGTFECICGPDSALAG   34 (40)
T ss_dssp             ECCHHHHCSSCS--SEEEECSSSEEEEECSSSSCEE
T ss_pred             CccccCCCcCcc--CEeeCCCCCeEeECCCCCeeCC
Confidence            4788864 5675  6999999999999999999754

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.8e-06  Score=49.54  Aligned_cols=38  Identities=39%  Similarity=0.978  Sum_probs=28.6

Q ss_pred             CCCCCC-CCCCCCCEeccCCCCeeeecCCCCccCCC-CCccc
Q psy590          170 INPCQE-DSCGEHAICIPKNHGIDCQCQSGHQGNPY-IACLS  209 (257)
Q Consensus       170 id~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~g~~~-~~C~~  209 (257)
                      ||||+. ++|.  ..|+|+.|+|+|.|++||+.... .+|++
T Consensus         1 idEC~~~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           1 IDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CCTTTTTTSCS--SCEECSSSCCEECCCTTEEECTTTCCEEE
T ss_pred             CccCCCCCCCC--CEeECCCCCEEeECCCCCeECCCCCcccc
Confidence            577864 4564  58999999999999999986532 24654

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.4e-06  Score=49.72  Aligned_cols=36  Identities=25%  Similarity=0.664  Sum_probs=29.7

Q ss_pred             cCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590           86 SNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus        86 ~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      |+|||...+              ..|. ++.|+|++|+|.|.|++||.+..
T Consensus         2 DidEC~~~~--------------~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1           2 DIDECRISP--------------DLCG-RGQCVNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             CCCTTTTCS--------------STTT-TSCEEEETTEEEECCCSSEEECT
T ss_pred             cccccCCCC--------------CCCC-CCEeEcCCCCeEEeCCCCCccCC
Confidence            678887653              5675 57999999999999999998763

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=2.7e-06  Score=48.81  Aligned_cols=33  Identities=27%  Similarity=0.813  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCCEeccC-CCCeeeecC-CCCccCC
Q psy590          171 NPCQEDSCGEHAICIPK-NHGIDCQCQ-SGHQGNP  203 (257)
Q Consensus       171 d~C~~~~C~~~~~C~~~-~g~~~C~C~-~G~~g~~  203 (257)
                      |+|.++||.++++|++. .++|+|.|+ +||+|..
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~   36 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGEN   36 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTT
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcC
Confidence            67888999999999875 678999996 6999987

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.2e-06  Score=49.76  Aligned_cols=35  Identities=26%  Similarity=0.722  Sum_probs=30.3

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCcc
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +.|. .++|.++++|++..++|.|.|.+||+|.   +|+
T Consensus         2 ~~C~-~~pC~ngg~C~~~~~~~~C~C~~g~~G~---~Ce   36 (39)
T d1g1ta2           2 AACT-NTSCSGHGECVETINNYTCKCDPGFSGL---KCE   36 (39)
T ss_dssp             CCCC-TTGGGGSEEEEEETTEEEEEECTTEEST---TSC
T ss_pred             Cccc-CCcCCCCcEEECCCCCEEEeCCCCCcCc---CcC
Confidence            4676 7899999999999999999999999998   665

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.8e-06  Score=49.24  Aligned_cols=40  Identities=23%  Similarity=0.413  Sum_probs=28.6

Q ss_pred             CCCCCCC---CCCCCCEeccCCCCeeeecCCCCccCCC-CCccc
Q psy590          170 INPCQED---SCGEHAICIPKNHGIDCQCQSGHQGNPY-IACLS  209 (257)
Q Consensus       170 id~C~~~---~C~~~~~C~~~~g~~~C~C~~G~~g~~~-~~C~~  209 (257)
                      ||||+..   .+...+.|+|+.|+|+|.|++||+.... .+|.|
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            5777653   2234579999999999999999985432 24654

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.4e-06  Score=48.71  Aligned_cols=35  Identities=23%  Similarity=0.632  Sum_probs=30.3

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCcc
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +.|. .++|.++++|++..++|.|.|++||.|.   +|+
T Consensus         2 ~~C~-~~pC~ngg~C~~~~~~y~C~C~~g~~G~---~Ce   36 (40)
T d1g1sa2           2 ASCQ-DMSCSKQGECLETIGNYTCSCYPGFYGP---ECE   36 (40)
T ss_dssp             CCCC-TTGGGGSEEEEECSSSEEEEECTTEEST---TSC
T ss_pred             Cccc-CCcCCCCcEEECCCCCeEEeCCCCccCC---CCC
Confidence            4566 7899999999999999999999999998   665

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=3.9e-06  Score=49.17  Aligned_cols=39  Identities=21%  Similarity=0.419  Sum_probs=26.4

Q ss_pred             CCCCCCC---CCCCCCEeccCCCCeeeecCCCCccCCC-CCcc
Q psy590          170 INPCQED---SCGEHAICIPKNHGIDCQCQSGHQGNPY-IACL  208 (257)
Q Consensus       170 id~C~~~---~C~~~~~C~~~~g~~~C~C~~G~~g~~~-~~C~  208 (257)
                      ||||+..   .+...+.|+|+.|+|+|.|++||+.... ++|.
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCS   43 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCccc
Confidence            5777642   2334579999999999999999985432 2354

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.8e-06  Score=49.04  Aligned_cols=27  Identities=30%  Similarity=0.580  Sum_probs=23.3

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      ..|. ++.|+|++|+|.|.|++||....
T Consensus        10 ~~C~-~~~C~Nt~Gsy~C~C~~Gy~l~~   36 (42)
T d1lmja2          10 LLCR-GGVCHNTEGSYRCECPPGHQLSP   36 (42)
T ss_dssp             STTT-TSEEEEETTEEEEESCTTSCCCS
T ss_pred             CCCC-CCEeECCCCCeEEeCCCCCeECc
Confidence            6675 57999999999999999998653

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=4.5e-06  Score=47.42  Aligned_cols=30  Identities=27%  Similarity=0.573  Sum_probs=27.5

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCCCccCCC
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQGYEGNPA   73 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~   73 (257)
                      .+.|+.++.|+|+.|+|.|.|++||.|++.
T Consensus         6 ~~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~   35 (40)
T d1gl4a2           6 RHQCSVHAECRDYATGFCCRCVANYTGNGR   35 (40)
T ss_dssp             GGGSCTTEEEEECSSCEEEEECTTEEECSS
T ss_pred             CCCCCCCCEeecCCCCeEeECCCCCcCCCC
Confidence            578999999999999999999999999864

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.9e-06  Score=52.14  Aligned_cols=36  Identities=22%  Similarity=0.533  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCCCEec-----cCCCCeeeecCCCCccCCCCCcc
Q psy590          170 INPCQEDSCGEHAICI-----PKNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       170 id~C~~~~C~~~~~C~-----~~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      .++|.+++|.++|+|.     +..++|.|.|++||+|..   |+
T Consensus         6 c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~---Ce   46 (63)
T d1haea_           6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGAR---CT   46 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTT---SC
T ss_pred             CCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCC---cC
Confidence            5677779999999994     556789999999999998   76

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=7.3e-06  Score=46.94  Aligned_cols=33  Identities=24%  Similarity=0.633  Sum_probs=27.8

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCC
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNP   72 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~   72 (257)
                      +|||+..++|.  ..|+|+.|+|.|.|++||++.+
T Consensus         1 idEC~~~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~   33 (41)
T d1i0ua2           1 IDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDP   33 (41)
T ss_dssp             CCTTTTTTSCS--SCEECSSSCCEECCCTTEEECT
T ss_pred             CccCCCCCCCC--CEeECCCCCEEeECCCCCeECC
Confidence            47888667786  4799999999999999998763

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.1e-05  Score=47.68  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             CCeeeeCCCceeeeCCCCCccCC
Q psy590          114 NAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       114 ~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      ...|+|++|+|.|.|++||++..
T Consensus        23 ~~~C~Nt~GsY~C~C~~Gy~l~~   45 (53)
T d1apqa_          23 QHLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             SSEEEEETTEEEEECSTTCEECT
T ss_pred             cCEeEcCCCCeEeECCCCCeECC
Confidence            35899999999999999998654

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.4e-05  Score=44.70  Aligned_cols=31  Identities=29%  Similarity=0.818  Sum_probs=26.6

Q ss_pred             CCCCCCCCEeeeCC--CCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCHVVK--HRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~~C~   77 (257)
                      ++||.++++|++..  +.|.|.|++||+|.   +|+
T Consensus         3 ~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~---~Ce   35 (41)
T d1tpga1           3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGK---SCE   35 (41)
T ss_dssp             SCCSCTTCEEEEESSSSCEEEECCTTCBSS---SCC
T ss_pred             CCCCCCCCEEecCCCCCCeEECCCCCCCCC---CcC
Confidence            68899999998754  57999999999998   776

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.9e-06  Score=49.21  Aligned_cols=36  Identities=28%  Similarity=0.612  Sum_probs=28.9

Q ss_pred             cCCCCCCCCcccCCCccCCCCCCCCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590           86 SNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus        86 ~~~eC~~~~~c~g~~c~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      |+|||...+              ..|. ++.|+|++|+|.|.|.+||....
T Consensus         2 DinEC~~~~--------------~~c~-~~~C~Nt~Gsy~C~C~~Gy~l~~   37 (43)
T d1uzka2           2 DIDECQELP--------------GLCQ-GGKCINTFGSFQCRCPTGYYLNE   37 (43)
T ss_dssp             ECCHHHHCG--------------GGGB-TSEEEECSSCEEEECCTTCCBCT
T ss_pred             CcccccCCC--------------CCcC-CCEEECCCCCeEeECCCCCeECc
Confidence            678887543              5675 46999999999999999998663

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.1e-05  Score=46.76  Aligned_cols=34  Identities=29%  Similarity=0.686  Sum_probs=26.8

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCC
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNP   72 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~   72 (257)
                      +|||+.+..+. ++.|+|+.|+|.|.|++||.+..
T Consensus         3 idEC~~~~~~c-~~~C~Nt~G~y~C~C~~Gy~l~~   36 (43)
T d1uzka1           3 VNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNP   36 (43)
T ss_dssp             CCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECT
T ss_pred             ccccCCCCcCc-CCEeECCCCCEEEecCCCCEECC
Confidence            47887444443 47999999999999999998873

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.5e-06  Score=46.31  Aligned_cols=38  Identities=26%  Similarity=0.585  Sum_probs=27.7

Q ss_pred             CCCCCCCCCCCCCEeccCCCCeeeecCCCCccCCCCCc
Q psy590          170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIAC  207 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C  207 (257)
                      +|||+.+.-.-...|+|++++|+|.|++||+.....+|
T Consensus         2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~d~~tC   39 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC   39 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEETTTEE
T ss_pred             cccCCCCCCCCcCEEEcCCCCEEEECCCCCEECCCCcC
Confidence            67887543222359999999999999999987543334

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.60  E-value=1.9e-05  Score=45.38  Aligned_cols=35  Identities=29%  Similarity=0.720  Sum_probs=27.5

Q ss_pred             ccCCcCCCCCCCCEeeeC-CCCcEeeCCC-CCccCCCCCcc
Q psy590           39 DLCAIASLCAPSAKCHVV-KHRPVCTCPQ-GYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~-~g~~~C~C~~-G~~g~~~~~C~   77 (257)
                      |+|. .++|.++++|++. .++|.|.|.. ||+|.   +|+
T Consensus         3 d~C~-~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~---~Ce   39 (42)
T d1q4ga2           3 NPCC-YYPCQHQGICVRFGLDRYQCDCTRTGYSGP---NCT   39 (42)
T ss_dssp             CGGG-GCCCCTTCEEEEETTTEEEEECTTSSEETT---TTC
T ss_pred             ccCc-CCCCCCCCEeeeCCCCCEEEECCCCCcCCc---CcC
Confidence            6677 7888888899865 4778999976 89988   555

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.4e-05  Score=47.17  Aligned_cols=34  Identities=29%  Similarity=0.643  Sum_probs=26.1

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCcc
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      ++|. .++|.+ ++|++..++|.|.|++||.|.   +|+
T Consensus         9 ~~C~-~~PC~n-G~C~~~~~~y~C~C~~G~~G~---~Ce   42 (48)
T d1autl1           9 HPCA-SLCCGH-GTCIDGIGSFSCDCRSGWEGR---FCQ   42 (48)
T ss_dssp             CSSS-STTTTS-EEECCCSSCCCEEECTTEEST---TSC
T ss_pred             Cccc-CCCCCC-CEEECCCCCCeEeCCCCCcCC---Ccc
Confidence            5666 677765 678877788888888899887   665

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.5e-05  Score=43.94  Aligned_cols=35  Identities=23%  Similarity=0.729  Sum_probs=27.0

Q ss_pred             ccCCcCCCCCCCCEeeeC-CCCcEeeCC-CCCccCCCCCcc
Q psy590           39 DLCAIASLCAPSAKCHVV-KHRPVCTCP-QGYEGNPATKCY   77 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~-~g~~~C~C~-~G~~g~~~~~C~   77 (257)
                      |+|. .++|.++++|++. .++|+|.|+ +||.|.   +|+
T Consensus         2 d~C~-~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~---~Ce   38 (41)
T d1cvua2           2 NPCC-SNPCQNRGECMSTGFDQYKCDCTRTGFYGE---NCT   38 (41)
T ss_dssp             CTTT-TCCCCTTCEEEEEETTEEEEECTTSSEETT---TTC
T ss_pred             CcCc-CCCCCCCCEEEECCCCCEEEeCcCCCcCCc---CcC
Confidence            5676 7788888888765 467899996 689988   555

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.8e-05  Score=44.72  Aligned_cols=32  Identities=22%  Similarity=0.475  Sum_probs=26.9

Q ss_pred             cccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        38 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      +|||+..++|.  ..|+|+.|+|.|.|++||++.
T Consensus         2 idEC~~~~~C~--~~C~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3           2 IDECENGGFCS--GVCHNLPGTFECICGPDSALA   33 (40)
T ss_dssp             CCHHHHCSSCS--SEEEECSSSEEEEECSSSSCE
T ss_pred             ccccCCCcCcc--CEeeCCCCCeEeECCCCCeeC
Confidence            36777567786  589999999999999999875

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=8.4e-05  Score=44.82  Aligned_cols=35  Identities=20%  Similarity=0.590  Sum_probs=29.0

Q ss_pred             CCCCCCCCCCCCEecc--CCCCeeeecCCCCccCCCCCcc
Q psy590          171 NPCQEDSCGEHAICIP--KNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       171 d~C~~~~C~~~~~C~~--~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      ++|.+++|.++|+|+.  ...+|+|.|++||+|..   |+
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~---Ce   43 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDR---CQ   43 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSS---SC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCC---Cc
Confidence            4566789999999975  34689999999999997   76

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00011  Score=42.65  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.3

Q ss_pred             CCeeeeCCCceeeeCCCCCccCC
Q psy590          114 NAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       114 ~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      ...|+|++|+|.|.|.+||....
T Consensus        15 ~~~C~Nt~Gsy~C~C~~Gy~l~~   37 (45)
T d1szba2          15 DHHCHNHLGGFYCSCRAGYVLHR   37 (45)
T ss_dssp             SSEEEEETTEEEEECCTTEEECT
T ss_pred             CCCCccCCCCeEEECCCCCeECC
Confidence            46999999999999999998653

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00011  Score=41.98  Aligned_cols=31  Identities=23%  Similarity=0.460  Sum_probs=24.4

Q ss_pred             CCCCC---CCCCCCCEeccCCCCeeeecCCCCccCC
Q psy590          171 NPCQE---DSCGEHAICIPKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       171 d~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~g~~  203 (257)
                      |||+.   +.|.  ..|+|+.|+|+|.|++||+...
T Consensus         1 dEC~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~   34 (42)
T d1nzia2           1 NECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHD   34 (42)
T ss_dssp             CTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECT
T ss_pred             CCCCCCCCcCCC--CEeecCCCCEEEeCCCCCEECC
Confidence            45653   3565  5999999999999999998654

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.0001  Score=42.82  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             CCeeeeCCCceeeeCCCCCccCC
Q psy590          114 NAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       114 ~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      ...|+|++|+|.|.|++||....
T Consensus        15 ~~~C~Nt~gsy~C~C~~Gy~L~~   37 (45)
T d1nt0a3          15 DHYCHNYLGGYYCSCRVGYILHQ   37 (45)
T ss_dssp             SSEEEEETTEEEEECCTTEEECT
T ss_pred             CCEeecCCCCEEEeCCCCCEECC
Confidence            45999999999999999998653

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.4e-05  Score=44.36  Aligned_cols=35  Identities=20%  Similarity=0.539  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCCEecc--CCCCeeeecCCCCccCCCCCcc
Q psy590          171 NPCQEDSCGEHAICIP--KNHGIDCQCQSGHQGNPYIACL  208 (257)
Q Consensus       171 d~C~~~~C~~~~~C~~--~~g~~~C~C~~G~~g~~~~~C~  208 (257)
                      ++|.+++|.++|+|+.  ...+|+|.|+.||+|..   |+
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~---Ce   41 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGER---CQ   41 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTEESTT---SC
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCC---CC
Confidence            4566788999999975  44679999999999997   76

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0002  Score=38.34  Aligned_cols=32  Identities=31%  Similarity=0.753  Sum_probs=27.5

Q ss_pred             ccCCcCCCCCCCCEeeeCCCCcEeeCCCCCccC
Q psy590           39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGN   71 (257)
Q Consensus        39 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~   71 (257)
                      |+|...++|++ ++|.|..|+|.|.|..||.-.
T Consensus         2 dECsignpCGn-GTCtNviGgFec~C~~GFepg   33 (39)
T d1emoa2           2 DECSVGNPCGN-GTCKNVIGGFECTCEEGFEPG   33 (39)
T ss_dssp             CGGGTTCSSSS-SCEEECSSSEEECCSSSSCCC
T ss_pred             CccccCCccCC-ceeeecccceEEeecCCcCCC
Confidence            67876789986 799999999999999999654

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00034  Score=37.45  Aligned_cols=30  Identities=27%  Similarity=0.860  Sum_probs=25.2

Q ss_pred             CCCCC-CCCCCCCEeccCCCCeeeecCCCCcc
Q psy590          171 NPCQE-DSCGEHAICIPKNHGIDCQCQSGHQG  201 (257)
Q Consensus       171 d~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~g  201 (257)
                      |+|+. ++|++ ++|.|..|+|.|.|..||..
T Consensus         2 dECsignpCGn-GTCtNviGgFec~C~~GFep   32 (39)
T d1emoa2           2 DECSVGNPCGN-GTCKNVIGGFECTCEEGFEP   32 (39)
T ss_dssp             CGGGTTCSSSS-SCEEECSSSEEECCSSSSCC
T ss_pred             CccccCCccCC-ceeeecccceEEeecCCcCC
Confidence            56653 78885 89999999999999999974

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00024  Score=40.04  Aligned_cols=26  Identities=31%  Similarity=0.695  Sum_probs=22.1

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      ..|.  ..|++++++|.|.|++||....
T Consensus        10 ggC~--h~C~n~~g~~~C~C~~Gy~L~d   35 (40)
T d3bpse1          10 GGCS--HVCNDLKIGYECLCPDGFQLVA   35 (40)
T ss_dssp             GGCS--SEEEECSSSEEEECCTTCCEET
T ss_pred             CCCc--CEEEcCCCCEEEECCCCCEECC
Confidence            5675  4999999999999999998653

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00019  Score=44.85  Aligned_cols=34  Identities=24%  Similarity=0.725  Sum_probs=27.2

Q ss_pred             cCCcCCCCCCCCEee-----eCCCCcEeeCCCCCccCCCCCcc
Q psy590           40 LCAIASLCAPSAKCH-----VVKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        40 ~C~~~~~C~~~~~C~-----~~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      +|. .++|.++++|.     +..++|.|.|++||+|.   +|+
T Consensus         8 ec~-~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~---~Ce   46 (63)
T d1haea_           8 EKE-KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA---RCT   46 (63)
T ss_dssp             HHH-HTTSCTTCEEEEEESSSSSCCEEEECCTTEEST---TSC
T ss_pred             CCc-CCcCCCCCEEeecccccCCCCEEeECCCCCCCC---CcC
Confidence            444 67898999995     34468999999999998   776

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00079  Score=38.22  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             CCCCCCCeeeeCCCceeeeCCCCCccCC
Q psy590          109 SPCAPNAVCINKNHATDCSCLEGFQGNG  136 (257)
Q Consensus       109 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~  136 (257)
                      ..|.  ..|+|++|+|.|.|++||....
T Consensus         9 ~~C~--~~C~n~~Gsy~C~C~~Gy~L~~   34 (42)
T d1nzia2           9 VPCS--HFCNNFIGGYFCSCPPEYFLHD   34 (42)
T ss_dssp             CCSS--SEEEEETTEEEEECCTTCEECT
T ss_pred             cCCC--CEeecCCCCEEEeCCCCCEECC
Confidence            5675  4899999999999999998653

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00097  Score=39.92  Aligned_cols=32  Identities=25%  Similarity=0.757  Sum_probs=25.7

Q ss_pred             CCCCCCCCEeeeCC--CCcEeeCCCCCccCCCCCccC
Q psy590           44 ASLCAPSAKCHVVK--HRPVCTCPQGYEGNPATKCYL   78 (257)
Q Consensus        44 ~~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~~C~~   78 (257)
                      .++|.++++|+...  ..|+|.|++||.|.   +|+.
T Consensus        11 ~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~---~Ce~   44 (53)
T d3egfa_          11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGD---RCQT   44 (53)
T ss_dssp             SCCSCSSCEEEEESSSSCEEEECCTTCCSS---SSCC
T ss_pred             CCCCCCCcEeeccCCCCCeEeECCCCCcCC---CCcc
Confidence            56888888997543  57999999999998   6763

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00066  Score=39.79  Aligned_cols=31  Identities=26%  Similarity=0.795  Sum_probs=25.1

Q ss_pred             CCCCCCCCEeeeCC--CCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCHVVK--HRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .++|.++++|+...  ..|.|.|.+||+|.   +|+
T Consensus         9 ~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~---~Ce   41 (48)
T d1nqlb_           9 DGYCLHDGVCMYIEALDKYACNCVVGYIGE---RCQ   41 (48)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEEST---TSC
T ss_pred             CCCCCCCcEEeeeCCCCCeEEeCCCCcccC---CCC
Confidence            57788889997643  57899999999998   665

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.11  E-value=0.001  Score=39.43  Aligned_cols=32  Identities=19%  Similarity=0.420  Sum_probs=25.9

Q ss_pred             CEeccCCCCeeeecCCCCccCC-CCCcccCccc
Q psy590          182 AICIPKNHGIDCQCQSGHQGNP-YIACLSELIC  213 (257)
Q Consensus       182 ~~C~~~~g~~~C~C~~G~~g~~-~~~C~~~~~C  213 (257)
                      ..|+++.++|+|.|+.||+... ..+|.+++++
T Consensus        10 h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_          10 QFCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             SCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             cEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence            4789999999999999998643 3469888765

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0025  Score=37.50  Aligned_cols=31  Identities=16%  Similarity=0.402  Sum_probs=24.9

Q ss_pred             CEeccCCCCeeeecCCCCccCCC-CCcccCcc
Q psy590          182 AICIPKNHGIDCQCQSGHQGNPY-IACLSELI  212 (257)
Q Consensus       182 ~~C~~~~g~~~C~C~~G~~g~~~-~~C~~~~~  212 (257)
                      ..|+++.++|+|.|+.||+.... ++|.++++
T Consensus        11 ~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~   42 (50)
T d1autl2          11 HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK   42 (50)
T ss_dssp             SEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred             cEeecCCCCeEEECCCCCEECCCCCccccCCC
Confidence            58999999999999999997543 35876654

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0043  Score=35.74  Aligned_cols=30  Identities=27%  Similarity=0.568  Sum_probs=23.7

Q ss_pred             CCCCCCCEec--cCCCCeeeecCCCCccCCCCCccc
Q psy590          176 DSCGEHAICI--PKNHGIDCQCQSGHQGNPYIACLS  209 (257)
Q Consensus       176 ~~C~~~~~C~--~~~g~~~C~C~~G~~g~~~~~C~~  209 (257)
                      +.|.+ |.|.  .....+.|.|+.||+|++   |+-
T Consensus        12 ~yC~n-G~C~~~~~~~~~~C~C~~gY~G~R---Ce~   43 (46)
T d1k36a_          12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVR---CEH   43 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEEECTTCSSTT---SCC
T ss_pred             CcCcC-CEEEEeCCCCccEeECCCCceecC---cee
Confidence            67887 6774  455679999999999997   753

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0027  Score=37.33  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             CCCCCCCEec-cCCCCeeeecCCCCccCCCCCcccCc
Q psy590          176 DSCGEHAICI-PKNHGIDCQCQSGHQGNPYIACLSEL  211 (257)
Q Consensus       176 ~~C~~~~~C~-~~~g~~~C~C~~G~~g~~~~~C~~~~  211 (257)
                      +.|.+++.|. .....+.|.|+.||+|+.   |+-++
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~r---Ce~~~   47 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGAR---CERVD   47 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTT---TCEEC
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCC---Cccce
Confidence            5799888884 445678999999999997   76443

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0031  Score=36.86  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=25.5

Q ss_pred             CCCCCCCEec-cCCCCeeeecCCCCccCCCCCcccCc
Q psy590          176 DSCGEHAICI-PKNHGIDCQCQSGHQGNPYIACLSEL  211 (257)
Q Consensus       176 ~~C~~~~~C~-~~~g~~~C~C~~G~~g~~~~~C~~~~  211 (257)
                      +.|.+++.|. .....+.|.|+.||+|.+   |+-++
T Consensus        13 ~yClnGgcc~~~~~~~~~C~C~~gy~G~R---Ce~~~   46 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACVCHSGYVGAR---CEHAD   46 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEEECTTEESTT---SCEEC
T ss_pred             CEeeCCeEEecCCCCCcEeECCCCCEecC---Ccccc
Confidence            5688878773 445678999999999998   76443

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0026  Score=37.60  Aligned_cols=31  Identities=19%  Similarity=0.420  Sum_probs=24.9

Q ss_pred             CEeccCCCCeeeecCCCCccCC-CCCcccCcc
Q psy590          182 AICIPKNHGIDCQCQSGHQGNP-YIACLSELI  212 (257)
Q Consensus       182 ~~C~~~~g~~~C~C~~G~~g~~-~~~C~~~~~  212 (257)
                      ..|+++.++|+|.|+.||+... ..+|.++++
T Consensus        12 h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~   43 (51)
T d2p3ua1          12 QFCHEEQNSVVCSCARGYTLADNGKACIPTGP   43 (51)
T ss_dssp             SEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred             cEeecCCCCeEeEcCCCCEECCCCCccccCCc
Confidence            5899999999999999998643 245876654

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.011  Score=34.59  Aligned_cols=26  Identities=23%  Similarity=0.500  Sum_probs=21.7

Q ss_pred             CCCCCCCEeeeCCCCcEeeCCCCCccCC
Q psy590           45 SLCAPSAKCHVVKHRPVCTCPQGYEGNP   72 (257)
Q Consensus        45 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~   72 (257)
                      ..|.  ..|+++.++|.|.|+.||++..
T Consensus         7 GgC~--~~C~~~~g~~~C~C~~Gy~L~~   32 (50)
T d1autl2           7 GGCT--HYCLEEVGWRRCSCAPGYKLGD   32 (50)
T ss_dssp             GGCS--SEEEECSSSEEEECCTTEEECT
T ss_pred             CCcc--cEeecCCCCeEEECCCCCEECC
Confidence            4565  4799999999999999998873

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.73  E-value=0.0047  Score=36.47  Aligned_cols=38  Identities=26%  Similarity=0.582  Sum_probs=27.2

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCCCccCCCCCccCCCCCCCCcCCCC
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEEC   90 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~C~~~~eC   90 (257)
                      ...|..  .|+++.++|.|.|++||.+..       +...|.+++++
T Consensus         5 NGgC~h--~C~~~~~~~~C~C~~Gy~L~~-------D~~tC~~~~~~   42 (51)
T d1kigl_           5 NGGCDQ--FCREERSEVRCSCAHGYVLGD-------DSKSCVSTERF   42 (51)
T ss_dssp             TTSSSS--CCCEETTEECCCCCTTEEECT-------TSSCEEECSSS
T ss_pred             CCCccc--EeEcCCCcEEeEcCCCCEECC-------CCCccccCCcc
Confidence            345653  588999999999999998763       34456665544

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.011  Score=34.83  Aligned_cols=27  Identities=30%  Similarity=0.701  Sum_probs=22.1

Q ss_pred             CCCCCCCCEeeeCCCCcEeeCCCCCccCC
Q psy590           44 ASLCAPSAKCHVVKHRPVCTCPQGYEGNP   72 (257)
Q Consensus        44 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~   72 (257)
                      .+.|..  .|+++.++|.|.|+.||.+..
T Consensus         7 NGgC~h--~C~n~~g~~~C~C~~Gy~L~~   33 (51)
T d2p3ua1           7 NGDCDQ--FCHEEQNSVVCSCARGYTLAD   33 (51)
T ss_dssp             GGGCSS--EEEEETTEEEEECCTTEEECT
T ss_pred             CCCccc--EeecCCCCeEeEcCCCCEECC
Confidence            345653  799999999999999998763

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.045  Score=31.82  Aligned_cols=31  Identities=32%  Similarity=0.771  Sum_probs=24.6

Q ss_pred             CCCCCCCCEeeeCC-CCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCHVVK-HRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .+.|.+++.|.... +.+.|.|+.||+|.   +|+
T Consensus        13 ~~yC~nGgcc~~~~~~~~~C~C~~gy~G~---rCe   44 (50)
T d1ioxa_          13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGA---RCE   44 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEECCCTTEETT---TTC
T ss_pred             CCCccCCeEEEeCCCCCcEeECCCCCeeC---CCc
Confidence            46788888885443 56899999999998   665

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.045  Score=31.85  Aligned_cols=31  Identities=19%  Similarity=0.566  Sum_probs=21.7

Q ss_pred             CCCCCCC--CCCCCEec------cCCCCeeeecCCCCccCC
Q psy590          171 NPCQEDS--CGEHAICI------PKNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       171 d~C~~~~--C~~~~~C~------~~~g~~~C~C~~G~~g~~  203 (257)
                      |+|..+.  |.  ..|+      +..++|+|.|+.||+...
T Consensus         5 neC~~~NGGC~--h~Cl~~p~~~n~~~~y~C~C~~G~~L~~   43 (50)
T d1ijqa2           5 ERTTLSNGGCQ--YLCLPAPQINPHSPKFTCACPDGMLLAR   43 (50)
T ss_dssp             SSSSSGGGGCS--SEEEECCCCSTTCCSEEEECCTTCEECT
T ss_pred             cccCCCCCCCc--CccCCCcCcccCCCCEEEeCCCCCEECC
Confidence            4555432  44  4886      455799999999998754

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.063  Score=32.10  Aligned_cols=31  Identities=16%  Similarity=0.421  Sum_probs=23.7

Q ss_pred             CEeccCC-CCeeeecCCCCccCC-CCCcccCcc
Q psy590          182 AICIPKN-HGIDCQCQSGHQGNP-YIACLSELI  212 (257)
Q Consensus       182 ~~C~~~~-g~~~C~C~~G~~g~~-~~~C~~~~~  212 (257)
                      ..|+++. ++|+|.|+.||+... ..+|.++++
T Consensus        12 h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~   44 (57)
T d1rfnb_          12 QFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP   44 (57)
T ss_dssp             SEEEECTTSCEEEECCTTEEECTTSSSEEECSS
T ss_pred             cEeeeCCCCCeEeECCCCCEECCCCCccccCCC
Confidence            5898885 589999999998643 346887664

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.041  Score=31.84  Aligned_cols=31  Identities=29%  Similarity=0.824  Sum_probs=23.6

Q ss_pred             CCCCCCCCEeeeCC-CCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCHVVK-HRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .+.|.+++.|.... ..+.|.|++||.|.   +|+
T Consensus        12 ~~yClnGgcc~~~~~~~~~C~C~~gy~G~---RCe   43 (49)
T d1moxc_          12 TQFCFHGTCRFLVQEDKPACVCHSGYVGA---RCE   43 (49)
T ss_dssp             SCSSTTEEEEEETTTTEEEEEECTTEEST---TSC
T ss_pred             CCEeeCCeEEecCCCCCcEeECCCCCEec---CCc
Confidence            46788877774433 57899999999998   665

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.082  Score=30.66  Aligned_cols=26  Identities=23%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             CCCCCCCEee------eCCCCcEeeCCCCCccCC
Q psy590           45 SLCAPSAKCH------VVKHRPVCTCPQGYEGNP   72 (257)
Q Consensus        45 ~~C~~~~~C~------~~~g~~~C~C~~G~~g~~   72 (257)
                      ..|..  .|+      +..++|.|.|+.||++..
T Consensus        12 GGC~h--~Cl~~p~~~n~~~~y~C~C~~G~~L~~   43 (50)
T d1ijqa2          12 GGCQY--LCLPAPQINPHSPKFTCACPDGMLLAR   43 (50)
T ss_dssp             GGCSS--EEEECCCCSTTCCSEEEECCTTCEECT
T ss_pred             CCCcC--ccCCCcCcccCCCCEEEeCCCCCEECC
Confidence            44653  676      344789999999998873

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.11  Score=27.63  Aligned_cols=26  Identities=19%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             CCCCCEeccC---CCCeeeecCCCCccCC
Q psy590          178 CGEHAICIPK---NHGIDCQCQSGHQGNP  203 (257)
Q Consensus       178 C~~~~~C~~~---~g~~~C~C~~G~~g~~  203 (257)
                      |.++++|+..   .+-.+|.||.+|.|.-
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~H   32 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQH   32 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTT
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCcee
Confidence            7788999865   4557899999999987

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.087  Score=29.95  Aligned_cols=30  Identities=27%  Similarity=0.728  Sum_probs=22.5

Q ss_pred             CCCCCCCCEeee--CCCCcEeeCCCCCccCCCCCcc
Q psy590           44 ASLCAPSAKCHV--VKHRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        44 ~~~C~~~~~C~~--~~g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .+.|.+ +.|..  ....+.|.|++||.|.   +|+
T Consensus        11 ~~yC~n-G~C~~~~~~~~~~C~C~~gY~G~---RCe   42 (46)
T d1k36a_          11 NGYCLH-GQCIYLVDMSQNYCRCEVGYTGV---RCE   42 (46)
T ss_dssp             CSSCSS-EEEEEETTTTEEEEEECTTCSST---TSC
T ss_pred             CCcCcC-CEEEEeCCCCccEeECCCCceec---Cce
Confidence            467876 66753  3357899999999998   665

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.16  Score=26.98  Aligned_cols=29  Identities=28%  Similarity=0.730  Sum_probs=23.0

Q ss_pred             CCCCCCEeeeCC---CCcEeeCCCCCccCCCCCcc
Q psy590           46 LCAPSAKCHVVK---HRPVCTCPQGYEGNPATKCY   77 (257)
Q Consensus        46 ~C~~~~~C~~~~---g~~~C~C~~G~~g~~~~~C~   77 (257)
                      .|.++++|+...   .-..|.|+.+|.|.   .|+
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~---HCE   34 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQ---HCE   34 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEEST---TSC
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCce---eEE
Confidence            477889998654   45679999999998   666

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.50  E-value=0.078  Score=29.35  Aligned_cols=26  Identities=23%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             CCCCCCEecc--CCCCeeeecCCCCccCC
Q psy590          177 SCGEHAICIP--KNHGIDCQCQSGHQGNP  203 (257)
Q Consensus       177 ~C~~~~~C~~--~~g~~~C~C~~G~~g~~  203 (257)
                      -|.+ |+|..  ....+.|+|..||+|.+
T Consensus         9 yCih-G~C~~i~~l~~~~C~C~~gY~G~R   36 (41)
T d1xdtr_           9 FCIH-GECKYVKELRAPSCICHPGYHGER   36 (41)
T ss_dssp             CCSS-EEECCBGGGTBCCEEECTTEESTT
T ss_pred             EeEC-cEEeecCcCCCceeECCCCCeecC
Confidence            4665 88853  35678999999999987

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.23  Score=29.47  Aligned_cols=25  Identities=28%  Similarity=0.755  Sum_probs=19.8

Q ss_pred             CCCCCCCEeeeCC-CCcEeeCCCCCccC
Q psy590           45 SLCAPSAKCHVVK-HRPVCTCPQGYEGN   71 (257)
Q Consensus        45 ~~C~~~~~C~~~~-g~~~C~C~~G~~g~   71 (257)
                      +.|..  .|+++. ++|.|.|..||.+.
T Consensus         8 GgC~h--~C~~~~~~~~~C~C~~Gy~L~   33 (57)
T d1rfnb_           8 GRCEQ--FCKNSADNKVVCSCTEGYRLA   33 (57)
T ss_dssp             GGCSS--EEEECTTSCEEEECCTTEEEC
T ss_pred             CCccc--EeeeCCCCCeEeECCCCCEEC
Confidence            44653  798886 47999999999876

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=0.15  Score=27.73  Aligned_cols=31  Identities=26%  Similarity=0.699  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCCEeccCC-CCeeeecCCCCccC
Q psy590          170 INPCQEDSCGEHAICIPKN-HGIDCQCQSGHQGN  202 (257)
Q Consensus       170 id~C~~~~C~~~~~C~~~~-g~~~C~C~~G~~g~  202 (257)
                      +|+|...+|..  +|.... ++|+|.|..||...
T Consensus         4 vDPCf~~~CE~--qCqP~~~~~Y~CiCaeGFaP~   35 (43)
T d1dx5i1           4 VDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPI   35 (43)
T ss_dssp             CCGGGGCCCSS--EEEECSSSCEEEECCTTEEEE
T ss_pred             cccccCCCcce--eeeeCCCCcceEEeccccccC
Confidence            67887777864  787764 58999999999753

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.40  E-value=0.32  Score=28.37  Aligned_cols=29  Identities=17%  Similarity=0.462  Sum_probs=21.0

Q ss_pred             CEeccCCC-CeeeecCCCCccCCC-CCcccC
Q psy590          182 AICIPKNH-GIDCQCQSGHQGNPY-IACLSE  210 (257)
Q Consensus       182 ~~C~~~~g-~~~C~C~~G~~g~~~-~~C~~~  210 (257)
                      ..|+++.+ .|+|.|+.||+.... .+|...
T Consensus        11 h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~   41 (53)
T d2bz6l1          11 QYCSDHTGTKRSCRCHEGYSLLADGVSCTPT   41 (53)
T ss_dssp             SEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred             CEeeeCCCCCEEeECCCCCEECCCCCcccCC
Confidence            48888876 589999999986432 347643