Psyllid ID: psy6053
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 614 | 2.2.26 [Sep-21-2011] | |||||||
| A1ZAI5 | 625 | Putative fatty acyl-CoA r | no | N/A | 0.835 | 0.820 | 0.355 | 1e-104 | |
| Q922J9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.794 | 0.947 | 0.343 | 2e-91 | |
| Q7ZXF5 | 515 | Fatty acyl-CoA reductase | N/A | N/A | 0.794 | 0.947 | 0.347 | 2e-90 | |
| Q8WVX9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.794 | 0.947 | 0.341 | 4e-90 | |
| Q5R834 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.794 | 0.947 | 0.339 | 1e-89 | |
| Q66H50 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.798 | 0.951 | 0.350 | 8e-89 | |
| Q5ZM72 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.794 | 0.947 | 0.339 | 3e-86 | |
| Q960W6 | 516 | Putative fatty acyl-CoA r | no | N/A | 0.768 | 0.914 | 0.336 | 8e-85 | |
| Q7TNT2 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.804 | 0.959 | 0.323 | 5e-81 | |
| Q0P5J1 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.804 | 0.959 | 0.313 | 3e-80 |
| >sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/523 (35%), Positives = 303/523 (57%), Gaps = 10/523 (1%)
Query: 70 NNMNVPYETFYKPPVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNV 129
N + +PYE F +++ +P I + + G+++F+TG +GF+GKVL+EK+LR P +
Sbjct: 100 NGLQMPYERFR-----ADDTSYVP--IAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEI 152
Query: 130 KKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKES 189
+ IY+L+R K+G+ R+ EL +PLF L+ K + KV+PISGD ++EL I E
Sbjct: 153 RNIYLLIRPKRGQEVSARLTELLNAPLFESLRQ-EKPKELSKVIPISGDITSEELGISEK 211
Query: 190 DRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249
D+ LL V ++ H AAT++FDE LK +V +N GTK ++ L M L+ +H+STAYC
Sbjct: 212 DQNLLCRNVSVVFHSAATVKFDEKLKLSVTINMLGTKRLVELCHRMLSLDALIHVSTAYC 271
Query: 250 HLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVV 309
+ + E Y PP +P +I + + ED +++ +G+ PN+Y +TK L+E +++
Sbjct: 272 NCDRTDVSEVIYAPPYNPDDIISLINWLPEDILDQLTPRLIGKRPNTYTFTKALAEHMLL 331
Query: 310 EAMNNGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADF 369
+ N +P ++RPSI+ EP GW DN NGPTGL+ KG+ RTM C+ AD
Sbjct: 332 KEAGN-LPVAIVRPSIVTASLNEPFAGWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADM 390
Query: 370 LPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGC 429
+PVDI IN + A W ++K + I + + Q + W E + + V PL GC
Sbjct: 391 VPVDIVINLMIAAAWRTATRKSNNLLIYNCCTGQRNPIIWSEFVKHAMTSVRKH-PLEGC 449
Query: 430 VWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYY 489
+WYP G ++ NR ++ + I H +PAY LD + + G KP +V +Q++I K E EY+
Sbjct: 450 LWYPTGDLRMNRPMNTLNCIAKHFLPAYILDGVARIMGKKPFVVNVQNKIAKAVECLEYF 509
Query: 490 ANNQWEFRNEYVHVLRKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLP 549
A QW F+++ VH L ++ ++R + D ++ KY + ++ R F+ K+ PE+LP
Sbjct: 510 ATRQWRFKDDNVHALLHTLSPKDREIFVFDVRHINWDKYVERYVLGFREFLFKQRPESLP 569
Query: 550 AARRHMRIMYWVDVIAKTLFFVFILYTLSSYSETLRNLFQVFF 592
A+R+ M +Y++ + K + + L S S+ L +L+ F
Sbjct: 570 ASRKRMLRLYYLHQLTKLVAVLLTWRFLMSRSKRLNDLWSSFL 612
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2 |
| >sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/495 (34%), Positives = 280/495 (56%), Gaps = 7/495 (1%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +S
Sbjct: 4 IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSSK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ +K++ I+ + +LA+ E D++++ +++ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W +
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIM 301
Query: 396 IVHLTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+ + T+ W E + +++T PL P ++ SN LL+ + H
Sbjct: 302 VYNCTTGSTNPFHWGE---VEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHK 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
PA+ D + ++G P ++K R++K EY+ +N W + + V++L +N ++
Sbjct: 359 APAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDK 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ ID L +Y ++ M T+ ++L E LPAAR+H+ + + T+ + I
Sbjct: 419 KTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILI 478
Query: 574 LYTLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 479 WRIFIARSQMARNIW 493
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q7ZXF5|FACR1_XENLA Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/495 (34%), Positives = 275/495 (55%), Gaps = 7/495 (1%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GF+GKVLLEK+LR PN K +Y+L+R K G+ R+R+ E+ +
Sbjct: 4 IPEFYQGKNVLITGATGFMGKVLLEKLLRSCPNTKAVYVLVRHKAGQKPRERVAEMMSCK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ KV+ IS + EL + + D+ L +DI+ H AAT+RF+E+L+
Sbjct: 64 LFDKLRD-EQPDCAQKVIAISSELTQPELDMSKEDQDTLIDCIDIVFHCAATVRFNESLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
A+ LN T+ +L LA++MK LE+F+H+STAY + K + E YPPP DP KLIE +E
Sbjct: 123 DAMQLNVIATRQLLYLAQKMKKLEVFIHVSTAYANCNRKQIEEVVYPPPVDPKKLIESLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + + ++RPSI+ W+EP P
Sbjct: 183 WMDDSLVNDITPKLIGDRPNTYTYTKALAE-YVVQQEGSKLNIAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W +
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNNAVADLIPVDVVVNTTLAAAWYSGVNRPKNML 301
Query: 396 IVHLTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+ + T+ W E + +++T PL P ++ SN LL+ + H
Sbjct: 302 VYNCTTGGTNPFHWGE---VEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHK 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
PA D + ++G P ++K R+++ + EY+ +N W + NE ++L ++ ++
Sbjct: 359 APALLYDVYLRITGRSPRMMKTITRLHRAMMLLEYFTSNSWVWNNENTNMLMSQLSPEDK 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ D L +Y ++ M T+ ++L E LPAAR+H+ + + T+ V I
Sbjct: 419 KVFNFDVRQLHWAEYMENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVVLI 478
Query: 574 LYTLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 479 WRVFIARSQMARNIW 493
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q8WVX9|FACR1_HUMAN Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 169/495 (34%), Positives = 279/495 (56%), Gaps = 7/495 (1%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +
Sbjct: 4 IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ +K++ I+ + +LA+ E D++++ +I+ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFREKIIAINSELTQPKLALSEEDKEVIIDSTNIIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RT+ N AD +PVD+ +N A W +
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNIM 301
Query: 396 IVHLTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+ + T+ W E + +++T PL P ++ SN LL+ + H
Sbjct: 302 VYNCTTGSTNPFHWGE---VEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHK 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
PA+ D + ++G P ++K R++K EY+ +N W + E V++L +N ++
Sbjct: 359 APAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTENVNMLMNQLNPEDK 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ ID L +Y ++ + T+ ++L E LPAAR+H+ + + T+ + I
Sbjct: 419 KTFNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILI 478
Query: 574 LYTLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 479 WRIFIARSQMARNIW 493
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (849), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 168/495 (33%), Positives = 279/495 (56%), Gaps = 7/495 (1%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +
Sbjct: 4 IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ +K++ I+ + +LA+ E D++++ +I+ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFREKIIAINSELTQPKLALSEEDKEVIIESTNIIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RT+ N AD +PVD+ +N A W +
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNIM 301
Query: 396 IVHLTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+ + T+ W E + +++T PL P ++ SN LL+ + H
Sbjct: 302 VYNCTTGSTNPFHWGE---VEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHK 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
PA+ D + ++G P ++K R++K EY+ +N W + + V++L +N ++
Sbjct: 359 APAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDK 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ ID L +Y ++ + T+ ++L E LPAAR+H+ + + T+ + I
Sbjct: 419 KTFNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILI 478
Query: 574 LYTLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 479 WRIFIARSQMARNIW 493
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 173/493 (35%), Positives = 276/493 (55%), Gaps = 3/493 (0%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +
Sbjct: 4 IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ K++ I+ + +LA+ E D++++ +++ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W +
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIM 301
Query: 396 IVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIP 455
+ + T+ W E+ D T PLN +P SN L+ H +P
Sbjct: 302 VYNCTTGSTNPFHWGEVGDYLNHSFKTN-PLNQVFRHPYVKFYSNNLMLHYWKGVKHTVP 360
Query: 456 AYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERIE 515
A LD + L+G KP ++K R++K EY+ +N W + + V++L +N ++
Sbjct: 361 ALLLDLALRLTGQKPWMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKT 420
Query: 516 YKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFILY 575
+ ID L +Y ++ M T+ ++L E LPAAR+H+ + + T+ + I
Sbjct: 421 FNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWR 480
Query: 576 TLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 481 IFIARSQMARNIW 493
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 168/495 (33%), Positives = 272/495 (54%), Gaps = 7/495 (1%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GF+GKVLLEK+LR P VK +Y+L+R K G+ RIEE+ +
Sbjct: 4 IPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEITSCK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ +K++ I+ + EL + ++ L ++I+ H AAT+RF+E L+
Sbjct: 64 LFDRLRE-EQPDFKEKIIVITSELTQPELDLSNPVKEKLIECINIIFHCAATVRFNETLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN TK +LSLA++M +LE+F+H+STAY + K + E YPPP DP KL++ +E
Sbjct: 123 DAVQLNVLSTKQLLSLAQQMTNLEVFMHVSTAYAYCNRKHIEEVVYPPPVDPKKLMDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDSLVNDITPKLIGDRPNTYTYTKALAE-YVVQQEGARLNTAIIRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W +
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNGAVADLVPVDVVVNMTLAAAWYSGVNRPRNIM 301
Query: 396 IVHLTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+ + T+ W E + +++T PL P ++ SN LL+ + H
Sbjct: 302 VYNCTTGGTNPFHWSE---VEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHK 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
PA+ D + ++G P ++K R++K EY+ +N W + E + +L ++ ++
Sbjct: 359 APAFLYDIYLRITGRSPRMMKTITRLHKAMVFLEYFTSNSWIWNTENMTMLMNQLSPEDK 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ D L +Y ++ M T+ ++L E LPAAR+H+ + + T+ + I
Sbjct: 419 KTFNFDVRQLHWAEYMENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILI 478
Query: 574 LYTLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 479 WRIFIARSQMARNIW 493
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q960W6|FACR3_DROME Putative fatty acyl-CoA reductase CG8306 OS=Drosophila melanogaster GN=CG8306 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 162/482 (33%), Positives = 278/482 (57%), Gaps = 10/482 (2%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I + + G+ +F+TGA+GF+G ++EK+LR PNV +Y+LMR KKGK+ ++R+EEL +
Sbjct: 6 ITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNS 65
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
+F+ K + Q + K++PI GD + L I DRQ L V+++ H AAT+ F ++LK
Sbjct: 66 VFDKFKELQLQSRLSKIVPIEGDVGLEHLGISPKDRQTLIDNVNVVFHSAATLDFFQSLK 125
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
+ +N RGT+ ++ L +++K+L+ VH+S+AY + + EK YP P DP K+I+ E
Sbjct: 126 ETTNINLRGTRRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSE 185
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
+++D +++ + L + PN+Y +TK L+E V + PC ++RPS+I W+EP+P
Sbjct: 186 TLNDDALKELEPKLLKDHPNTYTFTKHLAEHEVANVASK-FPCGIVRPSMITAAWKEPIP 244
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GWT + NGP G +GA KGV+R + D + D++P+D+ +NGI + Y++ + +
Sbjct: 245 GWTISKNGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGY-YVNSLQAKNG 303
Query: 396 -------IVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICV 448
I HLTSS ++ + D S + + PLN VWYP + + + ++
Sbjct: 304 GRPADLQIFHLTSSTYKPFRFELMTDKINSYL-HDYPLNSAVWYPNLRLVKSLWVFRLSA 362
Query: 449 IFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIM 508
I FH IPA LD + + G +P LV++ + E + +W F ++ + L K +
Sbjct: 363 ILFHFIPAIILDLVTKIGGGRPILVRLHKNVWNSLNTLEKFIFTEWHFDSKRLLALSKTL 422
Query: 509 NKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTL 568
N ++ ++ ID +L +YF + I+ R ++ KE + L ARR +I+ + V +
Sbjct: 423 NIVDKKKFFIDIGELAWDEYFSNTILGVRQYLSKEPIKNLEKARRKDKILLGLHVALQLS 482
Query: 569 FF 570
F+
Sbjct: 483 FW 484
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 163/504 (32%), Positives = 276/504 (54%), Gaps = 10/504 (1%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I ++ K++ +TGA+GFLGKVL+EK+ R SP++K IYIL+R K G+ ++R+ ++ S
Sbjct: 4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF +K V + +K+ PIS D + AI + D Q L S +I+ H AAT+RFD L+
Sbjct: 64 LFEKVKEV-CPNVHEKIRPISADLNQRDFAISKEDVQELLSCTNIIFHCAATVRFDAHLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
+AV LN T+ +L +A +M LE F+HISTA+ + + E YP P +P K+I+ +E
Sbjct: 123 EAVQLNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDSME 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
+ + +E+ + +G+ PN+Y YTK L E +VV+ + + ++RPSI+ W+EP P
Sbjct: 183 WLDDSIIEEITPKLIGDRPNTYTYTKALGE-IVVQQESGNLNVAIVRPSIVGATWQEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN+NGP+GL+I GKG +R++ AD +PVD +N W +
Sbjct: 242 GWVDNLNGPSGLIIATGKGFLRSIKATPMAVADVIPVDTVVNLTIAVGWYTAVHRPKSTL 301
Query: 396 IVHLTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
I H TS +W + +G ++ T ++P P ++ H
Sbjct: 302 IYHSTSGNLNPCNWYK---MGLQVLATIEKIPFESAFRRPNADFTTSNFTTHYWNTVSHR 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
+PA D + L+G KP ++K+ +R+ K + EY+ N+ WE+ +L ++ ++
Sbjct: 359 VPAIIYDFYLRLTGRKPRMLKLMNRLLKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQ 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ D L+ +Y ++ ++ + ++LKE +P A++H+R + + + T F+ I
Sbjct: 419 RVFNFDVRQLNWLEYIENYVLGVKKYLLKEDLAGIPKAKQHLRRLRNIHYLFNTALFLII 478
Query: 574 LYTLSSYSETLRNLFQVFFNIVQY 597
L + S+ RN V+F IV +
Sbjct: 479 WRLLIARSQMARN---VWFFIVSF 499
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 158/504 (31%), Positives = 275/504 (54%), Gaps = 10/504 (1%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I + GK++ +TGA+GF+GKVL+EK+ R SP++K +YIL+R K+G+ +QR+ ++ S
Sbjct: 4 IAAFYGGKSILITGATGFMGKVLMEKLFRTSPDLKVVYILVRPKQGQTLQQRVFQILDSK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF +K V + +K+ IS D ++ AI + D + L S +I+ H AAT+RFD+ L+
Sbjct: 64 LFEKVKEV-CPNVHEKIRAISADLNQNDFAISKEDMKELLSHTNIIFHCAATVRFDDHLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ +L +A +M LE F+HISTA+ + K + E YP P +P K+I+ +E
Sbjct: 123 HAVQLNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLKHIDEVVYPCPVEPKKIIDSME 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
+ + +++ + +G++PN+Y YTK L E +VV+ + ++RPSI+ W+EP P
Sbjct: 183 WLDDAIIDEITPKLIGDWPNTYTYTKALGE-VVVQQEGGNLNIAIIRPSIMGATWQEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN+NGP+GL+I AGKG +R++ AD +P D +N W +
Sbjct: 242 GWVDNLNGPSGLIIAAGKGFLRSIRATPMAVADLIPADTVVNLTLAVGWYTAVHRPKSTL 301
Query: 396 IVHLTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+ H TS +W + +G ++ T ++P P +N + H
Sbjct: 302 VYHCTSGNLNPCNWGK---MGLQVLATFEKIPFERAFRRPNADFTTNNITTHYWNAVSHR 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
PA D + L+G KP + K+ +R+ + + EY+ N WE+ +L ++ ++
Sbjct: 359 APAIIYDFYLRLTGRKPRMTKLMNRLLRTLSMLEYFVNRSWEWSTYNTEMLMSELSPEDQ 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ D L+ +Y ++ ++ + ++LKE +P A++H++ + + + T F+
Sbjct: 419 RVFNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPEAKQHLKRLRNIHYLFNTALFLIA 478
Query: 574 LYTLSSYSETLRNLFQVFFNIVQY 597
L + S+ RN V+F IV +
Sbjct: 479 WRLLIARSQVARN---VWFFIVSF 499
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 614 | ||||||
| 328706792 | 559 | PREDICTED: putative fatty acyl-CoA reduc | 0.842 | 0.924 | 0.675 | 0.0 | |
| 156551579 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.815 | 0.969 | 0.575 | 0.0 | |
| 332021355 | 544 | Putative fatty acyl-CoA reductase [Acrom | 0.804 | 0.908 | 0.590 | 0.0 | |
| 350423751 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.807 | 0.959 | 0.593 | 0.0 | |
| 340722988 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.807 | 0.959 | 0.595 | 1e-180 | |
| 383858922 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.806 | 0.957 | 0.584 | 1e-177 | |
| 298402913 | 525 | fatty-acyl CoA reductase 3 [Ostrinia nub | 0.819 | 0.958 | 0.567 | 1e-176 | |
| 242012549 | 521 | conserved hypothetical protein [Pediculu | 0.832 | 0.980 | 0.559 | 1e-173 | |
| 66547347 | 516 | PREDICTED: putative fatty acyl-CoA reduc | 0.802 | 0.955 | 0.566 | 1e-171 | |
| 298569765 | 516 | putative fatty acyl-CoA reductase [Apis | 0.802 | 0.955 | 0.564 | 1e-171 |
| >gi|328706792|ref|XP_001949683.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/517 (67%), Positives = 438/517 (84%)
Query: 80 YKPPVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139
YKPPVL +E +LPDR+ +TF GKT+F+TG SGFLGKVL+EK+LRK P++++IY+L+R K
Sbjct: 19 YKPPVLPDELSHLPDRVSKTFVGKTIFITGGSGFLGKVLIEKLLRKCPDIERIYLLLRTK 78
Query: 140 KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVD 199
KG N +QR+E +F+S LF+ LK + G ++++KV PI+GD LAI ESDR+LLA V
Sbjct: 79 KGSNPKQRVETIFSSVLFDYLKELRGVEVLNKVYPIAGDVSEPNLAINESDRRLLADTVQ 138
Query: 200 IMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEK 259
I+ H AATIRFDEALKKAVLLNTRGTKM+L LAKEMK+L++FV++ST+YCHL+EKVL+EK
Sbjct: 139 IVYHAAATIRFDEALKKAVLLNTRGTKMVLELAKEMKNLQVFVYVSTSYCHLEEKVLFEK 198
Query: 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCL 319
YPPP DPHK+I+ +EM+ E VE +KE LG FPNSYA+TKCLSE LVVE + G+PC+
Sbjct: 199 AYPPPADPHKIIQSMEMLDEPFVETISKEILGSFPNSYAFTKCLSEHLVVEQIEAGLPCI 258
Query: 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGI 379
+ RPSI+IP+W+EPLPGWTDNINGPTGLLIGAGKGVIRTMFC N GYAD+LPVDIT+NGI
Sbjct: 259 IARPSIVIPIWKEPLPGWTDNINGPTGLLIGAGKGVIRTMFCHNQGYADYLPVDITVNGI 318
Query: 380 FVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKS 439
+ W Y+ + ++I HLTSSQEW+V+WQEIIDIGKSIVTTEVPLNG VWYPGGSMKS
Sbjct: 319 ILFTWNYIGNNDTTRTICHLTSSQEWRVTWQEIIDIGKSIVTTEVPLNGAVWYPGGSMKS 378
Query: 440 NRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNE 499
++L+H ICV F H IPAYFLDA+I+LSGNKPCLV+IQDRINKGFEVFEYYANNQWEFRNE
Sbjct: 379 SKLVHNICVFFLHTIPAYFLDAVIYLSGNKPCLVRIQDRINKGFEVFEYYANNQWEFRNE 438
Query: 500 YVHVLRKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMY 559
+VH +R+IMN+RE+ EYK+DG D+DI+ YF+DCIMA RI+ILKE P+TLP AR HM+IMY
Sbjct: 439 HVHYMRRIMNQREKFEYKVDGNDMDIRNYFRDCIMAARIYILKETPDTLPRARIHMKIMY 498
Query: 560 WVDVIAKTLFFVFILYTLSSYSETLRNLFQVFFNIVQ 596
+VD+IAK LFF +L+T+ +S+T+ + + +N+V+
Sbjct: 499 YVDIIAKILFFSLLLWTIFKWSDTIIAIGLLLYNLVR 535
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156551579|ref|XP_001601970.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/504 (57%), Positives = 386/504 (76%), Gaps = 3/504 (0%)
Query: 86 SEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNAR 145
S +LPDRIG TF G+ + +TG +GFLGKVL+EK LR P + ++Y+L+R KKGK+ +
Sbjct: 3 STSLEDLPDRIGATFKGRDILITGGTGFLGKVLVEKFLRCLPEINQLYLLVRPKKGKDPK 62
Query: 146 QRIEELFASPLFNLLKSVHG-QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHG 204
R++++F S LF +K + G + + KV ISGD L I DR+LL + I+ HG
Sbjct: 63 HRLDDIFNSALFEKVKELRGVEGLKKKVTIISGDVSHPGLGISAEDRKLLCERISIVYHG 122
Query: 205 AATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPP 264
AAT+RFDE LK+AV+LNTRGTK ML LAK+MK LELF HISTAYCHL+EKVL EKPYPPP
Sbjct: 123 AATVRFDELLKRAVILNTRGTKQMLDLAKDMKKLELFAHISTAYCHLEEKVLGEKPYPPP 182
Query: 265 TDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPS 324
DPHK+I+ VE M ++ VE + LG+ PN+YA+TK LSEGLV E MN+ +P ++LRPS
Sbjct: 183 ADPHKIIKCVEWMEDEVVEAMTDKILGDLPNTYAFTKALSEGLVEEVMND-IPAIILRPS 241
Query: 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIW 384
I+IP+W+EP+ GWTDNINGPTGLLIGAGKGVIRTM+C+ GYAD++PVDI +N I W
Sbjct: 242 IVIPIWKEPVAGWTDNINGPTGLLIGAGKGVIRTMYCNENGYADYVPVDIGVNAILAVTW 301
Query: 385 AYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLH 444
Y+ K+H + + +LTSS E++VSW EII+ G+ I T +VPLNG VWYPGGSMK +RL+H
Sbjct: 302 NYIGNKQHEKRVYNLTSSSEFKVSWAEIIERGRRI-TEKVPLNGVVWYPGGSMKKSRLMH 360
Query: 445 QICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVL 504
ICV+FFHMIPAY +D +IFL+G+KP + ++ RI KGFEVFEYYANNQW+F N + L
Sbjct: 361 NICVLFFHMIPAYLIDMLIFLAGHKPIMCRVHRRIQKGFEVFEYYANNQWDFENANIAEL 420
Query: 505 RKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVI 564
R + N++E++ Y++ G+D+D+ YF++CI A R+FIL E PETLPAARRHMR+MYWVD++
Sbjct: 421 RSLQNEKEKVLYQLHGDDMDLDNYFENCIRAARVFILNEPPETLPAARRHMRVMYWVDIV 480
Query: 565 AKTLFFVFILYTLSSYSETLRNLF 588
K LFFV ++YT++ +S++ + L
Sbjct: 481 TKILFFVLLIYTMACWSDSFKALL 504
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332021355|gb|EGI61729.1| Putative fatty acyl-CoA reductase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/498 (59%), Positives = 387/498 (77%), Gaps = 4/498 (0%)
Query: 93 PDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELF 152
PDR+ E G+ + +TG +GFLGKVL+EKILR P+V+ IY+L+R KKGK+ +QR++E+F
Sbjct: 38 PDRVAEILAGRKILVTGGTGFLGKVLIEKILRCLPDVEHIYMLVRPKKGKDPKQRLDEIF 97
Query: 153 ASPLFNLLKSVHGQKIIDK-VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFD 211
SPLF +++ G ++K V I+GD L + DR++L V+I+ HGAAT+RFD
Sbjct: 98 NSPLFEKVRTQRGLSALEKAVTAINGDVALPGLGLSPEDRKILIENVNIVYHGAATVRFD 157
Query: 212 EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLI 271
E LK+AVLLNTRGTK+M+ LAKEMKHL +F+HISTAYCHL+E++L EK YPPP DPH++I
Sbjct: 158 ELLKRAVLLNTRGTKLMIELAKEMKHLLVFLHISTAYCHLEEQILREKTYPPPADPHQVI 217
Query: 272 ERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWR 331
+ VE M +D VE + LG+ PN+YA+TK LSE LV E+M++ +P ++LRPS+IIP+W+
Sbjct: 218 KCVEWMDDDVVEAMTDKILGKLPNTYAFTKALSESLVEESMSH-IPAIILRPSVIIPIWK 276
Query: 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391
EP+PGWTDNINGPTGLLIGAGKGVIRTMFC+ GYAD+LPVDI +NG+ +A W ++ K+
Sbjct: 277 EPIPGWTDNINGPTGLLIGAGKGVIRTMFCNENGYADYLPVDIAVNGLLLATWNFIYFKD 336
Query: 392 HRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFF 451
+ + ++TSS E +++W EII G+ I T +PLNG WYPGGS+K +RL+H IC++FF
Sbjct: 337 EKH-VFNMTSSAEIKITWAEIIKRGRKI-TERIPLNGVAWYPGGSLKKSRLMHNICILFF 394
Query: 452 HMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKR 511
HMIPAY +DA +FL+G KP + IQ RINKGFEVFEYYANNQW+F N+YV LR+ +N
Sbjct: 395 HMIPAYIIDAFLFLAGYKPIMCHIQRRINKGFEVFEYYANNQWDFENKYVEELREKINST 454
Query: 512 ERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFV 571
E Y++ G DLDI KYF+DCI A RI+ILKEMPETLPAARRH+R+MYWVDV K LFFV
Sbjct: 455 ECKNYQVHGNDLDIDKYFEDCIRAARIYILKEMPETLPAARRHLRVMYWVDVFTKILFFV 514
Query: 572 FILYTLSSYSETLRNLFQ 589
FI+Y L+S+SE+ R L
Sbjct: 515 FIIYLLASWSESFRTLLS 532
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350423751|ref|XP_003493580.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/499 (59%), Positives = 384/499 (76%), Gaps = 3/499 (0%)
Query: 91 NLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEE 150
++PDRI ETF G+ + +TG +GFLGKV++EK+LR N K+IY+L+R KK K+ + R+EE
Sbjct: 8 DIPDRIAETFEGQNILITGGTGFLGKVVIEKLLRCVQNTKQIYMLIRTKKEKDPKHRLEE 67
Query: 151 LFASPLFNLLKSVHGQKIIDK-VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIR 209
+F SPLF +K G +++ K V +SGD L I DR++L +++I+ H AAT+R
Sbjct: 68 IFNSPLFEKVKRQRGAEVLKKSVTVVSGDVSLPGLGISSEDRKMLCEKINIVYHAAATVR 127
Query: 210 FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHK 269
FDE LKKAVLLNTRGTK ML LAKEMKHL+LF HISTAYCHL+EK+L EKPYPPP DPHK
Sbjct: 128 FDELLKKAVLLNTRGTKQMLELAKEMKHLKLFAHISTAYCHLEEKILREKPYPPPADPHK 187
Query: 270 LIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPV 329
+I+ VE M +D VE + LG PN+YA+TK LSEGLV EAM + +P ++LRPSI+IP+
Sbjct: 188 IIKCVEWMDDDVVEAMTDKILGHLPNTYAFTKALSEGLVEEAMPH-IPAIILRPSIVIPI 246
Query: 330 WREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ 389
W+EP+PGWTDNINGPTGLLIGAGKGVIRTM+C+++ YAD+LPVDI +N I + W ++
Sbjct: 247 WKEPVPGWTDNINGPTGLLIGAGKGVIRTMYCNDSSYADYLPVDIAVNAILASSWNFIYC 306
Query: 390 KEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVI 449
K+H + + +LTSS E++VSW EII G+ I T +VPLNG VWYPGGSMK +RL+H ICV+
Sbjct: 307 KDHEKRVYNLTSSSEFKVSWAEIIARGRKI-TEKVPLNGVVWYPGGSMKKSRLMHNICVL 365
Query: 450 FFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMN 509
FHMIPAY +D +IFL+G KP + ++Q RI KGFEVFEYYANNQW+F N + LR +N
Sbjct: 366 LFHMIPAYLIDGLIFLAGYKPIMCRVQRRIQKGFEVFEYYANNQWDFDNSNIFELRNKLN 425
Query: 510 KRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLF 569
E +Y++ G+D+DI YF+ CI A RI+IL E PETLPAARRH+RIMYWVDVI K LF
Sbjct: 426 PVEYKKYQLHGKDMDIDAYFETCIRAARIYILNEPPETLPAARRHLRIMYWVDVITKILF 485
Query: 570 FVFILYTLSSYSETLRNLF 588
FV ++Y ++S+SE+ R L
Sbjct: 486 FVLLIYMVASWSESFRALL 504
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722988|ref|XP_003399881.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 297/499 (59%), Positives = 383/499 (76%), Gaps = 3/499 (0%)
Query: 91 NLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEE 150
++PDRI ETF G+ + +TG +GFLGKV++EK+LR N K+IY+L+R KK K+ + R+EE
Sbjct: 8 DIPDRIAETFEGQNILITGGTGFLGKVVIEKLLRCVQNTKQIYMLIRTKKEKDPKHRLEE 67
Query: 151 LFASPLFNLLKSVHGQKIIDK-VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIR 209
+F SPLF +K G +I+ K V ISGD L I DR++L +++I+ H AAT+R
Sbjct: 68 IFNSPLFEKVKRQRGAEILKKSVTVISGDVSLPGLGISSEDRKMLCEKINIVYHAAATVR 127
Query: 210 FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHK 269
FDE LKKAVLLNTRGTK ML LAKEMKHL+LF HISTAYCHL+EK+L EKPYPPP DPHK
Sbjct: 128 FDELLKKAVLLNTRGTKQMLELAKEMKHLKLFAHISTAYCHLEEKILREKPYPPPADPHK 187
Query: 270 LIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPV 329
+I+ VE M +D VE + LG PN+YA+TK LSE LV EAM + +P ++LRPSI+IP+
Sbjct: 188 IIKCVEWMDDDVVEAMTDKILGHLPNTYAFTKALSESLVEEAMPH-IPAIILRPSIVIPI 246
Query: 330 WREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ 389
W+EP+PGWTDNINGPTGLLIGAGKGVIRTM+C+++ YAD+LPVDI +N I + W ++
Sbjct: 247 WKEPVPGWTDNINGPTGLLIGAGKGVIRTMYCNDSSYADYLPVDIAVNAILASSWNFIYC 306
Query: 390 KEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVI 449
K+H + + +LTSS E++VSW EII G+ I T +VPLNG VWYPGGSMK +RL+H ICV+
Sbjct: 307 KDHEKRVYNLTSSSEFKVSWAEIIARGRRI-TEKVPLNGVVWYPGGSMKKSRLMHNICVL 365
Query: 450 FFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMN 509
FHMIPAY +D +IFL+G KP + ++Q RI KGFEVFEYYANNQW+F N + LR +N
Sbjct: 366 LFHMIPAYLIDGLIFLAGYKPIMCRVQRRIQKGFEVFEYYANNQWDFDNSNIFELRNKLN 425
Query: 510 KRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLF 569
E +Y++ G+D+DI YF+ CI A RI+IL E PETLPAARRH+RIMYWVDVI K LF
Sbjct: 426 PVEYEKYQLHGKDMDIDAYFETCIRAARIYILNEPPETLPAARRHLRIMYWVDVITKILF 485
Query: 570 FVFILYTLSSYSETLRNLF 588
FV ++Y ++S+SE+ R L
Sbjct: 486 FVLLIYMVASWSESFRALL 504
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383858922|ref|XP_003704948.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 291/498 (58%), Positives = 381/498 (76%), Gaps = 3/498 (0%)
Query: 92 LPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEEL 151
+PDRI ETF + + +TG +GFLGKV++EK LR P +++Y+L+R KK K+ + RIEE+
Sbjct: 9 IPDRILETFKDQNILITGGTGFLGKVIVEKFLRCIPVTQQLYLLVRSKKNKDPKHRIEEI 68
Query: 152 FASPLFNLLKSVHGQKIIDK-VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRF 210
F SPLF +K G + + K V ++GD L + DR++L +++I+ HGAAT+RF
Sbjct: 69 FNSPLFEQVKQKRGMEELHKAVTVVNGDVSLPGLGLSPEDRRMLCEKINIVYHGAATVRF 128
Query: 211 DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKL 270
DE LKKAVLLNTRGTK ML LAKEMKHL+LF HISTAYCHL+EK+L EKPYPPP DPHK+
Sbjct: 129 DELLKKAVLLNTRGTKQMLELAKEMKHLKLFAHISTAYCHLEEKILGEKPYPPPADPHKI 188
Query: 271 IERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVW 330
I+ VE M ++ VE + LG+ PN+YA+TK LSEGLV EAM+ +P ++LRPSI+IPVW
Sbjct: 189 IKCVEWMDDEVVEAMTDKILGDLPNTYAFTKALSEGLVNEAMSQ-IPAIILRPSIVIPVW 247
Query: 331 REPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQK 390
+EP+PGWTDNINGPTGLLI AGKGVIRTM+C+ GYAD+LPVDI +N I + W ++ K
Sbjct: 248 KEPIPGWTDNINGPTGLLIAAGKGVIRTMYCNENGYADYLPVDIAVNVILASSWNFIYLK 307
Query: 391 EHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIF 450
+H + + +LTSS E++VSW EII G+ I T +VPLNG VWYPGGSMK +RL+H ICV
Sbjct: 308 DHEKRVYNLTSSSEFKVSWAEIIARGRKI-TEKVPLNGVVWYPGGSMKKSRLIHNICVFL 366
Query: 451 FHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNK 510
FH IPAY +DA+IFL+G KP + ++Q RI KGFEVFEYYANNQW+F N+ ++ +R+ +N
Sbjct: 367 FHTIPAYLIDALIFLAGYKPIMCRVQRRIQKGFEVFEYYANNQWDFENKNIYEIREKLNP 426
Query: 511 RERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFF 570
E +Y+I GED+DI YF+ CI A RI+IL E PETLPAARRH+++MYWVDVI K +FF
Sbjct: 427 IEYKKYQIHGEDMDIDAYFETCIRAARIYILNEPPETLPAARRHLKLMYWVDVITKIVFF 486
Query: 571 VFILYTLSSYSETLRNLF 588
+ ++Y L+S+SE R L
Sbjct: 487 ILLIYVLASWSECFRALL 504
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|298402913|gb|ADI82776.1| fatty-acyl CoA reductase 3 [Ostrinia nubilalis] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/506 (56%), Positives = 382/506 (75%), Gaps = 3/506 (0%)
Query: 86 SEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNAR 145
+ E + DRI T+ G ++F+TG +GF+GKVL+EK+LRK +++IY+L+R KKGK +
Sbjct: 8 ASEVDAMTDRIAATYAGLSVFVTGGTGFMGKVLIEKLLRKCTEIRQIYLLVRPKKGKTPK 67
Query: 146 QRIEELFASPLFNLLKSVHG--QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIH 203
QR+EELF LF L+++ G + I++KV ISGD +LA+ E+DRQLL VDI+IH
Sbjct: 68 QRLEELFQGELFEQLRNLRGGVEPILEKVTLISGDVSEPDLAMSEADRQLLIENVDIIIH 127
Query: 204 GAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPP 263
AATIRFDE LKKAVLLN RGTK+++ LAK K L+LF+HISTAYCHL EK+L EKPYPP
Sbjct: 128 AAATIRFDEELKKAVLLNVRGTKLIVELAKTCKKLKLFIHISTAYCHLHEKLLEEKPYPP 187
Query: 264 PTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGM-PCLMLR 322
P DPH++I+ +E M E+TV + + L + PNSYA+TK L E +VVEAM + P ++LR
Sbjct: 188 PADPHQIIQAMEWMDEETVAQLTPKLLDKLPNSYAFTKALGEAVVVEAMEADLIPAMILR 247
Query: 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVA 382
PSI+IP+W+EPLPGWTDNINGPTGLLIGAGKGVIRTM+C + YAD+LPVD+ INGI ++
Sbjct: 248 PSIVIPIWQEPLPGWTDNINGPTGLLIGAGKGVIRTMYCKSNSYADYLPVDVFINGIMIS 307
Query: 383 IWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRL 442
W Y++ + + +V+ TSS E +V+W E+ID G+ I+ VPLNG VWYPGGSMK +RL
Sbjct: 308 AWNYITYGDKKSRVVNFTSSAEIKVTWLEMIDAGREIIMNRVPLNGVVWYPGGSMKHSRL 367
Query: 443 LHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVH 502
H IC +FFH IPA +D ++F G KP L+++ RI+KGFEVFEYY NNQW+F+++
Sbjct: 368 YHNICALFFHWIPAILIDILLFCLGYKPILMRVHRRISKGFEVFEYYTNNQWDFKSDIAQ 427
Query: 503 VLRKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVD 562
+R +N RER +YK+D LDI KYF+DCI A RI+ILKE +TLPAARRHMR+MYWVD
Sbjct: 428 TVRLRLNTRERRDYKVDAVGLDIMKYFEDCIKAARIYILKEYDDTLPAARRHMRVMYWVD 487
Query: 563 VIAKTLFFVFILYTLSSYSETLRNLF 588
VIA+ LF+ ILY +S + ++ ++F
Sbjct: 488 VIAQCLFWGLILYWISGWFPSITSVF 513
|
Source: Ostrinia nubilalis Species: Ostrinia nubilalis Genus: Ostrinia Family: Crambidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242012549|ref|XP_002426995.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511224|gb|EEB14257.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/515 (55%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 69 VNNMNVPYETFYKPPVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPN 128
+ N +E Y+ +LPDRI + F GKT+F+TG +GF+GKVL+EKILR
Sbjct: 1 MGNGESAFEKEYQKRYEGVNIEDLPDRIADVFNGKTIFITGGTGFMGKVLVEKILRNCCG 60
Query: 129 VKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQ-KIIDKVLPISGDAEADELAIK 187
+KK+Y+L+R KKG + + R++++F SPLF+ +K +HG+ KI K+ I GD +L +
Sbjct: 61 LKKMYLLLRNKKGVDPKDRLQKIFESPLFDKVKEIHGEEKIKRKIAYIGGDVSLPDLGLT 120
Query: 188 ESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247
ESDR+LL EV+I+ H AATIRFDE LKKAVLLNTRGTK++L LAK+MK+LELF H+STA
Sbjct: 121 ESDRKLLIDEVNIVFHLAATIRFDEPLKKAVLLNTRGTKLVLELAKQMKNLELFHHMSTA 180
Query: 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGL 307
YCHL++KVL EK YPP +PH LI+ +E M +D E K+ LG+ PN+YA+TK LSEG+
Sbjct: 181 YCHLEQKVLEEKSYPPHCNPHDLIKTMEWMDDDVAESLTKKVLGKCPNTYAFTKNLSEGI 240
Query: 308 VVEAMNNG--MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTG 365
+VEA+ + P ++ RPSI++P+W+EPLPGWTDNINGPTGLLIGAGKGVIRTM+C G
Sbjct: 241 IVEAIESDPPFPAVISRPSIVVPIWKEPLPGWTDNINGPTGLLIGAGKGVIRTMYCKQEG 300
Query: 366 YADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVP 425
YAD+LPVDI +NGI V W ++S K++ + H TSS+E ++SW+E+I +G+ I T E+P
Sbjct: 301 YADYLPVDIAVNGILVVTWNFISNKDYNRRYFHFTSSEEIRISWEELILLGRKI-TEEIP 359
Query: 426 LNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEV 485
LNG VWYPGGSMK ++L H ICV+ FH IPAY +D ++F G KP + ++Q RI KGFEV
Sbjct: 360 LNGVVWYPGGSMKKSKLFHNICVVLFHYIPAYIIDTLLFFLGYKPIMCRVQKRITKGFEV 419
Query: 486 FEYYANNQWEFRNEYVHVLRKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMP 545
FEYYANNQW+F N +V+ R IMN +ER YK+DG LD+++YF+ CI+A R +IL E P
Sbjct: 420 FEYYANNQWQFMNTHVYYARSIMNPKERERYKVDGLGLDVEEYFKSCILAARAYILNEAP 479
Query: 546 ETLPAARRHMRIMYWVDVIAKTLFFVFILYTLSSY 580
ETLPAARRH++IMYWVD+ K F F+ Y +S Y
Sbjct: 480 ETLPAARRHLKIMYWVDIFTKLAFAFFLFYFVSKY 514
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66547347|ref|XP_624493.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 281/496 (56%), Positives = 373/496 (75%), Gaps = 3/496 (0%)
Query: 94 DRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFA 153
DRI E+F + + +TG +GFLGKV++EK LR P++K+IY+L+R K K+ + R+EE+F
Sbjct: 6 DRIEESFKNQNILITGGTGFLGKVIVEKFLRCLPDIKQIYLLIRTKHEKDPKYRLEEIFN 65
Query: 154 SPLFNLLKSVHGQKIIDK-VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDE 212
SPLF +K G + + K V I+GD L++ DR++L +++I+ H AA++RFDE
Sbjct: 66 SPLFEKVKKQRGAETLKKSVTVINGDMTLPGLSLSLEDRKMLCEKINIVYHAAASVRFDE 125
Query: 213 ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIE 272
LKKAVLLNTRGTK ML LAKEMKHL+LF +ISTAYCHL+EK+L EKPYPPP DPHK+I+
Sbjct: 126 MLKKAVLLNTRGTKEMLELAKEMKHLKLFAYISTAYCHLEEKILEEKPYPPPIDPHKIIK 185
Query: 273 RVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWRE 332
VE M +D VE + L FPN+YA+TK LSE LV EAM +P ++LRPSI+IP+W+E
Sbjct: 186 CVEWMDDDVVEAMTGKILAHFPNTYAFTKALSEALVEEAMPY-IPAIILRPSIVIPIWKE 244
Query: 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392
PLPGWTDNINGPTG+LIGAGKGV+RTM+C+ + YADFLPVDI +N I + W ++ K+H
Sbjct: 245 PLPGWTDNINGPTGILIGAGKGVLRTMYCNGSSYADFLPVDIAVNAILASSWNFIYCKDH 304
Query: 393 RQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFH 452
+ + HLTSS E++V W+EII G+ I T VPLNG VWYPGGS+K +RL+H ICV FFH
Sbjct: 305 EKRVYHLTSSNEFKVPWEEIIARGRKI-TERVPLNGVVWYPGGSIKKSRLMHNICVFFFH 363
Query: 453 MIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRE 512
+IPAYF+DA+IFL+G KP + ++Q RI KGFEVFEYY NNQW+F N +R +N E
Sbjct: 364 IIPAYFIDALIFLAGYKPIMCRVQRRIQKGFEVFEYYTNNQWDFDNSNFMEVRSKLNPVE 423
Query: 513 RIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVF 572
+Y++ G+D+DI YF+ CI A RI+IL E PETLPAARRH+RIMYW+DVI K F +
Sbjct: 424 YAKYQVHGDDMDIDAYFEACIRAARIYILNEPPETLPAARRHLRIMYWIDVITKIFFLIL 483
Query: 573 ILYTLSSYSETLRNLF 588
++Y +S++E+ + L
Sbjct: 484 LIYIFASWNESFKALL 499
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|298569765|gb|ADI87411.1| putative fatty acyl-CoA reductase [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 280/496 (56%), Positives = 372/496 (75%), Gaps = 3/496 (0%)
Query: 94 DRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFA 153
DRI E+F + + +TG +GFLGKV++EK LR P++K+IY+L+R K K+ + R+ E+F
Sbjct: 6 DRIEESFKNQNILITGGTGFLGKVIVEKFLRCLPDIKQIYLLIRTKHEKDPKYRLGEIFN 65
Query: 154 SPLFNLLKSVHGQKIIDK-VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDE 212
SPLF +K G + + K V I+GD L++ DR++L +++I+ H AA++RFDE
Sbjct: 66 SPLFEKVKKQRGAETLKKSVTVINGDMTLPGLSLSLEDRKMLCEKINIVYHAAASVRFDE 125
Query: 213 ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIE 272
LKKAVLLNTRGTK ML LAKEMKHL+LF +ISTAYCHL+EK+L EKPYPPP DPHK+I+
Sbjct: 126 MLKKAVLLNTRGTKEMLELAKEMKHLKLFAYISTAYCHLEEKILEEKPYPPPIDPHKIIK 185
Query: 273 RVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWRE 332
VE M +D VE + L FPN+YA+TK LSE LV EAM +P ++LRPSI+IP+W+E
Sbjct: 186 CVEWMDDDVVEAMTGKILAHFPNTYAFTKALSEALVEEAMPY-IPAIILRPSIVIPIWKE 244
Query: 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392
PLPGWTDNINGPTG+LIGAGKGV+RTM+C+ + YADFLPVDI +N I + W ++ K+H
Sbjct: 245 PLPGWTDNINGPTGILIGAGKGVLRTMYCNGSSYADFLPVDIAVNAILASSWNFIYCKDH 304
Query: 393 RQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFH 452
+ + HLTSS E++V W+EII G+ I T VPLNG VWYPGGS+K +RL+H ICV FFH
Sbjct: 305 EKRVYHLTSSNEFKVPWEEIIARGRKI-TERVPLNGVVWYPGGSIKKSRLMHNICVFFFH 363
Query: 453 MIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRE 512
+IPAYF+DA+IFL+G KP + ++Q RI KGFEVFEYY NNQW+F N +R +N E
Sbjct: 364 IIPAYFIDALIFLAGYKPIMCRVQRRIQKGFEVFEYYTNNQWDFDNSNFMEVRSKLNPVE 423
Query: 513 RIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVF 572
+Y++ G+D+DI YF+ CI A RI+IL E PETLPAARRH+RIMYW+DVI K F +
Sbjct: 424 YAKYQVHGDDMDIDAYFEACIRAARIYILNEPPETLPAARRHLRIMYWIDVITKIFFLIL 483
Query: 573 ILYTLSSYSETLRNLF 588
++Y +S++E+ + L
Sbjct: 484 LIYIFASWNESFKALL 499
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 614 | ||||||
| FB|FBgn0033464 | 517 | CG1441 [Drosophila melanogaste | 0.791 | 0.940 | 0.521 | 4.8e-142 | |
| FB|FBgn0034145 | 625 | CG5065 [Drosophila melanogaste | 0.825 | 0.811 | 0.357 | 3.7e-96 | |
| FB|FBgn0039131 | 531 | CG12268 [Drosophila melanogast | 0.765 | 0.885 | 0.395 | 5.5e-93 | |
| FB|FBgn0043792 | 506 | CG30427 [Drosophila melanogast | 0.804 | 0.976 | 0.36 | 1.2e-90 | |
| RGD|1306647 | 515 | Far1 "fatty acyl CoA reductase | 0.794 | 0.947 | 0.357 | 4.3e-86 | |
| UNIPROTKB|Q66H50 | 515 | Far1 "Fatty acyl-CoA reductase | 0.794 | 0.947 | 0.357 | 4.3e-86 | |
| MGI|MGI:1914670 | 515 | Far1 "fatty acyl CoA reductase | 0.793 | 0.945 | 0.348 | 8.9e-86 | |
| UNIPROTKB|E2R4R9 | 514 | FAR1 "Uncharacterized protein" | 0.793 | 0.947 | 0.350 | 1.1e-85 | |
| UNIPROTKB|A5PJQ0 | 515 | FAR1 "Uncharacterized protein" | 0.793 | 0.945 | 0.348 | 3.8e-85 | |
| ZFIN|ZDB-GENE-060503-367 | 515 | si:dkey-97m3.1 "si:dkey-97m3.1 | 0.796 | 0.949 | 0.354 | 3.8e-85 |
| FB|FBgn0033464 CG1441 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
Identities = 255/489 (52%), Positives = 355/489 (72%)
Query: 91 NLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEE 150
N DRI E F G++LF+TG +GFLGKVL+EK+LR +K+IY+L+R KKGK+ ++RI++
Sbjct: 23 NEVDRIAECFKGRSLFITGGTGFLGKVLVEKLLRSCGGLKRIYLLIRPKKGKDPQERIKD 82
Query: 151 LFASPLFNLLKSVHGQK-IIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIR 209
+F + LF+ +K + G++ I+ +V+ I+GD + L I E D + L EV I+ H AAT+R
Sbjct: 83 IFQNVLFDQVKQMRGEEHILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHCAATVR 142
Query: 210 FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHK 269
FDE L+ AV +NTRGTK ML LA +KHL+ F + STAYCHL K LYEKPY PP DPHK
Sbjct: 143 FDEPLRNAVFMNTRGTKYMLELALTLKHLDFFAYCSTAYCHLHVKTLYEKPYDPPADPHK 202
Query: 270 LIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPV 329
+++ E +++D V ++ LG PN+YAYTK L+E LVVE +P ++LRPSI+IP+
Sbjct: 203 VMQACEWLTDDEVATIERKVLGAIPNTYAYTKSLAEALVVEKFEE-LPAVILRPSIVIPI 261
Query: 330 WREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ 389
W+EP+PGWTDNINGPTGLLIGAGKGVIRTM+C+++GY DFLPVD+ +NGI VA W ++
Sbjct: 262 WKEPIPGWTDNINGPTGLLIGAGKGVIRTMYCNSSGYGDFLPVDVAVNGILVASWRNITA 321
Query: 390 KEHRQS-IVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICV 448
+ + + H+TSS + +VSW EII++G+ ++ +VPLNG WYPGGSMKSN +H IC+
Sbjct: 322 GTDKTNRVAHMTSSNDIKVSWAEIIELGRWVIENKVPLNGVAWYPGGSMKSNYWVHFICM 381
Query: 449 IFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIM 508
+ F +PA F+DA++++ P L ++Q+RI KGFEVFEYYANN W F N LRK+M
Sbjct: 382 VLFQWMPALFVDALLWILRYPPVLCRVQNRIYKGFEVFEYYANNVWNFDNSEAVKLRKLM 441
Query: 509 NKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTL 568
N +ER Y I+ +LD+ YF +C++ R ILKE E++PAARRHM++M+ VD + K +
Sbjct: 442 NNKERRTYVIEKIELDLIDYFTNCVLCARRLILKESDESIPAARRHMKVMWVVDKVYKGI 501
Query: 569 FFVFILYTL 577
+ ILY L
Sbjct: 502 WIFGILYML 510
|
|
| FB|FBgn0034145 CG5065 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 185/517 (35%), Positives = 300/517 (58%)
Query: 75 PYETFYKPPVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYI 134
PYE F +++ +P I + + G+++F+TG +GF+GKVL+EK+LR P ++ IY+
Sbjct: 105 PYERFR-----ADDTSYVP--IAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYL 157
Query: 135 LMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLL 194
L+R K+G+ R+ EL +PLF L+ K + KV+PISGD ++EL I E D+ LL
Sbjct: 158 LIRPKRGQEVSARLTELLNAPLFESLRQ-EKPKELSKVIPISGDITSEELGISEKDQNLL 216
Query: 195 ASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK 254
V ++ H AAT++FDE LK +V +N GTK ++ L M L+ +H+STAYC+
Sbjct: 217 CRNVSVVFHSAATVKFDEKLKLSVTINMLGTKRLVELCHRMLSLDALIHVSTAYCNCDRT 276
Query: 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNN 314
+ E Y PP +P +I + + ED +++ +G+ PN+Y +TK L+E ++++ N
Sbjct: 277 DVSEVIYAPPYNPDDIISLINWLPEDILDQLTPRLIGKRPNTYTFTKALAEHMLLKEAGN 336
Query: 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDI 374
+P ++RPSI+ EP GW DN NGPTGL+ KG+ RTM C+ AD +PVDI
Sbjct: 337 -LPVAIVRPSIVTASLNEPFAGWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDI 395
Query: 375 TINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPG 434
IN + A W ++K + I + + Q + W E + + V PL GC+WYP
Sbjct: 396 VINLMIAAAWRTATRKSNNLLIYNCCTGQRNPIIWSEFVKHAMTSVRKH-PLEGCLWYPT 454
Query: 435 GSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQW 494
G ++ NR ++ + I H +PAY LD + + G KP +V +Q++I K E EY+A QW
Sbjct: 455 GDLRMNRPMNTLNCIAKHFLPAYILDGVARIMGKKPFVVNVQNKIAKAVECLEYFATRQW 514
Query: 495 EFRNEYVHVLRKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRH 554
F+++ VH L ++ ++R + D ++ KY + ++ R F+ K+ PE+LPA+R+
Sbjct: 515 RFKDDNVHALLHTLSPKDREIFVFDVRHINWDKYVERYVLGFREFLFKQRPESLPASRKR 574
Query: 555 MRIMYWVDVIAKTLFFVFILYTLSSYSETLRNLFQVF 591
M +Y++ + K + + L S S+ L +L+ F
Sbjct: 575 MLRLYYLHQLTKLVAVLLTWRFLMSRSKRLNDLWSSF 611
|
|
| FB|FBgn0039131 CG12268 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 191/483 (39%), Positives = 294/483 (60%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I + + KT+ +TGA+GF+GKVL+EK+LR ++ IY+L+R KKG + R E+ F
Sbjct: 15 IAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVRKEQYFKCV 74
Query: 156 LFN-LLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEAL 214
+F LL+ G I+DKV + GD +L + +D LAS V+++ H AA +RFD+ L
Sbjct: 75 IFGKLLEKNPG--IVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPL 132
Query: 215 KKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERV 274
+ V++N GT +L LA++M L+ VH+ST+YC E VL E+ YP P +P +IE V
Sbjct: 133 RPMVMMNVVGTLKVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMV 192
Query: 275 EMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPL 334
E M ++ + + + L PN+YAY+K LSE L+ NN +P ++ RPSI+ EPL
Sbjct: 193 ETMDDEALAEITPKLLNGLPNTYAYSKALSEDLICR-YNNKLPIIITRPSIVTAAIHEPL 251
Query: 335 PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYAD-FLPVDITINGIFVAIW--AYLSQ-K 390
PGW + +NGPTGL+IGA +GVIR+M C N YA +PVD ING+ + + SQ K
Sbjct: 252 PGWIEGVNGPTGLMIGAARGVIRSMHC-NPDYASTVIPVDKAINGMILCGYQRGKASQEK 310
Query: 391 EHRQSIV---HLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQIC 447
++Q+ V +L S + +SW + I+ G+ E PL+ +WYPGGS+K N H C
Sbjct: 311 GNKQTGVEFCNLCISSKALMSWGDSIETGRRFFY-ETPLSFALWYPGGSIKKNYYHHLFC 369
Query: 448 VIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKI 507
VIFFH +PAYF+D + + G KP L+ +Q +++ G ++ +YY +WEFRNE +
Sbjct: 370 VIFFHYLPAYFIDFWLLVFGQKPFLLNVQRKVSMGLKLLQYYTTKRWEFRNERFQEMSSQ 429
Query: 508 MNKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKT 567
++ ++ + ++ + Y + I+ R +IL E +TLP AR+ +R +Y +D ++K
Sbjct: 430 LSLLDQDLFDTSVGQVNWETYISNYIVGMRTYILGESEDTLPQARKVLRRLYILDWVSKV 489
Query: 568 LFF 570
LFF
Sbjct: 490 LFF 492
|
|
| FB|FBgn0043792 CG30427 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 180/500 (36%), Positives = 300/500 (60%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
+ E + KT+F+TGASGF+GKVLLEK+L ++K++ I+ R K+GK R+EE+F P
Sbjct: 8 VQEYYKDKTIFITGASGFMGKVLLEKLLYSCHSLKEVIIICRPKRGKAPETRLEEMFKLP 67
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
+F +K + ++ +V GD D+L + + + +I+ H AAT++ + L+
Sbjct: 68 IFQRIKDERPE-MLKRVTIYQGDVTFDQLGLSGESLKHVTENTNIVFHMAATLKLEGNLR 126
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
A+ +N GT+ L++AKEMK LE F+H+STA+C+ + V+YEK Y P P L+ E
Sbjct: 127 DAIDMNLLGTRRALNVAKEMKQLEAFIHLSTAFCNCDQDVMYEKVYEFPHKPEDLMRLAE 186
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M T++ + L PN+Y Y+K L+E L+V MP ++ RPSI+ P EPLP
Sbjct: 187 WMDVKTLDAITPDLLKPHPNTYTYSKRLAE-LLVRDHYESMPVIIARPSIVTPAVAEPLP 245
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY-LSQKEHRQ 394
GW DN+NGPTG+LIGAGKGVIR+M C+ ++ +PVDI ING+ + + L++K Q
Sbjct: 246 GWVDNMNGPTGVLIGAGKGVIRSMICNGELKSEVIPVDIAINGLILLPYHNSLAEKRPLQ 305
Query: 395 -SIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+ +LT + +W+ I+D+G+ + + P +WYP G+M S++ H IC I F
Sbjct: 306 IPVYNLTVDDAKKRTWKWIMDVGRDL-GIKYPFEVGLWYPDGNMTSSKFYHTICTILFMW 364
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
+PAY +D ++ + G + ++++Q +I G EV +++ W+F++ + + K + +R
Sbjct: 365 LPAYLIDFLLLIFGQRRFMIRVQTKIAVGLEVLQFFTTRSWDFKSTHFEQIYKELGSTDR 424
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+KI+ +D+D +Y + I+ R +++KE +LP +R +R MY +D I KT+ +
Sbjct: 425 RIFKINTDDVDDYEYMKVSILGGRQYVMKEPLTSLPKSRIQLRFMYVLDRICKTMIISGL 484
Query: 574 LYTLSSYSETLRNLFQVFFN 593
LY +S + +LF+ F+
Sbjct: 485 LYWVSQKLRVV-DLFRSVFH 503
|
|
| RGD|1306647 Far1 "fatty acyl CoA reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 177/495 (35%), Positives = 280/495 (56%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +
Sbjct: 4 IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ K++ I+ + +LA+ E D++++ +++ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W Y R
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAW-YSGVNRPRNI 300
Query: 396 IVH-LTSSQEWQVSWQEIID-IGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+V+ T+ W E+ D + S T PLN +P SN L+ H
Sbjct: 301 MVYNCTTGSTNPFHWGEVGDYLNHSFKTN--PLNQVFRHPYVKFYSNNLMLHYWKGVKHT 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
+PA LD + L+G KP ++K R++K EY+ +N W + + V++L +N ++
Sbjct: 359 VPALLLDLALRLTGQKPWMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDK 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ ID L +Y ++ M T+ ++L E LPAAR+H+ + + T+ + I
Sbjct: 419 KTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILI 478
Query: 574 LYTLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 479 WRIFIARSQMARNIW 493
|
|
| UNIPROTKB|Q66H50 Far1 "Fatty acyl-CoA reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 177/495 (35%), Positives = 280/495 (56%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +
Sbjct: 4 IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ K++ I+ + +LA+ E D++++ +++ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W Y R
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAW-YSGVNRPRNI 300
Query: 396 IVH-LTSSQEWQVSWQEIID-IGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHM 453
+V+ T+ W E+ D + S T PLN +P SN L+ H
Sbjct: 301 MVYNCTTGSTNPFHWGEVGDYLNHSFKTN--PLNQVFRHPYVKFYSNNLMLHYWKGVKHT 358
Query: 454 IPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRER 513
+PA LD + L+G KP ++K R++K EY+ +N W + + V++L +N ++
Sbjct: 359 VPALLLDLALRLTGQKPWMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDK 418
Query: 514 IEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFI 573
+ ID L +Y ++ M T+ ++L E LPAAR+H+ + + T+ + I
Sbjct: 419 KTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILI 478
Query: 574 LYTLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 479 WRIFIARSQMARNIW 493
|
|
| MGI|MGI:1914670 Far1 "fatty acyl CoA reductase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 173/496 (34%), Positives = 282/496 (56%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +S
Sbjct: 4 IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSSK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ +K++ I+ + +LA+ E D++++ +++ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W Y R
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAW-YSGVNRPRNI 300
Query: 396 IVH-LTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFH 452
+V+ T+ W E+ +++T PL P ++ SN LL+ + H
Sbjct: 301 MVYNCTTGSTNPFHWGEV---EYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSH 357
Query: 453 MIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRE 512
PA+ D + ++G P ++K R++K EY+ +N W + + V++L +N +
Sbjct: 358 KAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPED 417
Query: 513 RIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVF 572
+ + ID L +Y ++ M T+ ++L E LPAAR+H+ + + T+ +
Sbjct: 418 KKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVIL 477
Query: 573 ILYTLSSYSETLRNLF 588
I + S+ RN++
Sbjct: 478 IWRIFIARSQMARNIW 493
|
|
| UNIPROTKB|E2R4R9 FAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 174/496 (35%), Positives = 282/496 (56%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +
Sbjct: 4 IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVISGK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ +KV+ I+ + +LA+ E D++++ ++I+ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFREKVIAINSELTQPKLALSEEDKEIIIDSINIIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + ++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVAIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W Y R
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAW-YSGVNRPRNI 300
Query: 396 IVH-LTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFH 452
+V+ T+ W E+ +++T PL P ++ SN LL+ + H
Sbjct: 301 MVYNCTTGSTNPFHWGEV---EYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSH 357
Query: 453 MIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRE 512
PA+ D + ++G P ++K R++K EY+ +N W + + V++L +N +
Sbjct: 358 KAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPED 417
Query: 513 RIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVF 572
+ + ID L +Y ++ M T+ ++L E LPAAR+H+ + + T+ +
Sbjct: 418 KKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVIL 477
Query: 573 ILYTLSSYSETLRNLF 588
I + S+ RN++
Sbjct: 478 IWRIFIARSQMARNIW 493
|
|
| UNIPROTKB|A5PJQ0 FAR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 173/496 (34%), Positives = 282/496 (56%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GFLGKVLLEK+LR P V +Y+L+RQK G+ ++R+EE+ +
Sbjct: 4 IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVISGK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ L+ +K++ I+ + +LA+ E D++++ +I+ H AAT+RF+E L+
Sbjct: 64 LFDRLRD-ENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNIIFHCAATVRFNENLR 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
AV LN T+ ++ LA++MK+LE+F+H+STAY + K + E YPPP DP KLI+ +E
Sbjct: 123 DAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M + V + +G+ PN+Y YTK L+E VV+ + +++RPSI+ W+EP P
Sbjct: 183 WMDDGLVNDITPKLIGDRPNTYIYTKALAE-YVVQQEGAKLNVVIVRPSIVGASWKEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+GL I AGKG++RTM N AD +PVD+ +N A W Y R
Sbjct: 242 GWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNMSLAAAW-YSGVNRPRNI 300
Query: 396 IVH-LTSSQEWQVSWQEIIDIGKSIVTT--EVPLNGCVWYPGGSMKSNRLLHQICVIFFH 452
+V+ T+ W E+ +++T PL P ++ SN LL+ + H
Sbjct: 301 MVYNCTTGSTNPFHWGEV---EYHVISTFKRNPLEQAFRRPNVNLTSNHLLYYYWIAVSH 357
Query: 453 MIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRE 512
PA+ D + ++G P ++K R++K EY+ +N W + + V++L +N +
Sbjct: 358 KAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWSTDNVNMLMNQLNPED 417
Query: 513 RIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVF 572
+ + ID L +Y ++ M T+ ++L E LPAAR+H+ + + T+ +
Sbjct: 418 KKTFNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVIL 477
Query: 573 ILYTLSSYSETLRNLF 588
I + S+ RN++
Sbjct: 478 IWRIFIARSQMARNIW 493
|
|
| ZFIN|ZDB-GENE-060503-367 si:dkey-97m3.1 "si:dkey-97m3.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 175/494 (35%), Positives = 289/494 (58%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I E + GK + +TGA+GF+GKVL+EK+LR P+V +YIL+R K G++ +R++++
Sbjct: 4 ISEWYAGKNVLITGATGFMGKVLVEKLLRSCPDVNALYILVRPKAGQSMSERVQDMMKCK 63
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
LF+ ++ + K++ IS + LAI D + L S V I+ H AATIRFDE LK
Sbjct: 64 LFDRVRE-DNPEFHQKIIAISSELMQPGLAISAQDVETLTSRVHIVFHCAATIRFDEPLK 122
Query: 216 KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
A+ LN T+ +LSLA++M+ L+ F+HISTAY + + + E YPPP +P KLI+ +E
Sbjct: 123 HALQLNVMATQQLLSLAQQMQQLQAFIHISTAYANCNRRHIDELIYPPPVEPRKLIDSLE 182
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
M E + +G++PN+Y YTK L+E VV+ + + ++RPSI+ W+EP P
Sbjct: 183 WMDESIIRDITPRLIGDWPNTYTYTKALAE-CVVQQESAKLNVGIVRPSIVGASWQEPFP 241
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
GW DN NGP+G+ I AGKG++RTM N AD +PVD+ IN A W Y + + + +
Sbjct: 242 GWIDNFNGPSGVFIAAGKGILRTMRASNDAVADLIPVDVVINLTLAAGW-YTAVNKPKTA 300
Query: 396 IVH-LTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMI 454
+V+ T+ W EI S PL P ++ SN L++Q ++ H +
Sbjct: 301 LVYNCTTGGINPFHWGEIEHHVMSTFKRN-PLEQAFRRPNANITSNYLIYQYWILVSHKV 359
Query: 455 PAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERI 514
PA D ++ LSG+KP +++I +R++K + EY+++ WE+ ++ +++L ++ +R
Sbjct: 360 PALLYDLLLRLSGHKPQMMRIFNRLHKAIGLLEYFSSQDWEWNSDNMNMLMAQLSTDDRK 419
Query: 515 EYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRIMYWVDVIAKTLFFVFIL 574
+ D L+ +Y ++ + T+ ++L E +PAAR+H+R + + T+ VFI
Sbjct: 420 IFNFDVRQLNWPEYIENYCIGTKKYVLNEDMSDIPAARQHLRKLRNIRYTFNTVLLVFIW 479
Query: 575 YTLSSYSETLRNLF 588
+ S+ RN++
Sbjct: 480 RVFIARSQMARNIW 493
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q922J9 | FACR1_MOUSE | 1, ., 2, ., 1, ., n, 2 | 0.3434 | 0.7947 | 0.9475 | yes | N/A |
| Q66H50 | FACR1_RAT | 1, ., 2, ., 1, ., n, 2 | 0.3509 | 0.7980 | 0.9514 | yes | N/A |
| Q8WVX9 | FACR1_HUMAN | 1, ., 2, ., 1, ., n, 2 | 0.3414 | 0.7947 | 0.9475 | yes | N/A |
| Q5R834 | FACR1_PONAB | 1, ., 2, ., 1, ., n, 2 | 0.3393 | 0.7947 | 0.9475 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 614 | |||
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 1e-114 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 2e-76 | |
| PLN02996 | 491 | PLN02996, PLN02996, fatty acyl-CoA reductase | 2e-57 | |
| PLN02503 | 605 | PLN02503, PLN02503, fatty acyl-CoA reductase 2 | 8e-49 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 2e-28 | |
| cd09071 | 92 | cd09071, FAR_C, C-terminal domain of fatty acyl Co | 6e-28 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 1e-27 | |
| pfam03015 | 94 | pfam03015, Sterile, Male sterility protein | 3e-22 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 1e-18 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 2e-16 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 3e-09 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 9e-09 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 3e-07 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 4e-07 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 4e-06 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 2e-05 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 6e-04 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 0.002 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 344 bits (884), Expect = e-114
Identities = 131/316 (41%), Positives = 195/316 (61%), Gaps = 2/316 (0%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
K++ +TGA+GFLGKVLLEK+LR P++ KIY+L+R K G++A +R+ EL LF+ ++
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNT 222
++ K++PI GD L + + D Q L EV+I+IH AAT+ FDE L +A+ +N
Sbjct: 61 LN-PLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAATVTFDERLDEALSINV 119
Query: 223 RGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTV 282
GT +L LAK K L+ FVH+STAY + +++ EK YPPP DP KLI+ +E+M + +
Sbjct: 120 LGTLRLLELAKRCKKLKAFVHVSTAYVNGDRQLIEEKVYPPPADPEKLIDILELMDDLEL 179
Query: 283 EKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNIN 342
E+ + LG PN+Y +TK L+E LV++ N +P +++RPSI+ +EP PGW DN N
Sbjct: 180 ERATPKLLGGHPNTYTFTKALAERLVLKERGN-LPLVIVRPSIVGATLKEPFPGWIDNFN 238
Query: 343 GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402
GP GL + GKG++RTM D AD +PVD+ N + A +K + H SS
Sbjct: 239 GPDGLFLAYGKGILRTMNADPNAVADIIPVDVVANALLAAAAYSGVRKPRELEVYHCGSS 298
Query: 403 QEWQVSWQEIIDIGKS 418
+W E ++
Sbjct: 299 DVNPFTWGEAEELINQ 314
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 2e-76
Identities = 109/274 (39%), Positives = 148/274 (54%), Gaps = 32/274 (11%)
Query: 108 TGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-EELFASPLFNLLKSVHGQ 166
TGA+GFLGKVLLEK+LR +P VK IY L+R K G++A +R+ +EL LF+ LK
Sbjct: 2 TGATGFLGKVLLEKLLRSTPEVK-IYCLVRAKDGESALERLRQELLKYGLFDRLK----- 55
Query: 167 KIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTK 226
+++++P++GD L + + D Q LA EVD++IH AAT+ F E N GT+
Sbjct: 56 -ALERIIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTR 114
Query: 227 MMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRA 286
+L LAK+MK L F H+STAY + L E+ + ED
Sbjct: 115 EVLRLAKQMKKL-PFHHVSTAYVN-------------GERGGLLEEKPYKLDEDEPAL-- 158
Query: 287 KEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNIN-GPT 345
LG PN Y +K L+E LV EA G+P ++ RPSII E GW + + GP
Sbjct: 159 ---LGGLPNGYTQSKWLAEQLVREAA-GGLPVVIYRPSIITG---ESRTGWINGDDFGPR 211
Query: 346 GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGI 379
GLL GAG GV+ + D D +PVD N I
Sbjct: 212 GLLGGAGLGVLPDILGDPDARLDLVPVDYVANAI 245
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 2e-57
Identities = 108/344 (31%), Positives = 189/344 (54%), Gaps = 32/344 (9%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-EELFASPLFNLLK 161
KT+ +TGA+GFL K+ +EKILR PNVKK+Y+L+R K+A QR+ +E+ LF +L+
Sbjct: 12 KTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLR 71
Query: 162 SVHGQK----IIDKVLPISGDAEADELAIKESD-RQLLASEVDIMIHGAATIRFDEALKK 216
G+ I +KV P+ GD D+L +K+S+ R+ + E+DI+++ AAT FDE
Sbjct: 72 EKLGENLNSLISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDV 131
Query: 217 AVLLNTRGTKMMLSLAKEMKHLELFVHISTAY-CHLQEKVLYEKPYP-----------PP 264
A+ +NT G +L+ AK+ +++ +H+STAY C + ++ EKP+
Sbjct: 132 ALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDI 191
Query: 265 TDPHKLIE------RVEMMSEDTVEKRAKEF------LGEFPNSYAYTKCLSEGLVVEAM 312
+ KL++ + SE+ + + K+ L +PN+Y +TK + E L+
Sbjct: 192 NEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLLGNFK 251
Query: 313 NNGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPV 372
N +P +++RP++I ++EP PGW + + +++G GKG + D D +P
Sbjct: 252 EN-LPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPA 310
Query: 373 DITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIG 416
D+ +N + VA+ A+ + + + I H+ SS + V + + D
Sbjct: 311 DMVVNAMIVAMAAH-AGGQGSEIIYHVGSSLKNPVKFSNLHDFA 353
|
Length = 491 |
| >gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 8e-49
Identities = 109/391 (27%), Positives = 190/391 (48%), Gaps = 43/391 (10%)
Query: 51 EFIRCEVIVSELVMAANKVNNMNVPYETFYKPPVLSEEYRNLPDRIG--ETFTGKTLFMT 108
+ + LV++ N P S + D IG E GK +T
Sbjct: 68 QHVAACRDAGSLVLSPNG--KGQPEIAVKDLVPYGSSSAVEMADGIGIAEFLRGKNFLIT 125
Query: 109 GASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIE-ELFASPLFNLLKSVHGQK 167
GA+GFL KVL+EKILR +P+V KIY+L++ K + A +R++ E+ + LF L+ HG+
Sbjct: 126 GATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKS 185
Query: 168 ----IIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTR 223
++ K++P+ G+ L ++ +A EVD++I+ AA FDE A+ +NTR
Sbjct: 186 YQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTR 245
Query: 224 GTKMMLSLAKEMKHLELFVHISTAYCHLQEK-VLYEKPY-----------PPPTDPHKL- 270
G ++S AK+ K L+LF+ +STAY + Q + + EKP+ + PH
Sbjct: 246 GPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRP 305
Query: 271 ---IERVEM----------MSEDTVEKRAKEFLGE------FPNSYAYTKCLSEGLVVEA 311
IE E+ ++ ++ K+ E + ++Y +TK + E +V+ +
Sbjct: 306 ALDIEA-EIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMGE-MVINS 363
Query: 312 MNNGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLP 371
M +P +++RPS+I W++P PGW + +++ GKG + D G D +P
Sbjct: 364 MRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVP 423
Query: 372 VDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402
D+ +N A+ + + ++ + SS
Sbjct: 424 ADMVVNATLAAMAKHGGAAKPEINVYQIASS 454
|
Length = 605 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 91/333 (27%), Positives = 137/333 (41%), Gaps = 58/333 (17%)
Query: 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSV 163
T+ +TGA+GFLG LL ++L K NV KIY L+R K + A +R+ + L ++
Sbjct: 1 TVLLTGATGFLGAYLLRELL-KRKNVSKIYCLVRAKDEEAALERLIDN----LKEYGLNL 55
Query: 164 HGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLL 220
+ + ++ + GD L + + D Q LA EVD++IH A + + E LK A
Sbjct: 56 WDELELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEELKPA--- 112
Query: 221 NTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSED 280
N GTK +L LA K L+ +ST V + Y D E + M
Sbjct: 113 NVLGTKELLKLAATGK-LKPLHFVSTLS------VFSAEEYNALDD-----EESDDML-- 158
Query: 281 TVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN 340
E PN Y +K ++E L+ EA N G+P ++RP I D+
Sbjct: 159 -------ESQNGLPNGYIQSKWVAEKLLREAANRGLPVAIIRPGNIFG----------DS 201
Query: 341 INGPT------GLLIGAGKGVIRT-MFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393
G L+ KG ++ ++ + D PVD I V + A E
Sbjct: 202 ETGIGNTDDFFWRLL---KGCLQLGIYPISGAPLDLSPVDWVARAI-VKL-ALNESNEF- 255
Query: 394 QSIVHLTSS--QEWQVSWQEIIDIGKSIVTTEV 424
SI HL + + + G SI
Sbjct: 256 -SIYHLLNPPLISLNDLLDALEEKGYSIKEVSY 287
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-28
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 450 FFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMN 509
F H++PAY LD ++ L G KP L+K+ +I+K ++ EY+ N+W F N+ L + ++
Sbjct: 1 FLHLLPAYLLDLLLRLLGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLS 60
Query: 510 KRERIEYKIDGEDLDIKKYFQDCIMATRIFIL 541
+ +R + D +D YF++ I R ++L
Sbjct: 61 EEDRELFNFDIRSIDWDDYFENYIPGLRKYLL 92
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. Length = 92 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 85/317 (26%), Positives = 132/317 (41%), Gaps = 58/317 (18%)
Query: 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVH 164
+F+TG +GFLG+ L++++L N K+ +L+R + A +RIEE
Sbjct: 1 VFVTGGTGFLGRHLVKRLL---ENGFKVLVLVRSESLGEAHERIEEAGLEA--------- 48
Query: 165 GQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRG 224
D+V + GD L + + + LA +VD +IH AA+ F + A N G
Sbjct: 49 -----DRVRVLEGDLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDG 103
Query: 225 TKMMLSLAKEMKHLELFVHISTAY-CHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVE 283
T+ +L LA ++ F ++STAY +E + E P
Sbjct: 104 TEHVLELAAR-LDIQRFHYVSTAYVAGNREGNIRETELNPGQ------------------ 144
Query: 284 KRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNING 343
F N Y +K +E LV A +P + RPSI++ + G + I+G
Sbjct: 145 --------NFKNPYEQSKAEAEQLVRAAATQ-IPLTVYRPSIVVGDSKT---GRIEKIDG 192
Query: 344 PTGLLIG-AGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR-QSIVHLTS 401
LL A G M + + +PVD + I YLS+K I HLT
Sbjct: 193 LYELLNLLAKLGRWLPMPGNKGARLNLVPVDYVADAIV-----YLSKKPEANGQIFHLTD 247
Query: 402 SQEWQVSWQEIIDIGKS 418
+ +EI D+ KS
Sbjct: 248 PTPQTL--REIADLFKS 262
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|111859 pfam03015, Sterile, Male sterility protein | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-22
Identities = 38/94 (40%), Positives = 61/94 (64%)
Query: 450 FFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMN 509
F+H +PAYFLD ++ L G KP LVK+ +I+KG EV + ++ N+W F N+ LR+ M+
Sbjct: 1 FYHTLPAYFLDLLLRLYGQKPRLVKLYRKIHKGLEVLQPFSLNEWIFDNKNTRELREKMS 60
Query: 510 KRERIEYKIDGEDLDIKKYFQDCIMATRIFILKE 543
+ ++ + D E LD +YF++ I R ++LKE
Sbjct: 61 EEDKKLFNFDMESLDWDEYFRNAIRGIRKYLLKE 94
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 94 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSV 163
T+ +TGA+GFLG LLE++LR+S K+ L+R ++A +R+ E S L
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQA-KVICLVRAASEEHAMERLREALRS---YRLWHE 56
Query: 164 HGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLL 220
+++ ++GD L + +++ + LA VD ++H A + + L+ A
Sbjct: 57 DL--ARERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRGA--- 111
Query: 221 NTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSED 280
N GT+ +L LA + ++ST V D + E +
Sbjct: 112 NVLGTREVLRLA-ASGRAKPLHYVSTI------SVG------AAIDLSTVTE-----DDA 153
Query: 281 TVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIII 327
TV YA +K ++E LV EA + G+P ++RP I+
Sbjct: 154 TVTP-----PPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRIL 195
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 33/228 (14%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
+ + +TGA+GFLG LL ++L +S K+ L+R + + A R+E+ F L+
Sbjct: 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTF--DLYRHWDE 56
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVL 219
+ ++ ++GD +L + E Q LA VD++IH AA + L+ A
Sbjct: 57 LSADRVE----VVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGA-- 110
Query: 220 LNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSE 279
N GT +L LA + ++S+ + E Y
Sbjct: 111 -NVLGTAEVLRLA-ATGKPKPLHYVSSI-------SVGETEYYSNFTVD------FDEIS 155
Query: 280 DTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIII 327
T G Y +K ++E LV EA + G+P + RP I
Sbjct: 156 PTRNVGQGLAGG-----YGRSKWVAEKLVREAGDRGLPVTIFRPGYIT 198
|
Length = 382 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 59/320 (18%), Positives = 109/320 (34%), Gaps = 76/320 (23%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
+ +TG +GF+G L+E++L +V+ + L
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL-------------------- 40
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEAL----KKAV 218
+ V + D +L +L D +IH AA ++ + +
Sbjct: 41 ------LSGVEFVVLDLTDRDLV-----DELAKGVPDAVIHLAAQSSVPDSNASDPAEFL 89
Query: 219 LLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMS 278
+N GT +L A+ ++ FV S+ V+Y P P P D R
Sbjct: 90 DVNVDGTLNLLEAARAA-GVKRFVFASSVS------VVYGDPPPLPIDEDLGPPR----- 137
Query: 279 EDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIII-PVWREPLPG 336
N Y +K +E L+ G+P ++LRP + P + L
Sbjct: 138 --------------PLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSS 183
Query: 337 WTDNINGPTGLLIGAGKGV-IRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395
+ + KG I + D + DF+ VD + + +A+ E+
Sbjct: 184 G-----VVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLAL-------ENPDG 231
Query: 396 IVHLTSSQEWQVSWQEIIDI 415
V S +++ +E+ +
Sbjct: 232 GVFNIGSGTAEITVRELAEA 251
|
Length = 314 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 55/244 (22%)
Query: 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSV 163
F+TG +GF+G+ L+ ++L + +++L+R++ + R+E L A
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQ----SLSRLEALAA---------- 46
Query: 164 HGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAAT--IRFDEALKKAVLLN 221
D+V+P+ GD L + E+D L ++D ++H AA + DE ++A N
Sbjct: 47 --YWGADRVVPLVGDLTEPGLGLSEADIAELG-DIDHVVHLAAIYDLTADEEAQRAA--N 101
Query: 222 TRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDT 281
GT+ ++ LA+ ++ F H+S+ + YE + ED
Sbjct: 102 VDGTRNVVELAERLQA-ATFHHVSS----IAVAGDYEGVF----------------REDD 140
Query: 282 VEKRAKEFLGE-FPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN 340
+ G+ P Y TK +E LV E G+P + RP++++ R G D
Sbjct: 141 FD------EGQGLPTPYHRTKFEAEKLVREE--CGLPWRVYRPAVVVGDSRT---GEMDK 189
Query: 341 INGP 344
I+GP
Sbjct: 190 IDGP 193
|
Length = 657 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 52/228 (22%), Positives = 75/228 (32%), Gaps = 67/228 (29%)
Query: 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHG 165
+TGA+GFLG L+ +L + V+ L+R L P
Sbjct: 2 LVTGATGFLGSNLVRALLAQGYRVR---ALVRSG------SDAVLLDGLP---------- 42
Query: 166 QKIIDKVLPISGDAEADELAIKESDRQLLA---SEVDIMIHGAATIRFDEALKKAVLL-- 220
++ V GD D LA D + H AA K L
Sbjct: 43 ---VEVVE---GDLT---------DAASLAAAMKGCDRVFHLAAFTSL--WAKDRKELYR 85
Query: 221 -NTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSE 279
N GT+ +L A E + VH S+ L P I+
Sbjct: 86 TNVEGTRNVLDAALE-AGVRRVVHTSSIAA-LGG------------PPDGRIDE------ 125
Query: 280 DTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIII 327
T FPN Y +K L+E V+EA G+ +++ PS +
Sbjct: 126 -TTPWNE----RPFPNDYYRSKLLAELEVLEAAAEGLDVVIVNPSAVF 168
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPN-VKKIYILMRQKKGKNARQRIEELFASPLFNLLK 161
T+F+TGA+GFLG +L +L + N K++ +R K + +R+ + + +
Sbjct: 972 ITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRK--TGTTYGIWD 1029
Query: 162 SVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAA 206
++ ++ + GD ++ + + L +EVD++IH A
Sbjct: 1030 ----EEWASRIEVVLGDLSKEKFGLSDEKWSDLTNEVDVIIHNGA 1070
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 41/191 (21%)
Query: 199 DIMIHGAATIRFDEALKKAVLL---NTRGTKMMLSLAKEMKHLELFVHISTA--YCHLQE 253
D+++H AA + + N GT +L A++ ++ FV+ S+A Y +
Sbjct: 32 DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAG-VKRFVYASSASVYGSPEG 90
Query: 254 KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN 313
E+ P P P Y +K +E L+
Sbjct: 91 LPEEEETPPRPLSP-----------------------------YGVSKLAAEHLLRSYGE 121
Query: 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPV 372
G+P ++LR + + + P +N + T+F DF+ V
Sbjct: 122 SYGLPVVILRLANVYGPGQR--PRLDGVVNDFIRRALEGKP---LTVFGGGNQTRDFIHV 176
Query: 373 DITINGIFVAI 383
D + I A+
Sbjct: 177 DDVVRAILHAL 187
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 32/153 (20%)
Query: 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLL 160
GKT+ +TG +G +G L+ +IL+ P KK+ + R + L L+
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGP--KKLIVFDRDENK--------------LHELV 44
Query: 161 KSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAAT--IR-----FDEA 213
+ + + DK+ I GD D+ ++ + ++ DI+ H AA + +EA
Sbjct: 45 RELRSRFPHDKLRFIIGDV-RDKERLRRAFKER---GPDIVFHAAALKHVPSMEDNPEEA 100
Query: 214 LKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246
+K VL GTK ++ A E +E FV IST
Sbjct: 101 IKTNVL----GTKNVIDAAIENG-VEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 43/223 (19%), Positives = 74/223 (33%), Gaps = 62/223 (27%)
Query: 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHG 165
+TG +GF+G L+ ++L++ V + R + R R E +L
Sbjct: 2 LVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNTGRIRFHEG------DLTDPDAL 55
Query: 166 QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLL---NT 222
++++ +V P D +IH AA + + N
Sbjct: 56 ERLLAEVQP------------------------DAVIHLAAQSGVGASFEDPADFIRANV 91
Query: 223 RGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTV 282
GT +L A+ ++ FV S++ +Y PP EDT
Sbjct: 92 LGTLRLLEAARRAG-VKRFVFASSS-E------VYGDVADPPIT------------EDT- 130
Query: 283 EKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPS 324
+ YA K +E LV G+ ++LR
Sbjct: 131 -------PLGPLSPYAAAKLAAERLVEAYARAYGLRAVILRLF 166
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 40/163 (24%)
Query: 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFAS 154
IG TGKT+ +TG G +G L +IL+ +P K+I + R +
Sbjct: 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP--KEIILFSRDEYK------------- 287
Query: 155 PLFNLLKSVHGQKIIDKVLPISGD-AEADELAIKESDRQLLASEVDIMIHGAATIRFDEA 213
L+ + + + K+ GD + D + +R + +VDI+ H A A
Sbjct: 288 -LYLIDMELREKFPELKLRFYIGDVRDRDRV-----ERAMEGHKVDIVFHAA-------A 334
Query: 214 LK----------KAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246
LK +A+ N GT+ + A + ++ FV IST
Sbjct: 335 LKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG-VKKFVLIST 376
|
Length = 588 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 614 | |||
| KOG1221|consensus | 467 | 100.0 | ||
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 100.0 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.98 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.98 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.98 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.98 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.97 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.97 | |
| KOG1502|consensus | 327 | 99.97 | ||
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.97 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.97 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.97 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.97 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.97 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.97 | |
| KOG0747|consensus | 331 | 99.97 | ||
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.97 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.97 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.97 | |
| KOG1430|consensus | 361 | 99.97 | ||
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.97 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.97 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.97 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.97 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.97 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.96 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.96 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.96 | |
| KOG1429|consensus | 350 | 99.96 | ||
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.96 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.96 | |
| KOG1371|consensus | 343 | 99.96 | ||
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.96 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.95 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.95 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.95 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.95 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.94 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.94 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.94 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.93 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.93 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.92 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.92 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.92 | |
| PF03015 | 94 | Sterile: Male sterility protein; InterPro: IPR0042 | 99.92 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.91 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.91 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.87 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.86 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.86 | |
| cd09071 | 92 | FAR_C C-terminal domain of fatty acyl CoA reductas | 99.85 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.83 | |
| KOG1431|consensus | 315 | 99.82 | ||
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.82 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.82 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.81 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.8 | |
| KOG2865|consensus | 391 | 99.8 | ||
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.78 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.77 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.77 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.76 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.76 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.75 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.75 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.72 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.71 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.7 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.7 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.7 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.69 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.69 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.69 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.69 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.69 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.68 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.67 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.65 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.65 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.65 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.65 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.65 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.64 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.64 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.64 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.63 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.63 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.63 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.62 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.62 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.61 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.61 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.6 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.6 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.59 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.59 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.59 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.59 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.59 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.59 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.58 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.58 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.58 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.58 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.57 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.57 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.57 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.56 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.56 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.56 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.56 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.55 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.54 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.54 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.54 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.53 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.53 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.53 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.53 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.53 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.51 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.5 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.49 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.49 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.49 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.49 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.49 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.48 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.48 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.47 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.47 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.47 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.47 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.46 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.46 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.46 | |
| KOG1372|consensus | 376 | 99.46 | ||
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.45 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.44 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.43 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.43 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.42 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.42 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.41 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.41 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.41 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.4 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.4 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.39 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.39 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.39 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.39 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.39 | |
| KOG4039|consensus | 238 | 99.38 | ||
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.38 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.38 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.36 | |
| KOG1205|consensus | 282 | 99.35 | ||
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.34 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.34 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.34 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.32 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.32 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.3 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.3 | |
| KOG2774|consensus | 366 | 99.29 | ||
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.29 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.28 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.28 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.28 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.28 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.28 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.26 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.26 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.25 | |
| KOG1201|consensus | 300 | 99.24 | ||
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.22 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.22 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.22 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.21 | |
| KOG4288|consensus | 283 | 99.21 | ||
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.21 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.16 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.15 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.12 | |
| KOG1203|consensus | 411 | 99.09 | ||
| PLN00015 | 308 | protochlorophyllide reductase | 99.08 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 98.98 | |
| KOG1610|consensus | 322 | 98.98 | ||
| KOG4169|consensus | 261 | 98.97 | ||
| KOG0725|consensus | 270 | 98.95 | ||
| KOG1208|consensus | 314 | 98.94 | ||
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.92 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 98.89 | |
| KOG1611|consensus | 249 | 98.87 | ||
| KOG1200|consensus | 256 | 98.86 | ||
| KOG3019|consensus | 315 | 98.82 | ||
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.81 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 98.8 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 98.75 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 98.72 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.57 | |
| KOG1210|consensus | 331 | 98.56 | ||
| KOG1209|consensus | 289 | 98.53 | ||
| KOG1207|consensus | 245 | 98.51 | ||
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.49 | |
| PLN00106 | 323 | malate dehydrogenase | 98.45 | |
| KOG1014|consensus | 312 | 98.35 | ||
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.28 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.24 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.2 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.17 | |
| KOG1204|consensus | 253 | 98.08 | ||
| KOG1199|consensus | 260 | 98.07 | ||
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 97.92 | |
| KOG1178|consensus | 1032 | 97.89 | ||
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.78 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.74 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.72 | |
| KOG1478|consensus | 341 | 97.58 | ||
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.53 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.52 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.52 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.44 | |
| KOG2733|consensus | 423 | 97.38 | ||
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.27 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.23 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 97.2 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 97.2 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.18 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.08 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.86 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.71 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.62 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.47 | |
| KOG1202|consensus | 2376 | 96.44 | ||
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 96.34 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 96.31 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.3 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.25 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.13 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.96 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 95.96 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.91 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 95.83 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.76 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.68 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 95.64 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.42 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.41 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.35 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.31 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.3 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.25 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.19 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.16 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.13 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.04 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 94.89 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.86 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 94.85 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.82 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.57 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.49 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.49 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 94.47 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.43 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 94.3 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.28 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 94.26 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.23 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.09 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 94.08 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 94.07 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.07 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.03 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 93.98 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 93.98 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.95 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.9 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 93.79 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 93.59 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.57 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 93.55 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.45 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 93.3 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.18 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.1 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 92.98 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 92.75 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 92.68 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 92.59 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 92.52 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 92.47 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 92.12 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 91.76 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 91.75 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 91.67 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 91.38 | |
| PRK07411 | 390 | hypothetical protein; Validated | 91.36 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 91.34 | |
| PLN02602 | 350 | lactate dehydrogenase | 91.3 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 91.15 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 91.13 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 91.04 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 90.99 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 90.79 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 90.67 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 90.43 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 89.99 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 89.85 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 89.83 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 89.78 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 89.71 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 89.68 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 89.6 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.47 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.47 | |
| PRK05691 | 4334 | peptide synthase; Validated | 89.21 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 89.04 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 89.04 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 88.94 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.93 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 88.87 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 88.78 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 88.5 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 88.47 | |
| KOG1494|consensus | 345 | 88.46 | ||
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 88.08 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 87.92 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 87.84 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 87.46 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 87.32 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 87.19 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 87.13 | |
| PRK05691 | 4334 | peptide synthase; Validated | 86.72 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 86.64 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.55 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 86.42 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 86.28 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 86.23 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 86.16 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 86.16 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 85.97 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 85.79 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 85.73 | |
| KOG4022|consensus | 236 | 85.6 | ||
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 85.44 | |
| KOG1198|consensus | 347 | 85.31 | ||
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 85.12 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 84.87 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.68 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.58 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 84.54 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 84.28 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.14 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 84.1 | |
| PTZ00374 | 1108 | dihydroxyacetone phosphate acyltransferase; Provis | 83.77 | |
| KOG0023|consensus | 360 | 83.76 | ||
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 83.76 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 83.63 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 83.44 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.25 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.2 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 83.09 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 83.09 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 82.91 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.79 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 82.61 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 82.59 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 82.51 | |
| COG0743 | 385 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 82.38 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 82.08 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 82.07 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 81.97 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.95 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 81.75 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 81.56 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.44 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 81.29 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 81.28 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.93 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.69 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 80.68 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.68 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 80.15 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 80.06 |
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-99 Score=791.22 Aligned_cols=461 Identities=41% Similarity=0.777 Sum_probs=447.9
Q ss_pred cccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEE
Q psy6053 94 DRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVL 173 (614)
Q Consensus 94 ~~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~ 173 (614)
+++.+||++|+|||||||||+|++|+|+||+.+|+|++||+|+|+++++++++|+++.+++++|+.+++.+|+ ..+|+.
T Consensus 4 ~~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~-~l~Kv~ 82 (467)
T KOG1221|consen 4 SDIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPE-ALEKVV 82 (467)
T ss_pred ccHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCcc-ceecce
Confidence 3488999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC
Q psy6053 174 PISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE 253 (614)
Q Consensus 174 ~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~ 253 (614)
+|.||+++++||+++++.+.+.++||+|||+||+++|+++++.+..+|+.||++++++|++|.+++.|+||||+|+++..
T Consensus 83 pi~GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~ 162 (467)
T KOG1221|consen 83 PIAGDISEPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNV 162 (467)
T ss_pred eccccccCcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCC--ChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccC
Q psy6053 254 KVLYEKPYPPPT--DPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 254 ~~i~E~~~~~p~--~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~ 331 (614)
..++|++|+.+. ++++++++.++++++.++..+|.+.++|||+|++||+++|+++.++++ ++|++|+||++|+++++
T Consensus 163 ~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~-~lPivIiRPsiI~st~~ 241 (467)
T KOG1221|consen 163 GHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE-NLPLVIIRPSIITSTYK 241 (467)
T ss_pred ccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc-CCCeEEEcCCceecccc
Confidence 999999999888 899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC-CCccEEEeccCCcccccHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE-HRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~-~~~~vyni~~~~~~~it~~ 410 (614)
+|+|||+||.+||.+++.++++|.++.+.++++...|+||||+|||++++++|......+ .+.+|||++++..||++|+
T Consensus 242 EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~ 321 (467)
T KOG1221|consen 242 EPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWG 321 (467)
T ss_pred CCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHH
Confidence 999999999999999999999999999999999999999999999999999987765322 2467999999999999999
Q ss_pred HHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 411 EIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 411 e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
++.+...++ ..+.|+.+.+|+|....+++.+.|.++.+++|++|++++|...++.|++|.+.+++++++++.++++||+
T Consensus 322 ~~~e~~~~~-~~~~Pl~~~iw~P~~~~~sn~~~f~~~~~~~h~lPa~~~d~~~~i~g~k~~~~k~~~ki~~~~~~l~~f~ 400 (467)
T KOG1221|consen 322 DFIELALRY-FEKIPLEKMIWYPFGTLTSNPWLFNLAAFLYHTLPAYILDLLLRLLGKKPRLVKLYRKIHKLVKLLEPFS 400 (467)
T ss_pred HHHHHHHHh-cccCCcccceeccCceeeecHhHHHHHHHHHHHhhHHHHHHHHHHhCCChhhhHHHHHHHHHHHhhhhhe
Confidence 999999999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEechhHHHHHHHcChhccccccCcCCCCCHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHH
Q psy6053 491 NNQWEFRNEYVHVLRKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHMRI 557 (614)
Q Consensus 491 ~~~w~f~~~n~~~l~~~l~~~D~~~f~~d~~~~dw~~Y~~~~~~G~r~y~~ke~~~~l~~ar~~~~~ 557 (614)
.++|.|+++|+.+|++.|+++||++|+||++++||++|+.+|+.|+|+|++||+++++|+||++++|
T Consensus 401 ~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~~i~G~r~~llKe~~e~l~~~r~~~kr 467 (467)
T KOG1221|consen 401 LFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNRHLLGLRKYLLKESPESLPQARKRLKR 467 (467)
T ss_pred eceEEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhcCChhhhHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-78 Score=665.81 Aligned_cols=441 Identities=28% Similarity=0.482 Sum_probs=392.5
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHH-HHHhChhhHHhhhhcccc----cc
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIE-ELFASPLFNLLKSVHGQK----II 169 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~-~~~~~~~f~~l~~~~p~~----~~ 169 (614)
.+++||++|+|||||||||||++|+++||+.++++++||+|+|++++.++.+|++ ++++.++|++++++++.. ..
T Consensus 112 ~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~ 191 (605)
T PLN02503 112 GIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFML 191 (605)
T ss_pred chhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCcccccccc
Confidence 3789999999999999999999999999999999999999999999999999995 788899999999887751 15
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
.|++++.||+++++|||++++++.+.+++|+|||+||.++++.+++.+.++|+.||.+++++|++++++++|||+||+|+
T Consensus 192 ~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayV 271 (605)
T PLN02503 192 SKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYV 271 (605)
T ss_pred ccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCcee
Confidence 79999999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred ccCCc-ccccccCC-------------------CCCChhHHHHHH----h--hcchhHHhh-----hhhhhcCCCCCchh
Q psy6053 250 HLQEK-VLYEKPYP-------------------PPTDPHKLIERV----E--MMSEDTVEK-----RAKEFLGEFPNSYA 298 (614)
Q Consensus 250 ~~~~~-~i~E~~~~-------------------~p~~~~~~~~~~----~--~~~~~~l~~-----~~p~~~~~~pn~Y~ 298 (614)
++... .+.|+.|+ ++.|+++.++++ + +.+++..+. +++.+.++|||+|+
T Consensus 272 yG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt 351 (605)
T PLN02503 272 NGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYV 351 (605)
T ss_pred ecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHH
Confidence 99885 89999997 567899988887 2 233344444 67789999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCC--CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHH
Q psy6053 299 YTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN--INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITI 376 (614)
Q Consensus 299 ~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~--~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva 376 (614)
+||++||+++.++.. ++|++|+||++|.+++++|+|||+|| .++|.. ..+++|.++.++++++...|+||||+||
T Consensus 352 ~TK~lAE~lV~~~~~-~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~--~~~g~G~lr~~~~~~~~~~DiVPVD~vv 428 (605)
T PLN02503 352 FTKAMGEMVINSMRG-DIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIV--LYYGKGQLTGFLADPNGVLDVVPADMVV 428 (605)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEcCCEecccccCCccccccCccccchhh--hheeccceeEEEeCCCeeEeEEeecHHH
Confidence 999999999998887 99999999999999999999999999 455554 4446999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHH
Q psy6053 377 NGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPA 456 (614)
Q Consensus 377 ~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa 456 (614)
|+++++++.........+++||++++..||++|+++.+.+.++ +.+.|+.+..|+|. ..+.+.+.+.+..+++|+
T Consensus 429 na~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~-~~~~P~~~~~~~~~-~~~~~~~~~~~~~~~~h~--- 503 (605)
T PLN02503 429 NATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEH-YKSSPYMDSKGRPI-HVPPMKLFSSMEDFSSHL--- 503 (605)
T ss_pred HHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHH-HhhCCcccccCcce-eccCceehhhHHHHHHHH---
Confidence 9999996543321123578999999999999999999999998 88899999999997 568889999999999996
Q ss_pred HHHHHHHHHh-----CCChHHHHHHHHHHH--------HHhhhhhhhcceEEEechhHHHHHHHcChhccccccCcCCCC
Q psy6053 457 YFLDAIIFLS-----GNKPCLVKIQDRINK--------GFEVFEYYANNQWEFRNEYVHVLRKIMNKRERIEYKIDGEDL 523 (614)
Q Consensus 457 ~~~d~~~~~~-----G~~P~~~~l~~ki~~--------~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~D~~~f~~d~~~~ 523 (614)
+.|.+.++. |++|++.+.++++++ +.++++||+.++|.|+++|+++|++.|+++||+.|+||++.+
T Consensus 504 -~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~~i 582 (605)
T PLN02503 504 -WRDALLRSGLAGMSSSDRKLSQKLENICAKSVEQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSI 582 (605)
T ss_pred -HHHHHHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcCCC
Confidence 577776654 478888888875544 899999999999999999999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhhCCC
Q psy6053 524 DIKKYFQD-CIMATRIFILKEM 544 (614)
Q Consensus 524 dw~~Y~~~-~~~G~r~y~~ke~ 544 (614)
||++|+++ |+.|+|+|++|+-
T Consensus 583 dW~~Y~~~~~i~G~rky~lk~~ 604 (605)
T PLN02503 583 DWRDYITNVHIPGLRRHVMKGR 604 (605)
T ss_pred CHHHHHHHhhhhHHHHHHhccC
Confidence 99999997 9999999999983
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=657.99 Aligned_cols=445 Identities=28% Similarity=0.474 Sum_probs=401.8
Q ss_pred cccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHH-HHHhChhhHHhhhhcccccc---
Q psy6053 94 DRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIE-ELFASPLFNLLKSVHGQKII--- 169 (614)
Q Consensus 94 ~~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~-~~~~~~~f~~l~~~~p~~~~--- 169 (614)
++|.+||+||+|||||||||||++|+++||+.++++++||||+|+++++++++|++ ++.+.++|+++++..|+ ..
T Consensus 3 ~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~-~~~~~ 81 (491)
T PLN02996 3 GSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGE-NLNSL 81 (491)
T ss_pred ccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcch-hhhhh
Confidence 46889999999999999999999999999999999999999999999999999996 88889999999887765 33
Q ss_pred --CeEEEEeCCCCCCCCCCCHHH-HHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 170 --DKVLPISGDAEADELAIKESD-RQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 170 --~~v~~v~gDl~~~~lGLs~~~-~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
.+++++.||+++++|||++.+ ++.+++++|+|||+||.+++..+++.+.++|+.||.+++++|++++++++|||+||
T Consensus 82 ~~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST 161 (491)
T PLN02996 82 ISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST 161 (491)
T ss_pred hhcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 789999999999999998877 67888999999999999999888899999999999999999999768899999999
Q ss_pred ceeccCCc-ccccccCCCCC--------Chh--------HHHHHHhh-cchhHHhh------hhhhhcCCCCCchhhhHH
Q psy6053 247 AYCHLQEK-VLYEKPYPPPT--------DPH--------KLIERVEM-MSEDTVEK------RAKEFLGEFPNSYAYTKC 302 (614)
Q Consensus 247 ~~~~~~~~-~i~E~~~~~p~--------~~~--------~~~~~~~~-~~~~~l~~------~~p~~~~~~pn~Y~~SK~ 302 (614)
+++++... .++|+.|+++. |++ ++.++.++ ++++.++. ++|....+|||+|+.||+
T Consensus 162 ~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~ 241 (491)
T PLN02996 162 AYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKA 241 (491)
T ss_pred eEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHH
Confidence 99997754 67888888654 444 34444444 77777763 677778899999999999
Q ss_pred HHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHH
Q psy6053 303 LSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVA 382 (614)
Q Consensus 303 ~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~ 382 (614)
+||+++.++.. ++|++|+||++|+|++++|++||+++++++.+++.++++|.++.+++++++.+|+|||||||++++.+
T Consensus 242 ~aE~lv~~~~~-~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a 320 (491)
T PLN02996 242 MGEMLLGNFKE-NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVA 320 (491)
T ss_pred HHHHHHHHhcC-CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHH
Confidence 99999998877 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhcccccCCC----CccccCCcccccchhHHHHHHHHHhhhHHHH
Q psy6053 383 IWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLN----GCVWYPGGSMKSNRLLHQICVIFFHMIPAYF 458 (614)
Q Consensus 383 ~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~ 458 (614)
+++... ....+++||++++..+++||+|+.+.+.++ ..+.|+. +.+|+|...++.+.+.|.++.+++|.+|+++
T Consensus 321 ~~~~~~-~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~-~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~lp~~~ 398 (491)
T PLN02996 321 MAAHAG-GQGSEIIYHVGSSLKNPVKFSNLHDFAYRY-FSKNPWINKEGSPVKVGKGTILSTMASFSLYMTIRYLLPLKA 398 (491)
T ss_pred HHHhhc-cCCCCcEEEecCCCCCcccHHHHHHHHHHH-hhhCCCcCCCCCeEeeCCceecCcHHHHHHHHHHHHHhHHHH
Confidence 987421 012467999999888899999999999999 5678887 5899999999999999999999999999999
Q ss_pred HHHHHH--HhCCChHHHHHHHHH---HHHHhhhhhhhcceEEEechhHHHHHHHcChhc---cccccCcCCCCCHHHHHH
Q psy6053 459 LDAIIF--LSGNKPCLVKIQDRI---NKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRE---RIEYKIDGEDLDIKKYFQ 530 (614)
Q Consensus 459 ~d~~~~--~~G~~P~~~~l~~ki---~~~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~D---~~~f~~d~~~~dw~~Y~~ 530 (614)
+|.+.. ..|++|++.++++|+ ++..++++||+.++|.|+++|+++|++.|+++| |++|+||++.+||++|++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~~~~~w~~y~~ 478 (491)
T PLN02996 399 LQLVNIILPKRYGDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKSIDWEDYMT 478 (491)
T ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccCcccCCHHHHHH
Confidence 999877 667999999999999 666999999999999999999999999999955 999999999999999999
Q ss_pred H-HHHHHHHHhhC
Q psy6053 531 D-CIMATRIFILK 542 (614)
Q Consensus 531 ~-~~~G~r~y~~k 542 (614)
+ |+.|+|+|++|
T Consensus 479 ~~~~~g~~~y~~k 491 (491)
T PLN02996 479 NVHIPGLVKYVLK 491 (491)
T ss_pred HhhHHHHHHHhcC
Confidence 9 99999999987
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=345.36 Aligned_cols=245 Identities=33% Similarity=0.524 Sum_probs=167.7
Q ss_pred EecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHh-ChhhHHhhhhccccccCeEEEEeCCCCCCCCC
Q psy6053 107 MTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFA-SPLFNLLKSVHGQKIIDKVLPISGDAEADELA 185 (614)
Q Consensus 107 ITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~-~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lG 185 (614)
|||||||||++|+++|+++++++ +||||+|+++..++.+|+.+.+. ..+++...+ . ..+||+++.||+++++||
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~---~-~~~ri~~v~GDl~~~~lG 75 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDALKEYGLWDDLDK---E-ALSRIEVVEGDLSQPNLG 75 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-H---H-HTTTEEEEE--TTSGGGG
T ss_pred CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhhcccccchhhhhh---h-hhccEEEEeccccccccC
Confidence 79999999999999999998766 89999999988889999976554 555554422 1 357999999999999999
Q ss_pred CCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-ccccccCCCC
Q psy6053 186 IKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-VLYEKPYPPP 264 (614)
Q Consensus 186 Ls~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-~i~E~~~~~p 264 (614)
|++++++.+.+++|+||||||.++|..+++++.++||.||++++++|.+. +.++|+|+||+++.+... .++|+.++.
T Consensus 76 L~~~~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~-~~~~~~~iSTa~v~~~~~~~~~~~~~~~- 153 (249)
T PF07993_consen 76 LSDEDYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQG-KRKRFHYISTAYVAGSRPGTIEEKVYPE- 153 (249)
T ss_dssp --HHHHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSS-S---EEEEEEGGGTTS-TTT--SSS-HH-
T ss_pred CChHHhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhc-cCcceEEeccccccCCCCCccccccccc-
Confidence 99999999999999999999999999999999999999999999999985 556999999987776654 344432210
Q ss_pred CChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhC-CCCEEEeecceeecccCCCCccccCCCC-
Q psy6053 265 TDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNN-GMPCLMLRPSIIIPVWREPLPGWTDNIN- 342 (614)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~-glp~~IvRp~~I~g~~~~p~~gw~d~~~- 342 (614)
+.........++|+|.+|||+||++++++.++ |+|++|+|||+|+|. +.+||.+...
T Consensus 154 ------------------~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~---~~~G~~~~~~~ 212 (249)
T PF07993_consen 154 ------------------EEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGD---SRTGWWNSDDF 212 (249)
T ss_dssp ------------------H--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-S---SSSS---TTBH
T ss_pred ------------------ccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCccccc---CCCceeeccch
Confidence 00112223467899999999999999999974 999999999999994 4458887766
Q ss_pred chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHH
Q psy6053 343 GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGI 379 (614)
Q Consensus 343 g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~ai 379 (614)
.+..+...+..|..+..+++++...|++|||.||++|
T Consensus 213 ~~~~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 213 FPYLLRSCIALGAFPDLPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp HHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccCCCCceEeEECHHHHHhhC
Confidence 5556666777788877778888889999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=327.54 Aligned_cols=280 Identities=24% Similarity=0.300 Sum_probs=212.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHh-ChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFA-SPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~-~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
++||+||||||+|.+|+++||++- + .+|+||+|.++.+.+.+||++.++ ...|+.. ..++|+++.||+++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~-~-~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~-------~~~ri~vv~gDl~e 71 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRS-D-AKVICLVRAQSDEAALARLEKTFDLYRHWDEL-------SADRVEVVAGDLAE 71 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcC-C-CcEEEEEecCCHHHHHHHHHHHhhhhhhhhhh-------hcceEEEEeccccc
Confidence 579999999999999999999984 4 589999999999999999999887 2222322 56899999999999
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPY 261 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~ 261 (614)
++|||++.+++.|.+++|.|||+||.|++..+|+++...||.||.+++++|.. ++.|+|+||||.++.........+.-
T Consensus 72 ~~lGL~~~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~-gk~Kp~~yVSsisv~~~~~~~~~~~~ 150 (382)
T COG3320 72 PDLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAAT-GKPKPLHYVSSISVGETEYYSNFTVD 150 (382)
T ss_pred ccCCCCHHHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhc-CCCceeEEEeeeeeccccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999 68999999999988655432211100
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~ 341 (614)
.+ + ..-+...-+.++++|++|||+||.+++++.++|+|++|+|||.|.|+++++ -.
T Consensus 151 ---------------~~-~--~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG---~~--- 206 (382)
T COG3320 151 ---------------FD-E--ISPTRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTG---AL--- 206 (382)
T ss_pred ---------------cc-c--ccccccccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccC---cc---
Confidence 00 0 000111234567999999999999999999999999999999999998743 11
Q ss_pred CchHHHHHHHhcCceee-EeeCCCccccceeHHHHHHHHHHHHHhhhhc-------CCCCccEEEeccCCcccccHHHHH
Q psy6053 342 NGPTGLLIGAGKGVIRT-MFCDNTGYADFLPVDITINGIFVAIWAYLSQ-------KEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 342 ~g~~~~~~~~~~g~~~~-~~~~~~~~~d~vpVDdva~aii~~~~~~~~~-------~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
....++..+.+|++.. ..++.....|.+|+|.+++++...+...... .+.....|+ .++....+...++.
T Consensus 207 -n~~D~~~Rlv~~~~~lg~~P~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~-~~~~~~~i~l~~~~ 284 (382)
T COG3320 207 -NTRDFLTRLVLGLLQLGIAPDSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLH-MLTHPDEIGLDEYV 284 (382)
T ss_pred -ccchHHHHHHHHHHHhCCCCCcccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhhee-cccCCCccchhHHH
Confidence 1223333444433321 2345677788889888888777665554310 011223455 22333789999999
Q ss_pred HHHhh
Q psy6053 414 DIGKS 418 (614)
Q Consensus 414 ~~~~~ 418 (614)
+...+
T Consensus 285 ~w~~~ 289 (382)
T COG3320 285 DWLIS 289 (382)
T ss_pred HhHhh
Confidence 98887
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=292.46 Aligned_cols=295 Identities=20% Similarity=0.220 Sum_probs=233.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCe--EEEEeCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDK--VLPISGDAE 180 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~--v~~v~gDl~ 180 (614)
|+||||||+||||+|.+.+|++.|++ |.+++.-..+.. + ...+ +.+++||+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~---vvV~DNL~~g~~--~---------------------~v~~~~~~f~~gDi~ 54 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHE---VVVLDNLSNGHK--I---------------------ALLKLQFKFYEGDLL 54 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCe---EEEEecCCCCCH--H---------------------HhhhccCceEEeccc
Confidence 68999999999999999999999988 777777655531 1 1122 589999999
Q ss_pred CCCCCCCHHHHHHHhc--cccEEEEcccccChhHHH---HHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-
Q psy6053 181 ADELAIKESDRQLLAS--EVDIMIHGAATIRFDEAL---KKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK- 254 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~~---~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~- 254 (614)
|.. .++++++ ++|.|||+||.....++. -..++.||.||.+|+++|++. ++++|||-||+.+++...
T Consensus 55 D~~------~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~-gv~~~vFSStAavYG~p~~ 127 (329)
T COG1087 55 DRA------LLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQT-GVKKFIFSSTAAVYGEPTT 127 (329)
T ss_pred cHH------HHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHh-CCCEEEEecchhhcCCCCC
Confidence 966 5777776 699999999987665443 357899999999999999995 899999999997777654
Q ss_pred -ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 255 -VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 -~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
+|.|+....|. |+||.||.+.|++++.+.. .+++++++|-.++.|+..+
T Consensus 128 ~PI~E~~~~~p~-----------------------------NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~ 178 (329)
T COG1087 128 SPISETSPLAPI-----------------------------NPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPD 178 (329)
T ss_pred cccCCCCCCCCC-----------------------------CcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCC
Confidence 88888655554 8999999999999999988 7899999999999999765
Q ss_pred C-CccccCCCCchHHHHHHHhcCcee--eEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 333 P-LPGWTDNINGPTGLLIGAGKGVIR--TMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 333 p-~~gw~d~~~g~~~~~~~~~~g~~~--~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
+ +..|..+......++..+..|... .++| ||...+|+|||.|+|++.++|...-.. .....+||++++
T Consensus 179 G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~--~g~~~~~NLG~G- 255 (329)
T COG1087 179 GTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKE--GGSNNIFNLGSG- 255 (329)
T ss_pred CccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHh--CCceeEEEccCC-
Confidence 4 334444444444566666666654 3444 578999999999999999999887653 123469999999
Q ss_pred cccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHH--HHHHHHhCCChHHHHHHHHHHH
Q psy6053 404 EWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFL--DAIIFLSGNKPCLVKIQDRINK 481 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~--d~~~~~~G~~P~~~~l~~ki~~ 481 (614)
+..|..|+++.+.+..|.+.|.......|+. .|..+. +.+.+.+||+|....+.+-++.
T Consensus 256 -~G~SV~evi~a~~~vtg~~ip~~~~~RR~GD------------------pa~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~ 316 (329)
T COG1087 256 -NGFSVLEVIEAAKKVTGRDIPVEIAPRRAGD------------------PAILVADSSKARQILGWQPTYDDLEDIIKD 316 (329)
T ss_pred -CceeHHHHHHHHHHHhCCcCceeeCCCCCCC------------------CceeEeCHHHHHHHhCCCcccCCHHHHHHH
Confidence 8999999999999999999888765556654 244444 4457899999999777777665
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=292.58 Aligned_cols=308 Identities=21% Similarity=0.235 Sum_probs=243.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|++|||||.||||+..++.+++.+++ .+|.+++.-.-... .+-+..+. ..++..+++||+.+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYAgn-~~~l~~~~---------------~~~~~~fv~~DI~D~ 63 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYAGN-LENLADVE---------------DSPRYRFVQGDICDR 63 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEecccccCC-HHHHHhhh---------------cCCCceEEeccccCH
Confidence 57999999999999999999999887 56788776543221 22233221 336899999999996
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhHH---HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc---
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--- 254 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~---~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--- 254 (614)
. .+.++++ ++|+|+|.||..+.+.+ ...++++||.||.+||++|++.....+|+||||.-|+|+..
T Consensus 64 ~------~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~ 137 (340)
T COG1088 64 E------LVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDD 137 (340)
T ss_pred H------HHHHHHHhcCCCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCC
Confidence 6 6888887 59999999999887654 35689999999999999999963335999999998877653
Q ss_pred -ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 255 -VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 -~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
..+|+. |.+| .++|+.||+.++.+++.+.. +|+|++|.|+++-|||++.
T Consensus 138 ~~FtE~t---p~~P--------------------------sSPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqf 188 (340)
T COG1088 138 DAFTETT---PYNP--------------------------SSPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQF 188 (340)
T ss_pred CCcccCC---CCCC--------------------------CCCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcC
Confidence 244542 2222 28999999999999999999 9999999999999999986
Q ss_pred CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
|-. -.--++..++.|...+++|+|.+.+||++|+|-++|+-..+.+.. .+++||++++ +..+--|+
T Consensus 189 pEK-------lIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~-----~GE~YNIgg~--~E~~Nlev 254 (340)
T COG1088 189 PEK-------LIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGK-----IGETYNIGGG--NERTNLEV 254 (340)
T ss_pred chh-------hhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCc-----CCceEEeCCC--ccchHHHH
Confidence 621 111356678889999999999999999999999999998887754 6899999999 77899999
Q ss_pred HHHHhhhcccccC-----CCCccccCCcccccchhHHHHHHHHHhhhHHHHHH--HHHHHhCCChHHHHHHHHHHHHHhh
Q psy6053 413 IDIGKSIVTTEVP-----LNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLD--AIIFLSGNKPCLVKIQDRINKGFEV 485 (614)
Q Consensus 413 ~~~~~~~~g~~~p-----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d--~~~~~~G~~P~~~~l~~ki~~~~~~ 485 (614)
++.+.+.+|...| +....-.|+.. -.+.+| .+.+.+||+|.. .+.+++++ +
T Consensus 255 v~~i~~~l~~~~~~~~~li~~V~DRpGHD------------------~RYaid~~Ki~~eLgW~P~~-~fe~Glrk---T 312 (340)
T COG1088 255 VKTICELLGKDKPDYRDLITFVEDRPGHD------------------RRYAIDASKIKRELGWRPQE-TFETGLRK---T 312 (340)
T ss_pred HHHHHHHhCccccchhhheEeccCCCCCc------------------cceeechHHHhhhcCCCcCC-CHHHHHHH---H
Confidence 9999999999877 33333455432 233344 446899999955 88899888 8
Q ss_pred hhhhhcceEEEec
Q psy6053 486 FEYYANNQWEFRN 498 (614)
Q Consensus 486 ~~~f~~~~w~f~~ 498 (614)
++||..|+|.+..
T Consensus 313 v~WY~~N~~Ww~~ 325 (340)
T COG1088 313 VDWYLDNEWWWEP 325 (340)
T ss_pred HHHHHhchHHHhh
Confidence 8999999987754
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=303.80 Aligned_cols=318 Identities=16% Similarity=0.150 Sum_probs=220.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|||||||||||++|+++|++.|++ |++++|...+.. ..+.+... ..+.....++.++.||+
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~---V~~~d~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~Di 78 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQT---VIGLDNFSTGYQ--HNLDDVRT---------SVSEEQWSRFIFIQGDI 78 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCE---EEEEeCCCCcch--hhhhhhhh---------ccccccCCceEEEEccC
Confidence 56789999999999999999999999876 889988654321 11211110 00000224688999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
.+.. .+..+++++|+|||+||..... .......++|+.||.+++++|++. ++++|||+||..+++...
T Consensus 79 ~d~~------~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~v~~SS~~vyg~~~~~ 151 (348)
T PRK15181 79 RKFT------DCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVSSFTYAASSSTYGDHPDL 151 (348)
T ss_pred CCHH------HHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeechHhhCCCCCC
Confidence 9865 7888889999999999976532 233457899999999999999995 899999999997776432
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+..|+....| .+.|+.||..+|+++..+.+ .+++++++||++|||+.+.|
T Consensus 152 ~~~e~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~ 202 (348)
T PRK15181 152 PKIEERIGRP-----------------------------LSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNP 202 (348)
T ss_pred CCCCCCCCCC-----------------------------CChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCC
Confidence 3333322112 26899999999999998776 69999999999999997654
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
.... . .-...++..+..|....+.+++++.+|++||||+|++++.++..... ...+++||++++ +++|++|++
T Consensus 203 ~~~~-~--~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~--~~~~~~yni~~g--~~~s~~e~~ 275 (348)
T PRK15181 203 NGAY-S--AVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDL--ASKNKVYNVAVG--DRTSLNELY 275 (348)
T ss_pred CCcc-c--cCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccc--cCCCCEEEecCC--CcEeHHHHH
Confidence 2110 0 11234555566666666778999999999999999999887754211 125689999998 889999999
Q ss_pred HHHhhhcccccCC---CCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 414 DIGKSIVTTEVPL---NGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 414 ~~~~~~~g~~~p~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
+.+.+.++...+. ......|.. ..... ....-.+.+.+.+||+|+. .+.+.+.+ .++||.
T Consensus 276 ~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------~~~~d~~k~~~~lGw~P~~-sl~egl~~---~~~w~~ 338 (348)
T PRK15181 276 YLIRDGLNLWRNEQSRAEPIYKDFR---DGDVK----------HSQADITKIKTFLSYEPEF-DIKEGLKQ---TLKWYI 338 (348)
T ss_pred HHHHHHhCcccccccCCCcccCCCC---CCccc----------ccccCHHHHHHHhCCCCCC-CHHHHHHH---HHHHHH
Confidence 9999886632110 000011100 00000 0011234456778999987 67778776 555554
Q ss_pred c
Q psy6053 491 N 491 (614)
Q Consensus 491 ~ 491 (614)
.
T Consensus 339 ~ 339 (348)
T PRK15181 339 D 339 (348)
T ss_pred H
Confidence 3
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=348.15 Aligned_cols=340 Identities=19% Similarity=0.283 Sum_probs=241.7
Q ss_pred hhhHHHHHHHHHHhhcCCCCccccccCCCCchhhhhc---------------------------------------CCcc
Q psy6053 55 CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEEYRN---------------------------------------LPDR 95 (614)
Q Consensus 55 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~~~~---------------------------------------~~~~ 95 (614)
+|+.+++|+..|++.+|..++...+|++||+.+-... ++..
T Consensus 880 dSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 959 (1389)
T TIGR03443 880 HSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLKKGEELADEGDSEIEEEETVLELDYAKDAKTLVDSLPKS 959 (1389)
T ss_pred cHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhhcccccccccccccchhcccccchhhhhhhhhhhccccc
Confidence 8888888888888888888888888888887642110 0000
Q ss_pred cc-----cccCCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhcccccc
Q psy6053 96 IG-----ETFTGKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKII 169 (614)
Q Consensus 96 i~-----~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~ 169 (614)
.. ..-..++|||||||||+|++|+++|++++ ....+|+|++|..+..+..+|+.+.+..+.. ..+. ..
T Consensus 960 ~~~~~~~~~~~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~-----~~~~-~~ 1033 (1389)
T TIGR03443 960 YPSRKELDASTPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGI-----WDEE-WA 1033 (1389)
T ss_pred CCcccccccCCCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCC-----Cchh-hh
Confidence 00 01125799999999999999999999986 1245799999988766667777654432211 0111 33
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
.+++++.||++++.+||+++.+..+.+++|+|||+||.+++..++..+...|+.||.+++++|.+ .++++|+|+||..+
T Consensus 1034 ~~i~~~~gDl~~~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~-~~~~~~v~vSS~~v 1112 (1389)
T TIGR03443 1034 SRIEVVLGDLSKEKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAE-GKAKQFSFVSSTSA 1112 (1389)
T ss_pred cceEEEeccCCCccCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHh-CCCceEEEEeCeee
Confidence 58999999999999999999999999999999999999999888888888999999999999998 48899999999987
Q ss_pred ccCCccc--ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceee
Q psy6053 250 HLQEKVL--YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIII 327 (614)
Q Consensus 250 ~~~~~~i--~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~ 327 (614)
++..... .+........ .+.++. .........+++|+.||+++|+++..+.+.|++++|+|||+|+
T Consensus 1113 ~~~~~~~~~~~~~~~~~~~---------~~~e~~---~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~ 1180 (1389)
T TIGR03443 1113 LDTEYYVNLSDELVQAGGA---------GIPESD---DLMGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVT 1180 (1389)
T ss_pred cCcccccchhhhhhhccCC---------CCCccc---ccccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 7532110 0000000000 000000 0000011235789999999999999877679999999999999
Q ss_pred cccCCCCccccCCCCchHHHHHHHhcCcee-eEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc
Q psy6053 328 PVWREPLPGWTDNINGPTGLLIGAGKGVIR-TMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ 406 (614)
Q Consensus 328 g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~-~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~ 406 (614)
|+...+. | ....++..+.++... ...++.....|++||||+|++++.++.+... .....+||++++ .+
T Consensus 1181 G~~~~g~--~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~--~~~~~i~~~~~~--~~ 1249 (1389)
T TIGR03443 1181 GDSKTGA--T-----NTDDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPPK--ESELAVAHVTGH--PR 1249 (1389)
T ss_pred cCCCcCC--C-----CchhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCcc--cCCCCEEEeCCC--CC
Confidence 9876431 2 222344444333211 1233556679999999999999998865421 013469999988 78
Q ss_pred ccHHHHHHHHhhhcccccC
Q psy6053 407 VSWQEIIDIGKSIVTTEVP 425 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~~p 425 (614)
++|.++++.+.+. |.+.+
T Consensus 1250 ~~~~~~~~~l~~~-g~~~~ 1267 (1389)
T TIGR03443 1250 IRFNDFLGTLKTY-GYDVE 1267 (1389)
T ss_pred CcHHHHHHHHHHh-CCCCC
Confidence 9999999999876 76544
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=290.32 Aligned_cols=256 Identities=22% Similarity=0.226 Sum_probs=198.0
Q ss_pred EEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCCC
Q psy6053 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELA 185 (614)
Q Consensus 106 LITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lG 185 (614)
||||||||||++|+++|+++|+ +.+|.+++|..+..... .. . ..+...++.||+++++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~----~~--------------~-~~~~~~~~~~Di~d~~-- 58 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLK----DL--------------Q-KSGVKEYIQGDITDPE-- 58 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccch----hh--------------h-cccceeEEEeccccHH--
Confidence 6999999999999999999986 45799999876543210 00 0 2233449999999977
Q ss_pred CCHHHHHHHhccccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccC---Cccc---c
Q psy6053 186 IKESDRQLLASEVDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQ---EKVL---Y 257 (614)
Q Consensus 186 Ls~~~~~~l~~~vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~---~~~i---~ 257 (614)
++.++++++|+|||+||.+... .+.+..+++||.||++++++|++ .++++|||+||..+..+ ..++ +
T Consensus 59 ----~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~-~~VkrlVytSS~~vv~~~~~~~~~~~~d 133 (280)
T PF01073_consen 59 ----SLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARK-AGVKRLVYTSSISVVFDNYKGDPIINGD 133 (280)
T ss_pred ----HHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcCcceeEeccCCCCcccCC
Confidence 8999999999999999987664 35677999999999999999999 59999999999987665 2222 2
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCCCEEEeecceeecccC
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~glp~~IvRp~~I~g~~~ 331 (614)
|... .| ..+.+.|+.||++||+++.++.. ..+.++++||+.|||+.+
T Consensus 134 E~~~-~~--------------------------~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d 186 (280)
T PF01073_consen 134 EDTP-YP--------------------------SSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGD 186 (280)
T ss_pred cCCc-cc--------------------------ccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCccc
Confidence 3211 11 12347999999999999999875 349999999999999976
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhc---CCCCccEEEeccCCccccc
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ---KEHRQSIVHLTSSQEWQVS 408 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~---~~~~~~vyni~~~~~~~it 408 (614)
..+ ...+...+..|......++++...++++|++||.+++.|+..-... ....+++|+|+++ +|+.
T Consensus 187 ~~~---------~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~--~p~~ 255 (280)
T PF01073_consen 187 QRL---------VPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDG--EPVP 255 (280)
T ss_pred ccc---------cchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECC--CccC
Confidence 321 1123333445555566788889999999999999999988754321 2347899999999 8999
Q ss_pred -HHHHHHHHhhhcccccCC
Q psy6053 409 -WQEIIDIGKSIVTTEVPL 426 (614)
Q Consensus 409 -~~e~~~~~~~~~g~~~p~ 426 (614)
+.||...+.+.+|.+.|.
T Consensus 256 ~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 256 SFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred cHHHHHHHHHHHCCCCCCc
Confidence 999999999998997664
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=286.28 Aligned_cols=280 Identities=23% Similarity=0.277 Sum_probs=205.1
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|||||||||+|++|+++|+++|+. .+|+|++|+.+.....+|+++.+...... .......+++++.||++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~v~~~~~D~~~~~ 74 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQ-AKVICLVRAASEEHAMERLREALRSYRLW-----QEDLARERIEVVAGDLSEPR 74 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCC-CEEEEEEccCCHHHHHHHHHHHHHHhCCC-----CchhhhCCEEEEeCCcCccc
Confidence 5899999999999999999999854 46999999877655667777654422110 00001158999999999999
Q ss_pred CCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--ccccccC
Q psy6053 184 LAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VLYEKPY 261 (614)
Q Consensus 184 lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i~E~~~ 261 (614)
+||+++++..+.+++|+|||+||.+++..+++...+.|+.|+.+++++|.+ .+.++|||+||.++++... .+.|...
T Consensus 75 ~gl~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~-~~~~~~v~iSS~~v~~~~~~~~~~~~~~ 153 (367)
T TIGR01746 75 LGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAAS-GRAKPLHYVSTISVLAAIDLSTVTEDDA 153 (367)
T ss_pred CCcCHHHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhh-CCCceEEEEccccccCCcCCCCcccccc
Confidence 999999999999999999999999988888888999999999999999999 4788899999998776432 1122110
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~ 341 (614)
..+ ......++|+.||+.+|+++.++...|++++++|||.|+|+...+ .|...
T Consensus 154 ~~~------------------------~~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g--~~~~~- 206 (367)
T TIGR01746 154 IVT------------------------PPPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYTG--AINSS- 206 (367)
T ss_pred ccc------------------------cccccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCCC--CCCch-
Confidence 000 001224789999999999999877679999999999999984432 11111
Q ss_pred CchHHHHHHHh-cCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhc
Q psy6053 342 NGPTGLLIGAG-KGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIV 420 (614)
Q Consensus 342 ~g~~~~~~~~~-~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~ 420 (614)
.....++.... .|. .+.......+++||||+|++++.++..... ...+++||++++ ++++|+|+++.+.+ +
T Consensus 207 ~~~~~~~~~~~~~~~---~p~~~~~~~~~~~vddva~ai~~~~~~~~~--~~~~~~~~v~~~--~~~s~~e~~~~i~~-~ 278 (367)
T TIGR01746 207 DILWRMVKGCLALGA---YPDSPELTEDLTPVDYVARAIVALSSQPAA--SAGGPVFHVVNP--EPVSLDEFLEWLER-A 278 (367)
T ss_pred hHHHHHHHHHHHhCC---CCCCCccccCcccHHHHHHHHHHHHhCCCc--ccCCceEEecCC--CCCCHHHHHHHHHH-c
Confidence 11112222221 121 122222467899999999999998865431 012789999998 89999999999999 5
Q ss_pred ccccC
Q psy6053 421 TTEVP 425 (614)
Q Consensus 421 g~~~p 425 (614)
|.+.+
T Consensus 279 g~~~~ 283 (367)
T TIGR01746 279 GYNLK 283 (367)
T ss_pred CCCCC
Confidence 87543
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=288.78 Aligned_cols=289 Identities=15% Similarity=0.065 Sum_probs=196.0
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc-C-------------HHHHHHHHHhChhhHHh
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK-N-------------ARQRIEELFASPLFNLL 160 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~-~-------------~~~Rl~~~~~~~~f~~l 160 (614)
..+.-.++|+|||||||||||++|+++|++.|++ |++++|..... . ..++++....
T Consensus 40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 109 (442)
T PLN02572 40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYE---VAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKE------- 109 (442)
T ss_pred CCCccccCCEEEEECCCcHHHHHHHHHHHHCCCe---EEEEeccccccccccccccccccccchHHHHHHHHH-------
Confidence 4455677899999999999999999999999877 77776432111 0 0122221100
Q ss_pred hhhccccccCeEEEEeCCCCCCCCCCCHHHHHHHhc--cccEEEEcccccChhH------HHHHHHHHhHHHHHHHHHHH
Q psy6053 161 KSVHGQKIIDKVLPISGDAEADELAIKESDRQLLAS--EVDIMIHGAATIRFDE------ALKKAVLLNTRGTKMMLSLA 232 (614)
Q Consensus 161 ~~~~p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~------~~~~~~~~Nv~gt~~ll~la 232 (614)
. ...+++++.+|+++++ .+..+++ ++|+|||+||...... .....+++|+.||.+++++|
T Consensus 110 -----~-~~~~v~~v~~Dl~d~~------~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa 177 (442)
T PLN02572 110 -----V-SGKEIELYVGDICDFE------FLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAI 177 (442)
T ss_pred -----h-hCCcceEEECCCCCHH------HHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 0 1236889999999876 7777777 5899999998743221 12345789999999999999
Q ss_pred HHcCCCc-eEEEEeCceeccCC-cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH
Q psy6053 233 KEMKHLE-LFVHISTAYCHLQE-KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE 310 (614)
Q Consensus 233 ~~~~~~k-~~V~vST~~~~~~~-~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~ 310 (614)
++. +++ +|||+||..+++.. .+++|...+. +. ...++. +.......+.|+.||..+|.++..
T Consensus 178 ~~~-gv~~~~V~~SS~~vYG~~~~~~~E~~i~~--~~--------~~~e~~-----~~~~~~P~s~Yg~SK~a~E~l~~~ 241 (442)
T PLN02572 178 KEF-APDCHLVKLGTMGEYGTPNIDIEEGYITI--TH--------NGRTDT-----LPYPKQASSFYHLSKVHDSHNIAF 241 (442)
T ss_pred HHh-CCCccEEEEecceecCCCCCCCccccccc--cc--------cccccc-----ccCCCCCCCcchhHHHHHHHHHHH
Confidence 995 675 89999999888743 2333331100 00 000000 000001126899999999999998
Q ss_pred Hhh-CCCCEEEeecceeecccCCCC--cccc------CCC-Cc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHH
Q psy6053 311 AMN-NGMPCLMLRPSIIIPVWREPL--PGWT------DNI-NG-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGI 379 (614)
Q Consensus 311 ~~~-~glp~~IvRp~~I~g~~~~p~--~gw~------d~~-~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~ai 379 (614)
+.+ .|++++++||++|||+++.+. ..+. ++. .+ ...++..+..|....+++++++.+|+++|||+|+++
T Consensus 242 ~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~ 321 (442)
T PLN02572 242 TCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCI 321 (442)
T ss_pred HHHhcCCCEEEEecccccCCCCcccccccccccccCcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHH
Confidence 877 799999999999999986431 0010 010 11 223455566676556678999999999999999999
Q ss_pred HHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhh---cccccCC
Q psy6053 380 FVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSI---VTTEVPL 426 (614)
Q Consensus 380 i~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~---~g~~~p~ 426 (614)
+.++..... .....+||+++. ++|++|+++.+.+. +|.+.++
T Consensus 322 ~~al~~~~~--~g~~~i~Nigs~---~~si~el~~~i~~~~~~~g~~~~~ 366 (442)
T PLN02572 322 EIAIANPAK--PGEFRVFNQFTE---QFSVNELAKLVTKAGEKLGLDVEV 366 (442)
T ss_pred HHHHhChhh--cCceeEEEeCCC---ceeHHHHHHHHHHHHHhhCCCCCe
Confidence 999875421 012368999753 59999999999998 7765443
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=304.14 Aligned_cols=264 Identities=25% Similarity=0.365 Sum_probs=197.7
Q ss_pred cEEEEecccccccHHHHHHHHh--hCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILR--KSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~--~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
|+|||||||||||++|+++|++ .|+ +|++++|... .+++.++... . ...+++++.||++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~---~V~~l~R~~~----~~~~~~~~~~---------~---~~~~v~~~~~Dl~ 61 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA---TVHVLVRRQS----LSRLEALAAY---------W---GADRVVPLVGDLT 61 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC---EEEEEECcch----HHHHHHHHHh---------c---CCCcEEEEecccC
Confidence 5899999999999999999995 544 4999999542 2333332110 0 1157899999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-ccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-VLYEK 259 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-~i~E~ 259 (614)
++++|++.+.++.+ +++|+||||||.+++..+.....++|+.||.+++++|++. ++++|||+||..+++... ..+|+
T Consensus 62 ~~~~~~~~~~~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~~SS~~v~g~~~~~~~e~ 139 (657)
T PRK07201 62 EPGLGLSEADIAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERL-QAATFHHVSSIAVAGDYEGVFRED 139 (657)
T ss_pred CccCCcCHHHHHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhc-CCCeEEEEeccccccCccCccccc
Confidence 99999999988888 8999999999988877677778899999999999999995 789999999998876432 23332
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccC
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTD 339 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d 339 (614)
..+.+ ...+++|+.||+.+|+++.+. .|++++|+||++|||+... |..+
T Consensus 140 ~~~~~--------------------------~~~~~~Y~~sK~~~E~~~~~~--~g~~~~ilRp~~v~G~~~~---g~~~ 188 (657)
T PRK07201 140 DFDEG--------------------------QGLPTPYHRTKFEAEKLVREE--CGLPWRVYRPAVVVGDSRT---GEMD 188 (657)
T ss_pred cchhh--------------------------cCCCCchHHHHHHHHHHHHHc--CCCcEEEEcCCeeeecCCC---Cccc
Confidence 11110 123478999999999999753 3899999999999998653 3333
Q ss_pred CCCchHH---HHHHHhcC-ceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 340 NINGPTG---LLIGAGKG-VIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 340 ~~~g~~~---~~~~~~~g-~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
+..++.. ++...... ....+.+.+....+++||||++++++.++.... ..+++||++++ +++++.|+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~----~~g~~~ni~~~--~~~s~~el~~~ 262 (657)
T PRK07201 189 KIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDG----RDGQTFHLTDP--KPQRVGDIYNA 262 (657)
T ss_pred cCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcC----CCCCEEEeCCC--CCCcHHHHHHH
Confidence 3333332 22222111 111234556677899999999999998876433 25789999998 88999999999
Q ss_pred Hhhhccccc
Q psy6053 416 GKSIVTTEV 424 (614)
Q Consensus 416 ~~~~~g~~~ 424 (614)
+.+.+|.+.
T Consensus 263 i~~~~g~~~ 271 (657)
T PRK07201 263 FARAAGAPP 271 (657)
T ss_pred HHHHhCCCc
Confidence 999988754
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=283.08 Aligned_cols=340 Identities=16% Similarity=0.135 Sum_probs=215.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+.|+|||||||||||++|+++|+++| ++ |++++|.... ...+.... .+. ...+++++.||
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~---V~~l~r~~~~------~~~l~~~~--------~~~-~~~~~~~~~~D 73 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHK---VLALDVYNDK------IKHLLEPD--------TVP-WSGRIQFHRIN 73 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCE---EEEEecCchh------hhhhhccc--------ccc-CCCCeEEEEcC
Confidence 345899999999999999999999984 54 8888886422 11111000 001 22479999999
Q ss_pred CCCCCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-
Q psy6053 179 AEADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK- 254 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~- 254 (614)
+.++. .+..+++++|+|||+||.+.. .......+..|+.||.+++++|++. + ++|||+||.++++...
T Consensus 74 l~d~~------~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~-~r~v~~SS~~vYg~~~~ 145 (386)
T PLN02427 74 IKHDS------RLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N-KRLIHFSTCEVYGKTIG 145 (386)
T ss_pred CCChH------HHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C-CEEEEEeeeeeeCCCcC
Confidence 99865 788888999999999997543 2222345678999999999999984 5 8999999998877532
Q ss_pred -ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 255 -VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 -~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
.++|+....+. +... -.+++ .............+.|+.||..+|+++..+.+ .|++++|+||++|||+...
T Consensus 146 ~~~~e~~p~~~~-~~~~-----~~~e~-~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~ 218 (386)
T PLN02427 146 SFLPKDHPLRQD-PAFY-----VLKED-ESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 218 (386)
T ss_pred CCCCcccccccc-cccc-----ccccc-ccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCC
Confidence 23333211100 0000 00000 00000000011236899999999999998766 6999999999999999865
Q ss_pred CCcccc---CCCCchH-HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccccc
Q psy6053 333 PLPGWT---DNINGPT-GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVS 408 (614)
Q Consensus 333 p~~gw~---d~~~g~~-~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it 408 (614)
..+|-. +...... .++..+..|....+.+++++.+|++||||+|++++.++.+... ..+++||+++++ ++++
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~---~~g~~yni~~~~-~~~s 294 (386)
T PLN02427 219 FIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPAR---ANGHIFNVGNPN-NEVT 294 (386)
T ss_pred ccccccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCccc---ccCceEEeCCCC-CCcc
Confidence 433210 0111111 2334455666556677888899999999999999998876421 146799999861 3799
Q ss_pred HHHHHHHHhhhccccc--CC-CC-ccccCCcccccchhHHHHHHHHHhhhHHHH--HHHHHHHhCCChHHHHHHHHHHHH
Q psy6053 409 WQEIIDIGKSIVTTEV--PL-NG-CVWYPGGSMKSNRLLHQICVIFFHMIPAYF--LDAIIFLSGNKPCLVKIQDRINKG 482 (614)
Q Consensus 409 ~~e~~~~~~~~~g~~~--p~-~~-~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~--~d~~~~~~G~~P~~~~l~~ki~~~ 482 (614)
+.|+++.+.+.+|... |. .. ....|........+. -..... .+.+.+.+||+|+. .+.+.+.+
T Consensus 295 ~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~k~~~~lGw~p~~-~l~~gl~~- 363 (386)
T PLN02427 295 VRQLAEMMTEVYAKVSGEPALEEPTVDVSSKEFYGEGYD---------DSDKRIPDMTIINKQLGWNPKT-SLWDLLES- 363 (386)
T ss_pred HHHHHHHHHHHhccccccccccccccccCcccccCcccc---------chhhccCCHHHHHHhcCCCcCc-cHHHHHHH-
Confidence 9999999999877421 11 00 011111000000000 011112 24456788999988 78888887
Q ss_pred Hhhhhhh
Q psy6053 483 FEVFEYY 489 (614)
Q Consensus 483 ~~~~~~f 489 (614)
+++|+
T Consensus 364 --~~~~~ 368 (386)
T PLN02427 364 --TLTYQ 368 (386)
T ss_pred --HHHHH
Confidence 45554
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=280.82 Aligned_cols=310 Identities=17% Similarity=0.197 Sum_probs=213.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.|+++ |.+..|..+... ..++... . ...++.++.+|++++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~--v~~~~~~~~~~~-~~~~~~~--------------~-~~~~~~~~~~Dl~d~ 63 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDA--VVVVDKLTYAGN-LMSLAPV--------------A-QSERFAFEKVDICDR 63 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCE--EEEEecCccccc-hhhhhhc--------------c-cCCceEEEECCCcCh
Confidence 689999999999999999999998762 434444322111 1111110 0 123678899999987
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHc--------CCCceEEEEeCcee
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEM--------KHLELFVHISTAYC 249 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~--------~~~k~~V~vST~~~ 249 (614)
+ .++.+++ ++|+|||+||..... +.....+++|+.||.+++++|.+. +++++|||+||..+
T Consensus 64 ~------~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~v 137 (355)
T PRK10217 64 A------ELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEV 137 (355)
T ss_pred H------HHHHHHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhh
Confidence 6 7777777 489999999986543 234678899999999999999863 35689999999877
Q ss_pred ccCC----cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecc
Q psy6053 250 HLQE----KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPS 324 (614)
Q Consensus 250 ~~~~----~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~ 324 (614)
++.. .+++|+....| .+.|+.||..+|+++..+.+ .+++++++||+
T Consensus 138 yg~~~~~~~~~~E~~~~~p-----------------------------~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~ 188 (355)
T PRK10217 138 YGDLHSTDDFFTETTPYAP-----------------------------SSPYSASKASSDHLVRAWLRTYGLPTLITNCS 188 (355)
T ss_pred cCCCCCCCCCcCCCCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHhCCCeEEEeee
Confidence 6632 24556532222 26899999999999998865 69999999999
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCc
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQE 404 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~ 404 (614)
+|||+...|- .....++.....|....+++++++.+|++||+|+|++++.++.... .+++||++++
T Consensus 189 ~v~Gp~~~~~-------~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~-----~~~~yni~~~-- 254 (355)
T PRK10217 189 NNYGPYHFPE-------KLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATTGK-----VGETYNIGGH-- 254 (355)
T ss_pred eeeCCCCCcc-------cHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhcCC-----CCCeEEeCCC--
Confidence 9999975320 1122344555666555567899999999999999999998886532 5689999999
Q ss_pred ccccHHHHHHHHhhhcccccCCCC-cc-ccCC-cccccchhHHHHHHHHHhhhHHHHHH--HHHHHhCCChHHHHHHHHH
Q psy6053 405 WQVSWQEIIDIGKSIVTTEVPLNG-CV-WYPG-GSMKSNRLLHQICVIFFHMIPAYFLD--AIIFLSGNKPCLVKIQDRI 479 (614)
Q Consensus 405 ~~it~~e~~~~~~~~~g~~~p~~~-~~-~~p~-~~~~~~~~~~~~~~~~~~~~pa~~~d--~~~~~~G~~P~~~~l~~ki 479 (614)
+++|+.|+++.+.+.+|...|... .. +.+. ......+. ...+.+..| .+...+||+|.. .+.+.+
T Consensus 255 ~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~d~~k~~~~lg~~p~~-~l~e~l 324 (355)
T PRK10217 255 NERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRP---------GHDLRYAIDASKIARELGWLPQE-TFESGM 324 (355)
T ss_pred CcccHHHHHHHHHHHhcccccccccccccccccceecCCCC---------CCCcccccCHHHHHHhcCCCCcC-cHHHHH
Confidence 899999999999998775332110 00 0000 00000000 001222334 345778999986 777777
Q ss_pred HHHHhhhhhhhcc
Q psy6053 480 NKGFEVFEYYANN 492 (614)
Q Consensus 480 ~~~~~~~~~f~~~ 492 (614)
.+ +++||..+
T Consensus 325 ~~---~~~~~~~~ 334 (355)
T PRK10217 325 RK---TVQWYLAN 334 (355)
T ss_pred HH---HHHHHHhC
Confidence 76 56677643
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=286.62 Aligned_cols=297 Identities=16% Similarity=0.168 Sum_probs=213.4
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++|+++|+++|++ |++++|...+. .+.+.... ...+++++.+|+.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~---V~~ldr~~~~~--~~~~~~~~---------------~~~~~~~~~~Di~ 178 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDE---VIVIDNFFTGR--KENLVHLF---------------GNPRFELIRHDVV 178 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCE---EEEEeCCCCcc--HhHhhhhc---------------cCCceEEEECccc
Confidence 3589999999999999999999999877 88888864321 11111110 1136788999997
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
++. +.++|+|||+||.... ..+....+++|+.||.+++++|++. +. +|||+||.+++++.. +
T Consensus 179 ~~~-----------~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g~-r~V~~SS~~VYg~~~~~p 245 (436)
T PLN02166 179 EPI-----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLEHP 245 (436)
T ss_pred ccc-----------ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECcHHHhCCCCCCC
Confidence 653 2479999999996542 2334577899999999999999995 54 899999998877532 4
Q ss_pred cccccCC--CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 256 LYEKPYP--PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 256 i~E~~~~--~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
++|+.+. .|.++ .+.|+.||..+|+++..+.+ .+++++++||++|||+...
T Consensus 246 ~~E~~~~~~~p~~p--------------------------~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~ 299 (436)
T PLN02166 246 QKETYWGNVNPIGE--------------------------RSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMC 299 (436)
T ss_pred CCccccccCCCCCC--------------------------CCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCC
Confidence 5554221 12111 26899999999999999876 6899999999999998753
Q ss_pred CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
+..+ .-...++..+..|....+++++++.+|+++|+|+|++++.++... ..++||++++ +++|+.|+
T Consensus 300 ~~~~-----~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~------~~giyNIgs~--~~~Si~el 366 (436)
T PLN02166 300 LDDG-----RVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGE------HVGPFNLGNP--GEFTMLEL 366 (436)
T ss_pred CCcc-----chHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcC------CCceEEeCCC--CcEeHHHH
Confidence 2110 112346666677766667788999999999999999999888542 3469999998 88999999
Q ss_pred HHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhh
Q psy6053 413 IDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYY 489 (614)
Q Consensus 413 ~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f 489 (614)
++.+.+.+|.+.++. +.|... ..... ...-.+.+.+++||+|+. .+.+.+.. .++||
T Consensus 367 a~~I~~~~g~~~~i~---~~p~~~---~~~~~----------~~~d~~Ka~~~LGw~P~~-sl~egl~~---~i~~~ 423 (436)
T PLN02166 367 AEVVKETIDSSATIE---FKPNTA---DDPHK----------RKPDISKAKELLNWEPKI-SLREGLPL---MVSDF 423 (436)
T ss_pred HHHHHHHhCCCCCee---eCCCCC---CCccc----------cccCHHHHHHHcCCCCCC-CHHHHHHH---HHHHH
Confidence 999999988654332 333211 10000 011234556789999987 68888876 44555
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=303.65 Aligned_cols=311 Identities=18% Similarity=0.213 Sum_probs=218.9
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.+|++|+|||||||||||++|+++|++.|++ .+|++++|....... .++... . ...+++++.|
T Consensus 2 ~~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~-~~V~~~d~~~~~~~~-~~l~~~--------------~-~~~~v~~~~~ 64 (668)
T PLN02260 2 ATYEPKNILITGAAGFIASHVANRLIRNYPD-YKIVVLDKLDYCSNL-KNLNPS--------------K-SSPNFKFVKG 64 (668)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHhCCC-CEEEEEeCCCccchh-hhhhhc--------------c-cCCCeEEEEC
Confidence 5789999999999999999999999998655 358888875322111 111100 0 2357899999
Q ss_pred CCCCCCCCCCHHHHHHHh--ccccEEEEcccccChhHH---HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccC
Q psy6053 178 DAEADELAIKESDRQLLA--SEVDIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQ 252 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~--~~vd~ViH~AA~v~~~~~---~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~ 252 (614)
|+++++ .+..++ .++|+|||+||....+.. .....++|+.||.+++++|++.+.+++|||+||..+++.
T Consensus 65 Dl~d~~------~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~ 138 (668)
T PLN02260 65 DIASAD------LVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE 138 (668)
T ss_pred CCCChH------HHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCC
Confidence 999875 455443 579999999998765432 346789999999999999999645899999999988765
Q ss_pred Ccc-----cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeeccee
Q psy6053 253 EKV-----LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSII 326 (614)
Q Consensus 253 ~~~-----i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I 326 (614)
... .+|+.... ..+.|+.||..+|+++..+.. .+++++|+||++|
T Consensus 139 ~~~~~~~~~~E~~~~~-----------------------------p~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~V 189 (668)
T PLN02260 139 TDEDADVGNHEASQLL-----------------------------PTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNV 189 (668)
T ss_pred CccccccCccccCCCC-----------------------------CCCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 431 11221111 137899999999999998876 6999999999999
Q ss_pred ecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc
Q psy6053 327 IPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ 406 (614)
Q Consensus 327 ~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~ 406 (614)
||+.+.+ .. -...++..+..|....+++++++.++++||+|+|+++..++.... .+++||++++ ++
T Consensus 190 yGp~~~~-----~~--~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~~-----~~~vyni~~~--~~ 255 (668)
T PLN02260 190 YGPNQFP-----EK--LIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGE-----VGHVYNIGTK--KE 255 (668)
T ss_pred cCcCCCc-----cc--HHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcCC-----CCCEEEECCC--Ce
Confidence 9997532 01 112344455666655677889999999999999999998875432 5689999998 88
Q ss_pred ccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHH-HHHhCCChHHHHHHHHHHHHHhh
Q psy6053 407 VSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAI-IFLSGNKPCLVKIQDRINKGFEV 485 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~-~~~~G~~P~~~~l~~ki~~~~~~ 485 (614)
+++.|+++.+.+.+|.+.+.. ..+.+...... ..+.+|.. ++.+||+|.. .+.+.+.+ .
T Consensus 256 ~s~~el~~~i~~~~g~~~~~~-i~~~~~~p~~~---------------~~~~~d~~k~~~lGw~p~~-~~~egl~~---~ 315 (668)
T PLN02260 256 RRVIDVAKDICKLFGLDPEKS-IKFVENRPFND---------------QRYFLDDQKLKKLGWQERT-SWEEGLKK---T 315 (668)
T ss_pred eEHHHHHHHHHHHhCCCCcce-eeecCCCCCCc---------------ceeecCHHHHHHcCCCCCC-CHHHHHHH---H
Confidence 999999999999888653211 11111111000 01111221 2458999985 67788776 5
Q ss_pred hhhhhcceE
Q psy6053 486 FEYYANNQW 494 (614)
Q Consensus 486 ~~~f~~~~w 494 (614)
++||..+.+
T Consensus 316 i~w~~~~~~ 324 (668)
T PLN02260 316 MEWYTSNPD 324 (668)
T ss_pred HHHHHhChh
Confidence 566665543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-31 Score=279.44 Aligned_cols=265 Identities=15% Similarity=0.112 Sum_probs=190.2
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+|||||||||+|++|+++|++. |++ |++++|+.. +...+. ...+++++.+|+.+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~---V~~~~r~~~------~~~~~~---------------~~~~~~~~~~Dl~~ 57 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWE---VYGMDMQTD------RLGDLV---------------NHPRMHFFEGDITI 57 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCe---EEEEeCcHH------HHHHhc---------------cCCCeEEEeCCCCC
Confidence 68999999999999999999986 455 899988542 111110 12468999999984
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--cc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VL 256 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i 256 (614)
+. +.+..+++++|+|||+||.... ..+.....++|+.||.+++++|++. + ++|||+||..+++... ++
T Consensus 58 ~~-----~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~-~~~v~~SS~~vyg~~~~~~~ 130 (347)
T PRK11908 58 NK-----EWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYGMCPDEEF 130 (347)
T ss_pred CH-----HHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C-CeEEEEecceeeccCCCcCc
Confidence 22 2577788899999999997542 2334567899999999999999995 5 7999999998876432 33
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~ 335 (614)
.|+..+.+.. | .....+.|+.||..+|+++..+.. .+++++++||+.|||+...+..
T Consensus 131 ~ee~~~~~~~--------------------~--~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~ 188 (347)
T PRK11908 131 DPEASPLVYG--------------------P--INKPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIY 188 (347)
T ss_pred CccccccccC--------------------c--CCCccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCC
Confidence 3332110000 0 001126799999999999999876 7999999999999999765421
Q ss_pred cccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 336 GWTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 336 gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
.-.+.... ...++..+..|....+.+++++.+|++||+|+|++++.++.+... ...+++||++++. +.+|++|+++
T Consensus 189 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~--~~~g~~yni~~~~-~~~s~~e~~~ 265 (347)
T PRK11908 189 TPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDG--VASGKIYNIGNPK-NNHSVRELAN 265 (347)
T ss_pred ccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCccc--cCCCCeEEeCCCC-CCcCHHHHHH
Confidence 10001111 223555566666555667888999999999999999998876421 0146899999851 4799999999
Q ss_pred HHhhhcccc
Q psy6053 415 IGKSIVTTE 423 (614)
Q Consensus 415 ~~~~~~g~~ 423 (614)
.+.+.+|..
T Consensus 266 ~i~~~~~~~ 274 (347)
T PRK11908 266 KMLELAAEY 274 (347)
T ss_pred HHHHHhcCc
Confidence 999987753
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=275.38 Aligned_cols=311 Identities=15% Similarity=0.162 Sum_probs=205.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|||||||||||++|+++|++.|++ |++++|..........+..+ + ...+++++.||+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~-------------~--~~~~~~~~~~Dl 68 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYA---VNTTVRDPENQKKIAHLRAL-------------Q--ELGDLKIFGADL 68 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCE---EEEEECCCCCHHHHHHHHhc-------------C--CCCceEEEEcCC
Confidence 45789999999999999999999999876 88888875432111101000 0 113688999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC----
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE---- 253 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~---- 253 (614)
++++ ++..+++++|+|||+||...+. .+....+++|+.|+.+++++|.+..++++|||+||..+++..
T Consensus 69 ~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~ 142 (338)
T PLN00198 69 TDEE------SFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSG 142 (338)
T ss_pred CChH------HHHHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCC
Confidence 9876 7888888999999999976542 334456799999999999999885468999999999776532
Q ss_pred --cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 254 --KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 254 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
.+++|+.... +..++... ...++|+.||..+|++++.+.+ .|++++++||++|||+.
T Consensus 143 ~~~~~~E~~~~~---------------~~~~~~~~-----~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 143 TGLVMNEKNWTD---------------VEFLTSEK-----PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred CCceeccccCCc---------------hhhhhhcC-----CccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 2344442110 00000000 1125799999999999999877 69999999999999997
Q ss_pred CCCCccccCCCCchHHHHHHHhcCceeeEee-CC----CccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVIRTMFC-DN----TGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW 405 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~-~~----~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~ 405 (614)
+.+. ......++..+..|....+.+ ++ +..+|++||||+|++++.++.... .++.|+ +++ .
T Consensus 203 ~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~-----~~~~~~-~~~--~ 268 (338)
T PLN00198 203 LTSD------IPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKES-----ASGRYI-CCA--A 268 (338)
T ss_pred ccCC------CCCcHHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCcC-----cCCcEE-Eec--C
Confidence 6431 111112333444444322222 11 234799999999999999887643 234675 445 5
Q ss_pred cccHHHHHHHHhhhccc-ccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHH--HHHHHHhCCChHHHHHHHHHHHH
Q psy6053 406 QVSWQEIIDIGKSIVTT-EVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFL--DAIIFLSGNKPCLVKIQDRINKG 482 (614)
Q Consensus 406 ~it~~e~~~~~~~~~g~-~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~--d~~~~~~G~~P~~~~l~~ki~~~ 482 (614)
++++.|+++.+.+.++. +.|... ...|. .+.... +.+.. +||+|+. .+.+.+.+
T Consensus 269 ~~s~~el~~~i~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~k~~~-~G~~p~~-~l~~gi~~- 325 (338)
T PLN00198 269 NTSVPELAKFLIKRYPQYQVPTDF-GDFPS-------------------KAKLIISSEKLIS-EGFSFEY-GIEEIYDQ- 325 (338)
T ss_pred CCCHHHHHHHHHHHCCCCCCCccc-cccCC-------------------CCccccChHHHHh-CCceecC-cHHHHHHH-
Confidence 68999999999887543 222211 00110 011112 22334 5999998 68888886
Q ss_pred Hhhhhhhhcce
Q psy6053 483 FEVFEYYANNQ 493 (614)
Q Consensus 483 ~~~~~~f~~~~ 493 (614)
+++||..+.
T Consensus 326 --~~~~~~~~~ 334 (338)
T PLN00198 326 --TVEYFKAKG 334 (338)
T ss_pred --HHHHHHHcC
Confidence 555665443
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=283.15 Aligned_cols=298 Identities=16% Similarity=0.145 Sum_probs=211.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|||||||||||++|++.|+++|++ |++++|...+. .+++...+ ...+++++.+|+
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~---V~~ld~~~~~~--~~~~~~~~---------------~~~~~~~i~~D~ 176 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS---VIVVDNFFTGR--KENVMHHF---------------SNPNFELIRHDV 176 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCE---EEEEeCCCccc--hhhhhhhc---------------cCCceEEEECCc
Confidence 35789999999999999999999999876 78888754321 11111110 224678899998
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
.++. +.++|+|||+||.... ..+....+++|+.||.+++++|++. +. +|||+||..+++...
T Consensus 177 ~~~~-----------l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g~-r~V~~SS~~VYg~~~~~ 243 (442)
T PLN02206 177 VEPI-----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLQH 243 (442)
T ss_pred cChh-----------hcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECChHHhCCCCCC
Confidence 7643 2579999999996542 2234567899999999999999995 54 899999998776432
Q ss_pred ccccccCC--CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 255 VLYEKPYP--PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 ~i~E~~~~--~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+..|+.+. .|..+ .+.|+.||..+|+++..+.+ .+++++++||++|||+..
T Consensus 244 p~~E~~~~~~~P~~~--------------------------~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~ 297 (442)
T PLN02206 244 PQVETYWGNVNPIGV--------------------------RSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRM 297 (442)
T ss_pred CCCccccccCCCCCc--------------------------cchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCC
Confidence 34454321 12111 26899999999999998766 689999999999999864
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
....+ .....++..+..+....+++++++.+|++||+|+|++++.++... ..++||++++ +++|+.|
T Consensus 298 ~~~~~-----~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~------~~g~yNIgs~--~~~sl~E 364 (442)
T PLN02206 298 CIDDG-----RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE------HVGPFNLGNP--GEFTMLE 364 (442)
T ss_pred Ccccc-----chHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcC------CCceEEEcCC--CceeHHH
Confidence 32111 112345566666665567788999999999999999999888642 3459999998 8899999
Q ss_pred HHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhh
Q psy6053 412 IIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYY 489 (614)
Q Consensus 412 ~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f 489 (614)
+++.+.+.+|.+..+. +.|..... .. ....-.+.+.+.+||+|+. .+.+.+.+ +++||
T Consensus 365 lae~i~~~~g~~~~i~---~~p~~~~~--~~-----------~~~~d~sKa~~~LGw~P~~-~l~egl~~---~~~~~ 422 (442)
T PLN02206 365 LAKVVQETIDPNAKIE---FRPNTEDD--PH-----------KRKPDITKAKELLGWEPKV-SLRQGLPL---MVKDF 422 (442)
T ss_pred HHHHHHHHhCCCCcee---eCCCCCCC--cc-----------ccccCHHHHHHHcCCCCCC-CHHHHHHH---HHHHH
Confidence 9999999877543322 22211100 00 0112235567889999987 67788877 44555
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-31 Score=298.76 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=197.7
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
...+.++|+|||||||||+|++|+++|++. |++ |++++|..... .++ . ..+++++
T Consensus 309 ~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~---V~~l~r~~~~~---~~~---------------~---~~~~~~~ 364 (660)
T PRK08125 309 ACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYE---VYGLDIGSDAI---SRF---------------L---GHPRFHF 364 (660)
T ss_pred hhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcE---EEEEeCCchhh---hhh---------------c---CCCceEE
Confidence 446677899999999999999999999985 566 89999865321 000 0 2246889
Q ss_pred EeCCCCCCCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceecc
Q psy6053 175 ISGDAEADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHL 251 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~ 251 (614)
+.||++++. +.++.+++++|+|||+||.... .......+++|+.||.+++++|++. + ++|||+||.++++
T Consensus 365 ~~gDl~d~~-----~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~-~~~V~~SS~~vyg 437 (660)
T PRK08125 365 VEGDISIHS-----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N-KRIIFPSTSEVYG 437 (660)
T ss_pred EeccccCcH-----HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C-CeEEEEcchhhcC
Confidence 999999854 1356677899999999997653 2333467899999999999999995 5 8999999998877
Q ss_pred CC--cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeec
Q psy6053 252 QE--KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIP 328 (614)
Q Consensus 252 ~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g 328 (614)
.. .+++|+....+..|. ....+.|+.||..+|+++..+.+ .|++++++||++|||
T Consensus 438 ~~~~~~~~E~~~~~~~~p~----------------------~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyG 495 (660)
T PRK08125 438 MCTDKYFDEDTSNLIVGPI----------------------NKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMG 495 (660)
T ss_pred CCCCCCcCccccccccCCC----------------------CCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeC
Confidence 43 245565321111000 01125799999999999999876 699999999999999
Q ss_pred ccCCCCccccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc-c
Q psy6053 329 VWREPLPGWTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW-Q 406 (614)
Q Consensus 329 ~~~~p~~gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~-~ 406 (614)
+.+...........+ ...++..+..|....+.+++++.+|+++|+|+|++++.++.+... ...+++||++++ + +
T Consensus 496 p~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~--~~~g~iyni~~~--~~~ 571 (660)
T PRK08125 496 PRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDN--RCDGQIINIGNP--DNE 571 (660)
T ss_pred CCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhcccc--ccCCeEEEcCCC--CCc
Confidence 976431110000011 223555566666556678899999999999999999999875421 014679999987 4 6
Q ss_pred ccHHHHHHHHhhhcccc
Q psy6053 407 VSWQEIIDIGKSIVTTE 423 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~ 423 (614)
+|++|+++.+.+.+|.+
T Consensus 572 ~s~~el~~~i~~~~g~~ 588 (660)
T PRK08125 572 ASIRELAEMLLASFEKH 588 (660)
T ss_pred eeHHHHHHHHHHHhccC
Confidence 99999999999988853
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=278.09 Aligned_cols=298 Identities=19% Similarity=0.151 Sum_probs=211.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++|++.|++.|++ |.++.|....... . ....++++.+|++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~---V~~v~r~~~~~~~---------------------~-~~~~~~~~~~Dl~ 74 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHY---IIASDWKKNEHMS---------------------E-DMFCHEFHLVDLR 74 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCE---EEEEEeccccccc---------------------c-ccccceEEECCCC
Confidence 5789999999999999999999999887 8899886432100 0 1113567899999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC---hh-HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcc-
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR---FD-EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKV- 255 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~---~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~- 255 (614)
+.. .+..+++++|+|||+||.+. +. .........|+.||.+++++|++. ++++|||+||..+++....
T Consensus 75 d~~------~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk~~V~~SS~~vYg~~~~~ 147 (370)
T PLN02695 75 VME------NCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVKRFFYASSACIYPEFKQL 147 (370)
T ss_pred CHH------HHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCCEEEEeCchhhcCCcccc
Confidence 865 67777889999999998753 11 123445678999999999999984 8999999999987765432
Q ss_pred -----cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecc
Q psy6053 256 -----LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 256 -----i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~ 329 (614)
+.|+.. .|.. ..+.|+.+|..+|+++..+.. .|++++++||++|||+
T Consensus 148 ~~~~~~~E~~~-~p~~--------------------------p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp 200 (370)
T PLN02695 148 ETNVSLKESDA-WPAE--------------------------PQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGP 200 (370)
T ss_pred CcCCCcCcccC-CCCC--------------------------CCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCC
Confidence 222210 0111 126899999999999998776 6999999999999998
Q ss_pred cCCCCccccCC-CCchHHHHHHHhcC-ceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccc
Q psy6053 330 WREPLPGWTDN-INGPTGLLIGAGKG-VIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQV 407 (614)
Q Consensus 330 ~~~p~~gw~d~-~~g~~~~~~~~~~g-~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~i 407 (614)
... |..+ ...+..++..+.++ ....+++++++.++++||+|+++++..++... .+++||++++ +++
T Consensus 201 ~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~~------~~~~~nv~~~--~~~ 268 (370)
T PLN02695 201 FGT----WKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKSD------FREPVNIGSD--EMV 268 (370)
T ss_pred CCC----ccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhcc------CCCceEecCC--Cce
Confidence 642 2111 11244555555543 34456789999999999999999999876542 3578999998 889
Q ss_pred cHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhh
Q psy6053 408 SWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFE 487 (614)
Q Consensus 408 t~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~ 487 (614)
|++|+++.+.+..|.+.|... .|.... .. . . ..-.+.+...+||+|.. .+.+.+.+ .++
T Consensus 269 s~~el~~~i~~~~g~~~~i~~---~~~~~~---~~-~---------~-~~d~sk~~~~lgw~p~~-~l~e~i~~---~~~ 327 (370)
T PLN02695 269 SMNEMAEIALSFENKKLPIKH---IPGPEG---VR-G---------R-NSDNTLIKEKLGWAPTM-RLKDGLRI---TYF 327 (370)
T ss_pred eHHHHHHHHHHHhCCCCCcee---cCCCCC---cc-c---------c-ccCHHHHHHhcCCCCCC-CHHHHHHH---HHH
Confidence 999999999988787554431 221100 00 0 0 01233446678999986 67777776 445
Q ss_pred hhh
Q psy6053 488 YYA 490 (614)
Q Consensus 488 ~f~ 490 (614)
||.
T Consensus 328 ~~~ 330 (370)
T PLN02695 328 WIK 330 (370)
T ss_pred HHH
Confidence 553
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=275.49 Aligned_cols=261 Identities=16% Similarity=0.126 Sum_probs=190.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.|++ |++++|...... .+++.++... . .+. ...+++++.||++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~---V~~~~r~~~~~~-~~~~~~~~~~-----~---~~~-~~~~~~~~~~Dl~d~ 67 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYE---VHGLIRRSSSFN-TQRIEHIYED-----P---HNV-NKARMKLHYGDLTDS 67 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCE---EEEEecCCcccc-hhhhhhhhhc-----c---ccc-cccceeEEEeccCCH
Confidence 58999999999999999999999876 888998754211 2333322110 0 000 124689999999986
Q ss_pred CCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCC---ceEEEEeCceeccCCc
Q psy6053 183 ELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHL---ELFVHISTAYCHLQEK 254 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~---k~~V~vST~~~~~~~~ 254 (614)
+ .+..++++ +|+|||+||..... .......++|+.||.+++++|++. ++ ++|||+||..+++...
T Consensus 68 ~------~l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~-~~~~~~~~v~~SS~~vyg~~~ 140 (343)
T TIGR01472 68 S------NLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTL-GLIKSVKFYQASTSELYGKVQ 140 (343)
T ss_pred H------HHHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHh-CCCcCeeEEEeccHHhhCCCC
Confidence 6 78888774 69999999976432 223456688999999999999985 54 4899999997776432
Q ss_pred --ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 255 --VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 --~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+++|+....| .+.|+.||..+|.+++.+.. .|+++++.|+.+++|+..
T Consensus 141 ~~~~~E~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~ 191 (343)
T TIGR01472 141 EIPQNETTPFYP-----------------------------RSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRR 191 (343)
T ss_pred CCCCCCCCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCC
Confidence 4555432222 27899999999999998876 689999999999998853
Q ss_pred CCCccccCCCCchHHHHHHHhcCc-eeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGV-IRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~-~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
.. .... .....++..+..|. .....+++++.+||+||||+|++++.++.+. ..++||++++ +++|+.
T Consensus 192 ~~--~~~~--~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~~~~~~------~~~~yni~~g--~~~s~~ 259 (343)
T TIGR01472 192 GE--NFVT--RKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWLMLQQD------KPDDYVIATG--ETHSVR 259 (343)
T ss_pred Cc--cccc--hHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHHHHhcC------CCccEEecCC--CceeHH
Confidence 21 0000 11123344455564 3345688999999999999999999888653 2358999999 899999
Q ss_pred HHHHHHhhhccccc
Q psy6053 411 EIIDIGKSIVTTEV 424 (614)
Q Consensus 411 e~~~~~~~~~g~~~ 424 (614)
|+++.+.+.+|.+.
T Consensus 260 e~~~~i~~~~g~~~ 273 (343)
T TIGR01472 260 EFVEVSFEYIGKTL 273 (343)
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999888653
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=264.00 Aligned_cols=261 Identities=21% Similarity=0.261 Sum_probs=205.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+++|+|||||||||++|++.||++||. |.+.+|+..+....+-+.++ +. ..+++..+.+|++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~---V~gtVR~~~~~k~~~~L~~l-------------~~-a~~~l~l~~aDL~ 67 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT---VRGTVRDPEDEKKTEHLRKL-------------EG-AKERLKLFKADLL 67 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE---EEEEEcCcchhhhHHHHHhc-------------cc-CcccceEEecccc
Confidence 5789999999999999999999999998 99999998664332223322 22 4567999999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHH--HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC-----
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEA--LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE----- 253 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~--~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~----- 253 (614)
+++ .++..+++||.|||+|+.+.++.. .+++++.+|.||.|+|++|++.+.+||+|++||..+...+
T Consensus 68 d~~------sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~ 141 (327)
T KOG1502|consen 68 DEG------SFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIG 141 (327)
T ss_pred ccc------hHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCC
Confidence 998 899999999999999999988543 5579999999999999999998679999999998543322
Q ss_pred --cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 254 --KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 254 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
..++|+.+. |++.... +. +.|..||.+||+..+++++ +|++.+.+-|+.|.||.
T Consensus 142 ~~~vvdE~~ws---------------d~~~~~~-~~-------~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~ 198 (327)
T KOG1502|consen 142 ENSVVDEESWS---------------DLDFCRC-KK-------LWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPG 198 (327)
T ss_pred CCcccccccCC---------------cHHHHHh-hH-------HHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCC
Confidence 245565332 2222211 11 6899999999999999998 78999999999999997
Q ss_pred CCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
-.| ..+.....+...++|.... ..+....+|+|+|||+|++.+.+++. ..+.|.|.+. . .+++
T Consensus 199 l~~------~l~~s~~~~l~~i~G~~~~---~~n~~~~~VdVrDVA~AHv~a~E~~~-----a~GRyic~~~--~-~~~~ 261 (327)
T KOG1502|consen 199 LQP------SLNSSLNALLKLIKGLAET---YPNFWLAFVDVRDVALAHVLALEKPS-----AKGRYICVGE--V-VSIK 261 (327)
T ss_pred ccc------ccchhHHHHHHHHhccccc---CCCCceeeEeHHHHHHHHHHHHcCcc-----cCceEEEecC--c-ccHH
Confidence 655 3344456777788886543 23444559999999999999999876 5689999887 4 5699
Q ss_pred HHHHHHhhhcccccC
Q psy6053 411 EIIDIGKSIVTTEVP 425 (614)
Q Consensus 411 e~~~~~~~~~g~~~p 425 (614)
|+.+.+.+. ...++
T Consensus 262 ei~~~l~~~-~P~~~ 275 (327)
T KOG1502|consen 262 EIADILREL-FPDYP 275 (327)
T ss_pred HHHHHHHHh-CCCCC
Confidence 999999988 44434
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=272.09 Aligned_cols=307 Identities=16% Similarity=0.199 Sum_probs=207.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++|+++|+++|++ |++++|+..... ....+.. .+. ..++++++.||++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~---V~~~~r~~~~~~---~~~~~~~----------~~~-~~~~~~~~~~Dl~ 65 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYT---VKATVRDPNDPK---KTEHLLA----------LDG-AKERLHLFKANLL 65 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCE---EEEEEcCCCchh---hHHHHHh----------ccC-CCCceEEEecccc
Confidence 4689999999999999999999999886 888898754311 1111100 001 2247899999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh--hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee--ccCC---
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF--DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC--HLQE--- 253 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~--~~~~--- 253 (614)
++. .+..+++++|+|||+||.... ..+....+++|+.||.+++++|.+..++++|||+||.++ ++..
T Consensus 66 ~~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~ 139 (322)
T PLN02662 66 EEG------SFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLT 139 (322)
T ss_pred Ccc------hHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCC
Confidence 987 788999999999999997643 233346789999999999999998547899999999753 4321
Q ss_pred --cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 254 --KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 254 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
.+++|+....|. .....++.|+.||.++|++++.+.+ .+++++++||+.|||+.
T Consensus 140 ~~~~~~E~~~~~p~-----------------------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~ 196 (322)
T PLN02662 140 PDVVVDETWFSDPA-----------------------FCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPL 196 (322)
T ss_pred CCCcCCcccCCChh-----------------------HhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCC
Confidence 134443221110 0111236899999999999998776 69999999999999997
Q ss_pred CCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
..+.. ......+..+..|.. ..+++.+|++||+|+|++++.++..+. ..+.||++ + ++++++
T Consensus 197 ~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~~~~~~~~-g--~~~s~~ 258 (322)
T PLN02662 197 LQPTL------NTSAEAILNLINGAQ----TFPNASYRWVDVRDVANAHIQAFEIPS-----ASGRYCLV-E--RVVHYS 258 (322)
T ss_pred CCCCC------CchHHHHHHHhcCCc----cCCCCCcCeEEHHHHHHHHHHHhcCcC-----cCCcEEEe-C--CCCCHH
Confidence 54321 112234444444432 123567899999999999999887643 23578886 4 579999
Q ss_pred HHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHH-HHHhCCChHHHHHHHHHHHHHhhhhhh
Q psy6053 411 EIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAI-IFLSGNKPCLVKIQDRINKGFEVFEYY 489 (614)
Q Consensus 411 e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~-~~~~G~~P~~~~l~~ki~~~~~~~~~f 489 (614)
|+++.+.+.++. .+.. .+.+... .. .+....|.. .+.+||+| . .+.+.+.+ .++||
T Consensus 259 e~~~~i~~~~~~-~~~~--~~~~~~~----~~-----------~~~~~~d~~k~~~lg~~~-~-~~~~~l~~---~~~~~ 315 (322)
T PLN02662 259 EVVKILHELYPT-LQLP--EKCADDK----PY-----------VPTYQVSKEKAKSLGIEF-I-PLEVSLKD---TVESL 315 (322)
T ss_pred HHHHHHHHHCCC-CCCC--CCCCCcc----cc-----------ccccccChHHHHHhCCcc-c-cHHHHHHH---HHHHH
Confidence 999999998553 2211 1111100 00 111112222 23489986 3 68888886 56666
Q ss_pred hcceE
Q psy6053 490 ANNQW 494 (614)
Q Consensus 490 ~~~~w 494 (614)
..+.|
T Consensus 316 ~~~~~ 320 (322)
T PLN02662 316 KEKGF 320 (322)
T ss_pred HHcCC
Confidence 65544
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=271.54 Aligned_cols=323 Identities=18% Similarity=0.176 Sum_probs=223.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc-CHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK-NARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~-~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+|+|||||||+|++|+++|+++|++ |+++.|..... ...+++.+... . ...++.++.+|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~---V~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~D 66 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYK---VVVIDNLDNSSEEALRRVKELAG------------D-LGDNLVFHKVD 66 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCCcchHHHHHHHHHhhc------------c-cCccceEEecC
Confidence 45789999999999999999999999866 88888764321 11122222110 0 12468899999
Q ss_pred CCCCCCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC
Q psy6053 179 AEADELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE 253 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~ 253 (614)
++++. ++..+++ ++|+|||+||..... ......+++|+.++.+++++|++. ++++||++||+.+++..
T Consensus 67 ~~~~~------~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~vyg~~ 139 (352)
T PLN02240 67 LRDKE------ALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCKKLVFSSSATVYGQP 139 (352)
T ss_pred cCCHH------HHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhCCC
Confidence 99865 7777765 689999999975432 234567899999999999999984 78999999998766532
Q ss_pred --cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecceeecc
Q psy6053 254 --KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 254 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~I~g~ 329 (614)
.+++|+....| .+.|+.||+.+|++++.+.. .+++++++|++++||+
T Consensus 140 ~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~ 190 (352)
T PLN02240 140 EEVPCTEEFPLSA-----------------------------TNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGA 190 (352)
T ss_pred CCCCCCCCCCCCC-----------------------------CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCC
Confidence 25566532222 27899999999999988754 4789999999999998
Q ss_pred cCCCCccccCC-C-CchHHHHHHHhcCcee--eEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 330 WREPLPGWTDN-I-NGPTGLLIGAGKGVIR--TMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 330 ~~~p~~gw~d~-~-~g~~~~~~~~~~g~~~--~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
+....-|...+ . .+...++..+..|... .+.+ ++.+.+++++|+|+|++++.++..........+++||+
T Consensus 191 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni 270 (352)
T PLN02240 191 HPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNL 270 (352)
T ss_pred CccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEc
Confidence 64322222111 0 1112234444444322 2333 67899999999999999998886542111124579999
Q ss_pred ccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHH--HHHHHHHhCCChHHHHHHH
Q psy6053 400 TSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYF--LDAIIFLSGNKPCLVKIQD 477 (614)
Q Consensus 400 ~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~--~d~~~~~~G~~P~~~~l~~ 477 (614)
+++ +++|++|+++.+.+.+|.+.|.......|.. ..... .+.+.+.+||+|+. .+.+
T Consensus 271 ~~~--~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~------------------~~~~~~d~~k~~~~lg~~p~~-~l~~ 329 (352)
T PLN02240 271 GTG--KGTSVLEMVAAFEKASGKKIPLKLAPRRPGD------------------AEEVYASTEKAEKELGWKAKY-GIDE 329 (352)
T ss_pred cCC--CcEeHHHHHHHHHHHhCCCCCceeCCCCCCC------------------hhhhhcCHHHHHHHhCCCCCC-CHHH
Confidence 999 8999999999999998876554321111111 01111 34556788999986 6777
Q ss_pred HHHHHHhhhhhhhcceEEEec
Q psy6053 478 RINKGFEVFEYYANNQWEFRN 498 (614)
Q Consensus 478 ki~~~~~~~~~f~~~~w~f~~ 498 (614)
.+.+ .++|+..+.|.|..
T Consensus 330 ~l~~---~~~~~~~~~~~~~~ 347 (352)
T PLN02240 330 MCRD---QWNWASKNPYGYGS 347 (352)
T ss_pred HHHH---HHHHHHhCccccCC
Confidence 7776 67788888777754
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=266.83 Aligned_cols=306 Identities=20% Similarity=0.224 Sum_probs=216.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|||||||||+|++++++|++.|++ .+|+++.|...... .++++++. ...+++++.+|+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-~~v~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~Dl~~~~ 63 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-AEVIVLDKLTYAGN-LENLADLE---------------DNPRYRFVKGDIGDRE 63 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-CEEEEecCCCcchh-hhhhhhhc---------------cCCCcEEEEcCCcCHH
Confidence 5899999999999999999998754 25888877432211 12222210 1236888999999876
Q ss_pred CCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc---c
Q psy6053 184 LAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK---V 255 (614)
Q Consensus 184 lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~---~ 255 (614)
++.+++++ +|+|||+||.+... +..+..+++|+.|+.+++++|++...-.++||+||..+++... +
T Consensus 64 ------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~ 137 (317)
T TIGR01181 64 ------LVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDA 137 (317)
T ss_pred ------HHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCC
Confidence 78888886 99999999976543 3345678999999999999999842223899999987766432 3
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~ 334 (614)
+.|.....| -+.|+.+|+.+|.++..+.. .+++++++||+.|||+...+.
T Consensus 138 ~~e~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~ 188 (317)
T TIGR01181 138 FTETTPLAP-----------------------------SSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPE 188 (317)
T ss_pred cCCCCCCCC-----------------------------CCchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc
Confidence 444322111 16899999999999988765 699999999999999864320
Q ss_pred ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 335 PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
. -...++..+..|....+++++++.++++|+||+|+++..++.+.. .+++||++++ .++++.|+++
T Consensus 189 -----~--~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~~-----~~~~~~~~~~--~~~s~~~~~~ 254 (317)
T TIGR01181 189 -----K--LIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKGR-----VGETYNIGGG--NERTNLEVVE 254 (317)
T ss_pred -----c--HHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCCC-----CCceEEeCCC--CceeHHHHHH
Confidence 1 122355556666555566888899999999999999998886532 5689999998 8899999999
Q ss_pred HHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcce
Q psy6053 415 IGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIP-AYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQ 493 (614)
Q Consensus 415 ~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p-a~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~~ 493 (614)
.+.+.+|.+.+.. .+.+... .. . .+ ..-.+.+.+.+||+|+. .+.+.+.+ .++||..+.
T Consensus 255 ~i~~~~~~~~~~~--~~~~~~~---~~---~--------~~~~~~~~k~~~~lG~~p~~-~~~~~i~~---~~~~~~~~~ 314 (317)
T TIGR01181 255 TILELLGKDEDLI--THVEDRP---GH---D--------RRYAIDASKIKRELGWAPKY-TFEEGLRK---TVQWYLDNE 314 (317)
T ss_pred HHHHHhCCCcccc--cccCCCc---cc---h--------hhhcCCHHHHHHHhCCCCCC-cHHHHHHH---HHHHHHhcc
Confidence 9999977643221 1111100 00 0 00 11235556789999977 47777776 667887776
Q ss_pred EE
Q psy6053 494 WE 495 (614)
Q Consensus 494 w~ 495 (614)
|.
T Consensus 315 ~~ 316 (317)
T TIGR01181 315 WW 316 (317)
T ss_pred CC
Confidence 64
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=272.33 Aligned_cols=254 Identities=19% Similarity=0.229 Sum_probs=184.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||+|++|+++|+++|++ |.+++|+...... ..+.++ +. ...+++++.+|++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~---V~~~~r~~~~~~~-~~~~~~-------------~~-~~~~~~~~~~Dl~ 70 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYT---VKGTVRNPDDPKN-THLREL-------------EG-GKERLILCKADLQ 70 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCE---EEEEeCCchhhhH-HHHHHh-------------hC-CCCcEEEEecCcC
Confidence 5789999999999999999999999876 8889997532110 111111 00 2246889999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc-eeccCCc-----
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA-YCHLQEK----- 254 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~-~~~~~~~----- 254 (614)
++. ++..+++++|+|||+||... ......+++|+.||.+++++|++. ++++|||+||. .+++...
T Consensus 71 d~~------~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~nv~gt~~ll~aa~~~-~v~r~V~~SS~~avyg~~~~~~~~ 141 (342)
T PLN02214 71 DYE------ALKAAIDGCDGVFHTASPVT--DDPEQMVEPAVNGAKFVINAAAEA-KVKRVVITSSIGAVYMDPNRDPEA 141 (342)
T ss_pred ChH------HHHHHHhcCCEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeccceeeeccCCCCCCc
Confidence 876 78888999999999999764 334677899999999999999994 88999999996 4554211
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
.++|+..++ .+ ......+.|+.||..+|+++..+.+ .|++++++||++|||+...+
T Consensus 142 ~~~E~~~~~-~~----------------------~~~~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~ 198 (342)
T PLN02214 142 VVDESCWSD-LD----------------------FCKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQP 198 (342)
T ss_pred ccCcccCCC-hh----------------------hccccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 245542210 00 0001136899999999999999876 69999999999999997543
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
. .......+.....|.... .++..+++|||+|+|++++.++.+.. .++.||++++ +++++|++
T Consensus 199 ~------~~~~~~~~~~~~~g~~~~---~~~~~~~~i~V~Dva~a~~~al~~~~-----~~g~yn~~~~---~~~~~el~ 261 (342)
T PLN02214 199 T------INASLYHVLKYLTGSAKT---YANLTQAYVDVRDVALAHVLVYEAPS-----ASGRYLLAES---ARHRGEVV 261 (342)
T ss_pred C------CCchHHHHHHHHcCCccc---CCCCCcCeeEHHHHHHHHHHHHhCcc-----cCCcEEEecC---CCCHHHHH
Confidence 1 111112223344454332 23567899999999999999987643 3468999764 57999999
Q ss_pred HHHhhhcc
Q psy6053 414 DIGKSIVT 421 (614)
Q Consensus 414 ~~~~~~~g 421 (614)
+.+.+.++
T Consensus 262 ~~i~~~~~ 269 (342)
T PLN02214 262 EILAKLFP 269 (342)
T ss_pred HHHHHHCC
Confidence 99999864
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=269.28 Aligned_cols=257 Identities=21% Similarity=0.257 Sum_probs=187.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.||+|||||||||||++++++|++.|++ |++++|+.... +++.++... .. ...+++++.+|++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~---~~~~~~~~~----------~~-~~~~~~~~~~Dl~ 66 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYT---VKATVRDLTDR---KKTEHLLAL----------DG-AKERLKLFKADLL 66 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEECCCcch---HHHHHHHhc----------cC-CCCceEEEecCCC
Confidence 4789999999999999999999999876 88889976432 222222110 00 2246899999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceec--cCC---
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCH--LQE--- 253 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~--~~~--- 253 (614)
+++ .+..+++++|+|||+||.+... .+....+++|+.||.+++++|++.+++++|||+||..++ +..
T Consensus 67 ~~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~ 140 (322)
T PLN02986 67 EES------SFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIE 140 (322)
T ss_pred Ccc------hHHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCC
Confidence 977 7889999999999999976432 334457899999999999999985478999999998543 221
Q ss_pred --cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 254 --KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 254 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
..++|+....|. ......+.|+.||..+|++++++.+ .|++++++||++|||+.
T Consensus 141 ~~~~~~E~~~~~p~-----------------------~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~ 197 (322)
T PLN02986 141 ANDVVDETFFSDPS-----------------------LCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPL 197 (322)
T ss_pred CCCCcCcccCCChH-----------------------HhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCC
Confidence 123443221110 0011236899999999999999876 69999999999999997
Q ss_pred CCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
..|.. + ....++..+..|... . +...+++|+|+|+|++++.++..+. .+++||++ + .+++++
T Consensus 198 ~~~~~----~--~~~~~~~~~~~g~~~--~--~~~~~~~v~v~Dva~a~~~al~~~~-----~~~~yni~-~--~~~s~~ 259 (322)
T PLN02986 198 LQPTL----N--FSVELIVDFINGKNL--F--NNRFYRFVDVRDVALAHIKALETPS-----ANGRYIID-G--PIMSVN 259 (322)
T ss_pred CCCCC----C--ccHHHHHHHHcCCCC--C--CCcCcceeEHHHHHHHHHHHhcCcc-----cCCcEEEe-c--CCCCHH
Confidence 65421 1 112344455555421 2 3456899999999999999987653 34589994 4 479999
Q ss_pred HHHHHHhhhcc
Q psy6053 411 EIIDIGKSIVT 421 (614)
Q Consensus 411 e~~~~~~~~~g 421 (614)
|+++.+.+.++
T Consensus 260 e~~~~i~~~~~ 270 (322)
T PLN02986 260 DIIDILRELFP 270 (322)
T ss_pred HHHHHHHHHCC
Confidence 99999999854
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=270.46 Aligned_cols=302 Identities=16% Similarity=0.184 Sum_probs=209.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.|.+ .|+++.|..... ..+++.++ . ...+++++.+|+++.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~--~v~~~~~~~~~~-~~~~~~~~------------~---~~~~~~~~~~Dl~d~ 62 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD--SVVNVDKLTYAG-NLESLADV------------S---DSERYVFEHADICDR 62 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC--eEEEecCCCccc-hHHHHHhc------------c---cCCceEEEEecCCCH
Confidence 57999999999999999999999865 255555432111 11111111 0 124578899999987
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHc--------CCCceEEEEeCcee
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEM--------KHLELFVHISTAYC 249 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~--------~~~k~~V~vST~~~ 249 (614)
+ ++..+++ ++|+|||+||.++.. ...+...++|+.||.+++++|++. +++++|||+||.++
T Consensus 63 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~v 136 (352)
T PRK10084 63 A------ELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEV 136 (352)
T ss_pred H------HHHHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhh
Confidence 5 7777776 489999999986532 234678999999999999999873 24679999999877
Q ss_pred ccCCc------------ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCC
Q psy6053 250 HLQEK------------VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGM 316 (614)
Q Consensus 250 ~~~~~------------~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~gl 316 (614)
++... .++|+... ...+.|+.||..+|+++..+.+ .|+
T Consensus 137 yg~~~~~~~~~~~~~~~~~~E~~~~-----------------------------~p~~~Y~~sK~~~E~~~~~~~~~~g~ 187 (352)
T PRK10084 137 YGDLPHPDEVENSEELPLFTETTAY-----------------------------APSSPYSASKASSDHLVRAWLRTYGL 187 (352)
T ss_pred cCCCCccccccccccCCCccccCCC-----------------------------CCCChhHHHHHHHHHHHHHHHHHhCC
Confidence 76421 11222110 1127899999999999998866 699
Q ss_pred CEEEeecceeecccCCCCccccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++++||+.|||+...+ .+ ...++..+..|....+++++++.+|++||+|+|++++.++.... .++
T Consensus 188 ~~vilr~~~v~Gp~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~~~-----~~~ 254 (352)
T PRK10084 188 PTIVTNCSNNYGPYHFP--------EKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTEGK-----AGE 254 (352)
T ss_pred CEEEEeccceeCCCcCc--------cchHHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhcCC-----CCc
Confidence 99999999999996422 11 22344555556544567889999999999999999988876432 568
Q ss_pred EEEeccCCcccccHHHHHHHHhhhcccccCCCCc-----cccCCcccccchhHHHHHHHHHhhhHHHH--HHHHHHHhCC
Q psy6053 396 IVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGC-----VWYPGGSMKSNRLLHQICVIFFHMIPAYF--LDAIIFLSGN 468 (614)
Q Consensus 396 vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~pa~~--~d~~~~~~G~ 468 (614)
+||++++ +++++.|+++.+.+.+|...|.... .+.+... . ..+.+. .+.+.+.+||
T Consensus 255 ~yni~~~--~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~---~------------~~~~~~~d~~k~~~~lg~ 317 (352)
T PRK10084 255 TYNIGGH--NEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRP---G------------HDRRYAIDASKISRELGW 317 (352)
T ss_pred eEEeCCC--CcCcHHHHHHHHHHHhccccccccchhhhccccccCC---C------------CCceeeeCHHHHHHHcCC
Confidence 9999998 8899999999999988864332110 0011000 0 011122 3445677899
Q ss_pred ChHHHHHHHHHHHHHhhhhhhhc
Q psy6053 469 KPCLVKIQDRINKGFEVFEYYAN 491 (614)
Q Consensus 469 ~P~~~~l~~ki~~~~~~~~~f~~ 491 (614)
+|.. .+.+.+.+ +++||..
T Consensus 318 ~p~~-~l~~~l~~---~~~~~~~ 336 (352)
T PRK10084 318 KPQE-TFESGIRK---TVEWYLA 336 (352)
T ss_pred CCcC-CHHHHHHH---HHHHHHh
Confidence 9976 67777776 5566653
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=251.93 Aligned_cols=308 Identities=19% Similarity=0.206 Sum_probs=224.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+..++|+||||.||+|++.+..+.+.-|+. +..++..-.=..+ ..-+++.. ...+..++.+|+
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~-~~v~idkL~~~s~-~~~l~~~~---------------n~p~ykfv~~di 66 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDY-KFVNLDKLDYCSN-LKNLEPVR---------------NSPNYKFVEGDI 66 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCC-cEEEEeecccccc-cchhhhhc---------------cCCCceEeeccc
Confidence 445899999999999999999999986663 4555544321111 22222221 446789999999
Q ss_pred CCCCCCCCHHHHHHHh--ccccEEEEcccccChhHHHH---HHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc
Q psy6053 180 EADELAIKESDRQLLA--SEVDIMIHGAATIRFDEALK---KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~--~~vd~ViH~AA~v~~~~~~~---~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~ 254 (614)
.+.. ....++ +++|.|+|.||..+.+..+. .+...|+.+|..|++.++..+++++|||+||..|+|+..
T Consensus 67 ~~~~------~~~~~~~~~~id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~ 140 (331)
T KOG0747|consen 67 ADAD------LVLYLFETEEIDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSD 140 (331)
T ss_pred cchH------HHHhhhccCchhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcc
Confidence 9865 344443 47999999999887665442 467889999999999999988999999999998877654
Q ss_pred --ccc-cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 255 --VLY-EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 255 --~i~-E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
... |...+.|. |+|+.||++||++++.+.. .|+|++++|.++||||.
T Consensus 141 ~~~~~~E~s~~nPt-----------------------------npyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~ 191 (331)
T KOG0747|consen 141 EDAVVGEASLLNPT-----------------------------NPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPN 191 (331)
T ss_pred ccccccccccCCCC-----------------------------CchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCC
Confidence 233 55554443 8999999999999999998 89999999999999998
Q ss_pred CCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
+-|.. -.-.++.....|..-++.|++.+.+++++|+|+++++-+++.+ +. .++|||+++. .+.+..
T Consensus 192 q~~~k-------lipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~K-g~----~geIYNIgtd--~e~~~~ 257 (331)
T KOG0747|consen 192 QYPEK-------LIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK-GE----LGEIYNIGTD--DEMRVI 257 (331)
T ss_pred cChHH-------HhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhc-CC----ccceeeccCc--chhhHH
Confidence 75421 1113444455566667889999999999999999999988877 32 6899999998 889999
Q ss_pred HHHHHHhhhcccccCCCC----ccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhh
Q psy6053 411 EIIDIGKSIVTTEVPLNG----CVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVF 486 (614)
Q Consensus 411 e~~~~~~~~~g~~~p~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~ 486 (614)
|+++.+.+......|-.. ...+|..+....+ +. +-+--.+-+||+|..+ ..+++++ ++
T Consensus 258 ~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~R--y~------------~~~eKik~LGw~~~~p-~~eGLrk---ti 319 (331)
T KOG0747|consen 258 DLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLR--YF------------LDDEKIKKLGWRPTTP-WEEGLRK---TI 319 (331)
T ss_pred HHHHHHHHHHHHhccCCCCCCcceecCCCCccccc--cc------------ccHHHHHhcCCcccCc-HHHHHHH---HH
Confidence 999999888666444211 1223322221111 11 1122245899999985 8889888 66
Q ss_pred hhhhc
Q psy6053 487 EYYAN 491 (614)
Q Consensus 487 ~~f~~ 491 (614)
+||..
T Consensus 320 e~y~~ 324 (331)
T KOG0747|consen 320 EWYTK 324 (331)
T ss_pred HHHHh
Confidence 66653
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=266.98 Aligned_cols=307 Identities=13% Similarity=0.110 Sum_probs=210.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
|.+||+|||||||||||+++++.|++.|++ |+++.|........ ...+ . ...++.++.+|
T Consensus 1 ~~~~k~ilItGatG~IG~~l~~~L~~~G~~---V~~~~r~~~~~~~~--~~~~---------~------~~~~~~~~~~D 60 (349)
T TIGR02622 1 FWQGKKVLVTGHTGFKGSWLSLWLLELGAE---VYGYSLDPPTSPNL--FELL---------N------LAKKIEDHFGD 60 (349)
T ss_pred CcCCCEEEEECCCChhHHHHHHHHHHCCCE---EEEEeCCCccchhH--HHHH---------h------hcCCceEEEcc
Confidence 467899999999999999999999999876 88888876432111 1100 0 11357789999
Q ss_pred CCCCCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC
Q psy6053 179 AEADELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE 253 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~ 253 (614)
+++++ ++..++++ +|+|||+||..... ......+++|+.|+.+++++|++.+.++++|++||..+++..
T Consensus 61 l~~~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~ 134 (349)
T TIGR02622 61 IRDAA------KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRND 134 (349)
T ss_pred CCCHH------HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCC
Confidence 99865 78887774 69999999964322 234567899999999999999985337899999998777643
Q ss_pred c---ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-C-------CCCEEEee
Q psy6053 254 K---VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-N-------GMPCLMLR 322 (614)
Q Consensus 254 ~---~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~-------glp~~IvR 322 (614)
. +++|.....| .+.|+.||..+|.+++.+.. . +++++++|
T Consensus 135 ~~~~~~~e~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR 185 (349)
T TIGR02622 135 EWVWGYRETDPLGG-----------------------------HDPYSSSKACAELVIASYRSSFFGVANFHGIKIASAR 185 (349)
T ss_pred CCCCCCccCCCCCC-----------------------------CCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEc
Confidence 1 3444322112 27899999999999988754 1 89999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
|+.|||+++.. .. .-...++..+..|.... .+++++.+||+||||+|++++.++..........+++||++++
T Consensus 186 ~~~vyGp~~~~-----~~-~~~~~~~~~~~~g~~~~-~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~ 258 (349)
T TIGR02622 186 AGNVIGGGDWA-----ED-RLIPDVIRAFSSNKIVI-IRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPR 258 (349)
T ss_pred cCcccCCCcch-----hh-hhhHHHHHHHhcCCCeE-ECCCCcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCC
Confidence 99999985311 00 11123555555665443 4678999999999999999998886532111113579999985
Q ss_pred CcccccHHHHHHHHhhhcccc-cCCCCc--cccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHH
Q psy6053 403 QEWQVSWQEIIDIGKSIVTTE-VPLNGC--VWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRI 479 (614)
Q Consensus 403 ~~~~it~~e~~~~~~~~~g~~-~p~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki 479 (614)
..++++..|+++.+.+.++.. .++... ...+.. .. ....-.+.+.+.+||+|+. .+.+.+
T Consensus 259 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~----------~~~~d~~k~~~~lgw~p~~-~l~~gi 321 (349)
T TIGR02622 259 ASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHE------AR----------LLKLDSSKARTLLGWHPRW-GLEEAV 321 (349)
T ss_pred cccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcc------cc----------eeecCHHHHHHHhCCCCCC-CHHHHH
Confidence 336899999999888765532 122110 001110 00 0111234456778999998 788888
Q ss_pred HHHHh
Q psy6053 480 NKGFE 484 (614)
Q Consensus 480 ~~~~~ 484 (614)
.+..+
T Consensus 322 ~~~i~ 326 (349)
T TIGR02622 322 SRTVD 326 (349)
T ss_pred HHHHH
Confidence 87443
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=266.51 Aligned_cols=257 Identities=17% Similarity=0.215 Sum_probs=186.2
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|||||||||||++|+++|++.|++ |++++|...... ........ .. ...+++++.+|++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~---V~~~~r~~~~~~---~~~~~~~~----------~~-~~~~~~~~~~D~~ 66 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYT---INATVRDPKDRK---KTDHLLAL----------DG-AKERLKLFKADLL 66 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCE---EEEEEcCCcchh---hHHHHHhc----------cC-CCCceEEEeCCCC
Confidence 3689999999999999999999999876 777888754321 11111100 00 2246889999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC----
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE---- 253 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~---- 253 (614)
+++ +++.+++++|+|||+||..... .+....+++|+.|+.+++++|.+..+.++||++||..++...
T Consensus 67 d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~ 140 (325)
T PLN02989 67 DEG------SFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKL 140 (325)
T ss_pred Cch------HHHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccC
Confidence 977 7888889999999999975432 345678899999999999999885457899999998554321
Q ss_pred ---cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecc
Q psy6053 254 ---KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 254 ---~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~ 329 (614)
.+++|+....|.. .....+.|+.||..+|+++..+.+ .|++++++||++|||+
T Consensus 141 ~~~~~~~E~~~~~p~~-----------------------~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp 197 (325)
T PLN02989 141 GPNDVVDETFFTNPSF-----------------------AEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGP 197 (325)
T ss_pred CCCCccCcCCCCchhH-----------------------hcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCC
Confidence 1345553222210 001126899999999999998876 6999999999999999
Q ss_pred cCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccH
Q psy6053 330 WREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSW 409 (614)
Q Consensus 330 ~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~ 409 (614)
...|..+ ....++..+..|... . +...+++++|+|+|++++.++.... .+++||++ + .++|+
T Consensus 198 ~~~~~~~------~~~~~i~~~~~~~~~--~--~~~~r~~i~v~Dva~a~~~~l~~~~-----~~~~~ni~-~--~~~s~ 259 (325)
T PLN02989 198 ILQPTLN------FSVAVIVELMKGKNP--F--NTTHHRFVDVRDVALAHVKALETPS-----ANGRYIID-G--PVVTI 259 (325)
T ss_pred CCCCCCC------chHHHHHHHHcCCCC--C--CCcCcCeeEHHHHHHHHHHHhcCcc-----cCceEEEe-c--CCCCH
Confidence 7654211 122344555555432 1 2345799999999999999987643 34589994 4 47999
Q ss_pred HHHHHHHhhhcc
Q psy6053 410 QEIIDIGKSIVT 421 (614)
Q Consensus 410 ~e~~~~~~~~~g 421 (614)
+|+++.+.+.++
T Consensus 260 ~ei~~~i~~~~~ 271 (325)
T PLN02989 260 KDIENVLREFFP 271 (325)
T ss_pred HHHHHHHHHHCC
Confidence 999999999965
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-30 Score=270.07 Aligned_cols=310 Identities=15% Similarity=0.165 Sum_probs=202.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||||++|+++|++.|++ |++++|..... +++..... .+. ...++.++.+|+++
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~---V~~~~r~~~~~---~~~~~~~~----------~~~-~~~~~~~v~~Dl~d 67 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYT---VRATVRDPANV---KKVKHLLD----------LPG-ATTRLTLWKADLAV 67 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCE---EEEEEcCcchh---HHHHHHHh----------ccC-CCCceEEEEecCCC
Confidence 578999999999999999999999876 88888865332 22222111 011 22368899999999
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC---cc-
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE---KV- 255 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~---~~- 255 (614)
++ .+..+++++|+|||+||..... .+....+++|+.||.+++++|.+...+++|||+||..+++.. .+
T Consensus 68 ~~------~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~ 141 (351)
T PLN02650 68 EG------SFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPV 141 (351)
T ss_pred hh------hHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCc
Confidence 76 7888889999999999976432 233467899999999999999985347899999998554322 11
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~ 334 (614)
++|+... +.+ . +.......+.|+.||..+|++++.+.+ .|++++++||++|||+...+.
T Consensus 142 ~~E~~~~-~~~--------------~-----~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~ 201 (351)
T PLN02650 142 YDEDCWS-DLD--------------F-----CRRKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTS 201 (351)
T ss_pred cCcccCC-chh--------------h-----hhccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCC
Confidence 3443110 000 0 000001125799999999999999877 799999999999999976431
Q ss_pred ccccCCCCchHHHHHH--HhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 335 PGWTDNINGPTGLLIG--AGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~--~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
.+..++.. ...|.... .+ ....+|++||+|+|++++.++.+.. .+++|+ +++ .++++.|+
T Consensus 202 --------~~~~~~~~~~~~~~~~~~-~~-~~~~r~~v~V~Dva~a~~~~l~~~~-----~~~~~i-~~~--~~~s~~el 263 (351)
T PLN02650 202 --------MPPSLITALSLITGNEAH-YS-IIKQGQFVHLDDLCNAHIFLFEHPA-----AEGRYI-CSS--HDATIHDL 263 (351)
T ss_pred --------CCccHHHHHHHhcCCccc-cC-cCCCcceeeHHHHHHHHHHHhcCcC-----cCceEE-ecC--CCcCHHHH
Confidence 11112221 12232211 12 2234799999999999999987543 334784 555 56999999
Q ss_pred HHHHhhhcccc-cCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHH-HHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 413 IDIGKSIVTTE-VPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDA-IIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 413 ~~~~~~~~g~~-~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~-~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
++.+.+.++.. .|.. .+... .. .+....|. ..+.+||+|+. .+.+.+.+ +++||.
T Consensus 264 ~~~i~~~~~~~~~~~~----~~~~~---~~------------~~~~~~d~~k~~~lG~~p~~-~l~egl~~---~i~~~~ 320 (351)
T PLN02650 264 AKMLREKYPEYNIPAR----FPGID---ED------------LKSVEFSSKKLTDLGFTFKY-SLEDMFDG---AIETCR 320 (351)
T ss_pred HHHHHHhCcccCCCCC----CCCcC---cc------------cccccCChHHHHHhCCCCCC-CHHHHHHH---HHHHHH
Confidence 99999875521 1211 11100 00 01111111 13568999987 58888887 556776
Q ss_pred cceEE
Q psy6053 491 NNQWE 495 (614)
Q Consensus 491 ~~~w~ 495 (614)
...|.
T Consensus 321 ~~~~~ 325 (351)
T PLN02650 321 EKGLI 325 (351)
T ss_pred HcCCC
Confidence 55543
|
|
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=255.96 Aligned_cols=337 Identities=20% Similarity=0.222 Sum_probs=244.0
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++.+|+||||+||+|.||+++|++.+. ..+|.+.+.......-..... .. ...+++.+.||+.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~-~~~irv~D~~~~~~~~~~e~~---------------~~-~~~~v~~~~~D~~ 65 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENEL-KLEIRVVDKTPTQSNLPAELT---------------GF-RSGRVTVILGDLL 65 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhccc-ccEEEEeccCccccccchhhh---------------cc-cCCceeEEecchh
Confidence 457899999999999999999999975 356888877654211111000 00 2468999999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC--hhH-HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccc-
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR--FDE-ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVL- 256 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~--~~~-~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i- 256 (614)
+.. .+...++++ .|+||||... +.. ..+...++||.||+++++.|++. +++++||+||++|..+..++
T Consensus 66 ~~~------~i~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~-~v~~lIYtSs~~Vvf~g~~~~ 137 (361)
T KOG1430|consen 66 DAN------SISNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL-GVKRLIYTSSAYVVFGGEPII 137 (361)
T ss_pred hhh------hhhhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh-CCCEEEEecCceEEeCCeecc
Confidence 977 788888999 8888888653 333 36778999999999999999995 99999999999987665542
Q ss_pred --ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 257 --YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 257 --~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+|+ .|.|. .+++.|+.||+.||+++.++.+ .++.++.+||+.|||+.+.-
T Consensus 138 n~~E~-~p~p~--------------------------~~~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~ 190 (361)
T KOG1430|consen 138 NGDES-LPYPL--------------------------KHIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKR 190 (361)
T ss_pred cCCCC-CCCcc--------------------------ccccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcc
Confidence 332 22221 3457999999999999999985 67999999999999997631
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh-hcCCCCccEEEeccCCcccccHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL-SQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~-~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
-...+...+.+|......++++..-|+++++.||.+++.|...-. ......|++|+|+++ +|+..-++
T Consensus 191 ---------~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~--~p~~~~~~ 259 (361)
T KOG1430|consen 191 ---------LLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLDKSPSVNGQFYFITDD--TPVRFFDF 259 (361)
T ss_pred ---------ccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCC--CcchhhHH
Confidence 122455566777777778889999999999999999999887654 333457999999999 78877777
Q ss_pred HHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhhhhhhhc
Q psy6053 413 IDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSG-NKPCLVKIQDRINKGFEVFEYYAN 491 (614)
Q Consensus 413 ~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G-~~P~~~~l~~ki~~~~~~~~~f~~ 491 (614)
+..+.+.+|+..|.. ...|- +..+.-+++..+...+++ +.|.+.+..-. -+.
T Consensus 260 ~~~l~~~lg~~~~~~--~~~p~---------------~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~---------~~~- 312 (361)
T KOG1430|consen 260 LSPLVKALGYCLPSS--IKLPL---------------FLSYFLAYLLEIVYFLLRPYQPILTRFRVA---------LLG- 312 (361)
T ss_pred HHHHHHhcCCCCCce--eecch---------------HHHHHHHHHHHHHHHhccCCCCCcChhhee---------eec-
Confidence 778888889876631 11231 112234566677777777 77877543211 111
Q ss_pred ceEEEechhHHHHHHHcChhccccccCcCCCCCHHHHHHHHHHHHHHH
Q psy6053 492 NQWEFRNEYVHVLRKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIF 539 (614)
Q Consensus 492 ~~w~f~~~n~~~l~~~l~~~D~~~f~~d~~~~dw~~Y~~~~~~G~r~y 539 (614)
-.-.|+.+++++.++.. ..++|++-.+.++.-.+.+
T Consensus 313 ~~~~f~~~kA~~~lgY~------------P~~~~~e~~~~~~~~~~~~ 348 (361)
T KOG1430|consen 313 VTRTFSIEKAKRELGYK------------PLVSLEEAIQRTIHWVASE 348 (361)
T ss_pred cccccCHHHHHHhhCCC------------CcCCHHHHHHHHHHHHhhh
Confidence 23468888888877764 3356777777766544333
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=257.85 Aligned_cols=249 Identities=22% Similarity=0.279 Sum_probs=195.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|+++|++ |+.+.|....... ....+.++.+|+++.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~---V~~~~r~~~~~~~-----------------------~~~~~~~~~~d~~~~ 54 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHD---VRGLDRLRDGLDP-----------------------LLSGVEFVVLDLTDR 54 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCe---EEEEeCCCccccc-----------------------cccccceeeecccch
Confidence 35999999999999999999999988 8999997654211 113578899999987
Q ss_pred CCCCCHHHHHHHhccc-cEEEEcccccChhHHH----HHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC---c
Q psy6053 183 ELAIKESDRQLLASEV-DIMIHGAATIRFDEAL----KKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE---K 254 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~v-d~ViH~AA~v~~~~~~----~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~---~ 254 (614)
+ ....+.+++ |+|||+||........ .....+|+.||.+++++|++ .++++|||.||.++++.. .
T Consensus 55 ~------~~~~~~~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~ss~~~~~~~~~~~ 127 (314)
T COG0451 55 D------LVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFASSVSVVYGDPPPL 127 (314)
T ss_pred H------HHHHHHhcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeCCCceECCCCCCC
Confidence 5 677777778 9999999988755443 35889999999999999999 699999998887655533 2
Q ss_pred cccccc-CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 255 VLYEKP-YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 ~i~E~~-~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
+++|+. .+.|. +.|+.||..+|+++..+.. .|++++|+||+.|||+...
T Consensus 128 ~~~E~~~~~~p~-----------------------------~~Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~ 178 (314)
T COG0451 128 PIDEDLGPPRPL-----------------------------NPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDK 178 (314)
T ss_pred CcccccCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence 455552 11111 3699999999999999987 6899999999999999875
Q ss_pred CCccccCCCCchHHHHHHHhcCce-eeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc-cccHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVI-RTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW-QVSWQ 410 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~-~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~-~it~~ 410 (614)
+. + ++ .....++....++.. ....+++...+++++|||++++++.++.+.. .. +||++++ . +.+.+
T Consensus 179 ~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~-----~~-~~ni~~~--~~~~~~~ 246 (314)
T COG0451 179 PD--L-SS-GVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPD-----GG-VFNIGSG--TAEITVR 246 (314)
T ss_pred CC--C-Cc-CcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCC-----Cc-EEEeCCC--CCcEEHH
Confidence 52 1 11 122334555666664 5666788888999999999999999998765 33 9999998 6 89999
Q ss_pred HHHHHHhhhcccccC
Q psy6053 411 EIIDIGKSIVTTEVP 425 (614)
Q Consensus 411 e~~~~~~~~~g~~~p 425 (614)
|+.+.+.+.+|...+
T Consensus 247 e~~~~~~~~~~~~~~ 261 (314)
T COG0451 247 ELAEAVAEAVGSKAP 261 (314)
T ss_pred HHHHHHHHHhCCCCc
Confidence 999999999888755
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=261.38 Aligned_cols=243 Identities=16% Similarity=0.114 Sum_probs=171.0
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|||||||||||++|+++|++.|++ ++++.|....... .. ....+|+.+..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~---~v~~~~~~~~~~~---~~-----------------------~~~~~~~~d~~- 51 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGIT---DILVVDNLKDGTK---FV-----------------------NLVDLDIADYM- 51 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCc---eEEEecCCCcchH---HH-----------------------hhhhhhhhhhh-
Confidence 899999999999999999999876 5666665432110 00 01123443321
Q ss_pred CCCHHH-HHHHh-----ccccEEEEcccccChh-HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 185 AIKESD-RQLLA-----SEVDIMIHGAATIRFD-EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 185 GLs~~~-~~~l~-----~~vd~ViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
+.++ ++.++ .++|+|||+||..... .......+.|+.||.+++++|++. ++ +|||+||+++++... .
T Consensus 52 --~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~-~~-~~i~~SS~~vyg~~~~~~ 127 (308)
T PRK11150 52 --DKEDFLAQIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTDDF 127 (308)
T ss_pred --hHHHHHHHHhcccccCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEcchHHhCcCCCCC
Confidence 1112 23333 2689999999854321 123457899999999999999995 65 699999998877532 3
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~ 334 (614)
++|+.+..| .+.|+.||..+|++++++.. .+++++++||++|||++..+.
T Consensus 128 ~~E~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~ 178 (308)
T PRK11150 128 IEEREYEKP-----------------------------LNVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHK 178 (308)
T ss_pred CccCCCCCC-----------------------------CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCC
Confidence 455433222 26899999999999998875 689999999999999875431
Q ss_pred ccccCCCCchH-HHHHHHhcCceeeE-eeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 335 PGWTDNINGPT-GLLIGAGKGVIRTM-FCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 335 ~gw~d~~~g~~-~~~~~~~~g~~~~~-~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
+ ...+.. .+...+.+|....+ .++++..+|++||||+|++++.++... .+++||++++ +++|+.|+
T Consensus 179 -~---~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~------~~~~yni~~~--~~~s~~el 246 (308)
T PRK11150 179 -G---SMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENG------VSGIFNCGTG--RAESFQAV 246 (308)
T ss_pred -C---ccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcC------CCCeEEcCCC--CceeHHHH
Confidence 1 111111 22344566654333 356678899999999999998887642 3469999998 88999999
Q ss_pred HHHHhhhccc
Q psy6053 413 IDIGKSIVTT 422 (614)
Q Consensus 413 ~~~~~~~~g~ 422 (614)
++.+.+.+|.
T Consensus 247 ~~~i~~~~~~ 256 (308)
T PRK11150 247 ADAVLAYHKK 256 (308)
T ss_pred HHHHHHHhCC
Confidence 9999998774
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=262.33 Aligned_cols=306 Identities=13% Similarity=0.048 Sum_probs=210.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|||||||||||++|+++|++.|++ |+++.|...... .++++.+.. +... ...++.++.+|+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~---V~~~~r~~~~~~-~~~~~~~~~---------~~~~-~~~~~~~~~~Dl 69 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYE---VHGIIRRSSNFN-TQRLDHIYI---------DPHP-NKARMKLHYGDL 69 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE---EEEEeccccccc-ccchhhhcc---------cccc-ccCceEEEEecC
Confidence 35789999999999999999999999876 888888754211 112221110 0000 224688999999
Q ss_pred CCCCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCc-----eEEEEeCcee
Q psy6053 180 EADELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLE-----LFVHISTAYC 249 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k-----~~V~vST~~~ 249 (614)
++.+ ++..++++ +|+|||+||..... .......++|+.||.+++++|++. +++ +|||+||..+
T Consensus 70 ~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~~~~~~v~~Ss~~v 142 (340)
T PLN02653 70 SDAS------SLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH-GQETGRQIKYYQAGSSEM 142 (340)
T ss_pred CCHH------HHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh-ccccccceeEEEeccHHH
Confidence 9866 67777764 69999999976432 223456789999999999999985 554 8999999877
Q ss_pred ccCCc-ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceee
Q psy6053 250 HLQEK-VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIII 327 (614)
Q Consensus 250 ~~~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~ 327 (614)
++... +++|+....| .+.|+.||..+|++++.++. .+++++..|+.++|
T Consensus 143 yg~~~~~~~E~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~ 193 (340)
T PLN02653 143 YGSTPPPQSETTPFHP-----------------------------RSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHE 193 (340)
T ss_pred hCCCCCCCCCCCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHcCCeEEEeeecccc
Confidence 76543 4555432222 26899999999999998876 68888999999998
Q ss_pred cccCCCCccccCCCC-c-hHHHHHHHhcCcee-eEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCc
Q psy6053 328 PVWREPLPGWTDNIN-G-PTGLLIGAGKGVIR-TMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQE 404 (614)
Q Consensus 328 g~~~~p~~gw~d~~~-g-~~~~~~~~~~g~~~-~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~ 404 (614)
|+...+ ++. . ...++..+..|... ...+++++.+|++||+|+|++++.++.+. .+++||++++
T Consensus 194 gp~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~------~~~~yni~~g-- 259 (340)
T PLN02653 194 SPRRGE------NFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQE------KPDDYVVATE-- 259 (340)
T ss_pred CCCCCc------ccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcC------CCCcEEecCC--
Confidence 875321 111 1 11223334455433 34588999999999999999999998753 2468999999
Q ss_pred ccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHH--HHHHHHHHHhCCChHHHHHHHHHHHH
Q psy6053 405 WQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPA--YFLDAIIFLSGNKPCLVKIQDRINKG 482 (614)
Q Consensus 405 ~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa--~~~d~~~~~~G~~P~~~~l~~ki~~~ 482 (614)
+++|+.|+++.+.+.+|.+.+.. ..+.+. ...... .+. .-.+.+.+.+||+|+. .+.+.+.+.
T Consensus 260 ~~~s~~e~~~~i~~~~g~~~~~~-~~~~~~-~~~~~~------------~~~~~~d~~k~~~~lgw~p~~-~l~~gi~~~ 324 (340)
T PLN02653 260 ESHTVEEFLEEAFGYVGLNWKDH-VEIDPR-YFRPAE------------VDNLKGDASKAREVLGWKPKV-GFEQLVKMM 324 (340)
T ss_pred CceeHHHHHHHHHHHcCCCCCcc-eeeCcc-cCCccc------------cccccCCHHHHHHHhCCCCCC-CHHHHHHHH
Confidence 89999999999999888531110 011110 000000 111 1234456788999998 688888874
Q ss_pred Hh
Q psy6053 483 FE 484 (614)
Q Consensus 483 ~~ 484 (614)
.+
T Consensus 325 ~~ 326 (340)
T PLN02653 325 VD 326 (340)
T ss_pred HH
Confidence 33
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=256.98 Aligned_cols=309 Identities=16% Similarity=0.139 Sum_probs=208.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.|++ |+++.|..... ..++..+.+ . ...++.++.+|++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~~~~~~~--~~~~~~~~~----------~---~~~~~~~~~~Dl~d~ 62 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHD---VVILDNLCNSK--RSVLPVIER----------L---GGKHPTFVEGDIRNE 62 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCe---EEEEecCCCch--HhHHHHHHH----------h---cCCCceEEEccCCCH
Confidence 57999999999999999999999876 77777653322 112211100 0 113567889999986
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
+ .+..+++ ++|+|||+||..... ......+++|+.++.+++++|++. ++++||++||+.+++... +
T Consensus 63 ~------~~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~yg~~~~~~ 135 (338)
T PRK10675 63 A------LLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNLIFSSSATVYGDQPKIP 135 (338)
T ss_pred H------HHHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhhCCCCCCc
Confidence 5 6777665 689999999876532 233467899999999999999994 889999999997766432 4
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecceeecccCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~I~g~~~~p 333 (614)
++|+... +...+.|+.+|..+|+++.++.+ .+++++++|++.+||+....
T Consensus 136 ~~E~~~~----------------------------~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~ 187 (338)
T PRK10675 136 YVESFPT----------------------------GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSG 187 (338)
T ss_pred cccccCC----------------------------CCCCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCccc
Confidence 5554221 01126899999999999998864 37999999999999975321
Q ss_pred CccccCC--CCchHHHHHHHhcCce--eeEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 334 LPGWTDN--INGPTGLLIGAGKGVI--RTMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 334 ~~gw~d~--~~g~~~~~~~~~~g~~--~~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
+-|--+. ..+....+..+..+.. ..+++ ++.+.+++++|+|+|++++.++..... ...+++||++++
T Consensus 188 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~--~~~~~~~ni~~~- 264 (338)
T PRK10675 188 DMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLAN--KPGVHIYNLGAG- 264 (338)
T ss_pred ccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhc--cCCCceEEecCC-
Confidence 1110000 0111223344443321 22222 567889999999999999998875221 114579999998
Q ss_pred cccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHH--HHHHHHHhCCChHHHHHHHHHHH
Q psy6053 404 EWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYF--LDAIIFLSGNKPCLVKIQDRINK 481 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~--~d~~~~~~G~~P~~~~l~~ki~~ 481 (614)
+++|++|+++.+.+.+|.+.+... .|... .. .+... .+.+.+.+||+|.. .+.+.+.+
T Consensus 265 -~~~s~~e~~~~i~~~~g~~~~~~~---~~~~~---~~------------~~~~~~~~~k~~~~lg~~p~~-~~~~~~~~ 324 (338)
T PRK10675 265 -VGSSVLDVVNAFSKACGKPVNYHF---APRRE---GD------------LPAYWADASKADRELNWRVTR-TLDEMAQD 324 (338)
T ss_pred -CceeHHHHHHHHHHHhCCCCCeee---CCCCC---Cc------------hhhhhcCHHHHHHHhCCCCcC-cHHHHHHH
Confidence 889999999999999887654432 22110 00 11122 33446788999986 67777776
Q ss_pred HHhhhhhhh
Q psy6053 482 GFEVFEYYA 490 (614)
Q Consensus 482 ~~~~~~~f~ 490 (614)
+++|+.
T Consensus 325 ---~~~~~~ 330 (338)
T PRK10675 325 ---TWHWQS 330 (338)
T ss_pred ---HHHHHH
Confidence 455554
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=255.70 Aligned_cols=224 Identities=22% Similarity=0.197 Sum_probs=168.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.| + |+++.|... .+.||++++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~---V~~~~~~~~---------------------------------~~~~Dl~d~ 43 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-N---LIALDVHST---------------------------------DYCGDFSNP 43 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-C---EEEeccccc---------------------------------cccCCCCCH
Confidence 579999999999999999999987 5 777877421 246899886
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
+ .+.++++ ++|+||||||....+. ......++|+.||.+++++|++. +. +|||+||.++++... +
T Consensus 44 ~------~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g~-~~v~~Ss~~Vy~~~~~~p 115 (299)
T PRK09987 44 E------GVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-GA-WVVHYSTDYVFPGTGDIP 115 (299)
T ss_pred H------HHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEccceEECCCCCCC
Confidence 5 6777777 5899999999875432 23556789999999999999995 54 799999998886543 5
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
++|+..+.|. |.|+.||..+|+++..+ ..+.+|+||++|||+...
T Consensus 116 ~~E~~~~~P~-----------------------------~~Yg~sK~~~E~~~~~~---~~~~~ilR~~~vyGp~~~--- 160 (299)
T PRK09987 116 WQETDATAPL-----------------------------NVYGETKLAGEKALQEH---CAKHLIFRTSWVYAGKGN--- 160 (299)
T ss_pred cCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHh---CCCEEEEecceecCCCCC---
Confidence 6665433332 78999999999999887 346799999999998531
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeC--CCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCD--NTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~--~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
+ -...++..+..|....+.++ +....+...+|+++.++..++.... ..++||++++ +++|+.|++
T Consensus 161 ----~--~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~-----~~giyni~~~--~~~s~~e~~ 227 (299)
T PRK09987 161 ----N--FAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPE-----VAGLYHLVAS--GTTTWHDYA 227 (299)
T ss_pred ----C--HHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCC-----CCCeEEeeCC--CCccHHHHH
Confidence 1 12234444555555555665 4454455567778888776664322 3469999998 889999999
Q ss_pred HHHhhh
Q psy6053 414 DIGKSI 419 (614)
Q Consensus 414 ~~~~~~ 419 (614)
+.+.+.
T Consensus 228 ~~i~~~ 233 (299)
T PRK09987 228 ALVFEE 233 (299)
T ss_pred HHHHHH
Confidence 998775
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=259.90 Aligned_cols=310 Identities=15% Similarity=0.155 Sum_probs=199.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|||||||||||++++++|++.|++ |++++|.... .+++.+.+ . ...+++++.+|+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~---V~~~~r~~~~---~~~~~~~~------------~--~~~~~~~~~~Dl 67 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYT---VHATLRDPAK---SLHLLSKW------------K--EGDRLRLFRADL 67 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCChHH---HHHHHHhh------------c--cCCeEEEEECCC
Confidence 35789999999999999999999999876 8888886421 11211110 0 124688999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChh-----HHHH-----HHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFD-----EALK-----KAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~-----~~~~-----~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
++++ ++.++++++|+|||+||..... .+.. ..++.|+.||.+++++|++..++++||++||..+
T Consensus 68 ~~~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~v 141 (353)
T PLN02896 68 QEEG------SFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSIST 141 (353)
T ss_pred CCHH------HHHHHHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhh
Confidence 9875 7888888999999999975432 1222 2456677999999999988545889999999877
Q ss_pred ccCC-------cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEe
Q psy6053 250 HLQE-------KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLML 321 (614)
Q Consensus 250 ~~~~-------~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~Iv 321 (614)
++.. .+++|+. +.|.+. ..+ .....+.|+.||.++|+++..+.+ .+++++++
T Consensus 142 yg~~~~~~~~~~~~~E~~-~~p~~~-----------------~~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~l 201 (353)
T PLN02896 142 LTAKDSNGRWRAVVDETC-QTPIDH-----------------VWN--TKASGWVYVLSKLLTEEAAFKYAKENGIDLVSV 201 (353)
T ss_pred ccccccCCCCCCccCccc-CCcHHH-----------------hhc--cCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 6532 1344431 111100 000 001124799999999999999876 79999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceee--Eee---CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRT--MFC---DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~--~~~---~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
||++|||+...+. +......+.....|.... ..+ .....+||+||+|+|++++.++.... .+.+
T Consensus 202 R~~~vyGp~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~-----~~~~ 270 (353)
T PLN02896 202 ITTTVAGPFLTPS------VPSSIQVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTK-----AEGR 270 (353)
T ss_pred cCCcccCCCcCCC------CCchHHHHHHHhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCC-----cCcc
Confidence 9999999976431 111111122222332111 111 11224699999999999999987532 3457
Q ss_pred EEeccCCcccccHHHHHHHHhhhcccc-cCCCCccccCCcccccchhHHHHHHHHHhhhHHH-HHHHHHHHhCCChHHHH
Q psy6053 397 VHLTSSQEWQVSWQEIIDIGKSIVTTE-VPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAY-FLDAIIFLSGNKPCLVK 474 (614)
Q Consensus 397 yni~~~~~~~it~~e~~~~~~~~~g~~-~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~-~~d~~~~~~G~~P~~~~ 474 (614)
|++ ++ ++++++|+++.+.+.++.. .+.......+. . .|.. -.+. .+.+||+|.. .
T Consensus 271 ~~~-~~--~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~-~~~lGw~p~~-~ 327 (353)
T PLN02896 271 YIC-CV--DSYDMSELINHLSKEYPCSNIQVRLDEEKRG-S-----------------IPSEISSKK-LRDLGFEYKY-G 327 (353)
T ss_pred EEe-cC--CCCCHHHHHHHHHHhCCCCCccccccccccC-c-----------------cccccCHHH-HHHcCCCccC-C
Confidence 865 45 5799999999999986532 11111000000 0 1111 1223 3458999987 5
Q ss_pred HHHHHHHHHhhhhhhhcc
Q psy6053 475 IQDRINKGFEVFEYYANN 492 (614)
Q Consensus 475 l~~ki~~~~~~~~~f~~~ 492 (614)
+.+.+.+ .++|+..+
T Consensus 328 l~~~i~~---~~~~~~~~ 342 (353)
T PLN02896 328 IEEIIDQ---TIDCCVDH 342 (353)
T ss_pred HHHHHHH---HHHHHHHC
Confidence 7788877 45555433
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=253.31 Aligned_cols=237 Identities=15% Similarity=0.144 Sum_probs=172.6
Q ss_pred EEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCCC
Q psy6053 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELA 185 (614)
Q Consensus 106 LITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lG 185 (614)
||||||||||++|++.|++.|++ |+++.+. ..+|+++..
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~---v~~~~~~------------------------------------~~~Dl~~~~-- 39 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFT---NLVLRTH------------------------------------KELDLTRQA-- 39 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCc---EEEeecc------------------------------------ccCCCCCHH--
Confidence 69999999999999999999877 4443221 147888755
Q ss_pred CCHHHHHHHhc--cccEEEEcccccCh----hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC--cccc
Q psy6053 186 IKESDRQLLAS--EVDIMIHGAATIRF----DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE--KVLY 257 (614)
Q Consensus 186 Ls~~~~~~l~~--~vd~ViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~--~~i~ 257 (614)
++..+++ ++|+||||||..+. .......++.|+.||.+++++|++. ++++|||+||.++++.. .+++
T Consensus 40 ----~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~~~~ 114 (306)
T PLN02725 40 ----DVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRH-GVKKLLFLGSSCIYPKFAPQPIP 114 (306)
T ss_pred ----HHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHc-CCCeEEEeCceeecCCCCCCCCC
Confidence 6777766 57999999997542 1234567899999999999999995 88999999999887743 2445
Q ss_pred cccCCC-CCChhHHHHHHhhcchhHHhhhhhhhcCCCCC-chhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCC
Q psy6053 258 EKPYPP-PTDPHKLIERVEMMSEDTVEKRAKEFLGEFPN-SYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 258 E~~~~~-p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn-~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~ 334 (614)
|+.... |. ..++ .|+.||..+|++++.+.+ .+++++++||+.|||+...-
T Consensus 115 E~~~~~~~~--------------------------~p~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~- 167 (306)
T PLN02725 115 ETALLTGPP--------------------------EPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNF- 167 (306)
T ss_pred HHHhccCCC--------------------------CCCcchHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCC-
Confidence 542110 11 0113 499999999999988766 68999999999999997421
Q ss_pred ccccCCCCchHHHH----HHHhcCceeeE-eeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccH
Q psy6053 335 PGWTDNINGPTGLL----IGAGKGVIRTM-FCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSW 409 (614)
Q Consensus 335 ~gw~d~~~g~~~~~----~~~~~g~~~~~-~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~ 409 (614)
.+-..+. ...++ .....|..... ++++++.++++||+|+|++++.++.... ..+.||++++ +++++
T Consensus 168 ~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~-----~~~~~ni~~~--~~~s~ 238 (306)
T PLN02725 168 HPENSHV--IPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYS-----GAEHVNVGSG--DEVTI 238 (306)
T ss_pred CCCCCcc--cHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccc-----cCcceEeCCC--CcccH
Confidence 1100011 11222 22234443333 6788899999999999999999887542 3467899988 88999
Q ss_pred HHHHHHHhhhccccc
Q psy6053 410 QEIIDIGKSIVTTEV 424 (614)
Q Consensus 410 ~e~~~~~~~~~g~~~ 424 (614)
.|+++.+.+.+|.+.
T Consensus 239 ~e~~~~i~~~~~~~~ 253 (306)
T PLN02725 239 KELAELVKEVVGFEG 253 (306)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999877643
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=249.28 Aligned_cols=248 Identities=19% Similarity=0.211 Sum_probs=185.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||+|+++++.|++.|++ |+++.|+...... + ...+++++.+|++++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~---~-------------------~~~~~~~~~~D~~~~ 55 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEE---VRVLVRPTSDRRN---L-------------------EGLDVEIVEGDLRDP 55 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCE---EEEEEecCccccc---c-------------------ccCCceEEEeeCCCH
Confidence 57999999999999999999999875 8999997543110 0 113688999999987
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC---ccccc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE---KVLYE 258 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~---~~i~E 258 (614)
+ ++.++++++|+|||+|+.... ........++|+.|+.+++++|++ .+++++|++||.++++.. .+++|
T Consensus 56 ~------~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~e 128 (328)
T TIGR03466 56 A------SLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALE-AGVERVVYTSSVATLGVRGDGTPADE 128 (328)
T ss_pred H------HHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEechhhcCcCCCCCCcCc
Confidence 5 788889999999999986532 234567889999999999999999 488999999999776632 24455
Q ss_pred ccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCccc
Q psy6053 259 KPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPGW 337 (614)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~gw 337 (614)
+....|. ...+.|+.+|..+|+++.++.. .+++++++||+.+||+.....
T Consensus 129 ~~~~~~~--------------------------~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~--- 179 (328)
T TIGR03466 129 TTPSSLD--------------------------DMIGHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKP--- 179 (328)
T ss_pred cCCCCcc--------------------------cccChHHHHHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCC---
Confidence 4222111 1125799999999999999876 589999999999999864210
Q ss_pred cCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHh
Q psy6053 338 TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGK 417 (614)
Q Consensus 338 ~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~ 417 (614)
.....++.....+..... .+...++++++|+|++++.++.+.. .+..||++ + ++++++|+++.+.
T Consensus 180 ----~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~D~a~a~~~~~~~~~-----~~~~~~~~-~--~~~s~~e~~~~i~ 244 (328)
T TIGR03466 180 ----TPTGRIIVDFLNGKMPAY---VDTGLNLVHVDDVAEGHLLALERGR-----IGERYILG-G--ENLTLKQILDKLA 244 (328)
T ss_pred ----CcHHHHHHHHHcCCCcee---eCCCcceEEHHHHHHHHHHHHhCCC-----CCceEEec-C--CCcCHHHHHHHHH
Confidence 111234444444433222 2344689999999999998886632 56788885 4 5799999999999
Q ss_pred hhcccccCC
Q psy6053 418 SIVTTEVPL 426 (614)
Q Consensus 418 ~~~g~~~p~ 426 (614)
+.+|.+.+.
T Consensus 245 ~~~g~~~~~ 253 (328)
T TIGR03466 245 EITGRPAPR 253 (328)
T ss_pred HHhCCCCCC
Confidence 998876543
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=236.07 Aligned_cols=298 Identities=19% Similarity=0.220 Sum_probs=219.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+++|+||||.||+|+||+++|+..|++ |++++--..+.. +.++... ...+++.+.-|+.
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~---VIa~Dn~ftg~k--~n~~~~~---------------~~~~fel~~hdv~ 85 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHE---VIALDNYFTGRK--ENLEHWI---------------GHPNFELIRHDVV 85 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCe---EEEEecccccch--hhcchhc---------------cCcceeEEEeech
Confidence 3589999999999999999999999977 788876554421 1111111 3345666666766
Q ss_pred CCCCCCCHHHHHHHhccccEEEEccccc---ChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATI---RFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v---~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
.+ ++.+||.|||+||.. ++..+.-..+.+|+.||.+++.+|++. + ++|++.||+-++++.. +
T Consensus 86 ~p-----------l~~evD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv-~-aR~l~aSTseVYgdp~~hp 152 (350)
T KOG1429|consen 86 EP-----------LLKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRV-G-ARFLLASTSEVYGDPLVHP 152 (350)
T ss_pred hH-----------HHHHhhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHh-C-ceEEEeecccccCCcccCC
Confidence 53 678999999999974 455555567889999999999999995 4 8999999998887743 3
Q ss_pred cccccC--CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 256 LYEKPY--PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 256 i~E~~~--~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
..|..+ -.|.+++ ..|...|.++|.++..+.+ .|+.+.|.|+.++|||.-
T Consensus 153 q~e~ywg~vnpigpr--------------------------~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm- 205 (350)
T KOG1429|consen 153 QVETYWGNVNPIGPR--------------------------SCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRM- 205 (350)
T ss_pred CccccccccCcCCch--------------------------hhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCcc-
Confidence 333321 1233322 6799999999999999998 899999999999999875
Q ss_pred CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
.|.|. .-...++....++....++|+|.+.++|.+|+|++++++++...+.. .-+|++++ +..|+.|+
T Consensus 206 ---~~~dg-rvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~------~pvNiGnp--~e~Tm~el 273 (350)
T KOG1429|consen 206 ---HMDDG-RVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYR------GPVNIGNP--GEFTMLEL 273 (350)
T ss_pred ---ccCCC-hhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCc------CCcccCCc--cceeHHHH
Confidence 34442 22335677788888889999999999999999999999999987652 23899999 78999999
Q ss_pred HHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 413 IDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 413 ~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
++++.+..+....+....-.|...-.. .|. +..+.+.+||.|++ ++.+++.. ++.||.
T Consensus 274 Aemv~~~~~~~s~i~~~~~~~Ddp~kR--------------~pD--it~ake~LgW~Pkv-~L~egL~~---t~~~fr 331 (350)
T KOG1429|consen 274 AEMVKELIGPVSEIEFVENGPDDPRKR--------------KPD--ITKAKEQLGWEPKV-SLREGLPL---TVTYFR 331 (350)
T ss_pred HHHHHHHcCCCcceeecCCCCCCcccc--------------Ccc--HHHHHHHhCCCCCC-cHHHhhHH---HHHHHH
Confidence 999999865433222211122221111 111 23457889999998 78888877 555664
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=239.66 Aligned_cols=227 Identities=24% Similarity=0.304 Sum_probs=181.2
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|||||||||+|++|+++|+++|+. |+.+.|.+....... ...++.++.+|+.+.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~---v~~~~~~~~~~~~~~---------------------~~~~~~~~~~dl~~~~- 55 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE---VIVLSRSSNSESFEE---------------------KKLNVEFVIGDLTDKE- 55 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE---EEEEESCSTGGHHHH---------------------HHTTEEEEESETTSHH-
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc---ccccccccccccccc---------------------ccceEEEEEeeccccc-
Confidence 799999999999999999999887 778888876532111 1127899999999865
Q ss_pred CCCHHHHHHHhccc--cEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC--cccc
Q psy6053 185 AIKESDRQLLASEV--DIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE--KVLY 257 (614)
Q Consensus 185 GLs~~~~~~l~~~v--d~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~--~~i~ 257 (614)
.+++++++. |+|||+||.... ........+.|+.++.+++++|++. ++++|||+||+.+++.. .+++
T Consensus 56 -----~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~sS~~~y~~~~~~~~~ 129 (236)
T PF01370_consen 56 -----QLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GVKRFIFLSSASVYGDPDGEPID 129 (236)
T ss_dssp -----HHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEGGGGTSSSSSSBE
T ss_pred -----cccccccccCceEEEEeeccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 888888866 999999998642 1345677899999999999999995 77999999999777765 2556
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCcc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~g 336 (614)
|+....|. +.|+.+|..+|++++.+.+ .+++++++||+.|||+. .+..
T Consensus 130 e~~~~~~~-----------------------------~~Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~-~~~~- 178 (236)
T PF01370_consen 130 EDSPINPL-----------------------------SPYGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPG-NPNN- 178 (236)
T ss_dssp TTSGCCHS-----------------------------SHHHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTT-SSSS-
T ss_pred cccccccc-----------------------------ccccccccccccccccccccccccccccccccccccc-cccc-
Confidence 65332222 6799999999999999887 69999999999999998 1111
Q ss_pred ccCCCCch-HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 337 WTDNINGP-TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 337 w~d~~~g~-~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+..+. ..++..+.+|....+++++++.++++||+|+|++++.++.+... .+++||++
T Consensus 179 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~----~~~~yNig 236 (236)
T PF01370_consen 179 ---NSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKA----AGGIYNIG 236 (236)
T ss_dssp ---STSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCT----TTEEEEES
T ss_pred ---ccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCC----CCCEEEeC
Confidence 11222 35677777888777789999999999999999999999988752 68899985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=245.87 Aligned_cols=293 Identities=15% Similarity=0.133 Sum_probs=197.7
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|||||||||+|++++++|++.|+. .|+++.|..+.. ++.++ ....+.+|+++++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~--~v~~~~~~~~~~----~~~~~-------------------~~~~~~~d~~~~~- 54 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT--DILVVDNLRDGH----KFLNL-------------------ADLVIADYIDKED- 54 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc--eEEEEecCCCch----hhhhh-------------------hheeeeccCcchh-
Confidence 699999999999999999999863 377777754321 11111 0124667887755
Q ss_pred CCCHHHHHHHh----ccccEEEEcccccChh-HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-cccc
Q psy6053 185 AIKESDRQLLA----SEVDIMIHGAATIRFD-EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-VLYE 258 (614)
Q Consensus 185 GLs~~~~~~l~----~~vd~ViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-~i~E 258 (614)
..+.+. .++|+|||+||..... .+.....++|+.||.+++++|++. ++ +|||+||.++++... ++.|
T Consensus 55 -----~~~~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~~~~~~e 127 (314)
T TIGR02197 55 -----FLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-GI-PFIYASSAATYGDGEAGFRE 127 (314)
T ss_pred -----HHHHHHhhccCCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-CC-cEEEEccHHhcCCCCCCccc
Confidence 455554 4799999999975432 234567899999999999999994 55 799999998876432 2333
Q ss_pred ccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEeecceeecccCCCCc
Q psy6053 259 KPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvRp~~I~g~~~~p~~ 335 (614)
+..+. ...+.|+.||..+|++++++.. .+++++++||+.|||++..+..
T Consensus 128 ~~~~~----------------------------~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~ 179 (314)
T TIGR02197 128 GRELE----------------------------RPLNVYGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKG 179 (314)
T ss_pred ccCcC----------------------------CCCCHHHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCC
Confidence 21100 1127899999999999987532 3679999999999998754211
Q ss_pred cccCCCCc-hHHHHHHHhcCceeeEe------eCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccccc
Q psy6053 336 GWTDNING-PTGLLIGAGKGVIRTMF------CDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVS 408 (614)
Q Consensus 336 gw~d~~~g-~~~~~~~~~~g~~~~~~------~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it 408 (614)
...+ ...++..+..|....+. +++++.++++||||+++++..++.. . .+++||++++ +++|
T Consensus 180 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~-~-----~~~~yni~~~--~~~s 247 (314)
T TIGR02197 180 ----KMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN-G-----VSGIFNLGTG--RARS 247 (314)
T ss_pred ----CcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc-c-----cCceEEcCCC--CCcc
Confidence 1111 12344445555433332 4677889999999999999998876 2 4579999998 8999
Q ss_pred HHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy6053 409 WQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGF 483 (614)
Q Consensus 409 ~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~ 483 (614)
++|+++.+.+.+|.+.+.. ....|..... ... .....-.+.+.+.+||+|.. .+.+.+.++.
T Consensus 248 ~~e~~~~i~~~~g~~~~~~-~~~~~~~~~~--~~~---------~~~~~~~~k~~~~l~~~p~~-~l~~~l~~~~ 309 (314)
T TIGR02197 248 FNDLADAVFKALGKDEKIE-YIPMPEALRG--KYQ---------YFTQADITKLRAAGYYGPFT-TLEEGVKDYV 309 (314)
T ss_pred HHHHHHHHHHHhCCCCcce-eccCcccccc--ccc---------cccccchHHHHHhcCCCCcc-cHHHHHHHHH
Confidence 9999999999888653222 1112221100 000 00112234556788999987 7778877743
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=238.08 Aligned_cols=320 Identities=18% Similarity=0.149 Sum_probs=232.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++||||||+||+|+|.+-+|++.|++|--|--+.|.- .....|++++.. ...+|.++++|++|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~--~~sl~r~~~l~~--------------~~~~v~f~~~Dl~D 65 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSY--LESLKRVRQLLG--------------EGKSVFFVEGDLND 65 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccc--hhHHHHHHHhcC--------------CCCceEEEEeccCC
Confidence 57999999999999999999999999953333344443 334566666532 23689999999999
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChhHHH---HHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFDEAL---KKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~~---~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
.. .++++++ +.|.|+|.||.-...++. ......|+.||.++|+.+++. +++.+|+.||+.+++...
T Consensus 66 ~~------~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~-~~~~~V~sssatvYG~p~~i 138 (343)
T KOG1371|consen 66 AE------ALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAH-NVKALVFSSSATVYGLPTKV 138 (343)
T ss_pred HH------HHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHc-CCceEEEecceeeecCccee
Confidence 66 7888887 579999999986544333 357889999999999999995 699999999998888765
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
++.|+.... ...|+|+.||...|.++..... .++.++++|..+++|..-.+
T Consensus 139 p~te~~~t~----------------------------~p~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~G 190 (343)
T KOG1371|consen 139 PITEEDPTD----------------------------QPTNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSG 190 (343)
T ss_pred eccCcCCCC----------------------------CCCCcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccC
Confidence 667763322 1128999999999999999988 67999999999999943222
Q ss_pred C-----ccccCCCCchHHHHHHHhcCcee--eE------eeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 334 L-----PGWTDNINGPTGLLIGAGKGVIR--TM------FCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 334 ~-----~gw~d~~~g~~~~~~~~~~g~~~--~~------~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
. .+...|+. ..+.....|... .. ..+++..+|.++|-|.|+..+.++..... .....+||++
T Consensus 191 r~ge~p~~~~nnl~---p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~v~Dla~~h~~al~k~~~--~~~~~i~Nlg 265 (343)
T KOG1371|consen 191 RIGEAPLGIPNNLL---PYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIHVLDLADGHVAALGKLRG--AAEFGVYNLG 265 (343)
T ss_pred ccCCCCccCccccc---ccccchhhcccccceeecCcccccCCCeeecceeeEehHHHHHHHhhcccc--chheeeEeec
Confidence 1 12111211 112222222221 11 23568999999999999999999987542 1245699999
Q ss_pred cCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy6053 401 SSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRIN 480 (614)
Q Consensus 401 ~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~ 480 (614)
++ .+.+..++...+.+.+|.+.|.......++.... .+ .-.....+.+||+|... +++.++
T Consensus 266 tg--~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~------------~y----a~~~~a~~elgwk~~~~-iee~c~ 326 (343)
T KOG1371|consen 266 TG--KGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAF------------VY----ANPSKAQRELGWKAKYG-LQEMLK 326 (343)
T ss_pred CC--CCccHHHHHHHHHHHhcCCCCccccCCCCCCcee------------ee----eChHHHHHHhCCccccC-HHHHHH
Confidence 99 8999999999999999999887643333332100 00 11244578899999985 777766
Q ss_pred HHHhhhhhhhcceEEEech
Q psy6053 481 KGFEVFEYYANNQWEFRNE 499 (614)
Q Consensus 481 ~~~~~~~~f~~~~w~f~~~ 499 (614)
. .++|..++.+.|+++
T Consensus 327 d---lw~W~~~np~gy~~~ 342 (343)
T KOG1371|consen 327 D---LWRWQKQNPSGYDTK 342 (343)
T ss_pred H---HHHHHhcCCCcCCCC
Confidence 5 778888888777654
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=255.03 Aligned_cols=268 Identities=15% Similarity=0.143 Sum_probs=185.2
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-.++|+|||||||||||++|+++|++.|++ |++++|.... .+.+.++... . +... ...++.++.+|
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~---V~~~~r~~~~---~~~l~~l~~~------~-~~~~-~~~~~~~v~~D 115 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYS---VRIAVDTQED---KEKLREMEMF------G-EMGR-SNDGIWTVMAN 115 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHhhh------c-cccc-cCCceEEEEcC
Confidence 356899999999999999999999999987 7777886321 1222221100 0 0000 11358899999
Q ss_pred CCCCCCCCCHHHHHHHhccccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce--eccC-
Q psy6053 179 AEADELAIKESDRQLLASEVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY--CHLQ- 252 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~--~~~~- 252 (614)
+++++ ++.++++++|.|||+|+.++... ......++|+.||.+++++|++..++++|||+||.. +++.
T Consensus 116 l~d~~------~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~ 189 (367)
T PLN02686 116 LTEPE------SLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQN 189 (367)
T ss_pred CCCHH------HHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhccccc
Confidence 99976 78888899999999999764322 123566889999999999999855799999999963 3332
Q ss_pred ---C--cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeeccee
Q psy6053 253 ---E--KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSII 326 (614)
Q Consensus 253 ---~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I 326 (614)
. ..++|+.... ++ ......+.|+.||..+|++++.+.. .|++++++||+.|
T Consensus 190 ~~~~~~~~i~E~~~~~---------------~~--------~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~v 246 (367)
T PLN02686 190 YPHDLPPVIDEESWSD---------------ES--------FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALV 246 (367)
T ss_pred CCCCCCcccCCCCCCC---------------hh--------hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCce
Confidence 1 1234432110 00 0001125799999999999998766 6999999999999
Q ss_pred ecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc
Q psy6053 327 IPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ 406 (614)
Q Consensus 327 ~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~ 406 (614)
||+...+. .+..+ .....|.. .+++++ ..++++|||+|++++.++..... ...+++| ++++ ++
T Consensus 247 yGp~~~~~--------~~~~~-~~~~~g~~-~~~g~g--~~~~v~V~Dva~A~~~al~~~~~--~~~~~~y-i~~g--~~ 309 (367)
T PLN02686 247 TGPGFFRR--------NSTAT-IAYLKGAQ-EMLADG--LLATADVERLAEAHVCVYEAMGN--KTAFGRY-ICFD--HV 309 (367)
T ss_pred ECCCCCCC--------CChhH-HHHhcCCC-ccCCCC--CcCeEEHHHHHHHHHHHHhccCC--CCCCCcE-EEeC--CC
Confidence 99964321 12222 23445542 234443 45799999999999999874311 0245688 7777 78
Q ss_pred ccHHHHHHHHhhhcccccCC
Q psy6053 407 VSWQEIIDIGKSIVTTEVPL 426 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~~p~ 426 (614)
++++|+++.+.+.+|.+.+.
T Consensus 310 ~s~~e~~~~i~~~~g~~~~~ 329 (367)
T PLN02686 310 VSREDEAEELARQIGLPINK 329 (367)
T ss_pred ccHHHHHHHHHHHcCCCCCc
Confidence 99999999999998876543
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=247.33 Aligned_cols=226 Identities=15% Similarity=0.144 Sum_probs=172.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||+|++|+++|+++|++ |.+++|+.... ..+ ...+++++.||++++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~---V~~l~R~~~~~---~~l-------------------~~~~v~~v~~Dl~d~ 55 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQ---VRCLVRNLRKA---SFL-------------------KEWGAELVYGDLSLP 55 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCe---EEEEEcChHHh---hhH-------------------hhcCCEEEECCCCCH
Confidence 58999999999999999999999976 99999974321 101 113688999999987
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccCC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYP 262 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~~ 262 (614)
+ .+..+++++|+|||+++... .......++|+.|+.+++++|++ .++++|||+||..+.. ++
T Consensus 56 ~------~l~~al~g~d~Vi~~~~~~~--~~~~~~~~~~~~~~~~l~~aa~~-~gvkr~I~~Ss~~~~~---------~~ 117 (317)
T CHL00194 56 E------TLPPSFKGVTAIIDASTSRP--SDLYNAKQIDWDGKLALIEAAKA-AKIKRFIFFSILNAEQ---------YP 117 (317)
T ss_pred H------HHHHHHCCCCEEEECCCCCC--CCccchhhhhHHHHHHHHHHHHH-cCCCEEEEeccccccc---------cC
Confidence 6 78899999999999976432 22335678899999999999999 4899999999964311 00
Q ss_pred CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCC
Q psy6053 263 PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNIN 342 (614)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~ 342 (614)
+.+|..+|..+|+++++. +++++|+||+.+++..-.
T Consensus 118 -------------------------------~~~~~~~K~~~e~~l~~~---~l~~tilRp~~~~~~~~~---------- 153 (317)
T CHL00194 118 -------------------------------YIPLMKLKSDIEQKLKKS---GIPYTIFRLAGFFQGLIS---------- 153 (317)
T ss_pred -------------------------------CChHHHHHHHHHHHHHHc---CCCeEEEeecHHhhhhhh----------
Confidence 146889999999998764 899999999977653110
Q ss_pred chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhccc
Q psy6053 343 GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTT 422 (614)
Q Consensus 343 g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~ 422 (614)
........+.. .....++..+++++++|+|++++.++..+.. .+++||++++ +++|++|+++.+.+.+|.
T Consensus 154 ---~~~~~~~~~~~-~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~----~~~~~ni~g~--~~~s~~el~~~~~~~~g~ 223 (317)
T CHL00194 154 ---QYAIPILEKQP-IWITNESTPISYIDTQDAAKFCLKSLSLPET----KNKTFPLVGP--KSWNSSEIISLCEQLSGQ 223 (317)
T ss_pred ---hhhhhhccCCc-eEecCCCCccCccCHHHHHHHHHHHhcCccc----cCcEEEecCC--CccCHHHHHHHHHHHhCC
Confidence 01111222222 2234566778999999999999988865432 6789999999 889999999999999888
Q ss_pred ccC
Q psy6053 423 EVP 425 (614)
Q Consensus 423 ~~p 425 (614)
+.+
T Consensus 224 ~~~ 226 (317)
T CHL00194 224 KAK 226 (317)
T ss_pred CCe
Confidence 543
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=242.18 Aligned_cols=308 Identities=19% Similarity=0.196 Sum_probs=208.0
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|||||||||+|+.++++|++.|++ |+++.|..+.. .+++.... ...+++.+.+|+++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~---V~~~~~~~~~~--~~~~~~~~---------------~~~~~~~~~~D~~~~~ 60 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHE---VVVLDNLSNGS--PEALKRGE---------------RITRVTFVEGDLRDRE 60 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCe---EEEEeCCCccc--hhhhhhhc---------------cccceEEEECCCCCHH
Confidence 5899999999999999999999876 66666543321 11221110 1125788899999876
Q ss_pred CCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--cc
Q psy6053 184 LAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VL 256 (614)
Q Consensus 184 lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i 256 (614)
++..+++ ++|+|||+||...... .....++.|+.|+.+++++|.+. +++++|++||.++++... ++
T Consensus 61 ------~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~ss~~~~g~~~~~~~ 133 (328)
T TIGR01179 61 ------LLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVKKFIFSSSAAVYGEPSSIPI 133 (328)
T ss_pred ------HHHHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCCEEEEecchhhcCCCCCCCc
Confidence 6777765 6999999999764322 23456789999999999999984 788999999987665432 44
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecceeecccCCCC
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~I~g~~~~p~ 334 (614)
+|+....| .+.|+.+|+.+|+++..+.. .+++++|+||+.|||+...+.
T Consensus 134 ~e~~~~~~-----------------------------~~~y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~ 184 (328)
T TIGR01179 134 SEDSPLGP-----------------------------INPYGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGT 184 (328)
T ss_pred cccCCCCC-----------------------------CCchHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCc
Confidence 45422111 26899999999999988754 489999999999999976554
Q ss_pred ccccCC-CCchHHHHHHHhcCc--eeeEe------eCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc
Q psy6053 335 PGWTDN-INGPTGLLIGAGKGV--IRTMF------CDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW 405 (614)
Q Consensus 335 ~gw~d~-~~g~~~~~~~~~~g~--~~~~~------~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~ 405 (614)
.++... .......+.....|. ...+. ++++...++||++|+++++..++..... ...+++||++++ +
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~--~~~~~~~n~~~~--~ 260 (328)
T TIGR01179 185 IGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLN--GGESHVYNLGYG--Q 260 (328)
T ss_pred cccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhc--CCCcceEEcCCC--C
Confidence 443211 111112222222211 11111 2567788999999999999998876431 125689999998 8
Q ss_pred cccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy6053 406 QVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEV 485 (614)
Q Consensus 406 ~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~ 485 (614)
++|++|+++.+.+.+|.+.++....+.+... .. ...-.+.+.+.+||+|....+.+.+.+ .
T Consensus 261 ~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~~~lg~~p~~~~l~~~~~~---~ 321 (328)
T TIGR01179 261 GFSVLEVIEAFKKVSGVDFPVELAPRRPGDP---AS-------------LVADASKIRRELGWQPKYTDLEIIIKT---A 321 (328)
T ss_pred cccHHHHHHHHHHHhCCCcceEeCCCCCccc---cc-------------hhcchHHHHHHhCCCCCcchHHHHHHH---H
Confidence 8999999999999988765543211111000 00 001134456778999988668777776 3
Q ss_pred hhhhh
Q psy6053 486 FEYYA 490 (614)
Q Consensus 486 ~~~f~ 490 (614)
++|+.
T Consensus 322 ~~~~~ 326 (328)
T TIGR01179 322 WRWES 326 (328)
T ss_pred HHHHh
Confidence 44543
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=238.20 Aligned_cols=236 Identities=19% Similarity=0.198 Sum_probs=174.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|||||||||+|++++++|++.|. ..+|+++.|.... ...+.+. . ...++.++.+|+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~-~~~V~~~~r~~~~---~~~~~~~------------~---~~~~~~~v~~Dl 62 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYN-PKKIIIYSRDELK---QWEMQQK------------F---PAPCLRFFIGDV 62 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCC-CcEEEEEcCChhH---HHHHHHH------------h---CCCcEEEEEccC
Confidence 4689999999999999999999999862 2358888886422 1112111 0 114688999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVL 256 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i 256 (614)
++++ ++..+++++|+|||+||.... ..+....+++|+.|+.+++++|.+. ++++||++||.....
T Consensus 63 ~d~~------~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS~~~~~----- 130 (324)
T TIGR03589 63 RDKE------RLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVKRVVALSTDKAAN----- 130 (324)
T ss_pred CCHH------HHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-----
Confidence 9875 788888999999999997532 2233568899999999999999994 788999999963210
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecceeecccCC
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g~~~~ 332 (614)
| .++|+.||+.+|+++..+.. .|++++++|||+|+|+...
T Consensus 131 -------p-----------------------------~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~ 174 (324)
T TIGR03589 131 -------P-----------------------------INLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS 174 (324)
T ss_pred -------C-----------------------------CCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC
Confidence 1 16799999999999976432 5899999999999997421
Q ss_pred CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
....+...+..|......++++..++|++|+|+|++++.++.+.. .+.+|+ +++ ...++.|+
T Consensus 175 ----------~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~~~-----~~~~~~-~~~--~~~sv~el 236 (324)
T TIGR03589 175 ----------VVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLERML-----GGEIFV-PKI--PSMKITDL 236 (324)
T ss_pred ----------cHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhhCC-----CCCEEc-cCC--CcEEHHHH
Confidence 111233333445311222467888999999999999999987532 456884 554 56899999
Q ss_pred HHHHhhhc
Q psy6053 413 IDIGKSIV 420 (614)
Q Consensus 413 ~~~~~~~~ 420 (614)
++.+.+..
T Consensus 237 ~~~i~~~~ 244 (324)
T TIGR03589 237 AEAMAPEC 244 (324)
T ss_pred HHHHHhhC
Confidence 99999863
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=235.70 Aligned_cols=224 Identities=22% Similarity=0.209 Sum_probs=171.4
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|||||||||+|++++++|++.|++ |+++.|. .+|+.+++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~---v~~~~r~-------------------------------------~~d~~~~~ 40 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRV---VVALTSS-------------------------------------QLDLTDPE 40 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCE---EEEeCCc-------------------------------------ccCCCCHH
Confidence 4899999999999999999999876 7888774 24666544
Q ss_pred CCCCHHHHHHHhccc--cEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--cc
Q psy6053 184 LAIKESDRQLLASEV--DIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VL 256 (614)
Q Consensus 184 lGLs~~~~~~l~~~v--d~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i 256 (614)
++..+++++ |+|||+||..... ......+++|+.|+.+++++|++. +. +|||+||.++++... ++
T Consensus 41 ------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~Ss~~vy~~~~~~~~ 112 (287)
T TIGR01214 41 ------ALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-GA-RLVHISTDYVFDGEGKRPY 112 (287)
T ss_pred ------HHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeeeeecCCCCCCC
Confidence 677777765 9999999976543 234567899999999999999985 44 899999998876532 45
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~g 336 (614)
+|+..+.| .+.|+.+|..+|++++.+ +++++|+||++|||+...
T Consensus 113 ~E~~~~~~-----------------------------~~~Y~~~K~~~E~~~~~~---~~~~~ilR~~~v~G~~~~---- 156 (287)
T TIGR01214 113 REDDATNP-----------------------------LNVYGQSKLAGEQAIRAA---GPNALIVRTSWLYGGGGG---- 156 (287)
T ss_pred CCCCCCCC-----------------------------cchhhHHHHHHHHHHHHh---CCCeEEEEeeecccCCCC----
Confidence 55432221 278999999999999887 789999999999998641
Q ss_pred ccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHH
Q psy6053 337 WTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIG 416 (614)
Q Consensus 337 w~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~ 416 (614)
......++..+..+....+. ++...+++++||+|+++..++..... .+++||++++ +++++.|+++.+
T Consensus 157 ----~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~Dva~a~~~~~~~~~~----~~~~~ni~~~--~~~s~~e~~~~i 224 (287)
T TIGR01214 157 ----RNFVRTMLRLAGRGEELRVV--DDQIGSPTYAKDLARVIAALLQRLAR----ARGVYHLANS--GQCSWYEFAQAI 224 (287)
T ss_pred ----CCHHHHHHHHhhcCCCceEe--cCCCcCCcCHHHHHHHHHHHHhhccC----CCCeEEEECC--CCcCHHHHHHHH
Confidence 01122344444444322223 34678999999999999999876422 5789999998 889999999999
Q ss_pred hhhcccc
Q psy6053 417 KSIVTTE 423 (614)
Q Consensus 417 ~~~~g~~ 423 (614)
.+.+|.+
T Consensus 225 ~~~~~~~ 231 (287)
T TIGR01214 225 FEEAGAD 231 (287)
T ss_pred HHHhCcc
Confidence 9998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=234.45 Aligned_cols=254 Identities=14% Similarity=0.119 Sum_probs=177.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++|||||||||+|++++++|+++|++ |++++|+.+.....+.+.++ .. ...+++++.+|+++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~---V~~~~R~~~~~~~~~~~~~l-------------~~-~~~~~~~~~~Dl~d 68 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYT---VHAAVQKNGETEIEKEIRGL-------------SC-EEERLKVFDVDPLD 68 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCE---EEEEEcCchhhhHHHHHHhc-------------cc-CCCceEEEEecCCC
Confidence 578999999999999999999999987 88888864322111111111 00 12468899999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceec--c-CC----
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCH--L-QE---- 253 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~--~-~~---- 253 (614)
++ .+..++.++|.|+|+++.... ....+..+++|+.||.+++++|.+..+++++|++||..+. + ..
T Consensus 69 ~~------~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~ 142 (297)
T PLN02583 69 YH------SILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQ 142 (297)
T ss_pred HH------HHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCC
Confidence 76 788888999999998865532 2234678999999999999999885468999999998543 2 11
Q ss_pred cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 254 KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 254 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
.+++|+.+..+ . ........|+.||.++|++++.+.+ .|++++++||+.|+|+...
T Consensus 143 ~~~~E~~~~~~---~--------------------~~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~ 199 (297)
T PLN02583 143 KDVDERSWSDQ---N--------------------FCRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLT 199 (297)
T ss_pred CCCCcccCCCH---H--------------------HHhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCC
Confidence 13344321110 0 0001113699999999999988765 6999999999999998653
Q ss_pred CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
+.. + ...+... . .+.....+|+|+|||++++.++..+. .++.|+++++ +...+.++
T Consensus 200 ~~~--------~------~~~~~~~-~--~~~~~~~~v~V~Dva~a~~~al~~~~-----~~~r~~~~~~--~~~~~~~~ 255 (297)
T PLN02583 200 QHN--------P------YLKGAAQ-M--YENGVLVTVDVNFLVDAHIRAFEDVS-----SYGRYLCFNH--IVNTEEDA 255 (297)
T ss_pred Cch--------h------hhcCCcc-c--CcccCcceEEHHHHHHHHHHHhcCcc-----cCCcEEEecC--CCccHHHH
Confidence 210 0 1222211 1 12335679999999999999998654 3457999887 54557889
Q ss_pred HHHHhhhcccccCC
Q psy6053 413 IDIGKSIVTTEVPL 426 (614)
Q Consensus 413 ~~~~~~~~g~~~p~ 426 (614)
.+++.+. ....|.
T Consensus 256 ~~~~~~~-~p~~~~ 268 (297)
T PLN02583 256 VKLAQML-SPLIPS 268 (297)
T ss_pred HHHHHHh-CCCCCC
Confidence 9999987 333443
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=243.79 Aligned_cols=239 Identities=16% Similarity=0.166 Sum_probs=179.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++|+|||||||+|++++++|+++|++ |++++|+..+........+.. . ...+++++.||+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~---V~~l~R~~~~~~~~~~~~~~~-------------~-~~~~v~~v~~Dl 120 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYN---VVAVAREKSGIRGKNGKEDTK-------------K-ELPGAEVVFGDV 120 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEEechhhccccchhhHHh-------------h-hcCCceEEEeeC
Confidence 45789999999999999999999999876 899999764321111001110 0 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc----cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcc
Q psy6053 180 EADELAIKESDRQLLAS----EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKV 255 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~----~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~ 255 (614)
++++ .+..+++ ++|+||||+|.... ......++|+.++.+++++|++. ++++||++||.++..+
T Consensus 121 ~d~~------~l~~~~~~~~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~-gv~r~V~iSS~~v~~p--- 188 (390)
T PLN02657 121 TDAD------SLRKVLFSEGDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREV-GAKHFVLLSAICVQKP--- 188 (390)
T ss_pred CCHH------HHHHHHHHhCCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHc-CCCEEEEEeeccccCc---
Confidence 9976 7888777 59999999885321 11244678999999999999994 8999999999875321
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
.+.|..+|..+|+.+.+.. .+++++|+||+.+||..
T Consensus 189 --------------------------------------~~~~~~sK~~~E~~l~~~~-~gl~~tIlRp~~~~~~~----- 224 (390)
T PLN02657 189 --------------------------------------LLEFQRAKLKFEAELQALD-SDFTYSIVRPTAFFKSL----- 224 (390)
T ss_pred --------------------------------------chHHHHHHHHHHHHHHhcc-CCCCEEEEccHHHhccc-----
Confidence 0468889999999987622 48999999999988641
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccc-cceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYA-DFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~-d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
.+.+..+..|....++++++... ++|+++|+|.+++.++.++.. .+++||++++. +.+|++|+.+
T Consensus 225 ---------~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~----~~~~~~Iggp~-~~~S~~Eia~ 290 (390)
T PLN02657 225 ---------GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESK----INKVLPIGGPG-KALTPLEQGE 290 (390)
T ss_pred ---------HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccc----cCCEEEcCCCC-cccCHHHHHH
Confidence 12333445566555678877654 679999999999998865432 57899998741 4799999999
Q ss_pred HHhhhcccccC
Q psy6053 415 IGKSIVTTEVP 425 (614)
Q Consensus 415 ~~~~~~g~~~p 425 (614)
.+.+.+|.+.+
T Consensus 291 ~l~~~lG~~~~ 301 (390)
T PLN02657 291 MLFRILGKEPK 301 (390)
T ss_pred HHHHHhCCCCc
Confidence 99999887533
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=239.85 Aligned_cols=290 Identities=12% Similarity=0.127 Sum_probs=194.3
Q ss_pred CcEEEEe----cccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 102 GKTLFMT----GASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 102 ~~~VLIT----GaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.++|||| |||||+|++|+++|++.|++ |++++|...... .+.. .-+..+.+ . ...+++++.|
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~---V~~l~R~~~~~~---~~~~----~~~~~~~~-l---~~~~v~~v~~ 117 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHE---VTLFTRGKEPSQ---KMKK----EPFSRFSE-L---SSAGVKTVWG 117 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCE---EEEEecCCcchh---hhcc----CchhhhhH-h---hhcCceEEEe
Confidence 4789999 99999999999999999986 899999864311 1100 00000000 0 1135889999
Q ss_pred CCCCCCCCCCHHHHHHHh--ccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-
Q psy6053 178 DAEADELAIKESDRQLLA--SEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK- 254 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~--~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~- 254 (614)
|+.+ +..++ .++|+|||+++. +..++++++++|++ .++++|||+||.++++...
T Consensus 118 D~~d---------~~~~~~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~-~gvkr~V~~SS~~vyg~~~~ 174 (378)
T PLN00016 118 DPAD---------VKSKVAGAGFDVVYDNNGK-------------DLDEVEPVADWAKS-PGLKQFLFCSSAGVYKKSDE 174 (378)
T ss_pred cHHH---------HHhhhccCCccEEEeCCCC-------------CHHHHHHHHHHHHH-cCCCEEEEEccHhhcCCCCC
Confidence 9876 22222 479999999763 24578899999999 4899999999998876532
Q ss_pred -ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCC
Q psy6053 255 -VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 -~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p 333 (614)
+..|... .+++. +|..+|+++++. +++++|+||+.+||+....
T Consensus 175 ~p~~E~~~--------------------------------~~p~~-sK~~~E~~l~~~---~l~~~ilRp~~vyG~~~~~ 218 (378)
T PLN00016 175 PPHVEGDA--------------------------------VKPKA-GHLEVEAYLQKL---GVNWTSFRPQYIYGPGNNK 218 (378)
T ss_pred CCCCCCCc--------------------------------CCCcc-hHHHHHHHHHHc---CCCeEEEeceeEECCCCCC
Confidence 2222210 12222 899999998754 8999999999999986421
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
.....++..+..|....+++++++.++++|++|+|++++.++.++.. .+++||++++ +++|+.|++
T Consensus 219 --------~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~----~~~~yni~~~--~~~s~~el~ 284 (378)
T PLN00016 219 --------DCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKA----AGQIFNIVSD--RAVTFDGMA 284 (378)
T ss_pred --------chHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccc----cCCEEEecCC--CccCHHHHH
Confidence 11122444555665555677888999999999999999999876432 5689999998 889999999
Q ss_pred HHHhhhcccccCCCCccccCCc-cccc-chhHHHHHHHHHhhhHHH--HHHHHHHHhCCChHHHHHHHHHHHHHhhhhhh
Q psy6053 414 DIGKSIVTTEVPLNGCVWYPGG-SMKS-NRLLHQICVIFFHMIPAY--FLDAIIFLSGNKPCLVKIQDRINKGFEVFEYY 489 (614)
Q Consensus 414 ~~~~~~~g~~~p~~~~~~~p~~-~~~~-~~~~~~~~~~~~~~~pa~--~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f 489 (614)
+.+.+.+|.+..+.. +-|.. .... ....+. ...+ -.+.+.+.+||+|.. .+.+.+.+ .++||
T Consensus 285 ~~i~~~~g~~~~i~~--~~~~~~~~~~~~~~p~~--------~~~~~~d~~ka~~~LGw~p~~-~l~egl~~---~~~~~ 350 (378)
T PLN00016 285 KACAKAAGFPEEIVH--YDPKAVGFGAKKAFPFR--------DQHFFASPRKAKEELGWTPKF-DLVEDLKD---RYELY 350 (378)
T ss_pred HHHHHHhCCCCceee--cCccccCcccccccccc--------ccccccCHHHHHHhcCCCCCC-CHHHHHHH---HHHHH
Confidence 999999887542211 11110 0000 000000 0111 234556789999987 67777776 45555
Q ss_pred hcc
Q psy6053 490 ANN 492 (614)
Q Consensus 490 ~~~ 492 (614)
..+
T Consensus 351 ~~~ 353 (378)
T PLN00016 351 FGR 353 (378)
T ss_pred Hhc
Confidence 443
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=227.31 Aligned_cols=236 Identities=15% Similarity=0.129 Sum_probs=161.8
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|||||||||||+++++.|++.|++ |++++|+....... ....+. |+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~----------------------~~~~~~----~~~~--- 48 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHE---VTILTRSPPAGANT----------------------KWEGYK----PWAP--- 48 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCE---EEEEeCCCCCCCcc----------------------cceeee----cccc---
Confidence 699999999999999999999876 99999986542110 000111 1111
Q ss_pred CCCHHHHHHHhccccEEEEcccccChh-----HHHHHHHHHhHHHHHHHHHHHHHcCCC--ceEEEEeCceeccCC--cc
Q psy6053 185 AIKESDRQLLASEVDIMIHGAATIRFD-----EALKKAVLLNTRGTKMMLSLAKEMKHL--ELFVHISTAYCHLQE--KV 255 (614)
Q Consensus 185 GLs~~~~~~l~~~vd~ViH~AA~v~~~-----~~~~~~~~~Nv~gt~~ll~la~~~~~~--k~~V~vST~~~~~~~--~~ 255 (614)
......+.++|+|||+||..... .......++|+.+|++++++|++. ++ ..|++.||.++++.. .+
T Consensus 49 ----~~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~~i~~S~~~~yg~~~~~~ 123 (292)
T TIGR01777 49 ----LAESEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA-EQKPKVFISASAVGYYGTSEDRV 123 (292)
T ss_pred ----cchhhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc-CCCceEEEEeeeEEEeCCCCCCC
Confidence 12344567899999999975432 233567889999999999999995 55 357777776666543 24
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
++|+..+.|. +.|+..+...|+.+....+.+++++|+||+.|||+..
T Consensus 124 ~~E~~~~~~~-----------------------------~~~~~~~~~~e~~~~~~~~~~~~~~ilR~~~v~G~~~---- 170 (292)
T TIGR01777 124 FTEEDSPAGD-----------------------------DFLAELCRDWEEAAQAAEDLGTRVVLLRTGIVLGPKG---- 170 (292)
T ss_pred cCcccCCCCC-----------------------------ChHHHHHHHHHHHhhhchhcCCceEEEeeeeEECCCc----
Confidence 5554311111 2345566666777665444589999999999999853
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
++. ..++.....+. ....++++..+++++|||+|+++..++.++. ..++||++++ +++|+.|+++.
T Consensus 171 ~~~------~~~~~~~~~~~-~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~-----~~g~~~~~~~--~~~s~~di~~~ 236 (292)
T TIGR01777 171 GAL------AKMLPPFRLGL-GGPLGSGRQWFSWIHIEDLVQLILFALENAS-----ISGPVNATAP--EPVRNKEFAKA 236 (292)
T ss_pred chh------HHHHHHHhcCc-ccccCCCCcccccEeHHHHHHHHHHHhcCcc-----cCCceEecCC--CccCHHHHHHH
Confidence 111 11111111111 1124678899999999999999999986543 4569999998 89999999999
Q ss_pred Hhhhccccc
Q psy6053 416 GKSIVTTEV 424 (614)
Q Consensus 416 ~~~~~g~~~ 424 (614)
+.+.+|.+.
T Consensus 237 i~~~~g~~~ 245 (292)
T TIGR01777 237 LARALHRPA 245 (292)
T ss_pred HHHHhCCCC
Confidence 999988653
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=233.86 Aligned_cols=245 Identities=22% Similarity=0.209 Sum_probs=199.6
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
.+..++.||+||||||||-+|+.+++++++.+|. +|+.+.|++.+.. -++. .++..+|. .++.+
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~--~i~l~~~~E~~~~---~i~~--------el~~~~~~---~~~~~ 306 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPK--EIILFSRDEYKLY---LIDM--------ELREKFPE---LKLRF 306 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCC--EEEEecCchHHHH---HHHH--------HHHhhCCC---cceEE
Confidence 4677899999999999999999999999999765 8999999875432 1221 12222232 68999
Q ss_pred EeCCCCCCCCCCCHHHHHHHhcc--ccEEEEcccccC---hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc-e
Q psy6053 175 ISGDAEADELAIKESDRQLLASE--VDIMIHGAATIR---FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA-Y 248 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~---~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~-~ 248 (614)
+-||+.|.+ .++.++++ +|+|||+||.-+ ...+..+++++||.||+|++++|.++ ++++||.+||. +
T Consensus 307 ~igdVrD~~------~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKA 379 (588)
T COG1086 307 YIGDVRDRD------RVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKA 379 (588)
T ss_pred EecccccHH------HHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcc
Confidence 999999977 88999997 999999999754 34566789999999999999999995 99999999998 4
Q ss_pred eccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--C--CCCEEEeecc
Q psy6053 249 CHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--N--GMPCLMLRPS 324 (614)
Q Consensus 249 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~--glp~~IvRp~ 324 (614)
+++ .|.||.||.+||.++..+.. . +-..+.+|.|
T Consensus 380 V~P------------------------------------------tNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFG 417 (588)
T COG1086 380 VNP------------------------------------------TNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFG 417 (588)
T ss_pred cCC------------------------------------------chHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEec
Confidence 332 28999999999999999876 2 4789999999
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCc
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQE 404 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~ 404 (614)
+|.|+..+-+| -+...+.+|..-+ .-+++..+-|+.+++.++.++.|+.... .+++|-+--|
T Consensus 418 NVlGSrGSViP----------lFk~QI~~GgplT-vTdp~mtRyfMTI~EAv~LVlqA~a~~~-----gGeifvldMG-- 479 (588)
T COG1086 418 NVLGSRGSVIP----------LFKKQIAEGGPLT-VTDPDMTRFFMTIPEAVQLVLQAGAIAK-----GGEIFVLDMG-- 479 (588)
T ss_pred ceecCCCCCHH----------HHHHHHHcCCCcc-ccCCCceeEEEEHHHHHHHHHHHHhhcC-----CCcEEEEcCC--
Confidence 99998754332 2334456664433 3578999999999999999999987754 7899999998
Q ss_pred ccccHHHHHHHHhhhccc
Q psy6053 405 WQVSWQEIIDIGKSIVTT 422 (614)
Q Consensus 405 ~~it~~e~~~~~~~~~g~ 422 (614)
+|++..|+++.+.+..|.
T Consensus 480 epvkI~dLAk~mi~l~g~ 497 (588)
T COG1086 480 EPVKIIDLAKAMIELAGQ 497 (588)
T ss_pred CCeEHHHHHHHHHHHhCC
Confidence 899999999999999883
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-25 Score=219.20 Aligned_cols=240 Identities=23% Similarity=0.236 Sum_probs=169.4
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhcccc-ccCeEEEEeCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQK-IIDKVLPISGDAEADE 183 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~-~~~~v~~v~gDl~~~~ 183 (614)
||||||+|.+|+.|+++|++.+|. +|+++.|+..+. -.++. .++...++. ....+.++.||+++.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~--~lil~d~~E~~l---~~l~~--------~l~~~~~~~~v~~~~~~vigDvrd~~ 67 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK--KLILFDRDENKL---YELER--------ELRSRFPDPKVRFEIVPVIGDVRDKE 67 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S--EEEEEES-HHHH---HHHHH--------HCHHHC--TTCEEEEE--CTSCCHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCC--eEEEeCCChhHH---HHHHH--------HHhhcccccCcccccCceeecccCHH
Confidence 799999999999999999999875 799999975432 11211 122122220 1124567799999976
Q ss_pred CCCCHHHHHHHhc--cccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccc
Q psy6053 184 LAIKESDRQLLAS--EVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYE 258 (614)
Q Consensus 184 lGLs~~~~~~l~~--~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E 258 (614)
.+..+++ ++|+|||+||.-+. .....+++++||.||+|++++|.+. ++++||++||.-+..+
T Consensus 68 ------~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~P------ 134 (293)
T PF02719_consen 68 ------RLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNP------ 134 (293)
T ss_dssp ------HHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS-------
T ss_pred ------HHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCC------
Confidence 7889988 89999999997553 2345678999999999999999995 9999999999843211
Q ss_pred ccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-C---CCCEEEeecceeecccCCCC
Q psy6053 259 KPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-N---GMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~---glp~~IvRp~~I~g~~~~p~ 334 (614)
.|.||.||.++|+++..+.. . +..++++|.|+|.|+..+-+
T Consensus 135 -----------------------------------tnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVi 179 (293)
T PF02719_consen 135 -----------------------------------TNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVI 179 (293)
T ss_dssp ------------------------------------SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCH
T ss_pred -----------------------------------CcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHH
Confidence 18999999999999999987 2 57899999999999875433
Q ss_pred ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 335 PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
| .+...+.+|.+.++ -+++..+-|+.+++.++.++.++.... .+++|..--+ +|+++.|+++
T Consensus 180 p----------~F~~Qi~~g~PlTv-T~p~mtRffmti~EAv~Lvl~a~~~~~-----~geifvl~mg--~~v~I~dlA~ 241 (293)
T PF02719_consen 180 P----------LFKKQIKNGGPLTV-TDPDMTRFFMTIEEAVQLVLQAAALAK-----GGEIFVLDMG--EPVKILDLAE 241 (293)
T ss_dssp H----------HHHHHHHTTSSEEE-CETT-EEEEE-HHHHHHHHHHHHHH-------TTEEEEE-----TCEECCCHHH
T ss_pred H----------HHHHHHHcCCccee-CCCCcEEEEecHHHHHHHHHHHHhhCC-----CCcEEEecCC--CCcCHHHHHH
Confidence 3 34555667755443 478899999999999999999987754 6889999888 8999999999
Q ss_pred HHhhhcccc
Q psy6053 415 IGKSIVTTE 423 (614)
Q Consensus 415 ~~~~~~g~~ 423 (614)
.+.+..|.+
T Consensus 242 ~~i~~~g~~ 250 (293)
T PF02719_consen 242 AMIELSGLE 250 (293)
T ss_dssp HHHHHTT-E
T ss_pred HHHhhcccc
Confidence 999987764
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=220.04 Aligned_cols=228 Identities=27% Similarity=0.234 Sum_probs=159.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+||||||||+||++|.+.|.++|++ |++..|. ..|++++
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~---v~~~~r~-------------------------------------~~dl~d~ 40 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYE---VIATSRS-------------------------------------DLDLTDP 40 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEE---EEEESTT-------------------------------------CS-TTSH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCE---EEEeCch-------------------------------------hcCCCCH
Confidence 78999999999999999999988755 6776554 3466654
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
+ .+..+++ +.|+||||||..+.+ ...+.+.++|+.++.++.++|.+. + .++||+||.+|+.... +
T Consensus 41 ~------~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~-~-~~li~~STd~VFdG~~~~~ 112 (286)
T PF04321_consen 41 E------AVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER-G-ARLIHISTDYVFDGDKGGP 112 (286)
T ss_dssp H------HHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC-T--EEEEEEEGGGS-SSTSSS
T ss_pred H------HHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc-C-CcEEEeeccEEEcCCcccc
Confidence 3 6666665 489999999987654 355678999999999999999994 4 5899999999986653 5
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
..|+..+.|. |.||.||..+|+.+.+.. -...|+|++.+||....
T Consensus 113 y~E~d~~~P~-----------------------------~~YG~~K~~~E~~v~~~~---~~~~IlR~~~~~g~~~~--- 157 (286)
T PF04321_consen 113 YTEDDPPNPL-----------------------------NVYGRSKLEGEQAVRAAC---PNALILRTSWVYGPSGR--- 157 (286)
T ss_dssp B-TTS----S-----------------------------SHHHHHHHHHHHHHHHH----SSEEEEEE-SEESSSSS---
T ss_pred cccCCCCCCC-----------------------------CHHHHHHHHHHHHHHHhc---CCEEEEecceecccCCC---
Confidence 6777555554 899999999999999863 38999999999998332
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
+-...++..+..|.... ...+.....++++|+|+++..++.+...+ ....++||++++ +.+|+.|+.+.
T Consensus 158 ------~~~~~~~~~~~~~~~i~--~~~d~~~~p~~~~dlA~~i~~l~~~~~~~-~~~~Giyh~~~~--~~~S~~e~~~~ 226 (286)
T PF04321_consen 158 ------NFLRWLLRRLRQGEPIK--LFDDQYRSPTYVDDLARVILELIEKNLSG-ASPWGIYHLSGP--ERVSRYEFAEA 226 (286)
T ss_dssp ------SHHHHHHHHHHCTSEEE--EESSCEE--EEHHHHHHHHHHHHHHHHH--GGG-EEEE---B--S-EEHHHHHHH
T ss_pred ------chhhhHHHHHhcCCeeE--eeCCceeCCEEHHHHHHHHHHHHHhcccc-cccceeEEEecC--cccCHHHHHHH
Confidence 11223444455555433 34577889999999999999999876521 124689999999 88999999999
Q ss_pred Hhhhccccc
Q psy6053 416 GKSIVTTEV 424 (614)
Q Consensus 416 ~~~~~g~~~ 424 (614)
+.+.+|.+.
T Consensus 227 i~~~~~~~~ 235 (286)
T PF04321_consen 227 IAKILGLDP 235 (286)
T ss_dssp HHHHHTHCT
T ss_pred HHHHhCCCC
Confidence 999988765
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=207.80 Aligned_cols=221 Identities=24% Similarity=0.239 Sum_probs=175.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||++|.||..|.+.|. .+.+ |+++.|+. .|++++
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~---v~a~~~~~-------------------------------------~Ditd~ 39 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFE---VIATDRAE-------------------------------------LDITDP 39 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCce---EEeccCcc-------------------------------------ccccCh
Confidence 459999999999999999887 3344 77777741 688887
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
+ ...++++ +.|+|||+||.++.+. ..+.++.+|..|+.++.++|.+. + .++||+||.||+.... +
T Consensus 40 ~------~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~-g-a~lVhiSTDyVFDG~~~~~ 111 (281)
T COG1091 40 D------AVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV-G-ARLVHISTDYVFDGEKGGP 111 (281)
T ss_pred H------HHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh-C-CeEEEeecceEecCCCCCC
Confidence 6 6777777 4699999999987653 34678999999999999999996 4 4799999999986654 5
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
..|+..+.|. |-||+||+++|+.++++ +-...|+|.+.+||....
T Consensus 112 Y~E~D~~~P~-----------------------------nvYG~sKl~GE~~v~~~---~~~~~I~Rtswv~g~~g~--- 156 (281)
T COG1091 112 YKETDTPNPL-----------------------------NVYGRSKLAGEEAVRAA---GPRHLILRTSWVYGEYGN--- 156 (281)
T ss_pred CCCCCCCCCh-----------------------------hhhhHHHHHHHHHHHHh---CCCEEEEEeeeeecCCCC---
Confidence 7787777665 88999999999999999 458899999999998642
Q ss_pred cccCCCCchHH-HHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 336 GWTDNINGPTG-LLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 336 gw~d~~~g~~~-~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
+... ++.....|.. +....++....+++.|+|+++..++.... .+++||+++. ..+||-|+.+
T Consensus 157 -------nFv~tml~la~~~~~--l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~-----~~~~yH~~~~--g~~Swydfa~ 220 (281)
T COG1091 157 -------NFVKTMLRLAKEGKE--LKVVDDQYGSPTYTEDLADAILELLEKEK-----EGGVYHLVNS--GECSWYEFAK 220 (281)
T ss_pred -------CHHHHHHHHhhcCCc--eEEECCeeeCCccHHHHHHHHHHHHhccc-----cCcEEEEeCC--CcccHHHHHH
Confidence 2222 3333344432 23456788889999999999999887754 4559999998 6689999999
Q ss_pred HHhhhcccc
Q psy6053 415 IGKSIVTTE 423 (614)
Q Consensus 415 ~~~~~~g~~ 423 (614)
.+.+.++.+
T Consensus 221 ~I~~~~~~~ 229 (281)
T COG1091 221 AIFEEAGVD 229 (281)
T ss_pred HHHHHhCCC
Confidence 999997754
|
|
| >PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-25 Score=186.50 Aligned_cols=94 Identities=38% Similarity=0.741 Sum_probs=92.3
Q ss_pred HHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcceEEEechhHHHHHHHcChhccccccCcCCCCCHHHHH
Q psy6053 450 FFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERIEYKIDGEDLDIKKYF 529 (614)
Q Consensus 450 ~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~D~~~f~~d~~~~dw~~Y~ 529 (614)
++|++||+++|.++++.|++|++.++++++.++.++++||++++|.|+++|+++|++.|+++||+.|+||++++||++|+
T Consensus 1 ~~h~lPA~~~D~~~~l~g~kp~~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~~Y~ 80 (94)
T PF03015_consen 1 LFHFLPAYLLDLILRLFGQKPRMVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWEEYF 80 (94)
T ss_pred CcchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q psy6053 530 QDCIMATRIFILKE 543 (614)
Q Consensus 530 ~~~~~G~r~y~~ke 543 (614)
++|+.|+|+|++||
T Consensus 81 ~~~~~G~rkyllke 94 (94)
T PF03015_consen 81 RNYIPGIRKYLLKE 94 (94)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999998
|
The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=215.09 Aligned_cols=216 Identities=14% Similarity=0.104 Sum_probs=149.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||||++|++.|+++|++ |+...+. +.+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~---V~~~~~~----------------------------------------~~~ 45 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGID---FHYGSGR----------------------------------------LEN 45 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCE---EEEecCc----------------------------------------cCC
Confidence 478999999999999999999999887 4432111 111
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccC------hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIR------FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE 253 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~------~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~ 253 (614)
.. .+...++ ++|+|||+||... ........+++|+.||.+++++|++. +++ ++++||..+++..
T Consensus 46 ~~------~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-gv~-~v~~sS~~vy~~~ 117 (298)
T PLN02778 46 RA------SLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER-GLV-LTNYATGCIFEYD 117 (298)
T ss_pred HH------HHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCC-EEEEecceEeCCC
Confidence 10 1222222 6899999999763 22344678899999999999999995 776 5666766554321
Q ss_pred c--------ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecce
Q psy6053 254 K--------VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSI 325 (614)
Q Consensus 254 ~--------~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~ 325 (614)
. ++.|+..+.| ..+.|+.||.++|+++..+. +..++|+++
T Consensus 118 ~~~p~~~~~~~~Ee~~p~~----------------------------~~s~Yg~sK~~~E~~~~~y~----~~~~lr~~~ 165 (298)
T PLN02778 118 DAHPLGSGIGFKEEDTPNF----------------------------TGSFYSKTKAMVEELLKNYE----NVCTLRVRM 165 (298)
T ss_pred CCCCcccCCCCCcCCCCCC----------------------------CCCchHHHHHHHHHHHHHhh----ccEEeeecc
Confidence 1 2333321111 12789999999999998874 356888877
Q ss_pred eecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc
Q psy6053 326 IIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW 405 (614)
Q Consensus 326 I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~ 405 (614)
++|... ..+..++..+..+......+ .++++++|++++++.++... ..++||++++ .
T Consensus 166 ~~~~~~----------~~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l~~~------~~g~yNigs~--~ 222 (298)
T PLN02778 166 PISSDL----------SNPRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMAKRN------LTGIYNFTNP--G 222 (298)
T ss_pred cCCccc----------ccHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHHhCC------CCCeEEeCCC--C
Confidence 766521 11234555565554322222 37999999999999987542 2369999998 7
Q ss_pred cccHHHHHHHHhhhcccc
Q psy6053 406 QVSWQEIIDIGKSIVTTE 423 (614)
Q Consensus 406 ~it~~e~~~~~~~~~g~~ 423 (614)
++|+.|+++.+.+.+|.+
T Consensus 223 ~iS~~el~~~i~~~~~~~ 240 (298)
T PLN02778 223 VVSHNEILEMYRDYIDPS 240 (298)
T ss_pred cccHHHHHHHHHHHhCCC
Confidence 899999999999998854
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=236.11 Aligned_cols=257 Identities=14% Similarity=0.079 Sum_probs=179.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+|||||||+|++++++|++.|++ |++++|..... ...++.++.+|++++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~---Vv~l~R~~~~~-------------------------~~~~v~~v~gDL~D~ 52 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHE---VVGIARHRPDS-------------------------WPSSADFIAADIRDA 52 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE---EEEEECCchhh-------------------------cccCceEEEeeCCCH
Confidence 57999999999999999999999876 88888864210 113578899999987
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccCC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYP 262 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~~ 262 (614)
+ ++..+++++|+|||+|+.... ..++|+.||.+++++|++. ++++|||+||..
T Consensus 53 ~------~l~~al~~vD~VVHlAa~~~~------~~~vNv~GT~nLLeAa~~~-gvkr~V~iSS~~-------------- 105 (854)
T PRK05865 53 T------AVESAMTGADVVAHCAWVRGR------NDHINIDGTANVLKAMAET-GTGRIVFTSSGH-------------- 105 (854)
T ss_pred H------HHHHHHhCCCEEEECCCcccc------hHHHHHHHHHHHHHHHHHc-CCCeEEEECCcH--------------
Confidence 6 788888999999999986532 4588999999999999994 889999999851
Q ss_pred CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCC
Q psy6053 263 PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNIN 342 (614)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~ 342 (614)
|..+|+++.++ +++++|+||++|||+.. +
T Consensus 106 --------------------------------------K~aaE~ll~~~---gl~~vILRp~~VYGP~~---~------- 134 (854)
T PRK05865 106 --------------------------------------QPRVEQMLADC---GLEWVAVRCALIFGRNV---D------- 134 (854)
T ss_pred --------------------------------------HHHHHHHHHHc---CCCEEEEEeceEeCCCh---H-------
Confidence 67788888654 89999999999999841 1
Q ss_pred chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhccc
Q psy6053 343 GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTT 422 (614)
Q Consensus 343 g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~ 422 (614)
.++..+.. ......++++..+|++||+|+|++++.++..... .+++||++++ +++|++|+++.+.+...
T Consensus 135 ---~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~----~ggvyNIgsg--~~~Si~EIae~l~~~~~- 203 (854)
T PRK05865 135 ---NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVI----DSGPVNLAAP--GELTFRRIAAALGRPMV- 203 (854)
T ss_pred ---HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhCCCc----CCCeEEEECC--CcccHHHHHHHHhhhhc-
Confidence 12222221 1111224456677999999999999988764321 4679999999 88999999998876421
Q ss_pred ccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 423 EVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 423 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
..+......... ..... .....+..-.+.+.+.+||+|+. .+.+.+.+ .++||.
T Consensus 204 ~v~~~~~~~~~~------~~~~~----~~~~~~~~D~sKar~~LGw~P~~-sLeeGL~d---ti~~~r 257 (854)
T PRK05865 204 PIGSPVLRRVTS------FAELE----LLHSAPLMDVTLLRDRWGFQPAW-NAEECLED---FTLAVR 257 (854)
T ss_pred cCCchhhhhccc------hhhhh----cccCCccCCHHHHHHHhCCCCCC-CHHHHHHH---HHHHHH
Confidence 111100000000 00000 00001122345556789999987 67777776 444443
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=184.22 Aligned_cols=232 Identities=15% Similarity=0.163 Sum_probs=157.9
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|+|||||||||++|+..|.+.||+ |+.++|+....+. + ....+..+.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~---v~iltR~~~~~~~--~--------------------~~~~v~~~~-------- 47 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQ---VTILTRRPPKASQ--N--------------------LHPNVTLWE-------- 47 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCe---EEEEEcCCcchhh--h--------------------cCccccccc--------
Confidence 689999999999999999999988 9999998765321 0 111222111
Q ss_pred CCCHHHHHHHhc-cccEEEEcccccC----hhHHHHH-HHHHhHHHHHHHHHHHHHc-CCCceEEEEeCceecc--CCcc
Q psy6053 185 AIKESDRQLLAS-EVDIMIHGAATIR----FDEALKK-AVLLNTRGTKMMLSLAKEM-KHLELFVHISTAYCHL--QEKV 255 (614)
Q Consensus 185 GLs~~~~~~l~~-~vd~ViH~AA~v~----~~~~~~~-~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~~~~~--~~~~ 255 (614)
.+..... ++|+|||+||..- ++...++ .++.-+..|+.|.++..++ .+++.|+--|...-|+ ....
T Consensus 48 -----~~~~~~~~~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~ 122 (297)
T COG1090 48 -----GLADALTLGIDAVINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRV 122 (297)
T ss_pred -----hhhhcccCCCCEEEECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCcee
Confidence 2233333 7999999999642 4555544 6888999999999998864 2445555555553344 3446
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHH---HHHHHHHHHhhCCCCEEEeecceeecccCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKC---LSEGLVVEAMNNGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~---~aE~lv~~~~~~glp~~IvRp~~I~g~~~~ 332 (614)
++|+.. | +-+++-- .=|+...++...|.+++++|.|+|.|+...
T Consensus 123 ~tE~~~--~-------------------------------g~~Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GG 169 (297)
T COG1090 123 VTEESP--P-------------------------------GDDFLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGG 169 (297)
T ss_pred eecCCC--C-------------------------------CCChHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCc
Confidence 666611 1 1111111 124444444445899999999999997531
Q ss_pred CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
..+..--....+.|. -.|+|.+.++|||+||++++|..+..+.. ..+.||+++| +|++.++|
T Consensus 170 --------aL~~m~~~fk~glGG---~~GsGrQ~~SWIhieD~v~~I~fll~~~~-----lsGp~N~taP--~PV~~~~F 231 (297)
T COG1090 170 --------ALGKMLPLFKLGLGG---KLGSGRQWFSWIHIEDLVNAILFLLENEQ-----LSGPFNLTAP--NPVRNKEF 231 (297)
T ss_pred --------chhhhcchhhhccCC---ccCCCCceeeeeeHHHHHHHHHHHHhCcC-----CCCcccccCC--CcCcHHHH
Confidence 111111111222222 25899999999999999999999998865 5679999999 99999999
Q ss_pred HHHHhhhcccccC
Q psy6053 413 IDIGKSIVTTEVP 425 (614)
Q Consensus 413 ~~~~~~~~g~~~p 425 (614)
...+.+.++++.+
T Consensus 232 ~~al~r~l~RP~~ 244 (297)
T COG1090 232 AHALGRALHRPAI 244 (297)
T ss_pred HHHHHHHhCCCcc
Confidence 9999999776543
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=188.98 Aligned_cols=211 Identities=11% Similarity=0.096 Sum_probs=152.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+||||||||++|++++++|+++|++ |.+++|+.+.. ...+++.+.+|+.+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~---V~~~~R~~~~~-------------------------~~~~~~~~~~d~~d~~ 52 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVP---FLVASRSSSSS-------------------------AGPNEKHVKFDWLDED 52 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCc---EEEEeCCCccc-------------------------cCCCCccccccCCCHH
Confidence 4899999999999999999999877 89999986532 1134667789999876
Q ss_pred CCCCHHHHHHHh------cc-ccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccc
Q psy6053 184 LAIKESDRQLLA------SE-VDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVL 256 (614)
Q Consensus 184 lGLs~~~~~~l~------~~-vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i 256 (614)
.+..++ ++ +|.|+|+++..... +..+.+++++|++. ++++||++||..+....
T Consensus 53 ------~l~~a~~~~~~~~g~~d~v~~~~~~~~~~----------~~~~~~~i~aa~~~-gv~~~V~~Ss~~~~~~~--- 112 (285)
T TIGR03649 53 ------TWDNPFSSDDGMEPEISAVYLVAPPIPDL----------APPMIKFIDFARSK-GVRRFVLLSASIIEKGG--- 112 (285)
T ss_pred ------HHHHHHhcccCcCCceeEEEEeCCCCCCh----------hHHHHHHHHHHHHc-CCCEEEEeeccccCCCC---
Confidence 788877 56 99999998754311 23456899999994 99999999997542210
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~g 336 (614)
..+...|+.+.+. .|++++++||+.++.....+.
T Consensus 113 ------------------------------------------~~~~~~~~~l~~~--~gi~~tilRp~~f~~~~~~~~-- 146 (285)
T TIGR03649 113 ------------------------------------------PAMGQVHAHLDSL--GGVEYTVLRPTWFMENFSEEF-- 146 (285)
T ss_pred ------------------------------------------chHHHHHHHHHhc--cCCCEEEEeccHHhhhhcccc--
Confidence 0112234444332 289999999998875431110
Q ss_pred ccCCCCchHHHHHHH-hcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 337 WTDNINGPTGLLIGA-GKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 337 w~d~~~g~~~~~~~~-~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
....+ ..|. ...+.++...++|+++|+|+++..++.++.. .+++|+++++ +++|+.|+++.
T Consensus 147 ----------~~~~~~~~~~--~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~----~~~~~~l~g~--~~~s~~eia~~ 208 (285)
T TIGR03649 147 ----------HVEAIRKENK--IYSATGDGKIPFVSADDIARVAYRALTDKVA----PNTDYVVLGP--ELLTYDDVAEI 208 (285)
T ss_pred ----------cccccccCCe--EEecCCCCccCcccHHHHHHHHHHHhcCCCc----CCCeEEeeCC--ccCCHHHHHHH
Confidence 00011 1122 2335678889999999999999998876432 5679999998 89999999999
Q ss_pred HhhhcccccCC
Q psy6053 416 GKSIVTTEVPL 426 (614)
Q Consensus 416 ~~~~~g~~~p~ 426 (614)
+.+.+|++.+.
T Consensus 209 l~~~~g~~v~~ 219 (285)
T TIGR03649 209 LSRVLGRKITH 219 (285)
T ss_pred HHHHhCCceEE
Confidence 99999986554
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=210.21 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=147.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|+++|++ |.+++|..... ...+++++.+|++++
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~---Vi~ldr~~~~~-------------------------~~~~ve~v~~Dl~d~ 52 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHT---VSGIAQHPHDA-------------------------LDPRVDYVCASLRNP 52 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE---EEEEeCChhhc-------------------------ccCCceEEEccCCCH
Confidence 57999999999999999999999876 88999853210 123578999999986
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccCC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYP 262 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~~ 262 (614)
. +.+++.++|+|||+|+.... . ...+|+.|+.+++++|++. ++ ++||+||.++.+
T Consensus 53 ~-------l~~al~~~D~VIHLAa~~~~-~----~~~vNv~Gt~nLleAA~~~-Gv-RiV~~SS~~G~~----------- 107 (699)
T PRK12320 53 V-------LQELAGEADAVIHLAPVDTS-A----PGGVGITGLAHVANAAARA-GA-RLLFVSQAAGRP----------- 107 (699)
T ss_pred H-------HHHHhcCCCEEEEcCccCcc-c----hhhHHHHHHHHHHHHHHHc-CC-eEEEEECCCCCC-----------
Confidence 3 56677899999999986421 1 2258999999999999995 66 699999985311
Q ss_pred CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCC
Q psy6053 263 PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNIN 342 (614)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~ 342 (614)
..|. .+|.++..+ +++++|+|+++|||+...+
T Consensus 108 --------------------------------~~~~----~aE~ll~~~---~~p~~ILR~~nVYGp~~~~--------- 139 (699)
T PRK12320 108 --------------------------------ELYR----QAETLVSTG---WAPSLVIRIAPPVGRQLDW--------- 139 (699)
T ss_pred --------------------------------cccc----HHHHHHHhc---CCCEEEEeCceecCCCCcc---------
Confidence 1122 367776654 6899999999999985421
Q ss_pred chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhh
Q psy6053 343 GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 343 g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
....++....+... ......++||||++++++.++... ..++||++++ +.+|+.|+.+.+...
T Consensus 140 ~~~r~I~~~l~~~~------~~~pI~vIyVdDvv~alv~al~~~------~~GiyNIG~~--~~~Si~el~~~i~~~ 202 (699)
T PRK12320 140 MVCRTVATLLRSKV------SARPIRVLHLDDLVRFLVLALNTD------RNGVVDLATP--DTTNVVTAWRLLRSV 202 (699)
T ss_pred cHhHHHHHHHHHHH------cCCceEEEEHHHHHHHHHHHHhCC------CCCEEEEeCC--CeeEHHHHHHHHHHh
Confidence 11122332222111 122344699999999999988642 2349999999 889999999988776
|
|
| >cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=165.06 Aligned_cols=91 Identities=32% Similarity=0.705 Sum_probs=88.9
Q ss_pred HhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcceEEEechhHHHHHHHcChhccccccCcCCCCCHHHHHH
Q psy6053 451 FHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERIEYKIDGEDLDIKKYFQ 530 (614)
Q Consensus 451 ~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~D~~~f~~d~~~~dw~~Y~~ 530 (614)
.|.+|+.++|.+..+.|++|.+.++++++.++.++++||+.++|.|+++|+++|++.|+++||+.|+||++++||++|++
T Consensus 2 ~~~lpa~~~d~~~~l~g~~~~~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~Y~~ 81 (92)
T cd09071 2 LHLLPAYLLDLLLRLLGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFE 81 (92)
T ss_pred cccchHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy6053 531 DCIMATRIFIL 541 (614)
Q Consensus 531 ~~~~G~r~y~~ 541 (614)
+|+.|+|+|++
T Consensus 82 ~~~~G~r~yll 92 (92)
T cd09071 82 NYIPGLRKYLL 92 (92)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=207.33 Aligned_cols=215 Identities=15% Similarity=0.105 Sum_probs=149.4
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
..|+|||||||||||++|++.|.+.|++ |. +..+|++
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~---v~----------------------------------------~~~~~l~ 415 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIA---YE----------------------------------------YGKGRLE 415 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCe---EE----------------------------------------eeccccc
Confidence 3578999999999999999999998866 31 0113344
Q ss_pred CCCCCCCHHHHHHHhc--cccEEEEcccccC---h---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccC
Q psy6053 181 ADELAIKESDRQLLAS--EVDIMIHGAATIR---F---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQ 252 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~---~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~ 252 (614)
+++ .+...++ ++|+||||||... . ......++++|+.||.+++++|++. +++ ++|+||.++++.
T Consensus 416 d~~------~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g~~-~v~~Ss~~v~~~ 487 (668)
T PLN02260 416 DRS------SLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-GLL-MMNFATGCIFEY 487 (668)
T ss_pred cHH------HHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-CCe-EEEEcccceecC
Confidence 432 3444444 6899999999763 2 2345678899999999999999995 775 678888876542
Q ss_pred C--------cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecc
Q psy6053 253 E--------KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPS 324 (614)
Q Consensus 253 ~--------~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~ 324 (614)
. .++.|+..+.| ..|.|+.||..+|+++..+. +..++|+.
T Consensus 488 ~~~~~~~~~~p~~E~~~~~~----------------------------~~~~Yg~sK~~~E~~~~~~~----~~~~~r~~ 535 (668)
T PLN02260 488 DAKHPEGSGIGFKEEDKPNF----------------------------TGSFYSKTKAMVEELLREYD----NVCTLRVR 535 (668)
T ss_pred CcccccccCCCCCcCCCCCC----------------------------CCChhhHHHHHHHHHHHhhh----hheEEEEE
Confidence 1 13444322111 12789999999999998873 46788888
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCc
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQE 404 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~ 404 (614)
.+||... .++..++..+.++...... ..+...+|+++.+++.++.. . .+++||++++
T Consensus 536 ~~~~~~~----------~~~~nfv~~~~~~~~~~~v-----p~~~~~~~~~~~~~~~l~~~-~-----~~giyni~~~-- 592 (668)
T PLN02260 536 MPISSDL----------SNPRNFITKISRYNKVVNI-----PNSMTVLDELLPISIEMAKR-N-----LRGIWNFTNP-- 592 (668)
T ss_pred EecccCC----------CCccHHHHHHhccceeecc-----CCCceehhhHHHHHHHHHHh-C-----CCceEEecCC--
Confidence 8886432 1223455555443321111 12467788899888877753 1 4579999998
Q ss_pred ccccHHHHHHHHhhhcc
Q psy6053 405 WQVSWQEIIDIGKSIVT 421 (614)
Q Consensus 405 ~~it~~e~~~~~~~~~g 421 (614)
..+||.|+++.+.+.++
T Consensus 593 ~~~s~~e~a~~i~~~~~ 609 (668)
T PLN02260 593 GVVSHNEILEMYKDYID 609 (668)
T ss_pred CcCcHHHHHHHHHHhcC
Confidence 78999999999998754
|
|
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=168.23 Aligned_cols=291 Identities=14% Similarity=0.127 Sum_probs=205.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|||||+||.+|++|.+.+..+|++-.+ .++.-++ .+|+++.
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~-wvf~~sk------------------------------------d~DLt~~ 44 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDEN-WVFIGSK------------------------------------DADLTNL 44 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcc-eEEeccc------------------------------------cccccch
Confidence 78999999999999999999998874111 1222211 3577764
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccCh---hHH-HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRF---DEA-LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~---~~~-~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
. +.+.+++ +...|||+||.|.- +.. .-++++.|+.-.-|+|..|-+ .++++++++-|...+++..
T Consensus 45 a------~t~~lF~~ekPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e-~gv~K~vsclStCIfPdkt~y 117 (315)
T KOG1431|consen 45 A------DTRALFESEKPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHE-HGVKKVVSCLSTCIFPDKTSY 117 (315)
T ss_pred H------HHHHHHhccCCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHH-hchhhhhhhcceeecCCCCCC
Confidence 4 6777776 57899999998752 111 236788999999999999999 5999999988887777654
Q ss_pred ccccccC-CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 255 VLYEKPY-PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 ~i~E~~~-~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
+|+|... .-|..| .--+|++.|.++.-.-+.|.. +|-..+.+-|.+|||+.+.
T Consensus 118 PIdEtmvh~gpphp-------------------------sN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDN 172 (315)
T KOG1431|consen 118 PIDETMVHNGPPHP-------------------------SNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDN 172 (315)
T ss_pred CCCHHHhccCCCCC-------------------------CchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCC
Confidence 7777622 111111 013799999888877777776 8999999999999999763
Q ss_pred CCccccCCCCchHHHHHHH----hcCc-eeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccc
Q psy6053 333 PLPGWTDNINGPTGLLIGA----GKGV-IRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQV 407 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~----~~g~-~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~i 407 (614)
-.|. +-.-.-+++..+ ..|. ...++|.|.-.+.|+++||+|++++..+..-. ..+-.+++.+..+.+
T Consensus 173 fnpe---~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y~-----~vEpiils~ge~~EV 244 (315)
T KOG1431|consen 173 FNPE---NSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREYE-----GVEPIILSVGESDEV 244 (315)
T ss_pred CCcc---cccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhhc-----CccceEeccCcccee
Confidence 2111 111122344432 2343 45678999999999999999999999987654 445567888765689
Q ss_pred cHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHH-HHHhCCChHHHHHHHHHHHHHhhh
Q psy6053 408 SWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAI-IFLSGNKPCLVKIQDRINKGFEVF 486 (614)
Q Consensus 408 t~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~-~~~~G~~P~~~~l~~ki~~~~~~~ 486 (614)
|++|+.+.+.+..+.+-.+....-.|.+. |...++.. ++-++|.|++..+.+.+.+ .+
T Consensus 245 tI~e~aeaV~ea~~F~G~l~~DttK~DGq------------------~kKtasnsKL~sl~pd~~ft~l~~ai~~---t~ 303 (315)
T KOG1431|consen 245 TIREAAEAVVEAVDFTGKLVWDTTKSDGQ------------------FKKTASNSKLRSLLPDFKFTPLEQAISE---TV 303 (315)
T ss_pred EHHHHHHHHHHHhCCCceEEeeccCCCCC------------------cccccchHHHHHhCCCcccChHHHHHHH---HH
Confidence 99999999999988765544333344443 22223332 5678899999888888876 77
Q ss_pred hhhhc
Q psy6053 487 EYYAN 491 (614)
Q Consensus 487 ~~f~~ 491 (614)
+||..
T Consensus 304 ~Wy~~ 308 (315)
T KOG1431|consen 304 QWYLD 308 (315)
T ss_pred HHHHH
Confidence 78764
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=179.37 Aligned_cols=236 Identities=17% Similarity=0.169 Sum_probs=159.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||||++++++|++.|.. |+++.|+. ++++++.+ . ...++.++.+|+++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~---v~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D~~~ 59 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDR---VAATVRRP------DALDDLKA---------R----YGDRLWVLQLDVTD 59 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------h----ccCceEEEEccCCC
Confidence 378999999999999999999999875 88888863 22322211 1 22468899999999
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V~ 243 (614)
++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+ ++ .+.+++|+
T Consensus 60 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~~~iv~ 132 (276)
T PRK06482 60 SA------AVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRR-QGGGRIVQ 132 (276)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCEEEE
Confidence 76 5555443 58999999997542 2445678899999999999997 44 36679999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... | ..+.|+.||+..|.+++.+.. .|++++
T Consensus 133 ~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~ 174 (276)
T PRK06482 133 VSSEGGQIAY----------P----------------------------GFSLYHATKWGIEGFVEAVAQEVAPFGIEFT 174 (276)
T ss_pred EcCcccccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhhccCcEEE
Confidence 9997542110 0 016899999999999887664 489999
Q ss_pred Eeeccee---ecccCCCCccccCCC-CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 320 MLRPSII---IPVWREPLPGWTDNI-NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 320 IvRp~~I---~g~~~~p~~gw~d~~-~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++|||.+ +|+.... ..+.... ..+...+.....+ +.... +.+++|++++++.++.... .+.
T Consensus 175 ~v~pg~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~d~~~~~~a~~~~~~~~~-----~~~ 239 (276)
T PRK06482 175 IVEPGPARTNFGAGLDR-GAPLDAYDDTPVGDLRRALAD--------GSFAI-PGDPQKMVQAMIASADQTP-----APR 239 (276)
T ss_pred EEeCCccccCCcccccc-cCCCccccchhhHHHHHHHhh--------ccCCC-CCCHHHHHHHHHHHHcCCC-----CCe
Confidence 9999988 4332111 0000000 0111122221111 11111 3578999999999986442 456
Q ss_pred EEEeccCCcccccHHHHHHHHhhhcc
Q psy6053 396 IVHLTSSQEWQVSWQEIIDIGKSIVT 421 (614)
Q Consensus 396 vyni~~~~~~~it~~e~~~~~~~~~g 421 (614)
.||++++ +..+..|.++.+.+.++
T Consensus 240 ~~~~g~~--~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 240 RLTLGSD--AYASIRAALSERLAALE 263 (276)
T ss_pred EEecChH--HHHHHHHHHHHHHHHHH
Confidence 7999998 77788887777666644
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-19 Score=171.85 Aligned_cols=262 Identities=18% Similarity=0.156 Sum_probs=192.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+.||||-||+-|++|.+.||+.|++ |+.+.|..+.-+. .|+ .+.+.+. . ...++..+.||++|
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~---VhGi~Rrss~~n~-~ri-~L~~~~~---------~-~~~~l~l~~gDLtD 66 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYE---VHGIKRRSSSFNT-PRI-HLYEDPH---------L-NDPRLHLHYGDLTD 66 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcE---EEEEeeccccCCc-ccc-eeccccc---------c-CCceeEEEeccccc
Confidence 588999999999999999999999998 9999998654332 232 2222111 1 33568999999999
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEccccc----ChhHHHHHHHHHhHHHHHHHHHHHHHcCC-CceEEEEeCc--eeccC
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATI----RFDEALKKAVLLNTRGTKMMLSLAKEMKH-LELFVHISTA--YCHLQ 252 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v----~~~~~~~~~~~~Nv~gt~~ll~la~~~~~-~k~~V~vST~--~~~~~ 252 (614)
.. .+.++++ +.|-|+|+||.. +|+.|. ...+++-.||.+||++.+.... -.+|...||. |+...
T Consensus 67 ~~------~l~r~l~~v~PdEIYNLaAQS~V~vSFe~P~-~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~ 139 (345)
T COG1089 67 SS------NLLRILEEVQPDEIYNLAAQSHVGVSFEQPE-YTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQ 139 (345)
T ss_pred hH------HHHHHHHhcCchhheeccccccccccccCcc-eeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcc
Confidence 76 6777776 569999999974 455553 3458899999999999998643 3589999998 44444
Q ss_pred CcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 253 EKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 253 ~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
..+..|..+-.|. ++|+.+|.-|-.+...+.+ +|+-+|.=... ..+
T Consensus 140 ~~pq~E~TPFyPr-----------------------------SPYAvAKlYa~W~tvNYResYgl~AcnGILF----NHE 186 (345)
T COG1089 140 EIPQKETTPFYPR-----------------------------SPYAVAKLYAYWITVNYRESYGLFACNGILF----NHE 186 (345)
T ss_pred cCccccCCCCCCC-----------------------------CHHHHHHHHHHheeeehHhhcCceeecceee----cCC
Confidence 4466666322222 8999999999999999988 78776653333 345
Q ss_pred CCCccccCCCCchHHHHHHHhcCcee-eEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIR-TMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~-~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
+|..|-.--....+.-+..+..|... ...|+-+..+||-+..|-++++...+.+. .+..|+++++ ...|.+
T Consensus 187 SP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~------~PddyViATg--~t~sVr 258 (345)
T COG1089 187 SPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQE------EPDDYVIATG--ETHSVR 258 (345)
T ss_pred CCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHHHHHHccC------CCCceEEecC--ceeeHH
Confidence 55544221112233445556667654 34689999999999999999998888664 4679999999 889999
Q ss_pred HHHHHHhhhcccccCC
Q psy6053 411 EIIDIGKSIVTTEVPL 426 (614)
Q Consensus 411 e~~~~~~~~~g~~~p~ 426 (614)
|+++...+.+|.+..+
T Consensus 259 efv~~Af~~~g~~l~w 274 (345)
T COG1089 259 EFVELAFEMVGIDLEW 274 (345)
T ss_pred HHHHHHHHHcCceEEE
Confidence 9999999998976543
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=170.59 Aligned_cols=182 Identities=21% Similarity=0.232 Sum_probs=140.3
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|+|+||||++|+.++++|+++|++ |++++|++... . ...+++++.||+.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~---V~~~~R~~~~~--~----------------------~~~~~~~~~~d~~d~~- 52 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHE---VTALVRSPSKA--E----------------------DSPGVEIIQGDLFDPD- 52 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSE---EEEEESSGGGH--H----------------------HCTTEEEEESCTTCHH-
T ss_pred eEEECCCChHHHHHHHHHHHCCCE---EEEEecCchhc--c----------------------cccccccceeeehhhh-
Confidence 799999999999999999999865 99999986431 1 1267999999999875
Q ss_pred CCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccc-ccccCCC
Q psy6053 185 AIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVL-YEKPYPP 263 (614)
Q Consensus 185 GLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i-~E~~~~~ 263 (614)
.+...++++|+|||+++.... +...+++++++|++. +++++|++||+.++...... ...
T Consensus 53 -----~~~~al~~~d~vi~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~~~~~~~~~~~~~~---- 112 (183)
T PF13460_consen 53 -----SVKAALKGADAVIHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSAGVYRDPPGLFSDE---- 112 (183)
T ss_dssp -----HHHHHHTTSSEEEECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEETTGTTTCTSEEEGG----
T ss_pred -----hhhhhhhhcchhhhhhhhhcc----------ccccccccccccccc-ccccceeeeccccCCCCCcccccc----
Confidence 899999999999999976543 177889999999995 89999999999876643311 000
Q ss_pred CCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCCc
Q psy6053 264 PTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNING 343 (614)
Q Consensus 264 p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~g 343 (614)
..+.+..|...|..+|+.+.+. +++++++||+.++|...++
T Consensus 113 --------------------------~~~~~~~~~~~~~~~e~~~~~~---~~~~~ivrp~~~~~~~~~~---------- 153 (183)
T PF13460_consen 113 --------------------------DKPIFPEYARDKREAEEALRES---GLNWTIVRPGWIYGNPSRS---------- 153 (183)
T ss_dssp --------------------------TCGGGHHHHHHHHHHHHHHHHS---TSEEEEEEESEEEBTTSSS----------
T ss_pred --------------------------cccchhhhHHHHHHHHHHHHhc---CCCEEEEECcEeEeCCCcc----------
Confidence 0001146889999999999754 8999999999999985421
Q ss_pred hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 344 PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 344 ~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
.......+.....+|+++|+|++++.++.+
T Consensus 154 ------------~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 154 ------------YRLIKEGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp ------------EEEESSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred ------------eeEEeccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 011112455667999999999999998753
|
... |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=176.56 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=156.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+|+|+||||||++|+.+++.|++.|++ |+++.|..+. ..+.. + ...+++++.+|+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~---V~~~~R~~~~------~~~~~------------~--~~~~~~~~~~Dl 71 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFA---VKAGVRDVDK------AKTSL------------P--QDPSLQIVRADV 71 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCE---EEEEecCHHH------HHHhc------------c--cCCceEEEEeeC
Confidence 44689999999999999999999999876 8899997532 11110 0 123688999999
Q ss_pred CCCCCCCCHHHHHHHh-ccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccc
Q psy6053 180 EADELAIKESDRQLLA-SEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYE 258 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E 258 (614)
+++. +++...+ .++|+|||+++......+ ....++|+.|+.++++++++ .+++++|++||..+++....
T Consensus 72 ~d~~-----~~l~~~~~~~~d~vi~~~g~~~~~~~-~~~~~~n~~~~~~ll~a~~~-~~~~~iV~iSS~~v~g~~~~--- 141 (251)
T PLN00141 72 TEGS-----DKLVEAIGDDSDAVICATGFRRSFDP-FAPWKVDNFGTVNLVEACRK-AGVTRFILVSSILVNGAAMG--- 141 (251)
T ss_pred CCCH-----HHHHHHhhcCCCEEEECCCCCcCCCC-CCceeeehHHHHHHHHHHHH-cCCCEEEEEccccccCCCcc---
Confidence 9742 2555556 689999999886421111 12347899999999999998 58899999999987653211
Q ss_pred ccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcccc
Q psy6053 259 KPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~ 338 (614)
..+.++..+. .+ ...|..+|..+|+++++. |++++++|||.+++....
T Consensus 142 ~~~~~~~~~~-----------------~~------~~~~~~~k~~~e~~l~~~---gi~~~iirpg~~~~~~~~------ 189 (251)
T PLN00141 142 QILNPAYIFL-----------------NL------FGLTLVAKLQAEKYIRKS---GINYTIVRPGGLTNDPPT------ 189 (251)
T ss_pred cccCcchhHH-----------------HH------HHHHHHHHHHHHHHHHhc---CCcEEEEECCCccCCCCC------
Confidence 0000000000 00 023456788899887754 899999999998865311
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc-ccHHHHHHHHh
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ-VSWQEIIDIGK 417 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~-it~~e~~~~~~ 417 (614)
|.... .........+++.+|+|+++..++..+.. ...++.+.+..+++ .+++++...+.
T Consensus 190 ---------------~~~~~-~~~~~~~~~~i~~~dvA~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (251)
T PLN00141 190 ---------------GNIVM-EPEDTLYEGSISRDQVAEVAVEALLCPES----SYKVVEIVARADAPKRSYKDLFASIK 249 (251)
T ss_pred ---------------ceEEE-CCCCccccCcccHHHHHHHHHHHhcChhh----cCcEEEEecCCCCCchhHHHHHHHhh
Confidence 11110 11111123468999999999999876553 46778887644453 78999888765
Q ss_pred h
Q psy6053 418 S 418 (614)
Q Consensus 418 ~ 418 (614)
+
T Consensus 250 ~ 250 (251)
T PLN00141 250 Q 250 (251)
T ss_pred c
Confidence 4
|
|
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=171.67 Aligned_cols=236 Identities=16% Similarity=0.149 Sum_probs=178.2
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..++|-.+-|.|||||+|.+++.+|.+.|.+ |++--|...... .+++- -. ....+.+..-
T Consensus 57 sS~sGiVaTVFGAtGFlGryvvnklak~GSQ---viiPyR~d~~~~--r~lkv--------------mG-dLGQvl~~~f 116 (391)
T KOG2865|consen 57 SSVSGIVATVFGATGFLGRYVVNKLAKMGSQ---VIIPYRGDEYDP--RHLKV--------------MG-DLGQVLFMKF 116 (391)
T ss_pred ccccceEEEEecccccccHHHHHHHhhcCCe---EEEeccCCccch--hheee--------------cc-cccceeeecc
Confidence 4456777889999999999999999999977 777777654321 11110 01 4467888899
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccc
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLY 257 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~ 257 (614)
|+.|++ .+....+..++|||+-|.---..+ -++.++|+.+.+++.+.|+++ ++.+|||+|+..++-.
T Consensus 117 d~~Ded------SIr~vvk~sNVVINLIGrd~eTkn-f~f~Dvn~~~aerlAricke~-GVerfIhvS~Lganv~----- 183 (391)
T KOG2865|consen 117 DLRDED------SIRAVVKHSNVVINLIGRDYETKN-FSFEDVNVHIAERLARICKEA-GVERFIHVSCLGANVK----- 183 (391)
T ss_pred CCCCHH------HHHHHHHhCcEEEEeeccccccCC-cccccccchHHHHHHHHHHhh-Chhheeehhhcccccc-----
Confidence 999876 899999999999999885211111 246689999999999999995 9999999999874311
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGW 337 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw 337 (614)
.|+-|-.||+++|..++++.. ..+|+||+-|||..+.
T Consensus 184 -----------------------------------s~Sr~LrsK~~gE~aVrdafP---eAtIirPa~iyG~eDr----- 220 (391)
T KOG2865|consen 184 -----------------------------------SPSRMLRSKAAGEEAVRDAFP---EATIIRPADIYGTEDR----- 220 (391)
T ss_pred -----------------------------------ChHHHHHhhhhhHHHHHhhCC---cceeechhhhcccchh-----
Confidence 136789999999999999843 6899999999998652
Q ss_pred cCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHh
Q psy6053 338 TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGK 417 (614)
Q Consensus 338 ~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~ 417 (614)
+-.+...+..- -|.++......+..-..|+|-|||.+|+.|+.++.. .+++|..++| ...+..|+++.+.
T Consensus 221 ---fln~ya~~~rk-~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s----~Gktye~vGP--~~yql~eLvd~my 290 (391)
T KOG2865|consen 221 ---FLNYYASFWRK-FGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDS----MGKTYEFVGP--DRYQLSELVDIMY 290 (391)
T ss_pred ---HHHHHHHHHHh-cCceeeecCCcceeeccEEEehHHHHHHHhccCccc----cCceeeecCC--chhhHHHHHHHHH
Confidence 22222222221 233333223334666789999999999999988864 8999999999 8899999999998
Q ss_pred hh
Q psy6053 418 SI 419 (614)
Q Consensus 418 ~~ 419 (614)
+.
T Consensus 291 ~~ 292 (391)
T KOG2865|consen 291 DM 292 (391)
T ss_pred HH
Confidence 87
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=171.76 Aligned_cols=229 Identities=15% Similarity=0.177 Sum_probs=153.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|++|||||||+||.+++++|++.|++ |+++.|+... .+++.+.+ +. ...++.++.+|+
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~---v~~~~r~~~~---~~~~~~~~--------~~-----~~~~~~~~~~Dl 65 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAA---VAIADLNQDG---ANAVADEI--------NK-----AGGKAIGVAMDV 65 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCe---EEEEeCChHH---HHHHHHHH--------Hh-----cCceEEEEECCC
Confidence 45789999999999999999999999886 7788886532 12221111 10 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHH----HHHHHHHH-HHcCCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRG----TKMMLSLA-KEMKHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~g----t~~ll~la-~~~~~~k~ 240 (614)
++++ .++.+++ .+|+|||+||.... .+.++..+++|+.| ++++++.+ +. .+.++
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~~~~ 138 (262)
T PRK13394 66 TNED------AVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKD-DRGGV 138 (262)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-cCCcE
Confidence 9876 5555544 48999999997532 24456778899999 77777777 55 46789
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||.++.... | ..+.|+.||...+.+++.... .++
T Consensus 139 iv~~ss~~~~~~~----------~----------------------------~~~~y~~sk~a~~~~~~~la~~~~~~~i 180 (262)
T PRK13394 139 VIYMGSVHSHEAS----------P----------------------------LKSAYVTAKHGLLGLARVLAKEGAKHNV 180 (262)
T ss_pred EEEEcchhhcCCC----------C----------------------------CCcccHHHHHHHHHHHHHHHHHhhhcCe
Confidence 9999997543211 0 015799999999888877654 489
Q ss_pred CEEEeecceeecccCC-CCccccCCC-CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 317 PCLMLRPSIIIPVWRE-PLPGWTDNI-NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~-p~~gw~d~~-~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
+++++|||.++++... ..+...... .......... +..+....++++++|++++++.++..... ...+
T Consensus 181 ~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~dva~a~~~l~~~~~~--~~~g 250 (262)
T PRK13394 181 RSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKV--------MLGKTVDGVFTTVEDVAQTVLFLSSFPSA--ALTG 250 (262)
T ss_pred EEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHH--------HhcCCCCCCCCCHHHHHHHHHHHcCcccc--CCcC
Confidence 9999999999886421 111000000 0001111111 12234457899999999999988865432 1257
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.+|++.++
T Consensus 251 ~~~~~~~g 258 (262)
T PRK13394 251 QSFVVSHG 258 (262)
T ss_pred CEEeeCCc
Confidence 78888876
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=167.78 Aligned_cols=221 Identities=10% Similarity=0.046 Sum_probs=144.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+++|||||||||||++++++|++.|++ |+++.|.... ..+.+.+. +... ....+.++.+|++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~---v~~~~r~~~~--~~~~~~~~--------~~~~----~~~~~~~~~~Dl~ 67 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYR---VAIHYHRSAA--EADALAAE--------LNAL----RPGSAAALQADLL 67 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEcCCCHH--HHHHHHHH--------HHhh----cCCceEEEEcCCC
Confidence 4689999999999999999999999876 8888886422 11111111 1100 1235788999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~v 244 (614)
+.+ .+..+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... ..-..++++
T Consensus 68 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~ 141 (249)
T PRK09135 68 DPD------ALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNI 141 (249)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEE
Confidence 865 5665554 4799999999532 12456778999999999999999652 122345555
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEe
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLML 321 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~Iv 321 (614)
|+.... . ..+| .+.|+.||+.+|.+++.+.. .+++++++
T Consensus 142 ~~~~~~--------~-~~~~-----------------------------~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v 183 (249)
T PRK09135 142 TDIHAE--------R-PLKG-----------------------------YPVYCAAKAALEMLTRSLALELAPEVRVNAV 183 (249)
T ss_pred eChhhc--------C-CCCC-----------------------------chhHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 543221 0 0111 16899999999999988765 36999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
|||.++|+...+ .+ +.........+.. ..-+.+++|+|+++..++.... ...+.+||+++
T Consensus 184 ~pg~~~~~~~~~------~~--~~~~~~~~~~~~~---------~~~~~~~~d~a~~~~~~~~~~~---~~~g~~~~i~~ 243 (249)
T PRK09135 184 APGAILWPEDGN------SF--DEEARQAILARTP---------LKRIGTPEDIAEAVRFLLADAS---FITGQILAVDG 243 (249)
T ss_pred EeccccCccccc------cC--CHHHHHHHHhcCC---------cCCCcCHHHHHHHHHHHcCccc---cccCcEEEECC
Confidence 999999986431 11 1111111112111 0112358999999966664322 13688999999
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
+
T Consensus 244 g 244 (249)
T PRK09135 244 G 244 (249)
T ss_pred C
Confidence 8
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=169.47 Aligned_cols=237 Identities=14% Similarity=0.121 Sum_probs=157.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+||||||||+||++++++|+++|++ |+++.|+... ++++.+ . ...++..+.+|++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~---V~~~~r~~~~------~~~~~~---------~----~~~~~~~~~~D~~ 59 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDR---VVATARDTAT------LADLAE---------K----YGDRLLPLALDVT 59 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEECCHHH------HHHHHH---------h----ccCCeeEEEccCC
Confidence 4689999999999999999999999865 8888886422 222111 0 2246788899999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFV 242 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V 242 (614)
+++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+..+++.+ ++ .+.+++|
T Consensus 60 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv 132 (275)
T PRK08263 60 DRA------AVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLRE-QRSGHII 132 (275)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCEEE
Confidence 865 5544443 57999999997543 2567788999999998887775 44 3567999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..|.+.+.... .|+++
T Consensus 133 ~vsS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v 174 (275)
T PRK08263 133 QISSIGGISAFP--------------------------------------MSGIYHASKWALEGMSEALAQEVAEFGIKV 174 (275)
T ss_pred EEcChhhcCCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 999986543211 015799999998888866644 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccc-eeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADF-LPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~-vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+++|||.+..+...+.....+.......+...... ......+ +.++|+|++++.++..... ....+
T Consensus 175 ~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~dva~~~~~l~~~~~~----~~~~~ 241 (275)
T PRK08263 175 TLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAE---------QWSERSVDGDPEAAAEALLKLVDAENP----PLRLF 241 (275)
T ss_pred EEEecCCccCCccccccccCCCchhhhhHHHHHHH---------HHHhccCCCCHHHHHHHHHHHHcCCCC----CeEEE
Confidence 99999988665432110000000000011111111 1111234 7899999999999876542 34444
Q ss_pred EeccCCcccccHHHHHHHHhhh
Q psy6053 398 HLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 398 ni~~~~~~~it~~e~~~~~~~~ 419 (614)
+.+.+ .++++.++.+.+.++
T Consensus 242 ~~~~~--~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 242 LGSGV--LDLAKADYERRLATW 261 (275)
T ss_pred eCchH--HHHHHHHHHHHHHHH
Confidence 44444 678999999888876
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=179.59 Aligned_cols=248 Identities=11% Similarity=0.073 Sum_probs=161.0
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.+.++|++||||||||+||++++++|++.|++ |++++|.... .+++.+.+... .+...... ...++.++.
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~---Vval~Rn~ek---l~~l~~~l~~~---~L~~~Ga~-~~~~v~iV~ 144 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKLGFR---VRAGVRSAQR---AESLVQSVKQM---KLDVEGTQ-PVEKLEIVE 144 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCe---EEEEeCCHHH---HHHHHHHhhhh---cccccccc-ccCceEEEE
Confidence 45567899999999999999999999999876 8889997532 12222111000 00000000 124689999
Q ss_pred CCCCCCCCCCCHHHHHHHhccccEEEEcccccChh-HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcc
Q psy6053 177 GDAEADELAIKESDRQLLASEVDIMIHGAATIRFD-EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKV 255 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~ 255 (614)
||+++.+ ++..++.++|+|||+||..... ..+...+++|+.|+.+++++|++. ++++||++||.++....
T Consensus 145 gDLtD~e------sI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-gVgRIV~VSSiga~~~g-- 215 (576)
T PLN03209 145 CDLEKPD------QIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-KVNHFILVTSLGTNKVG-- 215 (576)
T ss_pred ecCCCHH------HHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-CCCEEEEEccchhcccC--
Confidence 9999865 7888889999999999875321 234556789999999999999994 88999999998653111
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
..+..+ . ...+|...|..+|+.+.+. |++++++|||.+.++..+
T Consensus 216 ~p~~~~----~--------------------------sk~~~~~~KraaE~~L~~s---GIrvTIVRPG~L~tp~d~--- 259 (576)
T PLN03209 216 FPAAIL----N--------------------------LFWGVLCWKRKAEEALIAS---GLPYTIVRPGGMERPTDA--- 259 (576)
T ss_pred ccccch----h--------------------------hHHHHHHHHHHHHHHHHHc---CCCEEEEECCeecCCccc---
Confidence 001000 0 0146778899999988765 999999999999765321
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc-ccHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ-VSWQEIID 414 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~-it~~e~~~ 414 (614)
+.. .+.......+ ....-.+.-+|||++++.++.+... ..+.+|.+.++...+ ..+.+.++
T Consensus 260 -~~~-------------t~~v~~~~~d-~~~gr~isreDVA~vVvfLasd~~a---s~~kvvevi~~~~~p~~~~~~~~~ 321 (576)
T PLN03209 260 -YKE-------------THNLTLSEED-TLFGGQVSNLQVAELMACMAKNRRL---SYCKVVEVIAETTAPLTPMEELLA 321 (576)
T ss_pred -ccc-------------ccceeecccc-ccCCCccCHHHHHHHHHHHHcCchh---ccceEEEEEeCCCCCCCCHHHHHH
Confidence 000 0111110111 1111247788999999998875542 267899998873221 34455554
Q ss_pred HHh
Q psy6053 415 IGK 417 (614)
Q Consensus 415 ~~~ 417 (614)
.+-
T Consensus 322 ~ip 324 (576)
T PLN03209 322 KIP 324 (576)
T ss_pred hcc
Confidence 443
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=164.08 Aligned_cols=222 Identities=12% Similarity=0.076 Sum_probs=153.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||||++|.+++++|+++|++ |+++.|+... ..+..+++ +. ...++.++.+|+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~---V~~~~r~~~~--~~~~~~~l---------~~-----~~~~~~~~~~Dl 64 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAE---VIVVDICGDD--AAATAELV---------EA-----AGGKARARQVDV 64 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCE---EEEEeCCHHH--HHHHHHHH---------Hh-----cCCeEEEEECCC
Confidence 45789999999999999999999999875 8999997421 11111111 11 224588999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH---cCCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE---MKHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~---~~~~k~~V 242 (614)
++++ +++.+++ .+|+|||+|+.... .+.+...+++|+.++.++++.+.. ..+.++||
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii 138 (251)
T PRK12826 65 RDRA------ALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIV 138 (251)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 6666654 68999999987653 245677899999999999988742 13567899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... + + ....|+.+|...|.+++.... .|+++
T Consensus 139 ~~ss~~~~~~~----~-----~----------------------------~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~ 181 (251)
T PRK12826 139 LTSSVAGPRVG----Y-----P----------------------------GLAHYAASKAGLVGFTRALALELAARNITV 181 (251)
T ss_pred EEechHhhccC----C-----C----------------------------CccHHHHHHHHHHHHHHHHHHHHHHcCeEE
Confidence 99998653100 0 0 014799999999999887654 48999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+++|||.++|+...+.. +..+......+. + ...+++++|+|+++..++..... ...+++|+
T Consensus 182 ~~i~pg~~~~~~~~~~~--------~~~~~~~~~~~~----~-----~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~ 242 (251)
T PRK12826 182 NSVHPGGVDTPMAGNLG--------DAQWAEAIAAAI----P-----LGRLGEPEDIAAAVLFLASDEAR--YITGQTLP 242 (251)
T ss_pred EEEeeCCCCcchhhhcC--------chHHHHHHHhcC----C-----CCCCcCHHHHHHHHHHHhCcccc--CcCCcEEE
Confidence 99999999887543211 111111111110 0 11478999999999887744321 12578999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 243 ~~~g 246 (251)
T PRK12826 243 VDGG 246 (251)
T ss_pred ECCC
Confidence 9876
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=165.88 Aligned_cols=226 Identities=14% Similarity=0.161 Sum_probs=150.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+||||||||+||++++++|++.|++ |+++.|+... .+++.+.++. ...++.++.+|+++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~---v~~~~r~~~~---~~~~~~~~~~-------------~~~~~~~~~~D~~~ 61 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGAN---VVVNDLGEAG---AEAAAKVATD-------------AGGSVIYLVADVTK 61 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHHHh-------------cCCceEEEECCCCC
Confidence 478999999999999999999999875 8899997422 2222222110 22468899999998
Q ss_pred CCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEEE
Q psy6053 182 DELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V~ 243 (614)
++ ++..++ .++|+|||+|+.... .+.++..++.|+.|+..+++.+ ++ .+.+++|+
T Consensus 62 ~~------~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-~~~~~~v~ 134 (255)
T TIGR01963 62 ED------EIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKK-QGWGRIIN 134 (255)
T ss_pred HH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCeEEEE
Confidence 65 444433 457999999986432 2345677889999988888877 44 36789999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.+|...|.+++.... .+++++
T Consensus 135 ~ss~~~~~~~~--------------------------------------~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~ 176 (255)
T TIGR01963 135 IASAHGLVASP--------------------------------------FKSAYVAAKHGLIGLTKVLALEVAAHGITVN 176 (255)
T ss_pred EcchhhcCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 99975432210 015799999998988876654 489999
Q ss_pred EeecceeecccCCC-Cc-ccc-CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 320 MLRPSIIIPVWREP-LP-GWT-DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 320 IvRp~~I~g~~~~p-~~-gw~-d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++|||.++++.... ++ .+. .+. .....+... ...+....++++++|+|++++.++.+... ...+++
T Consensus 177 ~i~pg~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~d~a~~~~~~~~~~~~--~~~g~~ 245 (255)
T TIGR01963 177 AICPGYVRTPLVEKQIADQAKTRGI-PEEQVIREV--------MLPGQPTKRFVTVDEVAETALFLASDAAA--GITGQA 245 (255)
T ss_pred EEecCccccHHHHHHHHhhhcccCC-CchHHHHHH--------HHccCccccCcCHHHHHHHHHHHcCcccc--CccceE
Confidence 99999998764210 00 000 000 000000000 11233456799999999999998865321 125778
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
|++.++
T Consensus 246 ~~~~~g 251 (255)
T TIGR01963 246 IVLDGG 251 (255)
T ss_pred EEEcCc
Confidence 999876
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=165.31 Aligned_cols=229 Identities=14% Similarity=0.120 Sum_probs=149.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||||++|++++++|+++|++ |+++.|.... .+++.+.+ +. ...++..+.+|+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~---v~~~~r~~~~---~~~~~~~~--------~~-----~~~~~~~~~~Dl 62 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAK---VVIADLNDEA---AAAAAEAL--------QK-----AGGKAIGVAMDV 62 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEeCCHHH---HHHHHHHH--------Hh-----cCCcEEEEEcCC
Confidence 35789999999999999999999999876 8888887532 12221111 10 235688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHH----HHHHHHHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKM----MLSLAKEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~----ll~la~~~~~~k~~ 241 (614)
++++ +++.+++ .+|+|||+|+.... .+.+...+++|+.|+.+ ++..+++ .+.++|
T Consensus 63 ~~~~------~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~i 135 (258)
T PRK12429 63 TDEE------AINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKA-QGGGRI 135 (258)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHh-cCCeEE
Confidence 9876 6655554 58999999986432 23456678899999554 4455555 467899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ..+.|+.+|+..+.+.+.... .++.
T Consensus 136 v~iss~~~~~~~~--------------------------------------~~~~y~~~k~a~~~~~~~l~~~~~~~~i~ 177 (258)
T PRK12429 136 INMASVHGLVGSA--------------------------------------GKAAYVSAKHGLIGLTKVVALEGATHGVT 177 (258)
T ss_pred EEEcchhhccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986532211 016799999988888776544 5899
Q ss_pred EEEeecceeecccCCCC-ccccCCCC-chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 318 CLMLRPSIIIPVWREPL-PGWTDNIN-GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~-~gw~d~~~-g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+.++|||.+.++...+. +.-..... ......... +.......++++++|+|+++..++..... ...++
T Consensus 178 v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~ 247 (258)
T PRK12429 178 VNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDV--------LLPLVPQKRFTTVEEIADYALFLASFAAK--GVTGQ 247 (258)
T ss_pred EEEEecCCCcchhhhhhhhhhccccCCChHHHHHHH--------HhccCCccccCCHHHHHHHHHHHcCcccc--CccCC
Confidence 99999999987643210 00000000 000111111 11122335799999999999888765332 12477
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
+|++.++
T Consensus 248 ~~~~~~g 254 (258)
T PRK12429 248 AWVVDGG 254 (258)
T ss_pred eEEeCCC
Confidence 8988866
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-17 Score=161.06 Aligned_cols=220 Identities=15% Similarity=0.153 Sum_probs=152.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||++|++|+++|+++|++ |.++.|+... ..+.+.+.. . . ...++.++.+|+
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~---v~~~~~~~~~--~~~~~~~~~--------~----~-~~~~~~~~~~D~ 65 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGAD---VVVHYRSDEE--AAEELVEAV--------E----A-LGRRAQAVQADV 65 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCe---EEEEeCCCHH--HHHHHHHHH--------H----h-cCCceEEEECCc
Confidence 34689999999999999999999999986 6666666432 112222111 0 1 235688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHH----HcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAK----EMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~ 241 (614)
++++ .+..+++ ++|+|||+||.... .+.+...+++|+.++.++++.+. + .+.+++
T Consensus 66 ~~~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~~ 138 (249)
T PRK12825 66 TDKA------ALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRK-QRGGRI 138 (249)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCEE
Confidence 9876 5665553 57999999996432 34466789999999999998873 4 367899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.+|...|.++..... .+++
T Consensus 139 i~~SS~~~~~~~~--------------------------------------~~~~y~~sK~~~~~~~~~~~~~~~~~~i~ 180 (249)
T PRK12825 139 VNISSVAGLPGWP--------------------------------------GRSNYAAAKAGLVGLTKALARELAEYGIT 180 (249)
T ss_pred EEECccccCCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCeE
Confidence 9999987643210 015799999999988876544 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.++++...+. . +...... .. ......+++++|+++++..++..... ...+++|
T Consensus 181 ~~~i~pg~~~~~~~~~~-------~-~~~~~~~-~~---------~~~~~~~~~~~dva~~~~~~~~~~~~--~~~g~~~ 240 (249)
T PRK12825 181 VNMVAPGDIDTDMKEAT-------I-EEAREAK-DA---------ETPLGRSGTPEDIARAVAFLCSDASD--YITGQVI 240 (249)
T ss_pred EEEEEECCccCCccccc-------c-chhHHhh-hc---------cCCCCCCcCHHHHHHHHHHHhCcccc--CcCCCEE
Confidence 99999999998754321 0 1111110 00 01112288999999999888855321 2368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
+++++
T Consensus 241 ~i~~g 245 (249)
T PRK12825 241 EVTGG 245 (249)
T ss_pred EeCCC
Confidence 99987
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=168.58 Aligned_cols=228 Identities=15% Similarity=0.101 Sum_probs=148.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++++++||||||++|++++++|+++|++ |+++.|+.... +.+.+.. +.. . ...++.++.+|++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~---V~~~~r~~~~~---~~~~~~~--------~~~--~-~~~~~~~~~~D~~ 64 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYL---VIATMRNPEKQ---ENLLSQA--------TQL--N-LQQNIKVQQLDVT 64 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCE---EEEEeCCHHHH---HHHHHHH--------Hhc--C-CCCceeEEecCCC
Confidence 4688999999999999999999999876 88888874321 1111111 000 0 2257899999999
Q ss_pred CCCCCCCHHHHHH---H---hccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEEE
Q psy6053 181 ADELAIKESDRQL---L---ASEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~---l---~~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V~ 243 (614)
+++ +++. + ...+|+|||+|+.... .+.++..+++|+.|+.++++.+ ++ .+..++|+
T Consensus 65 d~~------~~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~ 137 (280)
T PRK06914 65 DQN------SIHNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRK-QKSGKIIN 137 (280)
T ss_pred CHH------HHHHHHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCEEEE
Confidence 976 4433 2 2357999999986431 2455677889999999888876 44 35678999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||...|.+++.... +|++++
T Consensus 138 vsS~~~~~~~~--------------------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~ 179 (280)
T PRK06914 138 ISSISGRVGFP--------------------------------------GLSPYVSSKYALEGFSESLRLELKPFGIDVA 179 (280)
T ss_pred ECcccccCCCC--------------------------------------CCchhHHhHHHHHHHHHHHHHHhhhhCCEEE
Confidence 99975422110 015799999999998887652 589999
Q ss_pred EeecceeecccCCCCccccCC---CCchH-HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 320 MLRPSIIIPVWREPLPGWTDN---INGPT-GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~---~~g~~-~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++|||.+.++...+.....++ ...+. ..+..... .. ......+++++|+|++++.++.+.. ...
T Consensus 180 ~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~dva~~~~~~~~~~~-----~~~ 247 (280)
T PRK06914 180 LIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQK-HI------NSGSDTFGNPIDVANLIVEIAESKR-----PKL 247 (280)
T ss_pred EEecCCcccchhhccccccccccccccchHHHHHHHHH-HH------hhhhhccCCHHHHHHHHHHHHcCCC-----CCc
Confidence 999999977643211110000 00110 11111110 00 0122356889999999999987654 234
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
.|+++++
T Consensus 248 ~~~~~~~ 254 (280)
T PRK06914 248 RYPIGKG 254 (280)
T ss_pred ccccCCc
Confidence 6888776
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=164.28 Aligned_cols=226 Identities=15% Similarity=0.138 Sum_probs=148.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++++|||||||||++++++|++.|++ |+++.|.... ..+++.+.+ +. ...++..+.+|+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~---V~~~~r~~~~--~~~~~~~~l--------~~-----~~~~~~~~~~D~ 65 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAH---VVVNYRQKAP--RANKVVAEI--------EA-----AGGRASAVGADL 65 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCE---EEEEeCCchH--hHHHHHHHH--------Hh-----cCCceEEEEcCC
Confidence 45789999999999999999999999876 7888886421 112222111 10 124578899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCceec
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHISTAYCH 250 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~~~~ 250 (614)
++++ ++..+++ ++|+|||+|+.... .......+++|+.|+.++++.+.+. ....++|++||..+.
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~ 139 (248)
T PRK07806 66 TDEE------SVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAH 139 (248)
T ss_pred CCHH------HHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhh
Confidence 9876 5555543 58999999985321 1223456789999999999999863 223589999996432
Q ss_pred cCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeeccee
Q psy6053 251 LQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSII 326 (614)
Q Consensus 251 ~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I 326 (614)
.... .+. .| ....|+.||+.+|.+++.... .|+++++++|+.+
T Consensus 140 ~~~~--~~~---~~----------------------------~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~ 186 (248)
T PRK07806 140 FIPT--VKT---MP----------------------------EYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMI 186 (248)
T ss_pred cCcc--ccC---Cc----------------------------cccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccc
Confidence 1100 000 00 015799999999999988654 5899999998876
Q ss_pred ecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 327 IPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 327 ~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
-++....+. .. ..+ +... . ......++++++|+|++++.++..... .+++|+++++
T Consensus 187 ~~~~~~~~~---~~-~~~-~~~~----~-------~~~~~~~~~~~~dva~~~~~l~~~~~~----~g~~~~i~~~ 242 (248)
T PRK07806 187 EGTVTATLL---NR-LNP-GAIE----A-------RREAAGKLYTVSEFAAEVARAVTAPVP----SGHIEYVGGA 242 (248)
T ss_pred cCchhhhhh---cc-CCH-HHHH----H-------HHhhhcccCCHHHHHHHHHHHhhcccc----CccEEEecCc
Confidence 543211000 00 000 0000 0 000123689999999999999985432 7889999987
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=158.73 Aligned_cols=218 Identities=16% Similarity=0.168 Sum_probs=150.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+++||||||+||++++++|++.|++ |+++.|.... .+++.+.+ +. ...++..+.+|+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~---vi~~~r~~~~---~~~~~~~~--------~~-----~~~~~~~~~~Dl 64 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGAS---VVVADINAEG---AERVAKQI--------VA-----DGGTAIAVQVDV 64 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHH--------Hh-----cCCcEEEEEcCC
Confidence 46789999999999999999999999876 8888886432 12222211 10 223567889999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCc
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k 239 (614)
+++. +++.+.+ .+|+|||+||... ..+.++..+++|+.|+.++++++... .+.+
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ 138 (250)
T PRK07774 65 SDPD------SAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGG 138 (250)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc
Confidence 9865 5554443 5899999999642 12345667899999999999988753 2346
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..++.. .+.|+.||+..|.+++.... .|
T Consensus 139 ~iv~~sS~~~~~~-----------------------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~ 177 (250)
T PRK07774 139 AIVNQSSTAAWLY-----------------------------------------SNFYGLAKVGLNGLTQQLARELGGMN 177 (250)
T ss_pred EEEEEecccccCC-----------------------------------------ccccHHHHHHHHHHHHHHHHHhCccC
Confidence 8999999875321 16799999999999888765 48
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++++++||.+..+.... ..+..+.....++... .-+..++|+|++++.++..... ...++
T Consensus 178 i~v~~v~pg~~~t~~~~~--------~~~~~~~~~~~~~~~~---------~~~~~~~d~a~~~~~~~~~~~~--~~~g~ 238 (250)
T PRK07774 178 IRVNAIAPGPIDTEATRT--------VTPKEFVADMVKGIPL---------SRMGTPEDLVGMCLFLLSDEAS--WITGQ 238 (250)
T ss_pred eEEEEEecCcccCccccc--------cCCHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhChhhh--CcCCC
Confidence 999999999886554321 1122233233332211 1134689999999888765421 12578
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
+||+.++
T Consensus 239 ~~~v~~g 245 (250)
T PRK07774 239 IFNVDGG 245 (250)
T ss_pred EEEECCC
Confidence 9999887
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=159.70 Aligned_cols=239 Identities=17% Similarity=0.171 Sum_probs=159.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||++|.++++.|++.|++ |+++.|+... ..+..+++ ... . ...++.++.+|+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~---V~~~~r~~~~--~~~~~~~l---------~~~--~-~~~~~~~~~~Dl 67 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAA---VMIVGRNPDK--LAAAAEEI---------EAL--K-GAGAVRYEPADV 67 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCe---EEEEeCCHHH--HHHHHHHH---------Hhc--c-CCCceEEEEcCC
Confidence 56799999999999999999999999876 8888886421 11111111 100 0 124688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +.+.+++ .+|+|||+||.... .+.+...+++|+.|+.++++.+.+. .+..++
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~i 141 (276)
T PRK05875 68 TDED------QVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSF 141 (276)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 5665554 68999999985421 2345677899999999999877542 123589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
+++||..+.... +..+.|+.||+..|.+++.+.. .+++
T Consensus 142 v~~sS~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~ 183 (276)
T PRK05875 142 VGISSIAASNTH--------------------------------------RWFGAYGVTKSAVDHLMKLAADELGPSWVR 183 (276)
T ss_pred EEEechhhcCCC--------------------------------------CCCcchHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999998653211 0126899999999999988765 4799
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.+.++...+. ... .........+ .....++.++|+|+++..++..+.. ...++++
T Consensus 184 v~~i~Pg~v~t~~~~~~------~~~-~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~ 245 (276)
T PRK05875 184 VNSIRPGLIRTDLVAPI------TES-PELSADYRAC---------TPLPRVGEVEDVANLAMFLLSDAAS--WITGQVI 245 (276)
T ss_pred EEEEecCccCCcccccc------ccC-HHHHHHHHcC---------CCCCCCcCHHHHHHHHHHHcCchhc--CcCCCEE
Confidence 99999998865432110 001 1111111111 1112356799999999998866432 1247899
Q ss_pred EeccCCcccc----cHHHHHHHHhhh
Q psy6053 398 HLTSSQEWQV----SWQEIIDIGKSI 419 (614)
Q Consensus 398 ni~~~~~~~i----t~~e~~~~~~~~ 419 (614)
+++++ ..+ +..|+++.+.+.
T Consensus 246 ~~~~g--~~~~~~~~~~~~~~~~~~~ 269 (276)
T PRK05875 246 NVDGG--HMLRRGPDFSSMLEPVFGA 269 (276)
T ss_pred EECCC--eeccCCccHHHHHHHHhhH
Confidence 99887 444 777777776655
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=161.18 Aligned_cols=222 Identities=15% Similarity=0.171 Sum_probs=147.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++++|+||||||+||+++++.|+++|+. |.++ .|.. +++++..+ .+. . ...++.++.+|
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~---v~i~~~r~~------~~~~~~~~-----~~~----~-~~~~~~~~~~D 64 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGAL---VAIHYGRNK------QAADETIR-----EIE----S-NGGKAFLIEAD 64 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEcCCCH------HHHHHHHH-----HHH----h-cCCcEEEEEcC
Confidence 45789999999999999999999999876 5554 4542 12221111 111 0 22468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy6053 179 AEADELAIKESDRQLLAS-------------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KH 237 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~ 237 (614)
+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+
T Consensus 65 ~~d~~------~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 138 (254)
T PRK12746 65 LNSID------GVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRA 138 (254)
T ss_pred cCCHH------HHHHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 99876 5555444 58999999986431 2345667899999999999998762 23
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
..++|++||..+..... ....|+.||+..|.+++....
T Consensus 139 ~~~~v~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~ 180 (254)
T PRK12746 139 EGRVINISSAEVRLGFT--------------------------------------GSIAYGLSKGALNTMTLPLAKHLGE 180 (254)
T ss_pred CCEEEEECCHHhcCCCC--------------------------------------CCcchHhhHHHHHHHHHHHHHHHhh
Confidence 35899999986643210 025799999999998766654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
.++++++++||.+.++...... ....+.....+ ......+++++|+|+++..++..... ...
T Consensus 181 ~~i~v~~v~pg~~~t~~~~~~~--------~~~~~~~~~~~--------~~~~~~~~~~~dva~~~~~l~~~~~~--~~~ 242 (254)
T PRK12746 181 RGITVNTIMPGYTKTDINAKLL--------DDPEIRNFATN--------SSVFGRIGQVEDIADAVAFLASSDSR--WVT 242 (254)
T ss_pred cCcEEEEEEECCccCcchhhhc--------cChhHHHHHHh--------cCCcCCCCCHHHHHHHHHHHcCcccC--CcC
Confidence 5899999999998776432110 00111111111 11123467899999998877654321 125
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
+++|++.++
T Consensus 243 g~~~~i~~~ 251 (254)
T PRK12746 243 GQIIDVSGG 251 (254)
T ss_pred CCEEEeCCC
Confidence 679999765
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-17 Score=162.63 Aligned_cols=226 Identities=13% Similarity=0.142 Sum_probs=151.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+++||||||||+||.++++.|++.|++ |+++.|... +++++.+. ...++..+.+|+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~---v~~~~r~~~------~~~~~~~~-------------~~~~~~~~~~D~ 61 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGAR---VVIADIKPA------RARLAALE-------------IGPAAIAVSLDV 61 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE---EEEEcCCHH------HHHHHHHH-------------hCCceEEEEccC
Confidence 45789999999999999999999999876 888888642 22221110 223578899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 241 (614)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... ..-.++
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i 135 (257)
T PRK07067 62 TRQD------SIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKI 135 (257)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEE
Confidence 9876 5655554 57999999996532 2457778999999999999998642 112479
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | .-..|+.||...+.+++.... +|++
T Consensus 136 v~~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 177 (257)
T PRK07067 136 INMASQAGRRGE----------A----------------------------LVSHYCATKAAVISYTQSAALALIRHGIN 177 (257)
T ss_pred EEeCCHHhCCCC----------C----------------------------CCchhhhhHHHHHHHHHHHHHHhcccCeE
Confidence 999997432110 0 015899999998888876644 6899
Q ss_pred EEEeecceeecccCCCCccccCCC--CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNI--NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~--~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++++|||.|.++..+......... ..+..... ..+.......+.+++|+|++++.++..... ...+.
T Consensus 178 v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~dva~~~~~l~s~~~~--~~~g~ 246 (257)
T PRK07067 178 VNAIAPGVVDTPMWDQVDALFARYENRPPGEKKR---------LVGEAVPLGRMGVPDDLTGMALFLASADAD--YIVAQ 246 (257)
T ss_pred EEEEeeCcccchhhhhhhhhhhhccCCCHHHHHH---------HHhhcCCCCCccCHHHHHHHHHHHhCcccc--cccCc
Confidence 999999999886422110000000 00000000 112222345688999999999988865431 12578
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
+|++.++
T Consensus 247 ~~~v~gg 253 (257)
T PRK07067 247 TYNVDGG 253 (257)
T ss_pred EEeecCC
Confidence 9999887
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=156.77 Aligned_cols=233 Identities=14% Similarity=0.117 Sum_probs=159.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++++||||||+||+.+++.|++.|.+ |+++.|+.. +.+++.+ .+ ...++.++.+|+++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~---v~~~~r~~~------~~~~~~~-----~~-------~~~~~~~~~~D~~~ 60 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDR---VLALDIDAA------ALAAFAD-----AL-------GDARFVPVACDLTD 60 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----Hh-------cCCceEEEEecCCC
Confidence 578999999999999999999999865 888888642 1221110 00 11468899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V~v 244 (614)
++ ++..+++ ++|+|||+||.... .+.+....++|+.|+.++++.+.. + .+..++|++
T Consensus 61 ~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ 134 (257)
T PRK07074 61 AA------SLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNI 134 (257)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 76 5655554 48999999986432 234556678999999999888732 1 345689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ...|+.||+..|.+++..+. .|+++++
T Consensus 135 sS~~~~~~~~---------------------------------------~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~ 175 (257)
T PRK07074 135 GSVNGMAALG---------------------------------------HPAYSAAKAGLIHYTKLLAVEYGRFGIRANA 175 (257)
T ss_pred cchhhcCCCC---------------------------------------CcccHHHHHHHHHHHHHHHHHHhHhCeEEEE
Confidence 9975421100 03699999999988888765 4899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+|||.+.++.... .......+...... .....++++++|++++++.++..... ...+.++++.
T Consensus 176 v~pg~v~t~~~~~------~~~~~~~~~~~~~~---------~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~~~ 238 (257)
T PRK07074 176 VAPGTVKTQAWEA------RVAANPQVFEELKK---------WYPLQDFATPDDVANAVLFLASPAAR--AITGVCLPVD 238 (257)
T ss_pred EEeCcCCcchhhc------ccccChHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCchhc--CcCCcEEEeC
Confidence 9999987653210 00001111111111 11235789999999999999854321 1257788888
Q ss_pred cCCcccccHHHHHHHHhhh
Q psy6053 401 SSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 401 ~~~~~~it~~e~~~~~~~~ 419 (614)
++ .....+|+.+.+.+.
T Consensus 239 ~g--~~~~~~~~~~~~~~~ 255 (257)
T PRK07074 239 GG--LTAGNREMARTLTLE 255 (257)
T ss_pred CC--cCcCChhhhhhhccc
Confidence 87 777889988877653
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-16 Score=158.48 Aligned_cols=229 Identities=14% Similarity=0.153 Sum_probs=150.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+++||||+|+||++++++|+++|.. |+++.|+.. ++++.. +.++. ...++.++.+|++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~---V~~~~r~~~------~~~~~~-----~~~~~-----~~~~~~~~~~Dl~ 69 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGFP---VALGARRVE------KCEELV-----DKIRA-----DGGEAVAFPLDVT 69 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHH-----HHHHh-----cCCeEEEEECCCC
Confidence 4579999999999999999999999865 788887532 222211 01110 2246888999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+.++++.+... .+..+||+
T Consensus 70 ~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~ 143 (274)
T PRK07775 70 DPD------SVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIF 143 (274)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 876 5655554 57999999997532 2345667899999999998887531 24567999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.+|+..|.+++.... .|++++
T Consensus 144 isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~ 185 (274)
T PRK07775 144 VGSDVALRQRP--------------------------------------HMGAYGAAKAGLEAMVTNLQMELEGTGVRAS 185 (274)
T ss_pred ECChHhcCCCC--------------------------------------CcchHHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 99986543210 015799999999999988764 389999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
++|||.+.++..... .. .....++..... .+ ......++++||+|++++.++.++. .+.+||+
T Consensus 186 ~v~pG~~~t~~~~~~---~~--~~~~~~~~~~~~------~~-~~~~~~~~~~~dva~a~~~~~~~~~-----~~~~~~~ 248 (274)
T PRK07775 186 IVHPGPTLTGMGWSL---PA--EVIGPMLEDWAK------WG-QARHDYFLRASDLARAITFVAETPR-----GAHVVNM 248 (274)
T ss_pred EEeCCcccCcccccC---Ch--hhhhHHHHHHHH------hc-ccccccccCHHHHHHHHHHHhcCCC-----CCCeeEE
Confidence 999987744321100 00 001111111111 01 1123558999999999999887542 4568888
Q ss_pred ccCCcccccH
Q psy6053 400 TSSQEWQVSW 409 (614)
Q Consensus 400 ~~~~~~~it~ 409 (614)
.-....++..
T Consensus 249 ~~~~~~~~~~ 258 (274)
T PRK07775 249 EVQPEAPLRA 258 (274)
T ss_pred eeccCCCCCC
Confidence 6543344433
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=158.82 Aligned_cols=165 Identities=17% Similarity=0.188 Sum_probs=122.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|+||||||+||++++++|++.|++ |+++.|+.. +++++.. . ...++..+.+|++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~---V~~~~r~~~------~~~~l~~---------~----~~~~~~~~~~D~~ 60 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHR---VVGTVRSEA------ARADFEA---------L----HPDRALARLLDVT 60 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCE---EEEEeCCHH------HHHHHHh---------h----cCCCeeEEEccCC
Confidence 4688999999999999999999999876 889998642 2222111 0 2246888999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH---cCCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE---MKHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~---~~~~k~~V~ 243 (614)
+++ .+..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+.. ..+..++|+
T Consensus 61 d~~------~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~ 134 (277)
T PRK06180 61 DFD------AIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVN 134 (277)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEE
Confidence 976 5555544 57999999997542 244567799999999999998543 134568999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... | ....|+.||+..|.+++.... .|++++
T Consensus 135 iSS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 176 (277)
T PRK06180 135 ITSMGGLITM----------P----------------------------GIGYYCGSKFALEGISESLAKEVAPFGIHVT 176 (277)
T ss_pred EecccccCCC----------C----------------------------CcchhHHHHHHHHHHHHHHHHHhhhhCcEEE
Confidence 9998653211 0 015799999999988877654 489999
Q ss_pred EeecceeecccC
Q psy6053 320 MLRPSIIIPVWR 331 (614)
Q Consensus 320 IvRp~~I~g~~~ 331 (614)
++|||.+.++..
T Consensus 177 ~i~Pg~v~t~~~ 188 (277)
T PRK06180 177 AVEPGSFRTDWA 188 (277)
T ss_pred EEecCCcccCcc
Confidence 999999977643
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-16 Score=155.16 Aligned_cols=220 Identities=16% Similarity=0.125 Sum_probs=148.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++++||||||+||++++++|++.|.+ |+++.|.... ..+.+.+ .++ + ...++.++.+|+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~---v~~~~~~~~~--~~~~~~~--------~l~----~-~~~~~~~~~~D~ 65 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAK---VVINYNSSKE--AAENLVN--------ELG----K-EGHDVYAVQADV 65 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCE---EEEEcCCcHH--HHHHHHH--------HHH----h-cCCeEEEEECCC
Confidence 45799999999999999999999999876 5555443211 1111111 111 1 224688999999
Q ss_pred CCCCCCCCHHHHHHHhcc-------ccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLASE-------VDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~-------vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
+++. .+..++++ +|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 139 (247)
T PRK12935 66 SKVE------DANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRII 139 (247)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9876 56555543 7999999997542 2566778999999999999988742 2346899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||.++..... ....|+.||+..|.+++.... .++++
T Consensus 140 ~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v 181 (247)
T PRK12935 140 SISSIIGQAGGF--------------------------------------GQTNYSAAKAGMLGFTKSLALELAKTNVTV 181 (247)
T ss_pred EEcchhhcCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 999976532210 015899999988877766544 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++++||.|.++.... .+.........+ ....++.+++|++++++.++.... -..+++||
T Consensus 182 ~~v~pg~v~t~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~edva~~~~~~~~~~~---~~~g~~~~ 240 (247)
T PRK12935 182 NAICPGFIDTEMVAE---------VPEEVRQKIVAK---------IPKKRFGQADEIAKGVVYLCRDGA---YITGQQLN 240 (247)
T ss_pred EEEEeCCCcChhhhh---------ccHHHHHHHHHh---------CCCCCCcCHHHHHHHHHHHcCccc---CccCCEEE
Confidence 999999886542110 111111111111 123457899999999999885431 12678999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 241 i~~g 244 (247)
T PRK12935 241 INGG 244 (247)
T ss_pred eCCC
Confidence 9876
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-16 Score=158.71 Aligned_cols=236 Identities=16% Similarity=0.088 Sum_probs=152.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |++..|+.. ++++.. +.++. ...++.++.+|+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~---Vv~~~r~~~------~l~~~~-----~~l~~-----~~~~~~~~~~Dv 64 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGAR---VVLGDVDKP------GLRQAV-----NHLRA-----EGFDVHGVMCDV 64 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHH-----HHHHh-----cCCeEEEEeCCC
Confidence 56899999999999999999999999876 777777642 222211 01111 224688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH----cCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE----MKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~~~k~~ 241 (614)
++++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++.+.. .+...++
T Consensus 65 ~d~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~i 138 (275)
T PRK05876 65 RHRE------EVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHV 138 (275)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEE
Confidence 9976 6666554 47999999996421 245667889999999999988753 1124689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHH----HHHHHHHHhhCCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCL----SEGLVVEAMNNGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~----aE~lv~~~~~~glp 317 (614)
|++||..+.... | ....|+.||+. +|.+..+...+|++
T Consensus 139 v~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~ 180 (275)
T PRK05876 139 VFTASFAGLVPN----------A----------------------------GLGAYGVAKYGVVGLAETLAREVTADGIG 180 (275)
T ss_pred EEeCChhhccCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 999998654221 0 12579999996 66666666556999
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+++++||.+.++.......... ............+......++++++|+|++++.++.+ ++.|
T Consensus 181 v~~v~Pg~v~t~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~--------~~~~ 243 (275)
T PRK05876 181 VSVLCPMVVETNLVANSERIRG---------AACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILA--------NRLY 243 (275)
T ss_pred EEEEEeCccccccccchhhhcC---------ccccccccccccccccccccCCCHHHHHHHHHHHHHc--------CCeE
Confidence 9999999886653211000000 0000000011123334556789999999999988854 2345
Q ss_pred EeccCCcccccHHHHHHHHhhh
Q psy6053 398 HLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 398 ni~~~~~~~it~~e~~~~~~~~ 419 (614)
.+.+ +..+..+.+...+.
T Consensus 244 ~~~~----~~~~~~~~~~~~~~ 261 (275)
T PRK05876 244 VLPH----AASRASIRRRFERI 261 (275)
T ss_pred EecC----hhhHHHHHHHHHHH
Confidence 5543 34555555555554
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=158.06 Aligned_cols=220 Identities=13% Similarity=0.135 Sum_probs=148.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|+||||||+||++++++|++.|++ |+++.|..... ..+-.+++ + . ...++.++.+|+++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~---vi~~~r~~~~~-~~~~~~~~---------~----~-~~~~~~~~~~D~~~ 63 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFD---LAINDRPDDEE-LAATQQEL---------R----A-LGVEVIFFPADVAD 63 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCE---EEEEecCchhH-HHHHHHHH---------H----h-cCCceEEEEecCCC
Confidence 378999999999999999999999875 78888764321 11111111 1 0 22468899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh---------hHHHHHHHHHhHHHHHHHHHHHHHc----CC----
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF---------DEALKKAVLLNTRGTKMMLSLAKEM----KH---- 237 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~----~~---- 237 (614)
++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++.+... ++
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~ 137 (256)
T PRK12745 64 LS------AHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEEL 137 (256)
T ss_pred HH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCC
Confidence 76 5555443 57999999986421 2556778999999999998887542 11
Q ss_pred -CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---
Q psy6053 238 -LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--- 313 (614)
Q Consensus 238 -~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--- 313 (614)
..++|++||..+..... ....|+.||+..|.+++....
T Consensus 138 ~~~~iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~ 179 (256)
T PRK12745 138 PHRSIVFVSSVNAIMVSP--------------------------------------NRGEYCISKAGLSMAAQLFAARLA 179 (256)
T ss_pred CCcEEEEECChhhccCCC--------------------------------------CCcccHHHHHHHHHHHHHHHHHHH
Confidence 46799999986532210 126799999999999887764
Q ss_pred -CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
.|++++++|||.+.++...+ +.+. .......+.. ....+.+++|+++++..++..... ..
T Consensus 180 ~~gi~v~~i~pg~v~t~~~~~---~~~~------~~~~~~~~~~--------~~~~~~~~~d~a~~i~~l~~~~~~--~~ 240 (256)
T PRK12745 180 EEGIGVYEVRPGLIKTDMTAP---VTAK------YDALIAKGLV--------PMPRWGEPEDVARAVAALASGDLP--YS 240 (256)
T ss_pred HhCCEEEEEecCCCcCccccc---cchh------HHhhhhhcCC--------CcCCCcCHHHHHHHHHHHhCCccc--cc
Confidence 58999999999987754321 1111 1111111111 123467899999998887754321 13
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.+.+|++.++
T Consensus 241 ~G~~~~i~gg 250 (256)
T PRK12745 241 TGQAIHVDGG 250 (256)
T ss_pred CCCEEEECCC
Confidence 5789999877
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-16 Score=156.35 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=147.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++++|||||||||||++++++|++.|++ |++..|+... ++.+... .++. ...++..+.+|++
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~~---v~~~~~~~~~-----~~~~~~~-----~~~~-----~~~~~~~~~~D~~ 66 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGSL---VVVNAKKRAE-----EMNETLK-----MVKE-----NGGEGIGVLADVS 66 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCChH-----HHHHHHH-----HHHH-----cCCeeEEEEeccC
Confidence 4789999999999999999999999876 6666665321 1111110 1110 2235778899999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEe
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHIS 245 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vS 245 (614)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+.+. ....+||++|
T Consensus 67 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 140 (252)
T PRK06077 67 TRE------GCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIA 140 (252)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEc
Confidence 876 4544443 68999999996321 2335677899999999999988753 2235799999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEee
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLR 322 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvR 322 (614)
|..+..... ..+.|+.||...|.+++.... .++.+.+++
T Consensus 141 S~~~~~~~~--------------------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~ 182 (252)
T PRK06077 141 SVAGIRPAY--------------------------------------GLSIYGAMKAAVINLTKYLALELAPKIRVNAIA 182 (252)
T ss_pred chhccCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 986542210 015899999999999987766 378999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
||.|.++.......+. + ..... ... .......+++++|+|++++.++.... ..+++|++.++
T Consensus 183 Pg~i~t~~~~~~~~~~-~--~~~~~---~~~--------~~~~~~~~~~~~dva~~~~~~~~~~~----~~g~~~~i~~g 244 (252)
T PRK06077 183 PGFVKTKLGESLFKVL-G--MSEKE---FAE--------KFTLMGKILDPEEVAEFVAAILKIES----ITGQVFVLDSG 244 (252)
T ss_pred eCCccChHHHhhhhcc-c--ccHHH---HHH--------hcCcCCCCCCHHHHHHHHHHHhCccc----cCCCeEEecCC
Confidence 9988665321110000 0 00000 000 01112368999999999999886443 26789999887
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=154.84 Aligned_cols=225 Identities=13% Similarity=0.131 Sum_probs=143.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|++ |+++.|... ..+..+++ . . ...++.++.+|+
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~---v~~~~r~~~---~~~~~~~~---------~----~-~~~~~~~~~~D~ 65 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGAR---VVLVDRSEL---VHEVAAEL---------R----A-AGGEALALTADL 65 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCchH---HHHHHHHH---------H----h-cCCeEEEEEEeC
Confidence 67899999999999999999999999876 778888632 11111111 1 0 234678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHH----HcCCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAK----EMKHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~ 240 (614)
++++ +...+++ ++|++||+||... + .+.+...+++|+.|+..+++.+. + .+..+
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~ 138 (260)
T PRK12823 66 ETYA------GAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLA-QGGGA 138 (260)
T ss_pred CCHH------HHHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCe
Confidence 9865 4444443 5899999998431 1 24456678899998876655443 4 35568
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.+.. ...|+.||+..|.+++..+. +|+
T Consensus 139 iv~~sS~~~~~~~----------------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi 178 (260)
T PRK12823 139 IVNVSSIATRGIN----------------------------------------RVPYSAAKGGVNALTASLAFEYAEHGI 178 (260)
T ss_pred EEEEcCccccCCC----------------------------------------CCccHHHHHHHHHHHHHHHHHhcccCc
Confidence 9999998653210 15799999999999887754 489
Q ss_pred CEEEeecceeecccCCCCcc---ccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 317 PCLMLRPSIIIPVWREPLPG---WTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~g---w~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
++.+++||.|+++...-..+ +.+.... ...+......+.. ..-+..++|+|++++.++..... ..
T Consensus 179 ~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~s~~~~--~~ 247 (260)
T PRK12823 179 RVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSL---------MKRYGTIDEQVAAILFLASDEAS--YI 247 (260)
T ss_pred EEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCC---------cccCCCHHHHHHHHHHHcCcccc--cc
Confidence 99999999998863110000 0000000 1112112222111 11133689999999887754321 12
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.+.++++.++
T Consensus 248 ~g~~~~v~gg 257 (260)
T PRK12823 248 TGTVLPVGGG 257 (260)
T ss_pred cCcEEeecCC
Confidence 5678888765
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-16 Score=156.74 Aligned_cols=227 Identities=12% Similarity=0.106 Sum_probs=148.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.+++++|||||+|++|.+++++|+++|++ |+++.|+... .+.+.+ +.++ .++.++.+|+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~---V~~~~r~~~~---~~~~~~------------~~~~---~~~~~~~~D~ 67 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGAR---VHVCDVSEAA---LAATAA------------RLPG---AKVTATVADV 67 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHH------------HHhc---CceEEEEccC
Confidence 56899999999999999999999999876 8899986432 122211 1111 2678899999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCC-ce
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---KHL-EL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k~ 240 (614)
++++ .+..++ .++|+|||+||... ..+.+...+++|+.|+.++++.+... .+. +.
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 141 (264)
T PRK12829 68 ADPA------QVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGV 141 (264)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeE
Confidence 9866 555544 36899999999761 12456778999999999998877431 233 56
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
++++||.+..... | ....|+.+|...|.++...+. .++
T Consensus 142 vv~~ss~~~~~~~----------~----------------------------~~~~y~~~K~a~~~~~~~l~~~~~~~~i 183 (264)
T PRK12829 142 IIALSSVAGRLGY----------P----------------------------GRTPYAASKWAVVGLVKSLAIELGPLGI 183 (264)
T ss_pred EEEecccccccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCe
Confidence 8888876532110 0 014699999999999887654 489
Q ss_pred CEEEeecceeecccCCCCccccCC-C-CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDN-I-NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~-~-~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
+++++|||.++++........... . .+.........+ ......+++++|+|+++..++..... ...+
T Consensus 184 ~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g 252 (264)
T PRK12829 184 RVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLE---------KISLGRMVEPEDIAATALFLASPAAR--YITG 252 (264)
T ss_pred EEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCcccc--CccC
Confidence 999999999988754221100000 0 000011111111 01123489999999998887643211 1357
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+.|+++++
T Consensus 253 ~~~~i~~g 260 (264)
T PRK12829 253 QAISVDGN 260 (264)
T ss_pred cEEEeCCC
Confidence 79999887
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=154.40 Aligned_cols=225 Identities=12% Similarity=0.125 Sum_probs=150.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+++++|||||||++|++++++|++.|++ |+++.|+... .+++.+. ++. ...++.++.+|++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~---v~~~~r~~~~---~~~~~~~--------~~~-----~~~~~~~~~~d~~ 62 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAK---VAVFDLNREA---AEKVAAD--------IRA-----KGGNAQAFACDIT 62 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEecCCHHH---HHHHHHH--------HHh-----cCCcEEEEEcCCC
Confidence 5789999999999999999999999876 8888886422 2222211 110 2246889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccC---h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIR---F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~---~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+++ +++.+++ ++|+|||+|+... + .+.++..+++|+.|+.++++.+... .+.+++++
T Consensus 63 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~ 136 (250)
T TIGR03206 63 DRD------SVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVN 136 (250)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 865 5655554 5899999998532 1 2345667999999999998877521 35678999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.+|+..+.+++..+. .+++++
T Consensus 137 iss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~ 178 (250)
T TIGR03206 137 IASDAARVGSS--------------------------------------GEAVYAACKGGLVAFSKTMAREHARHGITVN 178 (250)
T ss_pred ECchhhccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHhHhCcEEE
Confidence 99986543211 015799999888888877655 489999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
++|||.++++......++ ...+..+...+..... ...+...+|+|+++..++..... ...++++++
T Consensus 179 ~v~pg~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~~ 244 (250)
T TIGR03206 179 VVCPGPTDTALLDDICGG---AENPEKLREAFTRAIP---------LGRLGQPDDLPGAILFFSSDDAS--FITGQVLSV 244 (250)
T ss_pred EEecCcccchhHHhhhhc---cCChHHHHHHHHhcCC---------ccCCcCHHHHHHHHHHHcCcccC--CCcCcEEEe
Confidence 999999987643221111 1122222222222111 01234568999999998765421 125788888
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 245 ~~g 247 (250)
T TIGR03206 245 SGG 247 (250)
T ss_pred CCC
Confidence 765
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=152.60 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=148.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|+||||||++|+++++.|+++|++ |+++.|+.... +.+.+. ++ . ...++.++.+|++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~---v~~~~r~~~~~---~~~~~~--------~~----~-~~~~~~~~~~D~~ 64 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAK---VVIYDSNEEAA---EALAAE--------LR----A-AGGEARVLVFDVS 64 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCChhHH---HHHHHH--------HH----h-cCCceEEEEccCC
Confidence 4689999999999999999999999876 88888875321 111111 11 1 2346889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+++ ++..+++ .+|+|||+||.... .+.+...++.|+.++.++++.+... .+.+++|+
T Consensus 65 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~ 138 (246)
T PRK05653 65 DEA------AVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVN 138 (246)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 876 5555544 46999999987543 2345677899999999999888431 35689999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... .....|+.+|...|.+++...+ .+++++
T Consensus 139 ~ss~~~~~~~--------------------------------------~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~ 180 (246)
T PRK05653 139 ISSVSGVTGN--------------------------------------PGQTNYSAAKAGVIGFTKALALELASRGITVN 180 (246)
T ss_pred ECcHHhccCC--------------------------------------CCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 9997542211 0125799999988888877654 489999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
++|||.+.++...++ ........... .....++.++|+++++..++..... ...+++|++
T Consensus 181 ~i~pg~~~~~~~~~~---------~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~~~~~~~~--~~~g~~~~~ 240 (246)
T PRK05653 181 AVAPGFIDTDMTEGL---------PEEVKAEILKE---------IPLGRLGQPEEVANAVAFLASDAAS--YITGQVIPV 240 (246)
T ss_pred EEEeCCcCCcchhhh---------hHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhc--CccCCEEEe
Confidence 999999987643210 00111111111 1114467889999999988754321 125789998
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
+++
T Consensus 241 ~gg 243 (246)
T PRK05653 241 NGG 243 (246)
T ss_pred CCC
Confidence 876
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-15 Score=155.33 Aligned_cols=224 Identities=13% Similarity=0.090 Sum_probs=150.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |++..|+...... +.+.+.++ . ...++.++.+|+
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~---V~i~~~~~~~~~~-~~~~~~~~--------~-----~~~~~~~~~~Dl 115 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGAD---IALNYLPEEEQDA-AEVVQLIQ--------A-----EGRKAVALPGDL 115 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCE---EEEEeCCcchHHH-HHHHHHHH--------H-----cCCeEEEEecCC
Confidence 56799999999999999999999999876 6555554332211 22222111 0 234678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~ 243 (614)
++++ +.+.+++ ++|+|||+||... + .+.++..+++|+.|+.++++.+... ..-.++|+
T Consensus 116 ~~~~------~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 116 KDEA------FCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence 9865 5555543 6899999999632 1 3567788999999999999999752 22358999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..++.... ....|+.||+..+.+++..+. +|+++.
T Consensus 190 ~sS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~el~~~gI~v~ 231 (300)
T PRK06128 190 TGSIQSYQPSP--------------------------------------TLLDYASTKAAIVAFTKALAKQVAEKGIRVN 231 (300)
T ss_pred ECCccccCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 99987643211 014699999999999887654 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
+++||.|.++..... . . .......+.... ....+...+|+|++++.++..... -..+++|++
T Consensus 232 ~v~PG~i~t~~~~~~-----~-~-~~~~~~~~~~~~---------p~~r~~~p~dva~~~~~l~s~~~~--~~~G~~~~v 293 (300)
T PRK06128 232 AVAPGPVWTPLQPSG-----G-Q-PPEKIPDFGSET---------PMKRPGQPVEMAPLYVLLASQESS--YVTGEVFGV 293 (300)
T ss_pred EEEECcCcCCCcccC-----C-C-CHHHHHHHhcCC---------CCCCCcCHHHHHHHHHHHhCcccc--CccCcEEee
Confidence 999999987643210 0 0 111221221111 112355789999998887754321 125789999
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 294 ~gg 296 (300)
T PRK06128 294 TGG 296 (300)
T ss_pred CCC
Confidence 877
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-16 Score=155.20 Aligned_cols=227 Identities=17% Similarity=0.168 Sum_probs=154.9
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|+||||||.+|+.+++.|++.+++ |.+++|+.+. ++.+++ ....++++.+|+.+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~---V~~l~R~~~~----~~~~~l----------------~~~g~~vv~~d~~~~~- 56 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS---VRALVRDPSS----DRAQQL----------------QALGAEVVEADYDDPE- 56 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC---EEEEESSSHH----HHHHHH----------------HHTTTEEEES-TT-HH-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC---cEEEEeccch----hhhhhh----------------hcccceEeecccCCHH-
Confidence 799999999999999999998766 9999998732 222222 1135678899999765
Q ss_pred CCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccCCCC
Q psy6053 185 AIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPP 264 (614)
Q Consensus 185 GLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~~~p 264 (614)
.+.++++++|+||.+-+... . .-+....+++++|++. ++++||+.|......... .
T Consensus 57 -----~l~~al~g~d~v~~~~~~~~-~--------~~~~~~~~li~Aa~~a-gVk~~v~ss~~~~~~~~~----~----- 112 (233)
T PF05368_consen 57 -----SLVAALKGVDAVFSVTPPSH-P--------SELEQQKNLIDAAKAA-GVKHFVPSSFGADYDESS----G----- 112 (233)
T ss_dssp -----HHHHHHTTCSEEEEESSCSC-C--------CHHHHHHHHHHHHHHH-T-SEEEESEESSGTTTTT----T-----
T ss_pred -----HHHHHHcCCceEEeecCcch-h--------hhhhhhhhHHHhhhcc-ccceEEEEEecccccccc----c-----
Confidence 89999999999999887654 1 1123347899999995 799999644433321110 0
Q ss_pred CChhHHHHHHhhcchhHHhhhhhhhcCCCC-CchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCCc
Q psy6053 265 TDPHKLIERVEMMSEDTVEKRAKEFLGEFP-NSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNING 343 (614)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~p-n~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~g 343 (614)
..| ...-..|...|+.+++. +++++++|||+.+...-.+..++.+
T Consensus 113 ---------------------------~~p~~~~~~~k~~ie~~l~~~---~i~~t~i~~g~f~e~~~~~~~~~~~---- 158 (233)
T PF05368_consen 113 ---------------------------SEPEIPHFDQKAEIEEYLRES---GIPYTIIRPGFFMENLLPPFAPVVD---- 158 (233)
T ss_dssp ---------------------------STTHHHHHHHHHHHHHHHHHC---TSEBEEEEE-EEHHHHHTTTHHTTC----
T ss_pred ---------------------------ccccchhhhhhhhhhhhhhhc---cccceeccccchhhhhhhhhccccc----
Confidence 001 22345788889888877 8999999999876654332222111
Q ss_pred hHHHHHHHhcC-ceeeEeeCCCccccce-eHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhcc
Q psy6053 344 PTGLLIGAGKG-VIRTMFCDNTGYADFL-PVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVT 421 (614)
Q Consensus 344 ~~~~~~~~~~g-~~~~~~~~~~~~~d~v-pVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g 421 (614)
.... ....++++++....++ ..+|+++++..++.++.. ...+..+.+++ +.+|++|+++.+.+.+|
T Consensus 159 -------~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~--~~~~~~~~~~~---~~~t~~eia~~~s~~~G 226 (233)
T PF05368_consen 159 -------IKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEK--HNNGKTIFLAG---ETLTYNEIAAILSKVLG 226 (233)
T ss_dssp -------SCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGG--TTEEEEEEEGG---GEEEHHHHHHHHHHHHT
T ss_pred -------ccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHH--hcCCEEEEeCC---CCCCHHHHHHHHHHHHC
Confidence 1111 1234566777667775 999999999999988653 11456777755 46899999999999999
Q ss_pred cccC
Q psy6053 422 TEVP 425 (614)
Q Consensus 422 ~~~p 425 (614)
+++.
T Consensus 227 ~~v~ 230 (233)
T PF05368_consen 227 KKVK 230 (233)
T ss_dssp SEEE
T ss_pred CccE
Confidence 8643
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=151.91 Aligned_cols=210 Identities=13% Similarity=0.094 Sum_probs=146.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+||||||||++|.+++++|++.|++ |+++.|..... .+.++++ ...++..+.+|+
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~---v~~~~r~~~~~--~~~~~~~----------------~~~~~~~~~~D~ 63 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGAR---VALIGRGAAPL--SQTLPGV----------------PADALRIGGIDL 63 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCe---EEEEeCChHhH--HHHHHHH----------------hhcCceEEEeec
Confidence 45799999999999999999999999876 89999965321 1222222 113466788999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++.+ +++.+++ ++|+|||+|+.... .+.+...+++|+.|+.++++.+.+. .+.+++|
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv 137 (239)
T PRK12828 64 VDPQ------AARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIV 137 (239)
T ss_pred CCHH------HHHHHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 5555544 58999999986421 3445677899999999998887531 3578999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... + -..|+.+|...+.++..... .++++
T Consensus 138 ~~sS~~~~~~~~---------~-----------------------------~~~y~~sk~a~~~~~~~~a~~~~~~~i~~ 179 (239)
T PRK12828 138 NIGAGAALKAGP---------G-----------------------------MGAYAAAKAGVARLTEALAAELLDRGITV 179 (239)
T ss_pred EECchHhccCCC---------C-----------------------------cchhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 999986543210 0 14699999988888876554 48999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
.++|||.++++.... . . + ......+++++|+|+++..++..... ...+..++
T Consensus 180 ~~i~pg~v~~~~~~~------~--~----------------~--~~~~~~~~~~~dva~~~~~~l~~~~~--~~~g~~~~ 231 (239)
T PRK12828 180 NAVLPSIIDTPPNRA------D--M----------------P--DADFSRWVTPEQIAAVIAFLLSDEAQ--AITGASIP 231 (239)
T ss_pred EEEecCcccCcchhh------c--C----------------C--chhhhcCCCHHHHHHHHHHHhCcccc--cccceEEE
Confidence 999999998763210 0 0 0 00112278999999999888865421 12467888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 232 ~~g~ 235 (239)
T PRK12828 232 VDGG 235 (239)
T ss_pred ecCC
Confidence 8776
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=152.81 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=147.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEE-EEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYI-LMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~-LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+.+++++||||||+||++++++|++.|++ |++ +.|.... .+.+.+. ++. ...++.++.+|
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~---v~~~~~r~~~~---~~~~~~~--------~~~-----~~~~~~~~~~D 62 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYD---IAVNYARSRKA---AEETAEE--------IEA-----LGRKALAVKAN 62 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEcCCCHHH---HHHHHHH--------HHh-----cCCeEEEEEcC
Confidence 35789999999999999999999999876 444 4665321 1111111 110 23468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ ++..+++ .+|+|||+|+.... .+.+...+++|+.|+.++++.+... .+.++|
T Consensus 63 ~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~i 136 (250)
T PRK08063 63 VGDVE------KIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKI 136 (250)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEE
Confidence 99876 6666554 47999999986432 2344557889999999998888752 245699
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+++.... .|++
T Consensus 137 v~~sS~~~~~~~~--------------------------------------~~~~y~~sK~a~~~~~~~~~~~~~~~~i~ 178 (250)
T PRK08063 137 ISLSSLGSIRYLE--------------------------------------NYTTVGVSKAALEALTRYLAVELAPKGIA 178 (250)
T ss_pred EEEcchhhccCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHhHhCeE
Confidence 9999975432110 015799999999999887654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+++++||.+..+.....++ ...+...... .. ....+++.+|+|++++.++.+... ...++++
T Consensus 179 v~~i~pg~v~t~~~~~~~~-------~~~~~~~~~~-~~--------~~~~~~~~~dva~~~~~~~~~~~~--~~~g~~~ 240 (250)
T PRK08063 179 VNAVSGGAVDTDALKHFPN-------REELLEDARA-KT--------PAGRMVEPEDVANAVLFLCSPEAD--MIRGQTI 240 (250)
T ss_pred EEeEecCcccCchhhhccC-------chHHHHHHhc-CC--------CCCCCcCHHHHHHHHHHHcCchhc--CccCCEE
Confidence 9999999996654322111 1111111111 10 012368899999999988765432 1257788
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 241 ~~~gg 245 (250)
T PRK08063 241 IVDGG 245 (250)
T ss_pred EECCC
Confidence 88776
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=153.28 Aligned_cols=222 Identities=14% Similarity=0.132 Sum_probs=151.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|++|+.++++|++.|++ |+++.|+.. ++++.. +.++. ...++.++.+|+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~-----~~i~~-----~~~~~~~~~~D~ 68 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAE---VILNGRDPA------KLAAAA-----ESLKG-----QGLSAHALAFDV 68 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCE---EEEEeCCHH------HHHHHH-----HHHHh-----cCceEEEEEccC
Confidence 46899999999999999999999999876 888888642 222211 11111 224588899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++.+.+. .+.+++|
T Consensus 69 ~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 142 (255)
T PRK07523 69 TDHD------AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKII 142 (255)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEE
Confidence 9876 6666654 47999999997531 3456778899999999999988752 2457899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.+|...|.+++.... +|+++
T Consensus 143 ~iss~~~~~~~----------~----------------------------~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v 184 (255)
T PRK07523 143 NIASVQSALAR----------P----------------------------GIAPYTATKGAVGNLTKGMATDWAKHGLQC 184 (255)
T ss_pred EEccchhccCC----------C----------------------------CCccHHHHHHHHHHHHHHHHHHhhHhCeEE
Confidence 99997542110 0 015799999999999887754 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
.++|||.+.++..... .........+.... ....+..++|+|++++.++..... ...+.+++
T Consensus 185 ~~i~pg~~~t~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~i~ 246 (255)
T PRK07523 185 NAIAPGYFDTPLNAAL-------VADPEFSAWLEKRT---------PAGRWGKVEELVGACVFLASDASS--FVNGHVLY 246 (255)
T ss_pred EEEEECcccCchhhhh-------ccCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhc--CccCcEEE
Confidence 9999999877643211 00011111111111 112356789999999888764321 12577888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 247 ~~gg 250 (255)
T PRK07523 247 VDGG 250 (255)
T ss_pred ECCC
Confidence 8877
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=152.20 Aligned_cols=224 Identities=13% Similarity=0.142 Sum_probs=149.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+++||||+|++|++|+++|++.|++ |+++.|+... ..+..+++ + ...++.++.+|+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~---v~~~~r~~~~--~~~~~~~~---------~------~~~~~~~~~~D~ 62 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGAR---VVVADRDAEA--AERVAAAI---------A------AGGRAFARQGDV 62 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCe---EEEecCCHHH--HHHHHHHH---------h------cCCeEEEEEcCC
Confidence 35789999999999999999999999876 8888887421 11111111 0 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHH----HHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLA----KEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~ 241 (614)
++++ +++++++ ++|+|||+|+... -.+.++..+++|+.|+.++.+.+ ++ .+.+++
T Consensus 63 ~~~~------~~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~i 135 (252)
T PRK06138 63 GSAE------AVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQR-QGGGSI 135 (252)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHh-cCCeEE
Confidence 9876 5655544 6899999999643 13445667899999997776655 34 356789
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
+++||..+..... ..+.|+.+|...+.+++.... .|++
T Consensus 136 i~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~ 177 (252)
T PRK06138 136 VNTASQLALAGGR--------------------------------------GRAAYVASKGAIASLTRAMALDHATDGIR 177 (252)
T ss_pred EEECChhhccCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHHhcCeE
Confidence 9999985532110 026799999999999888754 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.+.++.......+.. .+..+ .....+ ......+++++|++++++.++..... ...+..+
T Consensus 178 v~~v~pg~~~t~~~~~~~~~~~---~~~~~-~~~~~~--------~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~ 243 (252)
T PRK06138 178 VNAVAPGTIDTPYFRRIFARHA---DPEAL-REALRA--------RHPMNRFGTAEEVAQAALFLASDESS--FATGTTL 243 (252)
T ss_pred EEEEEECCccCcchhhhhcccc---ChHHH-HHHHHh--------cCCCCCCcCHHHHHHHHHHHcCchhc--CccCCEE
Confidence 9999999998775432212111 11111 111111 01112367899999999998866432 1245677
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 244 ~~~~g 248 (252)
T PRK06138 244 VVDGG 248 (252)
T ss_pred EECCC
Confidence 77554
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=152.40 Aligned_cols=226 Identities=14% Similarity=0.136 Sum_probs=151.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++++||||||+||++++++|++.|.+ |.++.|+.... +..+++ +. ...++.++.+|+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~---v~~~~r~~~~~---~~~~~~---------~~-----~~~~~~~~~~D~ 64 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAI---PVIFGRSAPDD---EFAEEL---------RA-----LQPRAEFVQVDL 64 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCc---EEEEcCChhhH---HHHHHH---------Hh-----cCCceEEEEccC
Confidence 56899999999999999999999999876 77888875432 212221 11 234688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC---h---hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR---F---DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~---~---~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~v 244 (614)
++++ +++.+++ ++|+|||+||... + .+.++..+++|+.++.++.+.+... .+..+++++
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ 138 (258)
T PRK08628 65 TDDA------QCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNI 138 (258)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEE
Confidence 9876 5555554 5899999999532 1 2556778999999999998887642 133689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... + ....|+.||+..|.+++.... .++++..
T Consensus 139 ss~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~ 180 (258)
T PRK08628 139 SSKTALTGQ----------G----------------------------GTSGYAAAKGAQLALTREWAVALAKDGVRVNA 180 (258)
T ss_pred CCHHhccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEE
Confidence 998653211 0 015899999999999987654 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+|||.|.++... .|......+......+.+.. + .+ ..+++.+|+|++++.++..... ...+..+.+.
T Consensus 181 v~pg~v~t~~~~---~~~~~~~~~~~~~~~~~~~~----~-~~---~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~~~ 247 (258)
T PRK08628 181 VIPAEVMTPLYE---NWIATFDDPEAKLAAITAKI----P-LG---HRMTTAEEIADTAVFLLSERSS--HTTGQWLFVD 247 (258)
T ss_pred EecCccCCHHHH---HHhhhccCHHHHHHHHHhcC----C-cc---ccCCCHHHHHHHHHHHhChhhc--cccCceEEec
Confidence 999999886422 12222222211111111110 0 01 1367889999999998865432 1246677775
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 248 gg 249 (258)
T PRK08628 248 GG 249 (258)
T ss_pred CC
Confidence 54
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=151.00 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=148.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||+++++.|+++|++ |+++.|..... .+.++++.+ +... ...++.++.+|+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~---v~~~~~~~~~~--~~~~~~~~~---------~~~~-~~~~~~~~~~Dl 68 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD---VIVLDIHPMRG--RAEADAVAA---------GIEA-AGGKALGLAFDV 68 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe---EEEEcCccccc--HHHHHHHHH---------HHHh-cCCcEEEEEccC
Confidence 45789999999999999999999999887 77777653221 122222211 1111 234688999999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHH-----HcCCCce
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAK-----EMKHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~-----~~~~~k~ 240 (614)
++++ .++.++ .++|+|||+||.... .+.+...+++|+.|+.++++++. + .+.++
T Consensus 69 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~ 141 (249)
T PRK12827 69 RDFA------ATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRA-RRGGR 141 (249)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CCCeE
Confidence 9976 555554 358999999997541 24466788999999999999998 3 35678
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.+|+..+.+++..+. .++
T Consensus 142 iv~~sS~~~~~~~~--------------------------------------~~~~y~~sK~a~~~~~~~l~~~~~~~~i 183 (249)
T PRK12827 142 IVNIASVAGVRGNR--------------------------------------GQVNYAASKAGLIGLTKTLANELAPRGI 183 (249)
T ss_pred EEEECCchhcCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhhhhCc
Confidence 99999975532210 015799999998888877654 489
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++++|||.+.++..... .+.. ...+.. ....+.+++|++++++.++..... ...+++
T Consensus 184 ~~~~i~pg~v~t~~~~~~--------~~~~---~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~ 241 (249)
T PRK12827 184 TVNAVAPGAINTPMADNA--------APTE---HLLNPV---------PVQRLGEPDEVAALVAFLVSDAAS--YVTGQV 241 (249)
T ss_pred EEEEEEECCcCCCccccc--------chHH---HHHhhC---------CCcCCcCHHHHHHHHHHHcCcccC--CccCcE
Confidence 999999999987643211 0111 111100 011245889999998887754321 124678
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 242 ~~~~~g 247 (249)
T PRK12827 242 IPVDGG 247 (249)
T ss_pred EEeCCC
Confidence 888765
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=155.64 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=118.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|+||||||++|++++++|++.|++ |+++.|.. ++++++ ...++.++.+|++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~---V~~~~r~~------~~l~~~----------------~~~~~~~~~~Dv~ 56 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYT---VYGAARRV------DKMEDL----------------ASLGVHPLSLDVT 56 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHH----------------HhCCCeEEEeeCC
Confidence 4789999999999999999999999876 88888864 233332 1134788999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHH----HHHHHHHHHcCCCceEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGT----KMMLSLAKEMKHLELFV 242 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt----~~ll~la~~~~~~k~~V 242 (614)
+++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+ +.++..+++ .+..++|
T Consensus 57 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-~~~g~iv 129 (273)
T PRK06182 57 DEA------SIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRA-QRSGRII 129 (273)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHh-cCCCEEE
Confidence 876 6666655 68999999997532 245677889999985 455556665 3567899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... +....|+.||+..+.+.+.... .|+++
T Consensus 130 ~isS~~~~~~~--------------------------------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v 171 (273)
T PRK06182 130 NISSMGGKIYT--------------------------------------PLGAWYHATKFALEGFSDALRLEVAPFGIDV 171 (273)
T ss_pred EEcchhhcCCC--------------------------------------CCccHhHHHHHHHHHHHHHHHHHhcccCCEE
Confidence 99997642211 0114699999999998765442 58999
Q ss_pred EEeecceeeccc
Q psy6053 319 LMLRPSIIIPVW 330 (614)
Q Consensus 319 ~IvRp~~I~g~~ 330 (614)
+++|||.|.++.
T Consensus 172 ~~v~Pg~v~t~~ 183 (273)
T PRK06182 172 VVIEPGGIKTEW 183 (273)
T ss_pred EEEecCCccccc
Confidence 999999997653
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=152.12 Aligned_cols=230 Identities=11% Similarity=0.101 Sum_probs=150.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+.++|+||||||||+||++++++|+++|++ |+++.|+... .+.+.+. +.. ...++..+.+|
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~---V~~~~r~~~~---~~~~~~~--------~~~-----~~~~~~~~~~D 62 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGAD---VVLAARTAER---LDEVAAE--------IDD-----LGRRALAVPTD 62 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCCE---EEEEeCCHHH---HHHHHHH--------HHH-----hCCceEEEecC
Confidence 456899999999999999999999999875 8888886421 1112111 110 22468899999
Q ss_pred CCCCCCCCCHHHHHHHh-------ccccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc--CCCceE
Q psy6053 179 AEADELAIKESDRQLLA-------SEVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM--KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~ 241 (614)
+++++ +++.++ .++|+|||+|+... ..+.+...+++|+.|+..+++.+... +...++
T Consensus 63 ~~~~~------~~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i 136 (258)
T PRK07890 63 ITDED------QCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSI 136 (258)
T ss_pred CCCHH------HHHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEE
Confidence 99865 555444 35799999998632 12556778999999999999998752 123589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ..+.|+.+|...|.+++.... .+++
T Consensus 137 i~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~ 178 (258)
T PRK07890 137 VMINSMVLRHSQP--------------------------------------KYGAYKMAKGALLAASQSLATELGPQGIR 178 (258)
T ss_pred EEEechhhccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 9999986532110 016899999999999988764 4899
Q ss_pred EEEeecceeecccCCCCccccCCCC--chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNIN--GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~--g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++++|||.|+++...+...+..... ....+.....+. .....+.+++|+|++++.++..... ...++
T Consensus 179 v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~dva~a~~~l~~~~~~--~~~G~ 247 (258)
T PRK07890 179 VNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN---------SDLKRLPTDDEVASAVLFLASDLAR--AITGQ 247 (258)
T ss_pred EEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc---------CCccccCCHHHHHHHHHHHcCHhhh--CccCc
Confidence 9999999998875322111000000 001111111111 1112367889999999888764321 12456
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++.+..+
T Consensus 248 ~i~~~gg 254 (258)
T PRK07890 248 TLDVNCG 254 (258)
T ss_pred EEEeCCc
Confidence 6655544
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=150.77 Aligned_cols=203 Identities=15% Similarity=0.173 Sum_probs=137.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|++|||||||++|++++++|+++ ++ |+++.|+... .+.+.+ ....++++.+|+++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~---V~~~~r~~~~---~~~~~~-----------------~~~~~~~~~~D~~~ 58 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HT---LLLGGRPAER---LDELAA-----------------ELPGATPFPVDLTD 58 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CC---EEEEeCCHHH---HHHHHH-----------------HhccceEEecCCCC
Confidence 578999999999999999999998 65 8999997421 111111 11347889999998
Q ss_pred CCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHH----HHHHHHHHHcCCCceEEEEeCc
Q psy6053 182 DELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGT----KMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt----~~ll~la~~~~~~k~~V~vST~ 247 (614)
++ +++++++ ++|+|||+|+.... .+.+...+++|+.++ +++++.+++ +.+++|++||.
T Consensus 59 ~~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~~~v~~ss~ 130 (227)
T PRK08219 59 PE------AIAAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRA--AHGHVVFINSG 130 (227)
T ss_pred HH------HHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--CCCeEEEEcch
Confidence 65 7777776 58999999987432 134566788999984 455555554 34689999998
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CC-CCEEEeecc
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NG-MPCLMLRPS 324 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~g-lp~~IvRp~ 324 (614)
.+..... ....|+.+|...|.+++.... .+ +++..++||
T Consensus 131 ~~~~~~~--------------------------------------~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg 172 (227)
T PRK08219 131 AGLRANP--------------------------------------GWGSYAASKFALRALADALREEEPGNVRVTSVHPG 172 (227)
T ss_pred HhcCcCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 6543211 015799999999988877654 34 888888888
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
.+.++... .+... .+ .......+++++|+|++++.++.+.. .+.++++.-
T Consensus 173 ~~~~~~~~-------------~~~~~--~~-------~~~~~~~~~~~~dva~~~~~~l~~~~-----~~~~~~~~~ 222 (227)
T PRK08219 173 RTDTDMQR-------------GLVAQ--EG-------GEYDPERYLRPETVAKAVRFAVDAPP-----DAHITEVVV 222 (227)
T ss_pred CccchHhh-------------hhhhh--hc-------cccCCCCCCCHHHHHHHHHHHHcCCC-----CCccceEEE
Confidence 65432110 00000 01 01112457999999999999986543 566777653
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=152.37 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=122.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++++|+||||||+||++++++|+++|++ |+++.|...... ...+++++.+|++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~---V~~~~r~~~~~~------------------------~~~~~~~~~~D~~ 55 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYR---VFGTSRNPARAA------------------------PIPGVELLELDVT 55 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCE---EEEEeCChhhcc------------------------ccCCCeeEEeecC
Confidence 4678999999999999999999999876 888998743211 2246788999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFV 242 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V 242 (614)
+++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++.+ ++ .+.+++|
T Consensus 56 d~~------~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-~~~~~iv 128 (270)
T PRK06179 56 DDA------SVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRA-QGSGRII 128 (270)
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCceEE
Confidence 876 6776665 46999999997532 2456778999999999988875 44 3678999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||.++.... | ....|+.||+..|.+++.... .|+++
T Consensus 129 ~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v 170 (270)
T PRK06179 129 NISSVLGFLPA----------P----------------------------YMALYAASKHAVEGYSESLDHEVRQFGIRV 170 (270)
T ss_pred EECCccccCCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHHhhhCcEE
Confidence 99998653221 1 015799999999988877543 59999
Q ss_pred EEeecceeecccC
Q psy6053 319 LMLRPSIIIPVWR 331 (614)
Q Consensus 319 ~IvRp~~I~g~~~ 331 (614)
++++||.+.++..
T Consensus 171 ~~v~pg~~~t~~~ 183 (270)
T PRK06179 171 SLVEPAYTKTNFD 183 (270)
T ss_pred EEEeCCCcccccc
Confidence 9999999877643
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.4e-15 Score=146.38 Aligned_cols=221 Identities=16% Similarity=0.195 Sum_probs=146.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||++|++++++|++.|++ |+++.|..... .+.+.+. ++ . ...++.++.+|+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~---v~~~~~~~~~~--~~~~~~~--------~~----~-~~~~~~~~~~Dl 64 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN---VVINYASSEAG--AEALVAE--------IG----A-LGGKALAVQGDV 64 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCchhH--HHHHHHH--------HH----h-cCCceEEEEcCC
Confidence 35789999999999999999999999876 77777754311 1111111 11 0 235688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ .+..+++ ++|+|||+|+.... .+.+...+.+|+.++.++++.+... .+.++||
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v 138 (248)
T PRK05557 65 SDAE------SVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRII 138 (248)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9876 5555443 58999999986432 2345677899999999999888752 2456899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.+|...|.+++.... .++++
T Consensus 139 ~iss~~~~~~~~--------------------------------------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~ 180 (248)
T PRK05557 139 NISSVVGLMGNP--------------------------------------GQANYAASKAGVIGFTKSLARELASRGITV 180 (248)
T ss_pred EEcccccCcCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999974422110 015799999999988776543 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+++|||.+.++...+. ..........+. ....+.+++|+++++..++..... ...+++|+
T Consensus 181 ~~v~pg~~~~~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~~ 240 (248)
T PRK05557 181 NAVAPGFIETDMTDAL---------PEDVKEAILAQI---------PLGRLGQPEEIASAVAFLASDEAA--YITGQTLH 240 (248)
T ss_pred EEEecCccCCcccccc---------ChHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcccC--CccccEEE
Confidence 9999998754422211 111111111111 112356889999998877754221 23578999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 241 i~~~ 244 (248)
T PRK05557 241 VNGG 244 (248)
T ss_pred ecCC
Confidence 8765
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=152.49 Aligned_cols=230 Identities=11% Similarity=0.088 Sum_probs=146.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||+|+||+++++.|++.|++ |+++.|+... .+.+.+ .++... ...++.++.+|+++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~---vi~~~r~~~~---~~~~~~--------~~~~~~---~~~~~~~~~~D~~~ 64 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYR---VAVADINSEK---AANVAQ--------EINAEY---GEGMAYGFGADATS 64 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEECCHHH---HHHHHH--------HHHHhc---CCceeEEEEccCCC
Confidence 578999999999999999999999875 7888886432 111111 111111 11468899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~V~ 243 (614)
++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+..+++.+... ++ -.++|+
T Consensus 65 ~~------~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~ 138 (259)
T PRK12384 65 EQ------SVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQ 138 (259)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 65 5554443 57999999986431 2456778899999998887776542 23 358999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... + ....|+.||+..+.+++.... .|+++.
T Consensus 139 ~ss~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~ 180 (259)
T PRK12384 139 INSKSGKVGS----------K----------------------------HNSGYSAAKFGGVGLTQSLALDLAEYGITVH 180 (259)
T ss_pred ecCcccccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEE
Confidence 9997532110 0 015799999998888776653 699999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHh--cCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAG--KGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~--~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++|||.++++.... .. .+ .+..... .+.......+......+++.+|++++++.++.+... ...+.+|
T Consensus 181 ~v~pg~~~~~~~~~------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~--~~~G~~~ 250 (259)
T PRK12384 181 SLMLGNLLKSPMFQ------SL-LP-QYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKAS--YCTGQSI 250 (259)
T ss_pred EEecCCcccchhhh------hh-hH-HHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccc--cccCceE
Confidence 99999887653210 00 00 0000000 000000011222345678899999999888754321 1257899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 251 ~v~~g 255 (259)
T PRK12384 251 NVTGG 255 (259)
T ss_pred EEcCC
Confidence 99887
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-15 Score=148.07 Aligned_cols=227 Identities=18% Similarity=0.174 Sum_probs=143.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||||+||++++++|++.|++ |+++.|+... .++-.++ +.... ....+.++.+|+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~---v~~~~r~~~~--~~~~~~~---------l~~~~---~~~~~~~~~~Dl 64 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI---VIAADIDKEA--LNELLES---------LGKEF---KSKKLSLVELDI 64 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEecChHH--HHHHHHH---------HHhhc---CCCceeEEEecC
Confidence 46899999999999999999999999876 7777876422 1111111 11111 123567789999
Q ss_pred CCCCCCCCHHHHHHHhcc-------ccEEEEcccccC------h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCc
Q psy6053 180 EADELAIKESDRQLLASE-------VDIMIHGAATIR------F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~-------vd~ViH~AA~v~------~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k 239 (614)
++++ ++..++++ +|+|||+|+... + .+.+...+++|+.++..+++.+... .+.+
T Consensus 65 ~d~~------~~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 138 (256)
T PRK09186 65 TDQE------SLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGG 138 (256)
T ss_pred CCHH------HHHHHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 9976 66666553 899999997431 1 2345677888998887666655431 3567
Q ss_pred eEEEEeCceeccCCc-ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 240 LFVHISTAYCHLQEK-VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 240 ~~V~vST~~~~~~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
++|++||.++..... .+.|.. + ...+..|+.||...|.+.+.... .
T Consensus 139 ~iv~~sS~~~~~~~~~~~~~~~---~--------------------------~~~~~~Y~~sK~a~~~l~~~la~e~~~~ 189 (256)
T PRK09186 139 NLVNISSIYGVVAPKFEIYEGT---S--------------------------MTSPVEYAAIKAGIIHLTKYLAKYFKDS 189 (256)
T ss_pred eEEEEechhhhccccchhcccc---c--------------------------cCCcchhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999986543211 111110 0 01124799999999988865544 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
++.+++++||.+.+.. +..+.... ... .....+++++|+|++++.++.+... ...+
T Consensus 190 ~i~v~~i~Pg~~~~~~-------------~~~~~~~~-~~~--------~~~~~~~~~~dva~~~~~l~~~~~~--~~~g 245 (256)
T PRK09186 190 NIRVNCVSPGGILDNQ-------------PEAFLNAY-KKC--------CNGKGMLDPDDICGTLVFLLSDQSK--YITG 245 (256)
T ss_pred CeEEEEEecccccCCC-------------CHHHHHHH-Hhc--------CCccCCCCHHHhhhhHhheeccccc--cccC
Confidence 8999999999775431 11111111 110 0112468999999999998865432 1246
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.++++.++
T Consensus 246 ~~~~~~~g 253 (256)
T PRK09186 246 QNIIVDDG 253 (256)
T ss_pred ceEEecCC
Confidence 67776655
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=150.36 Aligned_cols=223 Identities=13% Similarity=0.102 Sum_probs=148.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||||++|+++++.|++.|++ |+++.|+... ++++.. .+. ...++.++.+|+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~---V~~~~r~~~~------~~~~~~-----~~~------~~~~~~~~~~D~ 62 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR---VVVTDRNEEA------AERVAA-----EIL------AGGRAIAVAADV 62 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHH------HHHHHH-----HHh------cCCeEEEEECCC
Confidence 46789999999999999999999999876 8999997532 111110 111 114588999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.+++ .+|+|||+|+.... .+.++..+++|+.|+.++++.+... .+.++|
T Consensus 63 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~i 136 (251)
T PRK07231 63 SDEA------DVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAI 136 (251)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9976 6666654 46999999986321 2456678999999988777766531 356789
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||...+.+++.... .+++
T Consensus 137 v~~sS~~~~~~~~--------------------------------------~~~~y~~sk~~~~~~~~~~a~~~~~~~i~ 178 (251)
T PRK07231 137 VNVASTAGLRPRP--------------------------------------GLGWYNASKGAVITLTKALAAELGPDKIR 178 (251)
T ss_pred EEEcChhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhhhhCeE
Confidence 9999986643211 015799999998888877654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++.++||.+.++...... .. ..+ ........+ .....+++++|+|++++.++..... ...+..+
T Consensus 179 v~~i~pg~~~t~~~~~~~---~~-~~~-~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~ 242 (251)
T PRK07231 179 VNAVAPVVVETGLLEAFM---GE-PTP-ENRAKFLAT---------IPLGRLGTPEDIANAALFLASDEAS--WITGVTL 242 (251)
T ss_pred EEEEEECccCCCcchhhh---cc-cCh-HHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCcccc--CCCCCeE
Confidence 999999988554321110 00 000 111111111 1123468999999999998854321 1246677
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 243 ~~~gg 247 (251)
T PRK07231 243 VVDGG 247 (251)
T ss_pred EECCC
Confidence 77655
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=154.03 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=114.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|||||||||||++++++|+++|.+ |+++.|.... .++..+. +. . ...++.++.+|+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~---V~~~~r~~~~---~~~~~~~--------~~----~-~~~~~~~~~~D~ 64 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMK---LVLADVQQDA---LDRAVAE--------LR----A-QGAEVLGVRTDV 64 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCE---EEEEeCChHH---HHHHHHH--------HH----h-cCCeEEEEECCC
Confidence 45789999999999999999999999875 7888885421 1222111 00 0 224688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCC----
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKH---- 237 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~---- 237 (614)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++ .+...
T Consensus 65 ~d~~------~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~ 138 (287)
T PRK06194 65 SDAA------QVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPA 138 (287)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9876 6666665 47999999997542 2455667899999999977764 33211
Q ss_pred -CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-C-
Q psy6053 238 -LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-N- 314 (614)
Q Consensus 238 -~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~- 314 (614)
..++|++||.++..... ..+.|+.||+..|.+++.+.. .
T Consensus 139 ~~g~iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~e~~ 180 (287)
T PRK06194 139 YEGHIVNTASMAGLLAPP--------------------------------------AMGIYNVSKHAVVSLTETLYQDLS 180 (287)
T ss_pred CCeEEEEeCChhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHh
Confidence 15899999986643210 015799999999999987654 2
Q ss_pred ----CCCEEEeeccee
Q psy6053 315 ----GMPCLMLRPSII 326 (614)
Q Consensus 315 ----glp~~IvRp~~I 326 (614)
++.+..+.||.|
T Consensus 181 ~~~~~irv~~v~pg~i 196 (287)
T PRK06194 181 LVTDQVGASVLCPYFV 196 (287)
T ss_pred hcCCCeEEEEEEeCcc
Confidence 355556666555
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-15 Score=146.88 Aligned_cols=199 Identities=18% Similarity=0.219 Sum_probs=139.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++++||||||+||++++++|++.|.+ |+++.|+... ..+..+++ . . ...++.++.+|+
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~---Vi~~~r~~~~--~~~~~~~~---------~----~-~~~~~~~~~~D~ 65 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVN---VGLLARTEEN--LKAVAEEV---------E----A-YGVKVVIATADV 65 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCE---EEEEeCCHHH--HHHHHHHH---------H----H-hCCeEEEEECCC
Confidence 45789999999999999999999999875 8888887432 11111111 1 0 224788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ ++..+++ ++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+.+++|
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 139 (239)
T PRK07666 66 SDYE------EVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDII 139 (239)
T ss_pred CCHH------HHHHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEE
Confidence 9876 5655554 68999999986431 2455678999999999998887631 3567899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.+|...+.+++.... .|+++
T Consensus 140 ~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v 181 (239)
T PRK07666 140 NISSTAGQKGAA--------------------------------------VTSAYSASKFGVLGLTESLMQEVRKHNIRV 181 (239)
T ss_pred EEcchhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhhccCcEE
Confidence 999986432210 125799999988888766543 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+++|||.+.++..... +. . ......+++.+|+|+.++.++...
T Consensus 182 ~~v~pg~v~t~~~~~~-------------------~~----~--~~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 182 TALTPSTVATDMAVDL-------------------GL----T--DGNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred EEEecCcccCcchhhc-------------------cc----c--ccCCCCCCCHHHHHHHHHHHHhCC
Confidence 9999998866532110 00 0 001123578999999999988653
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-15 Score=149.25 Aligned_cols=219 Identities=11% Similarity=0.046 Sum_probs=144.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||+|+||||||+||++++++|++.|.+ |+++.|+... ..+..+ + ...++.++.+|
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~---v~~~~~~~~~------~~~~~~------------~-~~~~~~~~~~D 64 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQ---VVLADLDRER------GSKVAK------------A-LGENAWFIAMD 64 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCE---EEEEcCCHHH------HHHHHH------------H-cCCceEEEEcc
Confidence 356899999999999999999999999865 7777775321 111110 0 22467899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh---------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF---------DEALKKAVLLNTRGTKMMLSLAKEM--KHLEL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~ 240 (614)
+++++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+
T Consensus 65 l~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ 138 (255)
T PRK05717 65 VADEA------QVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGA 138 (255)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcE
Confidence 99875 4433332 47999999996531 2446678999999999999999641 22357
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMP 317 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp 317 (614)
+|++||..+.... | ..+.|+.||+..|.+++.... .+++
T Consensus 139 ii~~sS~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~la~~~~~~i~ 180 (255)
T PRK05717 139 IVNLASTRARQSE----------P----------------------------DTEAYAASKGGLLALTHALAISLGPEIR 180 (255)
T ss_pred EEEEcchhhcCCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999988543211 0 125799999999999887765 3689
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+.+++||.|.++..... . ...+ .....+.. + ...+...+|+++++..++..... ...+.++
T Consensus 181 v~~i~Pg~i~t~~~~~~-------~-~~~~-~~~~~~~~------~--~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~ 241 (255)
T PRK05717 181 VNAVSPGWIDARDPSQR-------R-AEPL-SEADHAQH------P--AGRVGTVEDVAAMVAWLLSRQAG--FVTGQEF 241 (255)
T ss_pred EEEEecccCcCCccccc-------c-chHH-HHHHhhcC------C--CCCCcCHHHHHHHHHHHcCchhc--CccCcEE
Confidence 99999999877532100 0 0011 01111110 0 11356789999998877744321 1246677
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 242 ~~~gg 246 (255)
T PRK05717 242 VVDGG 246 (255)
T ss_pred EECCC
Confidence 77665
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-15 Score=149.30 Aligned_cols=204 Identities=17% Similarity=0.177 Sum_probs=138.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++||||||||++|.+++++|++.|++ |.++.|+... . +.+.+. +.. ...++.++.+|+++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~---Vi~~~r~~~~--~-~~~~~~--------l~~-----~~~~~~~~~~Dl~~ 61 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQ---LVLAARNETR--L-ASLAQE--------LAD-----HGGEALVVPTDVSD 61 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCE---EEEEeCCHHH--H-HHHHHH--------HHh-----cCCcEEEEEccCCC
Confidence 468999999999999999999999865 8888886421 1 111111 111 22468889999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~v 244 (614)
++ .+..+++ ++|+|||+|+.... .+.+...+++|+.|+.++++.+... .+..++|++
T Consensus 62 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~ 135 (263)
T PRK06181 62 AE------ACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVV 135 (263)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 66 5555554 68999999986432 1235667899999999999988531 244689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||...|.+.+.... .++++.+
T Consensus 136 sS~~~~~~~~--------------------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~ 177 (263)
T PRK06181 136 SSLAGLTGVP--------------------------------------TRSGYAASKHALHGFFDSLRIELADDGVAVTV 177 (263)
T ss_pred ecccccCCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHhhhcCceEEE
Confidence 9986532110 015799999999988876543 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
++||.|..+..... ... .+... ...+....++++++|+|++++.++..
T Consensus 178 i~pg~v~t~~~~~~-------~~~--------~~~~~--~~~~~~~~~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 178 VCPGFVATDIRKRA-------LDG--------DGKPL--GKSPMQESKIMSAEECAEAILPAIAR 225 (263)
T ss_pred EecCccccCcchhh-------ccc--------ccccc--ccccccccCCCCHHHHHHHHHHHhhC
Confidence 99998865532110 000 01100 01112223789999999999988864
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-15 Score=148.85 Aligned_cols=217 Identities=15% Similarity=0.198 Sum_probs=148.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++++||||+|++|+++++.|++.|++ |+++.|+.. +++++.+ ..+..++.+|+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~---V~~~~r~~~------~~~~~~~---------------~~~~~~~~~D~ 62 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGAR---VVAAARNAA------ALDRLAG---------------ETGCEPLRLDV 62 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH---------------HhCCeEEEecC
Confidence 46789999999999999999999999875 888888642 2222110 01346788999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---C-CCceEEEEe
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---K-HLELFVHIS 245 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~-~~k~~V~vS 245 (614)
+++. ++..+++ .+|+|||+|+.... .+.++..+++|+.|+.++++.+.+. + ...++|++|
T Consensus 63 ~~~~------~v~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s 136 (245)
T PRK07060 63 GDDA------AIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVS 136 (245)
T ss_pred CCHH------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEc
Confidence 9865 5555554 58999999997532 2456677889999999999888753 1 136899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|..+..... ....|+.||...|.+++.+.. .+++++.+
T Consensus 137 S~~~~~~~~--------------------------------------~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v 178 (245)
T PRK07060 137 SQAALVGLP--------------------------------------DHLAYCASKAALDAITRVLCVELGPHGIRVNSV 178 (245)
T ss_pred cHHHcCCCC--------------------------------------CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEE
Confidence 986532210 025799999999999887764 48999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
|||.+.++.... .|. .+.. ...+... .....+++++|+|+++..++..... ...++++++.+
T Consensus 179 ~pg~v~~~~~~~--~~~----~~~~-~~~~~~~---------~~~~~~~~~~d~a~~~~~l~~~~~~--~~~G~~~~~~~ 240 (245)
T PRK07060 179 NPTVTLTPMAAE--AWS----DPQK-SGPMLAA---------IPLGRFAEVDDVAAPILFLLSDAAS--MVSGVSLPVDG 240 (245)
T ss_pred eeCCCCCchhhh--hcc----CHHH-HHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccC--CccCcEEeECC
Confidence 999998764321 111 1111 1111111 1123478999999999988865432 23577888876
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
+
T Consensus 241 g 241 (245)
T PRK07060 241 G 241 (245)
T ss_pred C
Confidence 5
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=145.43 Aligned_cols=222 Identities=11% Similarity=0.161 Sum_probs=145.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|++|||||+|+||++++++|++.|.+ |+++.|.... +++++.+ .++. ...++.++.+|++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~---v~~~~~~~~~-----~~~~~~~-----~~~~-----~~~~~~~~~~Dl~ 69 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFD---VAVHYNRSRD-----EAEALAA-----EIRA-----LGRRAVALQADLA 69 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCCHH-----HHHHHHH-----HHHh-----cCCeEEEEEcCCC
Confidence 5789999999999999999999999865 6666664321 1211111 1110 2246889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+..+++.+... ..-..+|+
T Consensus 70 d~~------~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 143 (258)
T PRK09134 70 DEA------EVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVN 143 (258)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 866 5555543 47999999986421 2456778999999999999887752 12347788
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLM 320 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~I 320 (614)
+||....... |. ...|+.||...|.+.+..+. .++.++.
T Consensus 144 ~~s~~~~~~~----------p~----------------------------~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~ 185 (258)
T PRK09134 144 MIDQRVWNLN----------PD----------------------------FLSYTLSKAALWTATRTLAQALAPRIRVNA 185 (258)
T ss_pred ECchhhcCCC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 7775432110 10 14799999999999888765 2589999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.+...... .+ ..+.....+.. ......++|+|++++.++.+.. ..++.|++.
T Consensus 186 i~PG~v~t~~~~----------~~-~~~~~~~~~~~---------~~~~~~~~d~a~~~~~~~~~~~----~~g~~~~i~ 241 (258)
T PRK09134 186 IGPGPTLPSGRQ----------SP-EDFARQHAATP---------LGRGSTPEEIAAAVRYLLDAPS----VTGQMIAVD 241 (258)
T ss_pred eecccccCCccc----------Ch-HHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhcCCC----cCCCEEEEC
Confidence 999987543210 01 11111111110 0123678999999999987543 267788888
Q ss_pred cCCcccccHH
Q psy6053 401 SSQEWQVSWQ 410 (614)
Q Consensus 401 ~~~~~~it~~ 410 (614)
++ ..++|.
T Consensus 242 gg--~~~~~~ 249 (258)
T PRK09134 242 GG--QHLAWL 249 (258)
T ss_pred CC--eecccc
Confidence 77 445553
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-15 Score=150.32 Aligned_cols=229 Identities=16% Similarity=0.132 Sum_probs=147.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|++ |+++.|.... .+.+.+. + . ...++.++.+|+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~---v~~~~~~~~~---~~~~~~~--------~-----~-~~~~~~~~~~Dl 75 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAK---VCIVDLQDDL---GQNVCDS--------L-----G-GEPNVCFFHCDV 75 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCE---EEEEeCCHHH---HHHHHHH--------h-----c-CCCceEEEEeec
Confidence 56899999999999999999999999876 7788775321 1111111 0 0 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh---------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF---------DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+-.+
T Consensus 76 ~d~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ 149 (280)
T PLN02253 76 TVED------DVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGS 149 (280)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCce
Confidence 9876 5665554 68999999997421 2456778999999999998877641 12357
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
++++||..+.... ..+..|+.||+..|.+++..+. +|+
T Consensus 150 ii~isS~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi 191 (280)
T PLN02253 150 IVSLCSVASAIGG--------------------------------------LGPHAYTGSKHAVLGLTRSVAAELGKHGI 191 (280)
T ss_pred EEEecChhhcccC--------------------------------------CCCcccHHHHHHHHHHHHHHHHHhhhcCe
Confidence 8999887542110 0125799999999999987655 589
Q ss_pred CEEEeecceeecccCCC-CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 317 PCLMLRPSIIIPVWREP-LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p-~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
.+..++||.|..+.... .++ . ......+...... ...........+.++|+|++++.++..... ...+.
T Consensus 192 ~v~~i~pg~v~t~~~~~~~~~---~-~~~~~~~~~~~~~----~~~~~~l~~~~~~~~dva~~~~~l~s~~~~--~i~G~ 261 (280)
T PLN02253 192 RVNCVSPYAVPTALALAHLPE---D-ERTEDALAGFRAF----AGKNANLKGVELTVDDVANAVLFLASDEAR--YISGL 261 (280)
T ss_pred EEEEEeeCccccccccccccc---c-cchhhhhhhhHHH----hhcCCCCcCCCCCHHHHHHHHHhhcCcccc--cccCc
Confidence 99999999987653211 110 0 0001111110000 000000011236789999999888754321 12567
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 262 ~i~vdgG 268 (280)
T PLN02253 262 NLMIDGG 268 (280)
T ss_pred EEEECCc
Confidence 7888766
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=145.21 Aligned_cols=220 Identities=14% Similarity=0.124 Sum_probs=148.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|++|||||+|++|..++++|++.|++ |+++.|.. +. . ...++.++.+|+
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~---v~~~~~~~--------~~----------------~-~~~~~~~~~~D~ 57 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAK---VIGFDQAF--------LT----------------Q-EDYPFATFVLDV 57 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEecch--------hh----------------h-cCCceEEEEecC
Confidence 56799999999999999999999999876 88888864 00 0 234688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++++++ .+|+|||+|+.... .+.++..+++|+.++..+++.+... .+..++|
T Consensus 58 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 131 (252)
T PRK08220 58 SDAA------AVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIV 131 (252)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9876 6666654 37999999997532 2456778999999999999887531 2345899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..|.+++.... .|+++
T Consensus 132 ~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 173 (252)
T PRK08220 132 TVGSNAAHVPRI--------------------------------------GMAAYGASKAALTSLAKCVGLELAPYGVRC 173 (252)
T ss_pred EECCchhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhhHhCeEE
Confidence 999975432110 016799999999999877664 58999
Q ss_pred EEeecceeecccCCCCccccC-CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTD-NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d-~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++||.|.++....+..... ......+....... ......++.++|+|++++.++..... ...+.+.
T Consensus 174 ~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~i 242 (252)
T PRK08220 174 NVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKL---------GIPLGKIARPQEIANAVLFLASDLAS--HITLQDI 242 (252)
T ss_pred EEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhh---------cCCCcccCCHHHHHHHHHHHhcchhc--CccCcEE
Confidence 999999998875321100000 00000000111111 11223578899999999988854321 1245566
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 243 ~~~gg 247 (252)
T PRK08220 243 VVDGG 247 (252)
T ss_pred EECCC
Confidence 55554
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=146.43 Aligned_cols=224 Identities=15% Similarity=0.105 Sum_probs=144.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|++|||||+|+||.++++.|++.|++ |+.+.|+... .+.+.+. +.. ...++.++.+|+
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~---V~~~~r~~~~---~~~~~~~--------i~~-----~~~~~~~~~~Dl 70 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGAR---VVLSARKAEE---LEEAAAH--------LEA-----LGIDALWIAADV 70 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCE---EEEEeCCHHH---HHHHHHH--------HHh-----cCCeEEEEEccC
Confidence 46799999999999999999999999875 8888886421 1111111 110 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc----CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM----KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 241 (614)
++++ +++.+++ .+|+|||+|+... ..+.++..+++|+.|+.++++++... ++..+|
T Consensus 71 ~d~~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~ 144 (259)
T PRK08213 71 ADEA------DIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRI 144 (259)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEE
Confidence 9876 5544433 5899999998642 13456678899999999999987653 245789
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+....... + .....|+.+|+..|.+++.... .|++
T Consensus 145 v~~sS~~~~~~~~~~----~------------------------------~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~ 190 (259)
T PRK08213 145 INVASVAGLGGNPPE----V------------------------------MDTIAYNTSKGAVINFTRALAAEWGPHGIR 190 (259)
T ss_pred EEECChhhccCCCcc----c------------------------------cCcchHHHHHHHHHHHHHHHHHHhcccCEE
Confidence 999997543321100 0 0016899999999999988755 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+.+++||.+-.+.... . ...+......+.. ..-+...+++++++..++..... ...+.++
T Consensus 191 v~~v~Pg~~~t~~~~~-------~--~~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~--~~~G~~~ 250 (259)
T PRK08213 191 VNAIAPGFFPTKMTRG-------T--LERLGEDLLAHTP---------LGRLGDDEDLKGAALLLASDASK--HITGQIL 250 (259)
T ss_pred EEEEecCcCCCcchhh-------h--hHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCcccc--CccCCEE
Confidence 9999998774432110 0 0111111111110 11133578888887777644321 1256677
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 251 ~~~~~ 255 (259)
T PRK08213 251 AVDGG 255 (259)
T ss_pred EECCC
Confidence 77655
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=144.76 Aligned_cols=221 Identities=15% Similarity=0.189 Sum_probs=141.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++++||||||+||++++++|++.|.. |+...|... ++.++.. +.++. ...++.++.+|+++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~---vv~~~~~~~-----~~~~~~~-----~~l~~-----~~~~~~~~~~Dl~~ 63 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYA---VCLNYLRNR-----DAAEAVV-----QAIRR-----QGGEALAVAADVAD 63 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCe---EEEecCCCH-----HHHHHHH-----HHHHh-----CCCcEEEEEeccCC
Confidence 468999999999999999999999876 544443321 1122111 11111 22457889999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHcC------CCce
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEMK------HLEL 240 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~~------~~k~ 240 (614)
+. .++++++ .+|+|||+|+... + .+.+...+++|+.|+.++++.+...- .-.+
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~ 137 (248)
T PRK06123 64 EA------DVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGA 137 (248)
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeE
Confidence 65 5665554 5899999998642 1 23456789999999999988876520 1236
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.... |. ....|+.||+..|.+++..+. +|+
T Consensus 138 iv~~sS~~~~~~~----------~~---------------------------~~~~Y~~sKaa~~~~~~~la~~~~~~~i 180 (248)
T PRK06123 138 IVNVSSMAARLGS----------PG---------------------------EYIDYAASKGAIDTMTIGLAKEVAAEGI 180 (248)
T ss_pred EEEECchhhcCCC----------CC---------------------------CccchHHHHHHHHHHHHHHHHHhcccCe
Confidence 9999998542211 00 013599999999998877654 489
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++++|||.|+++.... . ..+ ..+....... + - .-...++|++++++.++..... ...+.+
T Consensus 181 ~v~~i~pg~v~~~~~~~------~-~~~-~~~~~~~~~~-p------~--~~~~~~~d~a~~~~~l~~~~~~--~~~g~~ 241 (248)
T PRK06123 181 RVNAVRPGVIYTEIHAS------G-GEP-GRVDRVKAGI-P------M--GRGGTAEEVARAILWLLSDEAS--YTTGTF 241 (248)
T ss_pred EEEEEecCcccCchhhc------c-CCH-HHHHHHHhcC-C------C--CCCcCHHHHHHHHHHHhCcccc--CccCCE
Confidence 99999999998874321 0 111 1111111111 0 0 0123679999999987764321 125778
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
|++.++
T Consensus 242 ~~~~gg 247 (248)
T PRK06123 242 IDVSGG 247 (248)
T ss_pred EeecCC
Confidence 888754
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=149.87 Aligned_cols=224 Identities=15% Similarity=0.093 Sum_probs=151.5
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
...++|+||||||+|+||.+++++|++.|.+ |++..|.... ..+.+.+.++ . ...++.++.+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~---V~l~~r~~~~--~~~~~~~~~~------------~-~~~~~~~~~~ 103 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGAD---IAIVYLDEHE--DANETKQRVE------------K-EGVKCLLIPG 103 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCcch--HHHHHHHHHH------------h-cCCeEEEEEc
Confidence 3456899999999999999999999999876 7777776422 1122222111 0 2246889999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceE
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELF 241 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~ 241 (614)
|+++.+ .++.+++ ++|+|||+|+.... .+.+...+++|+.|+.++++.+... ....++
T Consensus 104 Dl~~~~------~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~i 177 (290)
T PRK06701 104 DVSDEA------FCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAI 177 (290)
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeE
Confidence 999865 5555543 57999999986421 2445678999999999999998762 233589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+++..+. .|++
T Consensus 178 V~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~l~~~la~~~~~~gIr 219 (290)
T PRK06701 178 INTGSITGYEGNE--------------------------------------TLIDYSATKGAIHAFTRSLAQSLVQKGIR 219 (290)
T ss_pred EEEecccccCCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999986543211 014799999999998887776 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++.++||.|..+.... . ..+ ........ ......+..++|+|++++.++..... ...+.++
T Consensus 220 v~~i~pG~v~T~~~~~------~-~~~-~~~~~~~~---------~~~~~~~~~~~dva~~~~~ll~~~~~--~~~G~~i 280 (290)
T PRK06701 220 VNAVAPGPIWTPLIPS------D-FDE-EKVSQFGS---------NTPMQRPGQPEELAPAYVFLASPDSS--YITGQML 280 (290)
T ss_pred EEEEecCCCCCccccc------c-cCH-HHHHHHHh---------cCCcCCCcCHHHHHHHHHHHcCcccC--CccCcEE
Confidence 9999999887653211 0 011 11111111 11224467889999999988765421 1256788
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 281 ~idgg 285 (290)
T PRK06701 281 HVNGG 285 (290)
T ss_pred EeCCC
Confidence 88765
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=142.80 Aligned_cols=208 Identities=18% Similarity=0.165 Sum_probs=140.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+++|+||||||++|+++++.|++.|.+ |++++|.... .+++.+. +. + . .++.++.+|++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~---V~~~~r~~~~---~~~~~~~--------l~----~-~-~~~~~~~~D~~ 64 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYK---VAITARDQKE---LEEAAAE--------LN----N-K-GNVLGLAADVR 64 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCE---EEEeeCCHHH---HHHHHHH--------Hh----c-c-CcEEEEEccCC
Confidence 4689999999999999999999998765 8899986421 1122111 11 1 1 46889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~v 244 (614)
+++ ++..+++ ++|+|||+|+.... .+.+...+++|+.|+.++++.+... .+.+++|++
T Consensus 65 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ 138 (237)
T PRK07326 65 DEA------DVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINI 138 (237)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEE
Confidence 865 5555444 68999999986532 3445677899999999998887642 244679999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.+|+..+.+.+.... .|+++++
T Consensus 139 ss~~~~~~~~--------------------------------------~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~ 180 (237)
T PRK07326 139 SSLAGTNFFA--------------------------------------GGAAYNASKFGLVGFSEAAMLDLRQYGIKVST 180 (237)
T ss_pred CChhhccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 9986432110 015799999988887776542 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+|||.+..+.....+ .. .....+..+|+++.++.++..+.. .-.....+.
T Consensus 181 v~pg~~~t~~~~~~~-------------------------~~--~~~~~~~~~d~a~~~~~~l~~~~~---~~~~~~~~~ 230 (237)
T PRK07326 181 IMPGSVATHFNGHTP-------------------------SE--KDAWKIQPEDIAQLVLDLLKMPPR---TLPSKIEVR 230 (237)
T ss_pred EeeccccCccccccc-------------------------ch--hhhccCCHHHHHHHHHHHHhCCcc---ccccceEEe
Confidence 999988554211000 00 001136789999999998876542 233445555
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 231 ~~ 232 (237)
T PRK07326 231 PS 232 (237)
T ss_pred cC
Confidence 44
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=144.47 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=148.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||+|+||++++++|++.|++ |+++.|+... ..+..+++ +. ...++.++.+|+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~---v~~~~r~~~~--~~~~~~~~---------~~-----~~~~~~~~~~Dl 65 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT---VAFNDGLAAE--ARELAAAL---------EA-----AGGRAHAIAADL 65 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE---EEEEeCCHHH--HHHHHHHH---------Hh-----cCCcEEEEEccC
Confidence 45799999999999999999999999876 7777775321 11111111 10 224688999999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.++ .++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 139 (250)
T PRK12939 66 ADPA------SVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIV 139 (250)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9866 555555 358999999997431 2456677899999999999887642 1234899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.+|...|.+++.... .++++
T Consensus 140 ~isS~~~~~~~~--------------------------------------~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v 181 (250)
T PRK12939 140 NLASDTALWGAP--------------------------------------KLGAYVASKGAVIGMTRSLARELGGRGITV 181 (250)
T ss_pred EECchhhccCCC--------------------------------------CcchHHHHHHHHHHHHHHHHHHHhhhCEEE
Confidence 999975432110 014699999999999887653 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+.++||.+..+..... ...........+ .....+++++|+|++++.++..... ...+++++
T Consensus 182 ~~v~pg~v~t~~~~~~--------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~i~ 242 (250)
T PRK12939 182 NAIAPGLTATEATAYV--------PADERHAYYLKG---------RALERLQVPDDVAGAVLFLLSDAAR--FVTGQLLP 242 (250)
T ss_pred EEEEECCCCCcccccc--------CChHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccc--CccCcEEE
Confidence 9999998755432111 000111111111 1223468899999999998865321 13577888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 243 ~~gg 246 (250)
T PRK12939 243 VNGG 246 (250)
T ss_pred ECCC
Confidence 8766
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=143.30 Aligned_cols=161 Identities=19% Similarity=0.264 Sum_probs=121.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+++|+||||||++|+++++.|++.|++ +|+++.|+.+.. ++ ...++.++.+|+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~--~V~~~~r~~~~~------~~-----------------~~~~~~~~~~D~ 58 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAA--KVYAAARDPESV------TD-----------------LGPRVVPLQLDV 58 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcc--cEEEEecChhhh------hh-----------------cCCceEEEEecC
Confidence 35789999999999999999999999872 388888875321 10 114688999999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccc-cC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEe
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAAT-IR-------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHIS 245 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~-v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vS 245 (614)
++++ +++.+.+ .+|+|||+|+. .. ..+.+...+++|+.++.++++++... .+..+++++|
T Consensus 59 ~~~~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~s 132 (238)
T PRK08264 59 TDPA------SVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVL 132 (238)
T ss_pred CCHH------HHHHHHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 9876 6666665 58999999997 21 13456678899999999999887531 2456899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|..+.... ...+.|+.||..+|.+...... .+++++++
T Consensus 133 S~~~~~~~--------------------------------------~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v 174 (238)
T PRK08264 133 SVLSWVNF--------------------------------------PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGV 174 (238)
T ss_pred ChhhccCC--------------------------------------CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 98653211 0125799999999998887654 48999999
Q ss_pred ecceeecc
Q psy6053 322 RPSIIIPV 329 (614)
Q Consensus 322 Rp~~I~g~ 329 (614)
|||.+.++
T Consensus 175 ~pg~v~t~ 182 (238)
T PRK08264 175 HPGPIDTD 182 (238)
T ss_pred eCCccccc
Confidence 99988654
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=142.72 Aligned_cols=219 Identities=15% Similarity=0.137 Sum_probs=145.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|++ |+++.|+.. ....+++++ ...++.++.+|+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~---vi~~~r~~~-~~~~~~~~~-----------------~~~~~~~~~~D~ 61 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGAD---IVGAGRSEP-SETQQQVEA-----------------LGRRFLSLTADL 61 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCchH-HHHHHHHHh-----------------cCCceEEEECCC
Confidence 46899999999999999999999999876 888888542 111111111 224688999999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~ 241 (614)
++++ ++..++ .++|+|||+||.... .+.++..+++|+.|+.++++.+... ++ ..++
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~i 135 (248)
T TIGR01832 62 SDIE------AIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKI 135 (248)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9976 555443 358999999997531 2456778999999999999887541 12 4689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+++..+. +|++
T Consensus 136 v~~sS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~ 177 (248)
T TIGR01832 136 INIASMLSFQGGI--------------------------------------RVPSYTASKHGVAGLTKLLANEWAAKGIN 177 (248)
T ss_pred EEEecHHhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhCccCcE
Confidence 9999986543210 014799999999998887765 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++.++||.|..+..... ...........+ . . ....++..+|+|++++.++..... ...+.++
T Consensus 178 v~~v~pg~v~t~~~~~~-------~~~~~~~~~~~~-~---~-----~~~~~~~~~dva~~~~~l~s~~~~--~~~G~~i 239 (248)
T TIGR01832 178 VNAIAPGYMATNNTQAL-------RADEDRNAAILE-R---I-----PAGRWGTPDDIGGPAVFLASSASD--YVNGYTL 239 (248)
T ss_pred EEEEEECcCcCcchhcc-------ccChHHHHHHHh-c---C-----CCCCCcCHHHHHHHHHHHcCcccc--CcCCcEE
Confidence 99999998865532111 000011011111 1 1 113578899999999888854321 1235555
Q ss_pred Eecc
Q psy6053 398 HLTS 401 (614)
Q Consensus 398 ni~~ 401 (614)
.+.+
T Consensus 240 ~~dg 243 (248)
T TIGR01832 240 AVDG 243 (248)
T ss_pred EeCC
Confidence 5543
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-14 Score=144.48 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=147.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |++..|+.+... .+.+.+... . ...++.++.+|+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~---Vi~~~~~~~~~~-~~~~~~~~~------------~-~~~~~~~~~~Dl 109 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGAD---VAISYLPVEEED-AQDVKKIIE------------E-CGRKAVLLPGDL 109 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCE---EEEecCCcchhh-HHHHHHHHH------------H-cCCeEEEEEccC
Confidence 57899999999999999999999999976 666666543221 222332211 1 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~ 243 (614)
++++ ++..+++ ++|++||+|+... + .+.+...+++|+.|+..+++.+... ..-.++|+
T Consensus 110 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~ 183 (294)
T PRK07985 110 SDEK------FARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIIT 183 (294)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEE
Confidence 9865 4544433 5799999998531 1 2456778999999999999988752 22358999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+..+.+++..+. +|+++.
T Consensus 184 iSS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn 225 (294)
T PRK07985 184 TSSIQAYQPSP--------------------------------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVN 225 (294)
T ss_pred ECCchhccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHHhHhCcEEE
Confidence 99986543210 015799999998888776654 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.|.++.... + ..+........... ....+...+|+|++++.++..... -..+.++.+
T Consensus 226 ~i~PG~v~t~~~~~--~-----~~~~~~~~~~~~~~---------~~~r~~~pedva~~~~fL~s~~~~--~itG~~i~v 287 (294)
T PRK07985 226 IVAPGPIWTALQIS--G-----GQTQDKIPQFGQQT---------PMKRAGQPAELAPVYVYLASQESS--YVTAEVHGV 287 (294)
T ss_pred EEECCcCccccccc--c-----CCCHHHHHHHhccC---------CCCCCCCHHHHHHHHHhhhChhcC--CccccEEee
Confidence 99999998764311 0 00111211111110 011245678999999888754321 125677777
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 288 dgG 290 (294)
T PRK07985 288 CGG 290 (294)
T ss_pred CCC
Confidence 665
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=145.15 Aligned_cols=160 Identities=14% Similarity=0.211 Sum_probs=116.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||++|++++++|++.|++ |+++.|++. +++++.+ . ...++.++.+|++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~~---------~----~~~~~~~~~~Dl~~~ 58 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHK---VIATGRRQE------RLQELKD---------E----LGDNLYIAQLDVRNR 58 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCE---EEEEECCHH------HHHHHHH---------H----hccceEEEEecCCCH
Confidence 57999999999999999999999876 888888642 2222211 0 123688899999986
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEEE
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLA----KEMKHLELFVH 243 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V~ 243 (614)
+ +++.+++ ++|+|||+||... ..+.++..+++|+.|+..+++.+ ++ .+..++|+
T Consensus 59 ~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~ 131 (248)
T PRK10538 59 A------AIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVE-RNHGHIIN 131 (248)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEE
Confidence 5 5554443 6899999998531 13456778999999976666554 44 35678999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... + ..+.|+.||...|.+.+.... .++.+.
T Consensus 132 isS~~~~~~~----------~----------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~ 173 (248)
T PRK10538 132 IGSTAGSWPY----------A----------------------------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVT 173 (248)
T ss_pred ECCcccCCCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 9997643110 0 015899999999999877654 589999
Q ss_pred Eeecceeecc
Q psy6053 320 MLRPSIIIPV 329 (614)
Q Consensus 320 IvRp~~I~g~ 329 (614)
+++||.+.|+
T Consensus 174 ~v~pg~i~~~ 183 (248)
T PRK10538 174 DIEPGLVGGT 183 (248)
T ss_pred EEeCCeeccc
Confidence 9999999765
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=151.30 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=119.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||||+||.+++++|++.|++ |+++.|+.. +.++..+ ...++.++.+|+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~---Vv~~~R~~~------~~~~~~~--------------~l~~v~~~~~Dl 80 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAH---VIVPARRPD------VAREALA--------------GIDGVEVVMLDL 80 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH--------------HhhhCeEEEccC
Confidence 46799999999999999999999999876 888888632 2222211 112377899999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-----hHHHHHHHHHhHHHHHHHHH----HHHHcCCCceEEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-----DEALKKAVLLNTRGTKMMLS----LAKEMKHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~----la~~~~~~k~~V~ 243 (614)
++++ +++.++ .++|+|||+||.... .+.++..+++|+.|+..+++ .+++ .+..++|+
T Consensus 81 ~d~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~-~~~~~iV~ 153 (315)
T PRK06196 81 ADLE------SVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAA-GAGARVVA 153 (315)
T ss_pred CCHH------HHHHHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCeEEE
Confidence 9865 555554 358999999996421 23466778999999665555 4444 24468999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..........++..+..+. .....|+.||...+.+.+.... .|++++
T Consensus 154 vSS~~~~~~~~~~~~~~~~~~~--------------------------~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~ 207 (315)
T PRK06196 154 LSSAGHRRSPIRWDDPHFTRGY--------------------------DKWLAYGQSKTANALFAVHLDKLGKDQGVRAF 207 (315)
T ss_pred ECCHHhccCCCCccccCccCCC--------------------------ChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 9997532211111100000010 0015799999999988766643 589999
Q ss_pred EeecceeecccC
Q psy6053 320 MLRPSIIIPVWR 331 (614)
Q Consensus 320 IvRp~~I~g~~~ 331 (614)
++|||.|.++..
T Consensus 208 ~v~PG~v~t~~~ 219 (315)
T PRK06196 208 SVHPGGILTPLQ 219 (315)
T ss_pred EeeCCcccCCcc
Confidence 999999987643
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-14 Score=143.94 Aligned_cols=191 Identities=16% Similarity=0.127 Sum_probs=133.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||||+||+.++++|++.|++ |+++.|.. +++++..+ +.+. . .++.++.+|+++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~---v~~~~r~~------~~~~~~~~---------~~~~-~-~~~~~~~~Dl~~ 61 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGAT---LGLVARRT------DALQAFAA---------RLPK-A-ARVSVYAADVRD 61 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------hccc-C-CeeEEEEcCCCC
Confidence 478999999999999999999999875 88888863 22322211 1111 1 278899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHH----HHHcCCCceEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSL----AKEMKHLELFV 242 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~l----a~~~~~~k~~V 242 (614)
++ ++.++++ .+|++||+||.... .+.++..+++|+.|+.++++. +++ .+..++|
T Consensus 62 ~~------~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~-~~~~~iv 134 (257)
T PRK07024 62 AD------ALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRA-ARRGTLV 134 (257)
T ss_pred HH------HHHHHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHh-cCCCEEE
Confidence 76 5555543 37999999986431 145677899999999998773 334 3557899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..|.+++..+. .|+++
T Consensus 135 ~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v 176 (257)
T PRK07024 135 GIASVAGVRGL----------P----------------------------GAGAYSASKAAAIKYLESLRVELRPAGVRV 176 (257)
T ss_pred EEechhhcCCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHhhccCcEE
Confidence 99998653211 1 015799999999999877642 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
+++|||.|.++.... + + ...-.+++.+++|+.++.++.+
T Consensus 177 ~~v~Pg~v~t~~~~~------~-------------~---------~~~~~~~~~~~~a~~~~~~l~~ 215 (257)
T PRK07024 177 VTIAPGYIRTPMTAH------N-------------P---------YPMPFLMDADRFAARAARAIAR 215 (257)
T ss_pred EEEecCCCcCchhhc------C-------------C---------CCCCCccCHHHHHHHHHHHHhC
Confidence 999999986642110 0 0 0000136889999999888753
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-14 Score=143.48 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=144.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++|+||||+|+||++++++|++.|++ |+++.|+... ...+..+++ . . ...++.++.+|+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~---v~~~~~~~~~-~~~~~~~~~---------~----~-~~~~~~~~~~Dl 64 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA---VAVNYAGSAA-AADELVAEI---------E----A-AGGRAIAVQADV 64 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEecCCCHH-HHHHHHHHH---------H----h-cCCeEEEEECCC
Confidence 35789999999999999999999999876 6565664321 111111111 1 1 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++.+.+. ....++|++
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 138 (245)
T PRK12937 65 ADAA------AVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINL 138 (245)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEE
Confidence 9876 6666554 58999999997532 3456678899999999999888652 223589999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||....... | ..+.|+.+|...|.+++.... .++.+++
T Consensus 139 ss~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~ 180 (245)
T PRK12937 139 STSVIALPL----------P----------------------------GYGPYAASKAAVEGLVHVLANELRGRGITVNA 180 (245)
T ss_pred eeccccCCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 987542211 0 026799999999999887654 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.+-.+... +. ..+ .....+.... ...-+.+++|++++++.++..... ...+.++++.
T Consensus 181 i~pg~~~t~~~~------~~-~~~-~~~~~~~~~~---------~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~~~ 241 (245)
T PRK12937 181 VAPGPVATELFF------NG-KSA-EQIDQLAGLA---------PLERLGTPEEIAAAVAFLAGPDGA--WVNGQVLRVN 241 (245)
T ss_pred EEeCCccCchhc------cc-CCH-HHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCcccc--CccccEEEeC
Confidence 999987544210 00 011 1111221111 011234679999998887754321 1256788876
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 242 ~g 243 (245)
T PRK12937 242 GG 243 (245)
T ss_pred CC
Confidence 54
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-14 Score=142.02 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=145.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC-CCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK-KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~-~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+|+||||+|+||.+++++|++.|++ |+++.+.. +.....+++.+.+ .. ...++..+.+|
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~---vv~i~~~~~~~~~~~~~~~~~l--------~~-----~~~~~~~~~~D 69 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAK---AVAIHYNSAASKADAEETVAAV--------KA-----AGAKAVAFQAD 69 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCc---EEEEecCCccchHHHHHHHHHH--------HH-----hCCcEEEEecC
Confidence 46789999999999999999999999876 55665543 2222222222111 10 22468889999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-cCCCceEEE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-MKHLELFVH 243 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~V~ 243 (614)
+++++ +++++++ ++|++||+||.... .+.++..+++|+.|+..+++.+.. +....++++
T Consensus 70 ~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 70 LTTAA------AVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred cCCHH------HHHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 99876 5655543 57999999996321 235677899999999999988865 222346776
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
++|..+.... +....|+.||+..|.+++..+. .|++++
T Consensus 144 ~~ss~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~ 185 (257)
T PRK12744 144 LVTSLLGAFT--------------------------------------PFYSAYAGSKAPVEHFTRAASKEFGARGISVT 185 (257)
T ss_pred EecchhcccC--------------------------------------CCcccchhhHHHHHHHHHHHHHHhCcCceEEE
Confidence 6433221110 0126899999999999988865 479999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.+.++...+.. .+.... .... .. ...+.....+.+++|+|+++..++.... ...+.++++
T Consensus 186 ~v~pg~v~t~~~~~~~-------~~~~~~--~~~~-~~--~~~~~~~~~~~~~~dva~~~~~l~~~~~---~~~g~~~~~ 250 (257)
T PRK12744 186 AVGPGPMDTPFFYPQE-------GAEAVA--YHKT-AA--ALSPFSKTGLTDIEDIVPFIRFLVTDGW---WITGQTILI 250 (257)
T ss_pred EEecCccccchhcccc-------ccchhh--cccc-cc--cccccccCCCCCHHHHHHHHHHhhcccc---eeecceEee
Confidence 9999999765332210 111000 0000 00 0111112247789999999999887421 124678888
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 251 ~gg 253 (257)
T PRK12744 251 NGG 253 (257)
T ss_pred cCC
Confidence 766
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=142.68 Aligned_cols=219 Identities=15% Similarity=0.131 Sum_probs=139.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
++|+||||||+||.+++++|++.|++ |.++ .|+.. ...+...++ . . ...++..+.+|+++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~---v~~~~~~~~~--~~~~~~~~~---------~----~-~~~~~~~~~~D~~d 62 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYT---VAVNYQQNLH--AAQEVVNLI---------T----Q-AGGKAFVLQADISD 62 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCChH--HHHHHHHHH---------H----h-CCCeEEEEEccCCC
Confidence 58999999999999999999999876 5554 34321 111111111 1 0 22467889999999
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc------CCCce
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM------KHLEL 240 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~------~~~k~ 240 (614)
++ +++.+++ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..+
T Consensus 63 ~~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~ 136 (247)
T PRK09730 63 EN------QVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGA 136 (247)
T ss_pred HH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 76 5666554 46899999996421 2345678999999998887765442 11346
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
||++||..+.... |. ....|+.+|...|.+++.... .++
T Consensus 137 ~v~~sS~~~~~~~----------~~---------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i 179 (247)
T PRK09730 137 IVNVSSAASRLGA----------PG---------------------------EYVDYAASKGAIDTLTTGLSLEVAAQGI 179 (247)
T ss_pred EEEECchhhccCC----------CC---------------------------cccchHhHHHHHHHHHHHHHHHHHHhCe
Confidence 9999998542211 00 014699999999988876543 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++++|||.++++.... .+..........+.. -. -..+.+|+|++++.++..... ...+.+
T Consensus 180 ~v~~i~pg~~~~~~~~~--------~~~~~~~~~~~~~~~-------~~--~~~~~~dva~~~~~~~~~~~~--~~~g~~ 240 (247)
T PRK09730 180 RVNCVRPGFIYTEMHAS--------GGEPGRVDRVKSNIP-------MQ--RGGQPEEVAQAIVWLLSDKAS--YVTGSF 240 (247)
T ss_pred EEEEEEeCCCcCccccc--------CCCHHHHHHHHhcCC-------CC--CCcCHHHHHHHHHhhcChhhc--CccCcE
Confidence 99999999999875321 111112222221110 00 123689999999888765321 124567
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 241 ~~~~g~ 246 (247)
T PRK09730 241 IDLAGG 246 (247)
T ss_pred EecCCC
Confidence 766553
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=143.19 Aligned_cols=200 Identities=12% Similarity=0.051 Sum_probs=137.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+++||||||++|..++++|+++|.+ |+++.|+... .+.+.+.. + . ...++.++.+|++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~---V~~~~r~~~~---~~~~~~~~--------~----~-~~~~~~~~~~D~~ 65 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWD---LALVARSQDA---LEALAAEL--------R----S-TGVKAAAYSIDLS 65 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHH--------H----h-CCCcEEEEEccCC
Confidence 4689999999999999999999999875 8999996421 11222111 1 1 2246889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+++ ++..+++ ++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 66 ~~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~ 139 (241)
T PRK07454 66 NPE------AIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIIN 139 (241)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 876 5555443 48999999986432 2456677899999988887776331 34578999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||...+.+++.... .|++++
T Consensus 140 isS~~~~~~~~--------------------------------------~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~ 181 (241)
T PRK07454 140 VSSIAARNAFP--------------------------------------QWGAYCVSKAALAAFTKCLAEEERSHGIRVC 181 (241)
T ss_pred EccHHhCcCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHhhhhCCEEE
Confidence 99986543210 015799999999988876543 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
++|||.+-.+... +. .... .....-.++.+|+|++++.++..+.
T Consensus 182 ~i~pg~i~t~~~~------~~--------------~~~~----~~~~~~~~~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 182 TITLGAVNTPLWD------TE--------------TVQA----DFDRSAMLSPEQVAQTILHLAQLPP 225 (241)
T ss_pred EEecCcccCCccc------cc--------------cccc----ccccccCCCHHHHHHHHHHHHcCCc
Confidence 9999988554211 00 0000 0001235799999999999886553
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=148.37 Aligned_cols=158 Identities=17% Similarity=0.237 Sum_probs=117.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||||+||++++++|++.|++ |+++.|+.. +++++ ...++.++.+|+++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~---Vi~~~r~~~------~~~~l----------------~~~~~~~~~~Dl~d 58 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWR---VFATCRKEE------DVAAL----------------EAEGLEAFQLDYAE 58 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCHH------HHHHH----------------HHCCceEEEccCCC
Confidence 578999999999999999999999875 888888642 22222 11357788999998
Q ss_pred CCCCCCHHHHHHHhc--------cccEEEEcccccCh-------hHHHHHHHHHhHHH----HHHHHHHHHHcCCCceEE
Q psy6053 182 DELAIKESDRQLLAS--------EVDIMIHGAATIRF-------DEALKKAVLLNTRG----TKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~g----t~~ll~la~~~~~~k~~V 242 (614)
++ +++.+++ ++|+|||+||.... .+.++..+++|+.| ++++++.+++ .+..++|
T Consensus 59 ~~------~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~-~~~g~iv 131 (277)
T PRK05993 59 PE------SIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRK-QGQGRIV 131 (277)
T ss_pred HH------HHHHHHHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhh-cCCCEEE
Confidence 65 4544433 57999999986432 24466789999999 6667777777 4667999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||.++.... | ....|+.||+..|.+++..+. .|+++
T Consensus 132 ~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~l~~el~~~gi~v 173 (277)
T PRK05993 132 QCSSILGLVPM----------K----------------------------YRGAYNASKFAIEGLSLTLRMELQGSGIHV 173 (277)
T ss_pred EECChhhcCCC----------C----------------------------ccchHHHHHHHHHHHHHHHHHHhhhhCCEE
Confidence 99998653211 0 115899999999998876542 58999
Q ss_pred EEeecceeecc
Q psy6053 319 LMLRPSIIIPV 329 (614)
Q Consensus 319 ~IvRp~~I~g~ 329 (614)
++++||.|-.+
T Consensus 174 ~~v~Pg~v~T~ 184 (277)
T PRK05993 174 SLIEPGPIETR 184 (277)
T ss_pred EEEecCCccCc
Confidence 99999988543
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-14 Score=140.45 Aligned_cols=189 Identities=13% Similarity=0.157 Sum_probs=135.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++++||||||++|++++++|+++|.+ |+++.|+. ++++++.+ ...++.++.+|+++
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~---V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~D~~~ 57 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQ---VIACGRNQ------SVLDELHT--------------QSANIFTLAFDVTD 57 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCE---EEEEECCH------HHHHHHHH--------------hcCCCeEEEeeCCC
Confidence 368999999999999999999999876 88888863 33333211 12457889999998
Q ss_pred CCCCCCHHHHHHHhcc----ccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCcee
Q psy6053 182 DELAIKESDRQLLASE----VDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHISTAYC 249 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~----vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~~~ 249 (614)
++ +++.++++ +|+++|+||...+ .+.++..+++|+.|+.++++.+... .+-+++|++||..+
T Consensus 58 ~~------~~~~~~~~~~~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~ 131 (240)
T PRK06101 58 HP------GTKAALSQLPFIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIAS 131 (240)
T ss_pred HH------HHHHHHHhcccCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhh
Confidence 66 67777664 5899999985422 2345678999999999999998752 23357999998754
Q ss_pred ccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecce
Q psy6053 250 HLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSI 325 (614)
Q Consensus 250 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~ 325 (614)
... .| ....|+.||+..|.+.+.... .|++++++|||.
T Consensus 132 ~~~----------~~----------------------------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~ 173 (240)
T PRK06101 132 ELA----------LP----------------------------RAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGF 173 (240)
T ss_pred ccC----------CC----------------------------CCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCc
Confidence 211 01 015799999999998876542 689999999999
Q ss_pred eecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 326 IIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 326 I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
|.++..... . . . .-..++.+++|+.++.++..
T Consensus 174 i~t~~~~~~-----~--------------~------~---~~~~~~~~~~a~~i~~~i~~ 205 (240)
T PRK06101 174 VATPLTDKN-----T--------------F------A---MPMIITVEQASQEIRAQLAR 205 (240)
T ss_pred CCCCCcCCC-----C--------------C------C---CCcccCHHHHHHHHHHHHhc
Confidence 976532100 0 0 0 01147899999999888765
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=142.42 Aligned_cols=221 Identities=16% Similarity=0.159 Sum_probs=146.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+||||||||+||+.+++.|++.|+. |+++.|+++ .+++.+.+. + ...++.++.+|+
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~---v~~~~~~~~----~~~~~~~~~------------~-~~~~~~~~~~D~ 72 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGAD---IIITTHGTN----WDETRRLIE------------K-EGRKVTFVQVDL 72 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCcH----HHHHHHHHH------------h-cCCceEEEEcCC
Confidence 46899999999999999999999999876 778888622 222332211 1 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +.+.+++ .+|++||+|+.... .+.++..+++|+.|+..+++.+... .+..++|
T Consensus 73 ~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 146 (258)
T PRK06935 73 TKPE------SAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKII 146 (258)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9866 5655554 57999999996431 3456778899999988777666531 2456899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.+|+..|.+++..+. +|+++
T Consensus 147 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 188 (258)
T PRK06935 147 NIASMLSFQGGK--------------------------------------FVPAYTASKHGVAGLTKAFANELAAYNIQV 188 (258)
T ss_pred EECCHHhccCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999986532210 014799999999999887765 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++++||.|..+...+.+. ... ........ + + ...+...+|+++++..++..... ...+.++.
T Consensus 189 ~~i~PG~v~t~~~~~~~~------~~~-~~~~~~~~----~---~--~~~~~~~~dva~~~~~l~s~~~~--~~~G~~i~ 250 (258)
T PRK06935 189 NAIAPGYIKTANTAPIRA------DKN-RNDEILKR----I---P--AGRWGEPDDLMGAAVFLASRASD--YVNGHILA 250 (258)
T ss_pred EEEEeccccccchhhccc------ChH-HHHHHHhc----C---C--CCCCCCHHHHHHHHHHHcChhhc--CCCCCEEE
Confidence 999999886653322111 011 00111110 0 0 12256668999998877754331 12566776
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 251 ~dgg 254 (258)
T PRK06935 251 VDGG 254 (258)
T ss_pred ECCC
Confidence 6654
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-14 Score=142.77 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=163.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|||||||||+|++++++|+++|++ |.+++|....... . . ..+++..+|+.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~---v~~~~r~~~~~~~------~----------------~-~~v~~~~~d~~~~ 54 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHE---VRAAVRNPEAAAA------L----------------A-GGVEVVLGDLRDP 54 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCE---EEEEEeCHHHHHh------h----------------c-CCcEEEEeccCCH
Confidence 57999999999999999999999876 8999998643211 1 2 5689999999998
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccCC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYP 262 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~~ 262 (614)
. .+...+++++.++++.+... ... ........+..+..+.+. .+.++++++|...+....
T Consensus 55 ~------~l~~a~~G~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~--~~~~~~~~~s~~~~~~~~--------- 114 (275)
T COG0702 55 K------SLVAGAKGVDGVLLISGLLD-GSD--AFRAVQVTAVVRAAEAAG--AGVKHGVSLSVLGADAAS--------- 114 (275)
T ss_pred h------HHHHHhccccEEEEEecccc-ccc--chhHHHHHHHHHHHHHhc--CCceEEEEeccCCCCCCC---------
Confidence 7 89999999999999988765 332 222333433444444444 257788888888653211
Q ss_pred CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCC
Q psy6053 263 PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNIN 342 (614)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~ 342 (614)
+..|..+|..+|+++... |++.+++||...+.....
T Consensus 115 -------------------------------~~~~~~~~~~~e~~l~~s---g~~~t~lr~~~~~~~~~~---------- 150 (275)
T COG0702 115 -------------------------------PSALARAKAAVEAALRSS---GIPYTTLRRAAFYLGAGA---------- 150 (275)
T ss_pred -------------------------------ccHHHHHHHHHHHHHHhc---CCCeEEEecCeeeeccch----------
Confidence 268999999999999998 999999997665543221
Q ss_pred chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhccc
Q psy6053 343 GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTT 422 (614)
Q Consensus 343 g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~ 422 (614)
. ........+.... ..+......+.++|++.++..++..+.. .+.+|.++.+ +..+..+..+.+.+..|+
T Consensus 151 -~-~~~~~~~~~~~~~--~~~~~~~~~i~~~d~a~~~~~~l~~~~~----~~~~~~l~g~--~~~~~~~~~~~l~~~~gr 220 (275)
T COG0702 151 -A-FIEAAEAAGLPVI--PRGIGRLSPIAVDDVAEALAAALDAPAT----AGRTYELAGP--EALTLAELASGLDYTIGR 220 (275)
T ss_pred -h-HHHHHHhhCCcee--cCCCCceeeeEHHHHHHHHHHHhcCCcc----cCcEEEccCC--ceecHHHHHHHHHHHhCC
Confidence 1 1222233333222 2233388999999999999888876543 7789999998 889999999999999888
Q ss_pred ccCC
Q psy6053 423 EVPL 426 (614)
Q Consensus 423 ~~p~ 426 (614)
+...
T Consensus 221 ~~~~ 224 (275)
T COG0702 221 PVGL 224 (275)
T ss_pred ccee
Confidence 6443
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=143.04 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=116.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++||||||||++|+++++.|++.|.. |++++|.... .+.+.+.. .. ...++.++.+|+++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~---v~~~~r~~~~---~~~~~~~~------------~~-~~~~~~~~~~D~~~ 62 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN---VIAGVQIAPQ---VTALRAEA------------AR-RGLALRVEKLDLTD 62 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHH------------Hh-cCCcceEEEeeCCC
Confidence 578999999999999999999999866 8888886421 11121111 11 22468899999999
Q ss_pred CCCCCCHHHHHHHhc-cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEEEEeCcee
Q psy6053 182 DELAIKESDRQLLAS-EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFVHISTAYC 249 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V~vST~~~ 249 (614)
++ ++..+.. ++|+|||+|+.... .+.++..+++|+.|+.++.+.+ ++ .+.+++|++||..+
T Consensus 63 ~~------~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~~SS~~~ 135 (257)
T PRK09291 63 AI------DRAQAAEWDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVA-RGKGKVVFTSSMAG 135 (257)
T ss_pred HH------HHHHHhcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCceEEEEcChhh
Confidence 75 6766665 89999999986421 2446677899999887766543 44 35589999999754
Q ss_pred ccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecce
Q psy6053 250 HLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSI 325 (614)
Q Consensus 250 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~ 325 (614)
.... | ....|+.||...|.+++.... .|++++++|||.
T Consensus 136 ~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~ 177 (257)
T PRK09291 136 LITG----------P----------------------------FTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGP 177 (257)
T ss_pred ccCC----------C----------------------------CcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCc
Confidence 2210 0 125799999999988776543 589999999997
Q ss_pred ee
Q psy6053 326 II 327 (614)
Q Consensus 326 I~ 327 (614)
+.
T Consensus 178 ~~ 179 (257)
T PRK09291 178 YL 179 (257)
T ss_pred cc
Confidence 64
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=138.58 Aligned_cols=220 Identities=11% Similarity=0.087 Sum_probs=140.2
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+++||||||+||++++++|++.|.. |++..+... ....+.++++ + . ...++..+.+|++
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~---vv~~~~~~~-~~~~~~~~~~---------~----~-~~~~~~~~~~D~~ 63 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFK---VVAGCGPNS-PRRVKWLEDQ---------K----A-LGFDFIASEGNVG 63 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCE---EEEEcCCCh-HHHHHHHHHH---------H----h-cCCcEEEEEcCCC
Confidence 5789999999999999999999999876 665544321 1111222221 1 0 2245778899999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+.+ ++..+++ ++|+|||+||.... .+.++..+++|+.|+..+++.+... .+..++|+
T Consensus 64 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~ 137 (246)
T PRK12938 64 DWD------STKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIIN 137 (246)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 865 5555443 58999999997531 2456778999999977766554321 35678999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.+|+..+.+.+.... .|++++
T Consensus 138 isS~~~~~~~~--------------------------------------~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~ 179 (246)
T PRK12938 138 ISSVNGQKGQF--------------------------------------GQTNYSTAKAGIHGFTMSLAQEVATKGVTVN 179 (246)
T ss_pred EechhccCCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 99986532110 025799999988777766543 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
+++||.+.++..... .+ ..+..+.... ....+...+++++++..++..... ...+.++.+
T Consensus 180 ~i~pg~~~t~~~~~~--------~~-~~~~~~~~~~---------~~~~~~~~~~v~~~~~~l~~~~~~--~~~g~~~~~ 239 (246)
T PRK12938 180 TVSPGYIGTDMVKAI--------RP-DVLEKIVATI---------PVRRLGSPDEIGSIVAWLASEESG--FSTGADFSL 239 (246)
T ss_pred EEEecccCCchhhhc--------Ch-HHHHHHHhcC---------CccCCcCHHHHHHHHHHHcCcccC--CccCcEEEE
Confidence 999998866532110 11 1111111111 112356789999998887754321 125666766
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 240 ~~g 242 (246)
T PRK12938 240 NGG 242 (246)
T ss_pred CCc
Confidence 544
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=143.84 Aligned_cols=218 Identities=14% Similarity=0.169 Sum_probs=146.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||+|+||.++++.|++.|.. |+++.|+... .+...+. ...++..+.+|+
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~---Vi~~~r~~~~---~~~~~~~----------------~~~~~~~~~~Dl 70 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGAR---VALLDRSEDV---AEVAAQL----------------LGGNAKGLVCDV 70 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHh----------------hCCceEEEEecC
Confidence 46899999999999999999999999865 8888886431 1111111 123567899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 71 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 144 (255)
T PRK06841 71 SDSQ------SVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIV 144 (255)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEE
Confidence 9865 5555543 57999999997532 2355678899999999999988652 2457899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||...+.+.+..+. .|+.+
T Consensus 145 ~~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 186 (255)
T PRK06841 145 NLASQAGVVAL----------E----------------------------RHVAYCASKAGVVGMTKVLALEWGPYGITV 186 (255)
T ss_pred EEcchhhccCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHHHhhCeEE
Confidence 99998542111 0 015799999998888877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|-.+.... .| .+. .......+. ....+.+.+|+|++++.++..... ...+.+++
T Consensus 187 ~~v~pg~v~t~~~~~--~~----~~~--~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~--~~~G~~i~ 247 (255)
T PRK06841 187 NAISPTVVLTELGKK--AW----AGE--KGERAKKLI---------PAGRFAYPEEIAAAALFLASDAAA--MITGENLV 247 (255)
T ss_pred EEEEeCcCcCccccc--cc----chh--HHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcccc--CccCCEEE
Confidence 999999886553210 01 010 111111111 122467899999999988865332 12567777
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 248 ~dgg 251 (255)
T PRK06841 248 IDGG 251 (255)
T ss_pred ECCC
Confidence 7665
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-14 Score=139.65 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=142.3
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|+||||+|++|+++++.|+++|++ |+++.|+... .. +.+.+. +. + ...++.++.+|+++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~---v~~~~r~~~~-~~-~~~~~~--------~~----~-~~~~~~~~~~D~~~~~- 61 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAK---VIITYRSSEE-GA-EEVVEE--------LK----A-YGVKALGVVCDVSDRE- 61 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCchh-HH-HHHHHH--------HH----h-cCCceEEEEecCCCHH-
Confidence 589999999999999999999876 8888886521 11 111111 11 1 2235889999999876
Q ss_pred CCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeCc
Q psy6053 185 AIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHISTA 247 (614)
Q Consensus 185 GLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST~ 247 (614)
+++.+++ .+|+|||+||.... .+..+..+++|+.++.++++.+... ++.++|+++||.
T Consensus 62 -----~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 136 (239)
T TIGR01830 62 -----DVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV 136 (239)
T ss_pred -----HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 5666554 46999999997532 2445678899999999999988752 345689999997
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeec
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRP 323 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp 323 (614)
.+.... | ....|+.+|...|.+++.... .|++++++||
T Consensus 137 ~~~~g~----------~----------------------------~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~p 178 (239)
T TIGR01830 137 VGLMGN----------A----------------------------GQANYAASKAGVIGFTKSLAKELASRNITVNAVAP 178 (239)
T ss_pred cccCCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEE
Confidence 542211 0 015799999988887766543 5899999999
Q ss_pred ceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 324 SIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 324 ~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
|.+.++...+. . .......... .. ..-+.+++|++++++.++..... ...+++||+.++
T Consensus 179 g~~~~~~~~~~--------~-~~~~~~~~~~-~~--------~~~~~~~~~~a~~~~~~~~~~~~--~~~g~~~~~~~g 237 (239)
T TIGR01830 179 GFIDTDMTDKL--------S-EKVKKKILSQ-IP--------LGRFGTPEEVANAVAFLASDEAS--YITGQVIHVDGG 237 (239)
T ss_pred CCCCChhhhhc--------C-hHHHHHHHhc-CC--------cCCCcCHHHHHHHHHHHhCcccC--CcCCCEEEeCCC
Confidence 98755422110 1 1111111111 10 11255789999999888743221 136789999765
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-14 Score=140.88 Aligned_cols=220 Identities=13% Similarity=0.125 Sum_probs=143.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|++|||||+|+||++++++|++.|++ |+++.|+... ..++..+.+|+
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~---Vi~~~r~~~~---------------------------~~~~~~~~~D~ 53 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSN---VINFDIKEPS---------------------------YNDVDYFKVDV 53 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEeCCccc---------------------------cCceEEEEccC
Confidence 46899999999999999999999999876 8888886532 13578899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+..+++.+... .+..++|
T Consensus 54 ~~~~------~i~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 127 (258)
T PRK06398 54 SNKE------QVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVII 127 (258)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9976 5555543 58999999996432 3456778999999999998877542 2457899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCL 319 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~ 319 (614)
++||..+..... ....|+.||+..|.+.+..+. .++.+.
T Consensus 128 ~isS~~~~~~~~--------------------------------------~~~~Y~~sKaal~~~~~~la~e~~~~i~vn 169 (258)
T PRK06398 128 NIASVQSFAVTR--------------------------------------NAAAYVTSKHAVLGLTRSIAVDYAPTIRCV 169 (258)
T ss_pred EeCcchhccCCC--------------------------------------CCchhhhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 999985532110 016899999999999887765 248899
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.|-.+......++..+ ..+....... ... ........+...+++|++++.++..... ...+.++.+
T Consensus 170 ~i~PG~v~T~~~~~~~~~~~~-~~~~~~~~~~-~~~-----~~~~~~~~~~~p~eva~~~~~l~s~~~~--~~~G~~i~~ 240 (258)
T PRK06398 170 AVCPGSIRTPLLEWAAELEVG-KDPEHVERKI-REW-----GEMHPMKRVGKPEEVAYVVAFLASDLAS--FITGECVTV 240 (258)
T ss_pred EEecCCccchHHhhhhhcccc-CChhhhHHHH-Hhh-----hhcCCcCCCcCHHHHHHHHHHHcCcccC--CCCCcEEEE
Confidence 999998855432111111000 0011100000 000 0000112345689999998887754321 124566666
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 241 dgg 243 (258)
T PRK06398 241 DGG 243 (258)
T ss_pred CCc
Confidence 555
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=163.49 Aligned_cols=229 Identities=17% Similarity=0.206 Sum_probs=153.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
...||+||||||+|+||.++++.|++.|.+ |+++.|+... +++..+ .+. ...++.++.+|
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~---Vvl~~r~~~~------~~~~~~-----~l~------~~~~v~~v~~D 478 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGAC---VVLADLDEEA------AEAAAA-----ELG------GPDRALGVACD 478 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCE---EEEEeCCHHH------HHHHHH-----HHh------ccCcEEEEEec
Confidence 356899999999999999999999999865 8888886422 221110 000 11468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCC-ce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHL-EL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k~ 240 (614)
+++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+. .+
T Consensus 479 vtd~~------~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~ 552 (681)
T PRK08324 479 VTDEA------AVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGS 552 (681)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcE
Confidence 99865 5555543 68999999995431 3456778999999999998777542 233 68
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
||++||..+.... | ....|+.||+..|.+++.... .|+
T Consensus 553 iV~vsS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI 594 (681)
T PRK08324 553 IVFIASKNAVNPG----------P----------------------------NFGAYGAAKAAELHLVRQLALELGPDGI 594 (681)
T ss_pred EEEECCccccCCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHHhcccCe
Confidence 9999997553211 0 015799999999999988754 479
Q ss_pred CEEEeecceee-cccCCCCccccCCCCchHHHHHHHhcCcee----eEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC
Q psy6053 317 PCLMLRPSIII-PVWREPLPGWTDNINGPTGLLIGAGKGVIR----TMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391 (614)
Q Consensus 317 p~~IvRp~~I~-g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~----~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~ 391 (614)
++.+++|+.|+ ++.-. .+.|... .....|... ..+..+....++++++|+|++++.++..... .
T Consensus 595 rvn~v~Pg~v~~~t~~~-~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~--~ 663 (681)
T PRK08324 595 RVNGVNPDAVVRGSGIW-TGEWIEA--------RAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLS--K 663 (681)
T ss_pred EEEEEeCceeecCCccc-cchhhhh--------hhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCcccc--C
Confidence 99999999998 44210 0111100 001111110 0123344556789999999999988742211 1
Q ss_pred CCccEEEeccC
Q psy6053 392 HRQSIVHLTSS 402 (614)
Q Consensus 392 ~~~~vyni~~~ 402 (614)
..+.++++.++
T Consensus 664 ~tG~~i~vdgG 674 (681)
T PRK08324 664 TTGAIITVDGG 674 (681)
T ss_pred CcCCEEEECCC
Confidence 36789999887
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=137.64 Aligned_cols=210 Identities=13% Similarity=0.017 Sum_probs=139.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|+||||||+||++++++|++.|++ |+++.|..... . ...++.+|++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~---v~~~~r~~~~~-------------------------~--~~~~~~~D~~ 51 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQ---VIGIARSAIDD-------------------------F--PGELFACDLA 51 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCE---EEEEeCCcccc-------------------------c--CceEEEeeCC
Confidence 4689999999999999999999999865 88888875321 1 1146789999
Q ss_pred CCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 181 ADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
+++ .++.+++ ++|+|||+|+.... .+.+...+++|+.|+.++.+.+... .+..++|++
T Consensus 52 ~~~------~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 125 (234)
T PRK07577 52 DIE------QTAATLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNI 125 (234)
T ss_pred CHH------HHHHHHHHHHHhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 865 5555554 57999999997532 2345667899999988876665431 356789999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||....+.. ....|+.||...|.+++..+. .|+++++
T Consensus 126 sS~~~~~~~---------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~ 166 (234)
T PRK07577 126 CSRAIFGAL---------------------------------------DRTSYSAAKSALVGCTRTWALELAEYGITVNA 166 (234)
T ss_pred ccccccCCC---------------------------------------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEE
Confidence 998643211 015799999999988876543 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+|||.+..+... + .............+.. + .......+|+|++++.++..... ...+.++++.
T Consensus 167 i~pg~~~t~~~~----~--~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~a~~~~~l~~~~~~--~~~g~~~~~~ 229 (234)
T PRK07577 167 VAPGPIETELFR----Q--TRPVGSEEEKRVLASI-------P--MRRLGTPEEVAAAIAFLLSDDAG--FITGQVLGVD 229 (234)
T ss_pred EecCcccCcccc----c--ccccchhHHHHHhhcC-------C--CCCCcCHHHHHHHHHHHhCcccC--CccceEEEec
Confidence 999988654211 0 0000001111111110 0 11234679999999988865421 1256777776
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 230 g~ 231 (234)
T PRK07577 230 GG 231 (234)
T ss_pred CC
Confidence 54
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=138.88 Aligned_cols=218 Identities=13% Similarity=0.140 Sum_probs=143.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+++||||+|+||++++++|++.|++ |+...|... ++.+++.. + ...++.++.+|++
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~~---vv~~~~~~~-----~~~~~~~~---------~----~~~~~~~~~~D~~ 62 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGAR---VVVNYHQSE-----DAAEALAD---------E----LGDRAIALQADVT 62 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCe---EEEEcCCCH-----HHHHHHHH---------H----hCCceEEEEcCCC
Confidence 5689999999999999999999999876 555554321 11222111 0 2246888999999
Q ss_pred CCCCCCCHHHHHHHhcc--------ccEEEEcccccC---------h----hHHHHHHHHHhHHHHHHHHHHHHHc---C
Q psy6053 181 ADELAIKESDRQLLASE--------VDIMIHGAATIR---------F----DEALKKAVLLNTRGTKMMLSLAKEM---K 236 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~--------vd~ViH~AA~v~---------~----~~~~~~~~~~Nv~gt~~ll~la~~~---~ 236 (614)
+++ ++..++++ +|++||+|+... + .+.+...+++|+.|+.++++.+... .
T Consensus 63 ~~~------~~~~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 136 (253)
T PRK08642 63 DRE------QVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQ 136 (253)
T ss_pred CHH------HHHHHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 865 55555542 899999997421 1 2445678999999999999988631 2
Q ss_pred CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---
Q psy6053 237 HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--- 313 (614)
Q Consensus 237 ~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--- 313 (614)
+..++|++||....... .| .+.|+.||...|.+++..+.
T Consensus 137 ~~g~iv~iss~~~~~~~---------~~-----------------------------~~~Y~~sK~a~~~l~~~la~~~~ 178 (253)
T PRK08642 137 GFGRIINIGTNLFQNPV---------VP-----------------------------YHDYTTAKAALLGLTRNLAAELG 178 (253)
T ss_pred CCeEEEEECCccccCCC---------CC-----------------------------ccchHHHHHHHHHHHHHHHHHhC
Confidence 44689999986432110 00 16899999999999988765
Q ss_pred -CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
.|+.+..++||.+-.+... . ..+......... .. ....+...+|+++++..++..... ..
T Consensus 179 ~~~i~v~~i~pG~v~t~~~~---~-----~~~~~~~~~~~~-~~--------~~~~~~~~~~va~~~~~l~~~~~~--~~ 239 (253)
T PRK08642 179 PYGITVNMVSGGLLRTTDAS---A-----ATPDEVFDLIAA-TT--------PLRKVTTPQEFADAVLFFASPWAR--AV 239 (253)
T ss_pred ccCeEEEEEeecccCCchhh---c-----cCCHHHHHHHHh-cC--------CcCCCCCHHHHHHHHHHHcCchhc--Cc
Confidence 5799999999988543211 1 011111111111 11 112378889999999988864321 23
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.+.++.+.++
T Consensus 240 ~G~~~~vdgg 249 (253)
T PRK08642 240 TGQNLVVDGG 249 (253)
T ss_pred cCCEEEeCCC
Confidence 6677777655
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-14 Score=141.36 Aligned_cols=217 Identities=14% Similarity=0.159 Sum_probs=140.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++++||||||+||+++++.|+++|.. |.+..|.. ++++++.. . ...++.++.+|+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~---v~~~~~~~------~~~~~~~~---------~----~~~~~~~~~~D~ 61 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAI---VGLHGTRV------EKLEALAA---------E----LGERVKIFPANL 61 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEcCCH------HHHHHHHH---------H----hCCceEEEEccC
Confidence 35789999999999999999999999864 66666642 22222211 0 224678899999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++.+ +++.++ .++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 135 (245)
T PRK12936 62 SDRD------EVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRII 135 (245)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9865 555543 358999999996431 3456778999999999988876531 2557899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.+|...+.+++..+. .|+++
T Consensus 136 ~~sS~~~~~~~----------~----------------------------~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v 177 (245)
T PRK12936 136 NITSVVGVTGN----------P----------------------------GQANYCASKAGMIGFSKSLAQEIATRNVTV 177 (245)
T ss_pred EECCHHhCcCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHhhHhCeEE
Confidence 99997542211 0 015799999977766655433 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++++||.+..+.... . .+. ......+.. ....+...+++++++..++..... ...+++++
T Consensus 178 ~~i~pg~~~t~~~~~-------~-~~~--~~~~~~~~~--------~~~~~~~~~~ia~~~~~l~~~~~~--~~~G~~~~ 237 (245)
T PRK12936 178 NCVAPGFIESAMTGK-------L-NDK--QKEAIMGAI--------PMKRMGTGAEVASAVAYLASSEAA--YVTGQTIH 237 (245)
T ss_pred EEEEECcCcCchhcc-------c-ChH--HHHHHhcCC--------CCCCCcCHHHHHHHHHHHcCcccc--CcCCCEEE
Confidence 999999774432110 0 000 000011110 112245689999999877643321 13578898
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 238 ~~~g 241 (245)
T PRK12936 238 VNGG 241 (245)
T ss_pred ECCC
Confidence 8876
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-14 Score=141.76 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=144.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++++||||||+||.++++.|+++|.+ |+++.|+... .+.+.+. ++. ...++.++.+|+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~---Vi~~~r~~~~---~~~~~~~--------l~~-----~~~~~~~~~~D~ 68 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGAD---VLIAARTESQ---LDEVAEQ--------IRA-----AGRRAHVVAADL 68 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHH--------HHh-----cCCcEEEEEccC
Confidence 46899999999999999999999999865 8888886421 1111111 110 224688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 241 (614)
++++ .+..+++ ++|+|||+|+.... .+.+...+++|+.|+.++++.+... .+..++
T Consensus 69 ~~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~i 142 (263)
T PRK07814 69 AHPE------ATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSV 142 (263)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEE
Confidence 9865 5554443 68999999985321 2456778999999999999998741 245689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCE
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPC 318 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~ 318 (614)
|++||.++.... ...+.|+.||+..|.+++.... .++.+
T Consensus 143 v~~sS~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v 184 (263)
T PRK07814 143 INISSTMGRLAG--------------------------------------RGFAAYGTAKAALAHYTRLAALDLCPRIRV 184 (263)
T ss_pred EEEccccccCCC--------------------------------------CCCchhHHHHHHHHHHHHHHHHHHCCCceE
Confidence 999997543211 0015799999999999887765 35788
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+.++||.+..+.... . .....+ .....+.. ....+...+|+|++++.++..... ...+..+.
T Consensus 185 ~~i~Pg~v~t~~~~~----~---~~~~~~-~~~~~~~~--------~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~~ 246 (263)
T PRK07814 185 NAIAPGSILTSALEV----V---AANDEL-RAPMEKAT--------PLRRLGDPEDIAAAAVYLASPAGS--YLTGKTLE 246 (263)
T ss_pred EEEEeCCCcCchhhh----c---cCCHHH-HHHHHhcC--------CCCCCcCHHHHHHHHHHHcCcccc--CcCCCEEE
Confidence 889998875432110 0 000111 11111111 112245789999999988754321 12455666
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 247 ~~~~ 250 (263)
T PRK07814 247 VDGG 250 (263)
T ss_pred ECCC
Confidence 6543
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=143.30 Aligned_cols=198 Identities=15% Similarity=0.104 Sum_probs=131.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|+||||||++|.++++.|++.|++ |+++.|+. ++++.+. ..++..+.+|++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~---v~~~~r~~------~~~~~~~----------------~~~~~~~~~D~~~~ 57 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYR---VLAACRKP------DDVARMN----------------SLGFTGILLDLDDP 57 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCH------HHhHHHH----------------hCCCeEEEeecCCH
Confidence 68999999999999999999999875 78888864 2222221 12467789999886
Q ss_pred CCCCCHHHHHHHh--------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHH----HHHHHHcCCCceEEE
Q psy6053 183 ELAIKESDRQLLA--------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMM----LSLAKEMKHLELFVH 243 (614)
Q Consensus 183 ~lGLs~~~~~~l~--------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~l----l~la~~~~~~k~~V~ 243 (614)
+ ++..++ ..+|.|+|+||.... .+.++..+++|+.|+.++ ++.+++ .+.+++|+
T Consensus 58 ~------~~~~~~~~i~~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-~~~~~iv~ 130 (256)
T PRK08017 58 E------SVERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLP-HGEGRIVM 130 (256)
T ss_pred H------HHHHHHHHHHHhcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cCCCEEEE
Confidence 5 333322 357899999986431 234667899999998776 555555 35678999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh----hCCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM----NNGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~----~~glp~~ 319 (614)
+||.++..... ....|+.||...|.+.+... ..+++++
T Consensus 131 ~ss~~~~~~~~--------------------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~ 172 (256)
T PRK08017 131 TSSVMGLISTP--------------------------------------GRGAYAASKYALEAWSDALRMELRHSGIKVS 172 (256)
T ss_pred EcCcccccCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHhhcCCEEE
Confidence 99986532210 01579999999998876532 2589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
++|||.+..+... +... ..... .....+....+++++||+++++..++.+.
T Consensus 173 ~v~pg~~~t~~~~-------~~~~--------~~~~~-~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 223 (256)
T PRK08017 173 LIEPGPIRTRFTD-------NVNQ--------TQSDK-PVENPGIAARFTLGPEAVVPKLRHALESP 223 (256)
T ss_pred EEeCCCcccchhh-------cccc--------hhhcc-chhhhHHHhhcCCCHHHHHHHHHHHHhCC
Confidence 9999876443211 1000 00000 00111223345789999999999988654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-14 Score=142.17 Aligned_cols=193 Identities=14% Similarity=0.111 Sum_probs=132.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||||.||+.++++|+++|.+ |.+..|+. +++++..+ ...++.++.+|+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~---v~~~~r~~------~~~~~~~~--------------~~~~~~~~~~D~ 59 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR---VAIGDLDE------ALAKETAA--------------ELGLVVGGPLDV 59 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH--------------HhccceEEEccC
Confidence 45789999999999999999999999876 77777753 22222211 112477899999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.++ .++|++||+||.... .+.+...+++|+.|+..+++.+... .+..++|
T Consensus 60 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv 133 (273)
T PRK07825 60 TDPA------SFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVV 133 (273)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9876 544433 357999999996432 2356778999999998887766431 3556899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+.... .|+++
T Consensus 134 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~l~~el~~~gi~v 175 (273)
T PRK07825 134 NVASLAGKIPVP--------------------------------------GMATYCASKHAVVGFTDAARLELRGTGVHV 175 (273)
T ss_pred EEcCccccCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhhccCcEE
Confidence 999986532210 015799999877665544332 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
++++||.+-.+... +. ........++++|+|++++.++.+.
T Consensus 176 ~~v~Pg~v~t~~~~---------------------~~------~~~~~~~~~~~~~va~~~~~~l~~~ 216 (273)
T PRK07825 176 SVVLPSFVNTELIA---------------------GT------GGAKGFKNVEPEDVAAAIVGTVAKP 216 (273)
T ss_pred EEEeCCcCcchhhc---------------------cc------ccccCCCCCCHHHHHHHHHHHHhCC
Confidence 99999987433110 00 0111234688999999999888653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-14 Score=139.92 Aligned_cols=194 Identities=15% Similarity=0.137 Sum_probs=134.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||||+||.++++.|++.|++ |++++|...+. .+-.+++ +. . ...++.++.+|+++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~---Vi~~~r~~~~~--~~~~~~~---------~~-~---~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGAR---LYLAARDVERL--ERLADDL---------RA-R---GAVAVSTHELDILD 62 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCE---EEEEeCCHHHH--HHHHHHH---------HH-h---cCCeEEEEecCCCC
Confidence 478999999999999999999999876 88999875321 1111111 11 0 22578999999998
Q ss_pred CCCCCCHHHHHHHhc----cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeCc
Q psy6053 182 DELAIKESDRQLLAS----EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~----~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST~ 247 (614)
++ +++.+++ ++|+|||+|+.... .+.+...+++|+.|+.++++.+... .+..++|++||.
T Consensus 63 ~~------~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 63 TA------SHAAFLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred hH------HHHHHHHHHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 76 5655554 46999999986432 2334567899999999999887642 245789999998
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeec
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRP 323 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp 323 (614)
++.... | ....|+.||+..+.+.+..+. .|+++.+++|
T Consensus 137 ~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~p 178 (243)
T PRK07102 137 AGDRGR----------A----------------------------SNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKP 178 (243)
T ss_pred cccCCC----------C----------------------------CCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEec
Confidence 642211 0 014799999998888877643 5899999999
Q ss_pred ceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 324 SIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 324 ~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
|.|.++...+. . . + ..-..+++++++.++.+...
T Consensus 179 g~v~t~~~~~~-------------------~----~---~--~~~~~~~~~~a~~i~~~~~~ 212 (243)
T PRK07102 179 GFVRTPMTAGL-------------------K----L---P--GPLTAQPEEVAKDIFRAIEK 212 (243)
T ss_pred CcccChhhhcc-------------------C----C---C--ccccCCHHHHHHHHHHHHhC
Confidence 98866522100 0 0 0 01246789999999887754
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=140.32 Aligned_cols=228 Identities=17% Similarity=0.156 Sum_probs=146.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++++||||||+||+++++.|++.|++ |+++.|+.. ..+..+++.+ ...++.++.+|+
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~---Vv~~~r~~~---~~~~~~~~~~--------------~~~~~~~~~~Dl 63 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGAN---LILLDISPE---IEKLADELCG--------------RGHRCTAVVADV 63 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEecCCHH---HHHHHHHHHH--------------hCCceEEEECCC
Confidence 46799999999999999999999999876 888888642 1121222110 124678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+..+++.+... .+..++|
T Consensus 64 ~~~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv 137 (263)
T PRK08226 64 RDPA------SVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIV 137 (263)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9876 5665544 57999999996432 2345667899999999998886541 2456899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... .| ....|+.+|...|.+++..+. .|+++
T Consensus 138 ~isS~~~~~~~---------~~----------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v 180 (263)
T PRK08226 138 MMSSVTGDMVA---------DP----------------------------GETAYALTKAAIVGLTKSLAVEYAQSGIRV 180 (263)
T ss_pred EECcHHhcccC---------CC----------------------------CcchHHHHHHHHHHHHHHHHHHhcccCcEE
Confidence 99997542110 00 015799999999988877664 48999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.+.++....+.++.. ...+...+..+..+. + ...+.+.+++|++++.++..... ...+.++-
T Consensus 181 ~~i~pg~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~-------p--~~~~~~~~~va~~~~~l~~~~~~--~~~g~~i~ 248 (263)
T PRK08226 181 NAICPGYVRTPMAESIARQSN-PEDPESVLTEMAKAI-------P--LRRLADPLEVGELAAFLASDESS--YLTGTQNV 248 (263)
T ss_pred EEEecCcccCHHHHhhhhhcc-CCCcHHHHHHHhccC-------C--CCCCCCHHHHHHHHHHHcCchhc--CCcCceEe
Confidence 999999987764322111100 001112222222211 1 11246889999998877643321 12455555
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 249 ~dgg 252 (263)
T PRK08226 249 IDGG 252 (263)
T ss_pred ECCC
Confidence 5544
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=140.81 Aligned_cols=203 Identities=14% Similarity=0.095 Sum_probs=133.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||+||+.++++|+++|.+ |++..|+... .++.+.++ +. ...++.++.+|++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~---V~~~~r~~~~--~~~~~~~l---------~~-----~~~~~~~~~~D~~~~ 61 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWR---LALADVNEEG--GEETLKLL---------RE-----AGGDGFYQRCDVRDY 61 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE---EEEEeCCHHH--HHHHHHHH---------Hh-----cCCceEEEEccCCCH
Confidence 57999999999999999999999876 7788876422 11111111 11 234688899999986
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHH----HHHcCCCceEEEE
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSL----AKEMKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~l----a~~~~~~k~~V~v 244 (614)
+ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++.+. +++ .+..++|++
T Consensus 62 ~------~~~~~~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~v 134 (270)
T PRK05650 62 S------QLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKR-QKSGRIVNI 134 (270)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh-CCCCEEEEE
Confidence 5 5555543 68999999997542 245667789998888776655 445 356789999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+..+.+.+.... .|+++++
T Consensus 135 sS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~ 176 (270)
T PRK05650 135 ASMAGLMQGP--------------------------------------AMSSYNVAKAGVVALSETLLVELADDEIGVHV 176 (270)
T ss_pred CChhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 9986533210 015799999986655544443 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
++||.+..+......+.. ........... ....++++|+|+.++.++.+
T Consensus 177 v~Pg~v~t~~~~~~~~~~---~~~~~~~~~~~-------------~~~~~~~~~vA~~i~~~l~~ 225 (270)
T PRK05650 177 VCPSFFQTNLLDSFRGPN---PAMKAQVGKLL-------------EKSPITAADIADYIYQQVAK 225 (270)
T ss_pred EecCccccCcccccccCc---hhHHHHHHHHh-------------hcCCCCHHHHHHHHHHHHhC
Confidence 999999765432211100 00001111111 11247899999999988854
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=139.04 Aligned_cols=220 Identities=17% Similarity=0.236 Sum_probs=143.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+.+++|+||||||+||+.+++.|++.|++ |+++ .|.... .+.+.+. +. . ...++.++.+|
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~---v~~~~~r~~~~---~~~~~~~--------~~----~-~~~~~~~~~~D 63 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK---VVIAYDINEEA---AQELLEE--------IK----E-EGGDAIAVKAD 63 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEcCCCHHH---HHHHHHH--------HH----h-cCCeEEEEECC
Confidence 45789999999999999999999999876 6666 675321 1111111 11 0 22468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+.+++
T Consensus 64 ~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~ 137 (247)
T PRK05565 64 VSSEE------DVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVI 137 (247)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 99976 5555544 68999999997532 2446778999999988888777642 245679
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||........ . ...|+.||...+.+++.... .|++
T Consensus 138 v~~sS~~~~~~~~----------~----------------------------~~~y~~sK~a~~~~~~~~~~~~~~~gi~ 179 (247)
T PRK05565 138 VNISSIWGLIGAS----------C----------------------------EVLYSASKGAVNAFTKALAKELAPSGIR 179 (247)
T ss_pred EEECCHhhccCCC----------C----------------------------ccHHHHHHHHHHHHHHHHHHHHHHcCeE
Confidence 9999975432110 0 14699999877776665544 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.+-.+..... .+. ....... ......+...++++++++.++..... ...++++
T Consensus 180 ~~~v~pg~v~t~~~~~~--------~~~-~~~~~~~---------~~~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~ 239 (247)
T PRK05565 180 VNAVAPGAIDTEMWSSF--------SEE-DKEGLAE---------EIPLGRLGKPEEIAKVVLFLASDDAS--YITGQII 239 (247)
T ss_pred EEEEEECCccCcccccc--------ChH-HHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCCccC--CccCcEE
Confidence 99999998855432211 111 1111111 00112356789999998888755332 1356777
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 240 ~~~~~ 244 (247)
T PRK05565 240 TVDGG 244 (247)
T ss_pred EecCC
Confidence 77665
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=140.41 Aligned_cols=217 Identities=15% Similarity=0.108 Sum_probs=144.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||+|+||.++++.|++.|.+ |+++.|+.. ....+ +.+. ... ...++.++.+|++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~---vi~~~r~~~-~~~~~-~~~~------------~~~-~~~~~~~~~~D~~~~ 64 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYR---VIATYFSGN-DCAKD-WFEE------------YGF-TEDQVRLKELDVTDT 64 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCE---EEEEeCCcH-HHHHH-HHHH------------hhc-cCCeEEEEEcCCCCH
Confidence 68999999999999999999999865 889988753 11111 1110 011 234688999999986
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHH----HHHcCCCceEEEE
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSL----AKEMKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~l----a~~~~~~k~~V~v 244 (614)
+ .+..+++ .+|+|||+||.... .+.++..+++|+.|+.++.+. +++ .+..++|++
T Consensus 65 ~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~i 137 (245)
T PRK12824 65 E------ECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCE-QGYGRIINI 137 (245)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCCeEEEEE
Confidence 5 5555443 48999999986431 345667889999998888554 444 356799999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+..+.+++.... .|+++.+
T Consensus 138 ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 179 (245)
T PRK12824 138 SSVNGLKGQF--------------------------------------GQTNYSAAKAGMIGFTKALASEGARYGITVNC 179 (245)
T ss_pred CChhhccCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEE
Confidence 9986542210 014699999988887776553 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.+.++..... .+ ......... .....+...+++++++..++..... .-.++++++.
T Consensus 180 v~pg~~~t~~~~~~--------~~-~~~~~~~~~---------~~~~~~~~~~~va~~~~~l~~~~~~--~~~G~~~~~~ 239 (245)
T PRK12824 180 IAPGYIATPMVEQM--------GP-EVLQSIVNQ---------IPMKRLGTPEEIAAAVAFLVSEAAG--FITGETISIN 239 (245)
T ss_pred EEEcccCCcchhhc--------CH-HHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccc--CccCcEEEEC
Confidence 99998876543211 11 111111111 1122355789999998877744321 1357888888
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 240 ~g 241 (245)
T PRK12824 240 GG 241 (245)
T ss_pred CC
Confidence 77
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-14 Score=144.84 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=117.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||||+||++++++|++.|++ |+++.|.... ..+..+++ ....+ ..++.++.+|+
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~---vi~~~r~~~~--~~~~~~~l---------~~~~~---~~~~~~~~~Dl 76 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAH---VVLAVRNLDK--GKAAAARI---------TAATP---GADVTLQELDL 76 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCE---EEEEeCCHHH--HHHHHHHH---------HHhCC---CCceEEEECCC
Confidence 46799999999999999999999999875 8888886421 11111111 11111 24688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----hHHHHHHHHHhHHH----HHHHHHHHHHcCCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----DEALKKAVLLNTRG----TKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----~~~~~~~~~~Nv~g----t~~ll~la~~~~~~k~~V~ 243 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.| +..+++.+++. +..++|+
T Consensus 77 ~d~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~ 149 (306)
T PRK06197 77 TSLA------SVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVT 149 (306)
T ss_pred CCHH------HHHHHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEE
Confidence 9876 5555543 58999999996432 13445678999999 66677777663 5579999
Q ss_pred EeCceeccCC-cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 244 ISTAYCHLQE-KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 244 vST~~~~~~~-~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
+||..+.... ...++.....+. .....|+.||+..+.+.+..+. .|+++
T Consensus 150 vSS~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v 203 (306)
T PRK06197 150 VSSGGHRIRAAIHFDDLQWERRY--------------------------NRVAAYGQSKLANLLFTYELQRRLAAAGATT 203 (306)
T ss_pred ECCHHHhccCCCCccccCcccCC--------------------------CcHHHHHHHHHHHHHHHHHHHHHhhcCCCCe
Confidence 9998543211 111111000000 1125799999999988877654 46666
Q ss_pred EEe--ecceeecc
Q psy6053 319 LML--RPSIIIPV 329 (614)
Q Consensus 319 ~Iv--Rp~~I~g~ 329 (614)
.++ .||.|..+
T Consensus 204 ~~v~~~PG~v~T~ 216 (306)
T PRK06197 204 IAVAAHPGVSNTE 216 (306)
T ss_pred EEEEeCCCcccCc
Confidence 554 69887554
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=138.45 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=145.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|++|||||||+||.+++++|++.|++ |++..|+.. ++++..+ .++. ...++.++.+|+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~---vvl~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~Dl 67 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAE---IIINDITAE------RAELAVA-----KLRQ-----EGIKAHAAPFNV 67 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCE---EEEEcCCHH------HHHHHHH-----HHHh-----cCCeEEEEecCC
Confidence 46899999999999999999999999876 778887632 2221110 1111 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..++|
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 141 (254)
T PRK08085 68 THKQ------EVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKII 141 (254)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9976 5555543 47999999996431 3557778999999998888876642 2456899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... .....|+.||+..|.+++..+. +|+++
T Consensus 142 ~isS~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 183 (254)
T PRK08085 142 NICSMQSELGR--------------------------------------DTITPYAASKGAVKMLTRGMCVELARHNIQV 183 (254)
T ss_pred EEccchhccCC--------------------------------------CCCcchHHHHHHHHHHHHHHHHHHHhhCeEE
Confidence 99997542111 0115799999999999988755 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.+..+...+..+ ...+...+... .....+...+|+++++..++..... .-.+.+..
T Consensus 184 ~~v~pG~~~t~~~~~~~~-------~~~~~~~~~~~---------~p~~~~~~~~~va~~~~~l~~~~~~--~i~G~~i~ 245 (254)
T PRK08085 184 NGIAPGYFKTEMTKALVE-------DEAFTAWLCKR---------TPAARWGDPQELIGAAVFLSSKASD--FVNGHLLF 245 (254)
T ss_pred EEEEeCCCCCcchhhhcc-------CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc--CCcCCEEE
Confidence 999999987764322111 01111111111 0112355679999988887754321 12455555
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 246 ~dgg 249 (254)
T PRK08085 246 VDGG 249 (254)
T ss_pred ECCC
Confidence 5444
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=141.92 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=134.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||||+||+++++.|++.|.+ |+++.|+. ++++++.+ .+.. ...++.++.+|+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~---Vi~~~R~~------~~l~~~~~-----~l~~-----~~~~~~~~~~Dl 98 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGAT---VVAVARRE------DLLDAVAD-----RITR-----AGGDAMAVPCDL 98 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHh-----cCCcEEEEEccC
Confidence 56799999999999999999999999876 88888863 22222211 1110 224578899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh---------hHHHHHHHHHhHHHHHHHHHHHH----HcCCCc
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF---------DEALKKAVLLNTRGTKMMLSLAK----EMKHLE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k 239 (614)
++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+. + .+..
T Consensus 99 ~d~~------~v~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~~~g 171 (293)
T PRK05866 99 SDLD------AVDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLE-RGDG 171 (293)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc
Confidence 9866 5666655 78999999986421 13456678999999888877654 3 3557
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+..... | ..+.|+.||+..+.+++..+. .|
T Consensus 172 ~iv~isS~~~~~~~~---------p----------------------------~~~~Y~asKaal~~l~~~la~e~~~~g 214 (293)
T PRK05866 172 HIINVATWGVLSEAS---------P----------------------------LFSVYNASKAALSAVSRVIETEWGDRG 214 (293)
T ss_pred EEEEECChhhcCCCC---------C----------------------------CcchHHHHHHHHHHHHHHHHHHhcccC
Confidence 899999975432100 0 125899999999888776544 58
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
+++++++||.|-.+...+. .. .. ....+..+++|+.++.++.+
T Consensus 215 I~v~~v~pg~v~T~~~~~~-----------------~~-------~~---~~~~~~pe~vA~~~~~~~~~ 257 (293)
T PRK05866 215 VHSTTLYYPLVATPMIAPT-----------------KA-------YD---GLPALTADEAAEWMVTAART 257 (293)
T ss_pred cEEEEEEcCcccCcccccc-----------------cc-------cc---CCCCCCHHHHHHHHHHHHhc
Confidence 9999999997744321100 00 00 01236789999999888864
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=136.92 Aligned_cols=227 Identities=15% Similarity=0.210 Sum_probs=141.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||.+++++|++.|++ |.+..+.... ...+...++ .. ...++..+.+|+
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~---v~~~~~~~~~-~~~~~~~~~---------~~-----~~~~~~~~~~D~ 63 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGAL---VAIHYGNRKE-EAEETVYEI---------QS-----NGGSAFSIGANL 63 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCe---EEEEcCCCHH-HHHHHHHHH---------Hh-----cCCceEEEeccc
Confidence 45799999999999999999999999876 5555432211 111111111 11 223567889999
Q ss_pred CCCCCCCCHHHHHHHh---------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-cCCCceEE
Q psy6053 180 EADELAIKESDRQLLA---------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-MKHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~---------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~V 242 (614)
++.+ ++ ....+.+. .++|++||+||.... .+.++..+++|+.|+..+++.+.. +.+..++|
T Consensus 64 ~~~~-~~-~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv 141 (252)
T PRK12747 64 ESLH-GV-EALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRII 141 (252)
T ss_pred CCHH-HH-HHHHHHHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEE
Confidence 9865 00 01111221 168999999995321 234677889999999999987765 22335899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... + ...|+.||+..+.+++..+. +|+++
T Consensus 142 ~isS~~~~~~~~---~-----------------------------------~~~Y~~sKaa~~~~~~~la~e~~~~girv 183 (252)
T PRK12747 142 NISSAATRISLP---D-----------------------------------FIAYSMTKGAINTMTFTLAKQLGARGITV 183 (252)
T ss_pred EECCcccccCCC---C-----------------------------------chhHHHHHHHHHHHHHHHHHHHhHcCCEE
Confidence 999996532210 0 15799999999988877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..+.||.|.++.... +. ..+ ......+.. .....+...+|+|+++..++..... -..+.++.
T Consensus 184 n~v~Pg~v~t~~~~~---~~---~~~--~~~~~~~~~--------~~~~~~~~~~dva~~~~~l~s~~~~--~~~G~~i~ 245 (252)
T PRK12747 184 NAILPGFIKTDMNAE---LL---SDP--MMKQYATTI--------SAFNRLGEVEDIADTAAFLASPDSR--WVTGQLID 245 (252)
T ss_pred EEEecCCccCchhhh---cc---cCH--HHHHHHHhc--------CcccCCCCHHHHHHHHHHHcCcccc--CcCCcEEE
Confidence 999999987653211 00 011 111111100 0112367889999999887653321 12466776
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 246 vdgg 249 (252)
T PRK12747 246 VSGG 249 (252)
T ss_pred ecCC
Confidence 6554
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=137.66 Aligned_cols=224 Identities=12% Similarity=0.108 Sum_probs=143.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|++ |+++.|+... ..+.+.+. ++. ...++..+.+|+
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~---v~~~~r~~~~--~~~~~~~~--------l~~-----~~~~~~~~~~D~ 67 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGAD---VALFDLRTDD--GLAETAEH--------IEA-----AGRRAIQIAADV 67 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCcch--HHHHHHHH--------HHh-----cCCceEEEEcCC
Confidence 46899999999999999999999999876 7888886432 11111111 110 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+++.+.. + .+..++|
T Consensus 68 ~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 141 (254)
T PRK06114 68 TSKA------DLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIV 141 (254)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEE
Confidence 9876 5555443 47999999997532 345677899999999887776543 1 2446899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+...... .....|+.||+..+.+++..+. +|+++
T Consensus 142 ~isS~~~~~~~~~------------------------------------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v 185 (254)
T PRK06114 142 NIASMSGIIVNRG------------------------------------LLQAHYNASKAGVIHLSKSLAMEWVGRGIRV 185 (254)
T ss_pred EECchhhcCCCCC------------------------------------CCcchHHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 9999864321100 0015799999988888777654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
.+++||.|.++.... + ............. +. .-+...+|++++++.++..... -..+.+..
T Consensus 186 ~~v~PG~i~t~~~~~-~-------~~~~~~~~~~~~~-------p~--~r~~~~~dva~~~~~l~s~~~~--~~tG~~i~ 246 (254)
T PRK06114 186 NSISPGYTATPMNTR-P-------EMVHQTKLFEEQT-------PM--QRMAKVDEMVGPAVFLLSDAAS--FCTGVDLL 246 (254)
T ss_pred EEEeecCccCccccc-c-------cchHHHHHHHhcC-------CC--CCCcCHHHHHHHHHHHcCcccc--CcCCceEE
Confidence 999999886653210 0 0001111111110 10 1245679999998887754321 13566776
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 247 ~dgg 250 (254)
T PRK06114 247 VDGG 250 (254)
T ss_pred ECcC
Confidence 6654
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-14 Score=140.60 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=119.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|++ |+++.|+.. .+++..+ + ...++.++.+|+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~---v~~~~r~~~------~~~~~~~---------~----~~~~~~~~~~D~ 61 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGAR---VAITGRDPA------SLEAARA---------E----LGESALVIRADA 61 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEecCCHH------HHHHHHH---------H----hCCceEEEEecC
Confidence 45789999999999999999999999875 888888532 2222111 0 224678889999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
+++. +...+. .++|+|||+||.... .+.++..+++|+.|+.++++.+... ....++|++
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~ 135 (249)
T PRK06500 62 GDVA------AQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLN 135 (249)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9865 443333 368999999997542 2456678999999999999999752 233577888
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+... .| ..+.|+.||+..|.+++..+. .|+++++
T Consensus 136 ~S~~~~~~----------~~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 177 (249)
T PRK06500 136 GSINAHIG----------MP----------------------------NSSVYAASKAALLSLAKTLSGELLPRGIRVNA 177 (249)
T ss_pred echHhccC----------CC----------------------------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 77643211 00 016899999999999966543 5899999
Q ss_pred eecceeeccc
Q psy6053 321 LRPSIIIPVW 330 (614)
Q Consensus 321 vRp~~I~g~~ 330 (614)
+|||.+.++.
T Consensus 178 i~pg~~~t~~ 187 (249)
T PRK06500 178 VSPGPVQTPL 187 (249)
T ss_pred EeeCcCCCHH
Confidence 9999998763
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=136.46 Aligned_cols=195 Identities=19% Similarity=0.093 Sum_probs=134.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++++||||||+||++++++|+++|.+ |.++.|... +++++.. .+....| ..++.++.+|+++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~---v~~~~r~~~------~~~~~~~-----~~~~~~~---~~~~~~~~~D~~~ 64 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRD---LALCARRTD------RLEELKA-----ELLARYP---GIKVAVAALDVND 64 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCE---EEEEeCCHH------HHHHHHH-----HHHhhCC---CceEEEEEcCCCC
Confidence 578999999999999999999999864 888888642 2222211 1111112 2578899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++.+... .+..++|++
T Consensus 65 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ 138 (248)
T PRK08251 65 HD------QVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLI 138 (248)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 75 5544443 68999999986432 2345667899999999888876421 356789999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... +.+ ...|+.||+..+.+...... .++++++
T Consensus 139 sS~~~~~~~--------~~~-----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 181 (248)
T PRK08251 139 SSVSAVRGL--------PGV-----------------------------KAAYAASKAGVASLGEGLRAELAKTPIKVST 181 (248)
T ss_pred eccccccCC--------CCC-----------------------------cccHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 997542211 000 15799999998888876654 4799999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
++||.+.++... +. .. ....++.+++|++++.++..
T Consensus 182 v~pg~v~t~~~~---------------------~~-----~~---~~~~~~~~~~a~~i~~~~~~ 217 (248)
T PRK08251 182 IEPGYIRSEMNA---------------------KA-----KS---TPFMVDTETGVKALVKAIEK 217 (248)
T ss_pred EecCcCcchhhh---------------------cc-----cc---CCccCCHHHHHHHHHHHHhc
Confidence 999988554211 00 00 11257789999999888854
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=138.46 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=130.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-++++|+||||||+||++++++|++.| .+ |+++.|+.... ..+-.+++ +.. ...+++++.+|
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~---V~~~~r~~~~~-~~~~~~~l---------~~~----~~~~v~~~~~D 68 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPAR---VVLAALPDDPR-RDAAVAQM---------KAA----GASSVEVIDFD 68 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCe---EEEEeCCcchh-HHHHHHHH---------Hhc----CCCceEEEEec
Confidence 357899999999999999999999985 44 88888875420 11111222 100 12368899999
Q ss_pred CCCCCCCCCHHHHHHHh------ccccEEEEcccccChh-------HHHHHHHHHhHHHHHH----HHHHHHHcCCCceE
Q psy6053 179 AEADELAIKESDRQLLA------SEVDIMIHGAATIRFD-------EALKKAVLLNTRGTKM----MLSLAKEMKHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~------~~vd~ViH~AA~v~~~-------~~~~~~~~~Nv~gt~~----ll~la~~~~~~k~~ 241 (614)
+++++ +.+.++ .++|++||+||..... ....+.+++|+.|+.. ++.++++ .+..++
T Consensus 69 ~~~~~------~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~-~~~~~i 141 (253)
T PRK07904 69 ALDTD------SHPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRA-QGFGQI 141 (253)
T ss_pred CCChH------HHHHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHh-cCCceE
Confidence 99865 433333 2699999999875321 1122468999998876 5566666 356899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..+.+.+.... .|++
T Consensus 142 v~isS~~g~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~l~~el~~~~i~ 183 (253)
T PRK07904 142 IAMSSVAGERVR----------R----------------------------SNFVYGSTKAGLDGFYLGLGEALREYGVR 183 (253)
T ss_pred EEEechhhcCCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 999998642210 0 014699999988766554432 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+++++||.|..+... . .. .. ...++.+++|+.++.++.+.
T Consensus 184 v~~v~Pg~v~t~~~~-------~-----------~~-------~~----~~~~~~~~~A~~i~~~~~~~ 223 (253)
T PRK07904 184 VLVVRPGQVRTRMSA-------H-----------AK-------EA----PLTVDKEDVAKLAVTAVAKG 223 (253)
T ss_pred EEEEeeCceecchhc-------c-----------CC-------CC----CCCCCHHHHHHHHHHHHHcC
Confidence 999999988653210 0 00 00 11468899999999888653
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=137.49 Aligned_cols=217 Identities=15% Similarity=0.165 Sum_probs=143.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++++||||+|+||..+++.|++.|.. |+++.|... ++++..+ .++. ...++.++.+|+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~---vi~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~D~ 63 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAK---LALIDLNQE------KLEEAVA-----ECGA-----LGTEVRGYAANV 63 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHh-----cCCceEEEEcCC
Confidence 45789999999999999999999999865 788887642 2221111 0110 224688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----------------hhHHHHHHHHHhHHHHHHHHHHHHH--
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----------------FDEALKKAVLLNTRGTKMMLSLAKE-- 234 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----------------~~~~~~~~~~~Nv~gt~~ll~la~~-- 234 (614)
++++ ..+++++ .+|+|||+|+... ..+.+...+++|+.|+..+++.+..
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l 137 (253)
T PRK08217 64 TDEE------DVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKM 137 (253)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9865 4444333 4799999998532 1244566788999999877765443
Q ss_pred --cCCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh
Q psy6053 235 --MKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM 312 (614)
Q Consensus 235 --~~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~ 312 (614)
...-..++++||...++.. ....|+.||+..|.+++..+
T Consensus 138 ~~~~~~~~iv~~ss~~~~~~~---------------------------------------~~~~Y~~sK~a~~~l~~~la 178 (253)
T PRK08217 138 IESGSKGVIINISSIARAGNM---------------------------------------GQTNYSASKAGVAAMTVTWA 178 (253)
T ss_pred HhcCCCeEEEEEccccccCCC---------------------------------------CCchhHHHHHHHHHHHHHHH
Confidence 1122468999987543211 02579999999999887765
Q ss_pred h----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhh
Q psy6053 313 N----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388 (614)
Q Consensus 313 ~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~ 388 (614)
. .+++++.++||.+.++..... .+ ........+. ....+.+++|+|+++..++....
T Consensus 179 ~~~~~~~i~v~~v~pg~v~t~~~~~~--------~~-~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~- 239 (253)
T PRK08217 179 KELARYGIRVAAIAPGVIETEMTAAM--------KP-EALERLEKMI---------PVGRLGEPEEIAHTVRFIIENDY- 239 (253)
T ss_pred HHHHHcCcEEEEEeeCCCcCcccccc--------CH-HHHHHHHhcC---------CcCCCcCHHHHHHHHHHHHcCCC-
Confidence 4 589999999999876543211 11 1111111111 11235688999999998885432
Q ss_pred cCCCCccEEEeccC
Q psy6053 389 QKEHRQSIVHLTSS 402 (614)
Q Consensus 389 ~~~~~~~vyni~~~ 402 (614)
..+.++++.++
T Consensus 240 ---~~g~~~~~~gg 250 (253)
T PRK08217 240 ---VTGRVLEIDGG 250 (253)
T ss_pred ---cCCcEEEeCCC
Confidence 36789998876
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-13 Score=134.35 Aligned_cols=214 Identities=14% Similarity=0.150 Sum_probs=143.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+++||||+|+||.++++.|++.|++ |+++.|..... ...++.++.+|+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~---v~~~~r~~~~~-------------------------~~~~~~~~~~D~ 54 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQ---VYGVDKQDKPD-------------------------LSGNFHFLQLDL 54 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCE---EEEEeCCcccc-------------------------cCCcEEEEECCh
Confidence 56789999999999999999999999876 77888864321 224678899999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeCce
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHISTAY 248 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST~~ 248 (614)
+++ -++..+....+|+|||+|+... + .+.++..+++|+.|+.++++.+... .+..++|++||.+
T Consensus 55 ~~~-----~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 129 (235)
T PRK06550 55 SDD-----LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIA 129 (235)
T ss_pred HHH-----HHHHHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChh
Confidence 886 1233344467999999998531 1 3456778999999999999887641 2345899999986
Q ss_pred eccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecc
Q psy6053 249 CHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPS 324 (614)
Q Consensus 249 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~ 324 (614)
+..... ....|+.+|...+.+.+..+. +|+++++++||
T Consensus 130 ~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg 171 (235)
T PRK06550 130 SFVAGG--------------------------------------GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPG 171 (235)
T ss_pred hccCCC--------------------------------------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence 532110 125799999988877766554 58999999999
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.|.++.... .+. ............ ....+...+|+|++++.++..... ...+.++.+.++
T Consensus 172 ~v~t~~~~~--~~~-----~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~s~~~~--~~~g~~~~~~gg 231 (235)
T PRK06550 172 AVKTPMTAA--DFE-----PGGLADWVARET---------PIKRWAEPEEVAELTLFLASGKAD--YMQGTIVPIDGG 231 (235)
T ss_pred CccCccccc--ccC-----chHHHHHHhccC---------CcCCCCCHHHHHHHHHHHcChhhc--cCCCcEEEECCc
Confidence 987664321 110 111111111111 112356779999999988854331 124566666544
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-13 Score=137.42 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=146.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||+|+||.+++++|++.|.+ |+++.|.... .+++.+.++ . ...++.++.+|+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~---vv~~~r~~~~---~~~~~~~l~--------~-----~~~~~~~~~~D~ 69 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGAS---VVVSDINADA---ANHVVDEIQ--------Q-----LGGQAFACRCDI 69 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEeCCHHH---HHHHHHHHH--------h-----cCCcEEEEEccC
Confidence 45899999999999999999999999876 7777775321 222221111 0 224678889999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +..++++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 70 ~~~~------~i~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 143 (255)
T PRK06113 70 TSEQ------ELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILT 143 (255)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEE
Confidence 9865 5544433 57999999996432 2456677899999999999998631 23458999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... .....|+.||+..+.+++..+. .|+.+.
T Consensus 144 isS~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~ 185 (255)
T PRK06113 144 ITSMAAENKN--------------------------------------INMTSYASSKAAASHLVRNMAFDLGEKNIRVN 185 (255)
T ss_pred EecccccCCC--------------------------------------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 9998653211 0125799999999999988754 578999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
++.||.+..+... ....+ .......+.. ....+...+|++++++.++..... -..++++++
T Consensus 186 ~v~pg~~~t~~~~-------~~~~~-~~~~~~~~~~---------~~~~~~~~~d~a~~~~~l~~~~~~--~~~G~~i~~ 246 (255)
T PRK06113 186 GIAPGAILTDALK-------SVITP-EIEQKMLQHT---------PIRRLGQPQDIANAALFLCSPAAS--WVSGQILTV 246 (255)
T ss_pred EEecccccccccc-------cccCH-HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcccc--CccCCEEEE
Confidence 9999988544211 00111 1111111110 112246789999999988753321 125778888
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 247 ~gg 249 (255)
T PRK06113 247 SGG 249 (255)
T ss_pred CCC
Confidence 776
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=137.84 Aligned_cols=214 Identities=13% Similarity=0.078 Sum_probs=144.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||+++++.|++.|.+ |+++.|.... +. ...++.++.+|+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~---v~~~~r~~~~--------~~----------------~~~~~~~~~~D~ 56 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGAT---VVVCGRRAPE--------TV----------------DGRPAEFHAADV 56 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCChhh--------hh----------------cCCceEEEEccC
Confidence 46899999999999999999999999875 8888886432 00 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~ 241 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+..+++.+.. + .+..++
T Consensus 57 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~i 130 (252)
T PRK07856 57 RDPD------QVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSI 130 (252)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9865 5666554 46999999985421 245677899999999999998764 1 133589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCE
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPC 318 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~ 318 (614)
|++||..+.... | ....|+.||+..|.+++.... ..+.+
T Consensus 131 i~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~l~~~la~e~~~~i~v 172 (252)
T PRK07856 131 VNIGSVSGRRPS----------P----------------------------GTAAYGAAKAGLLNLTRSLAVEWAPKVRV 172 (252)
T ss_pred EEEcccccCCCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 999998653211 0 016899999999999987765 23888
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|..+..... .+..........+. + ...+...+++|++++.++..... -..+.++.
T Consensus 173 ~~i~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~-------~--~~~~~~p~~va~~~~~L~~~~~~--~i~G~~i~ 234 (252)
T PRK07856 173 NAVVVGLVRTEQSELH-------YGDAEGIAAVAATV-------P--LGRLATPADIAWACLFLASDLAS--YVSGANLE 234 (252)
T ss_pred EEEEeccccChHHhhh-------ccCHHHHHHHhhcC-------C--CCCCcCHHHHHHHHHHHcCcccC--CccCCEEE
Confidence 8999998865432110 01011111111111 0 11234679999998887754321 13577778
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 235 vdgg 238 (252)
T PRK07856 235 VHGG 238 (252)
T ss_pred ECCC
Confidence 8766
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=138.20 Aligned_cols=220 Identities=15% Similarity=0.099 Sum_probs=141.7
Q ss_pred cCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCc------CHHHH--HHHHHhChhhHHhhhhcccccc
Q psy6053 100 FTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGK------NARQR--IEELFASPLFNLLKSVHGQKII 169 (614)
Q Consensus 100 ~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~------~~~~R--l~~~~~~~~f~~l~~~~p~~~~ 169 (614)
.++++|||||||| .||.+++++|++.|.+ |+++.|+..+. ...+. +.+. + .. ..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~---vi~~~r~~~~~~~~~~~~~~~~~~~~~~--------~----~~-~~ 66 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGID---IFFTYWSPYDKTMPWGMHDKEPVLLKEE--------I----ES-YG 66 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCc---EEEEcCCccccccccccchhhHHHHHHH--------H----Hh-cC
Confidence 3578999999996 6999999999999876 88888873211 00111 1111 1 11 23
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
.++.++.+|+++++ ++..++ ..+|+|||+||.... .+.++..+++|+.|+..+++.+...
T Consensus 67 ~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 140 (256)
T PRK12748 67 VRCEHMEIDLSQPY------APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQ 140 (256)
T ss_pred CeEEEEECCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46899999999865 444433 357999999986422 2345677899999999999887641
Q ss_pred ---CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh
Q psy6053 236 ---KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM 312 (614)
Q Consensus 236 ---~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~ 312 (614)
....++|++||..+..+.. . ...|+.||+..|.+++..+
T Consensus 141 ~~~~~~~~iv~~ss~~~~~~~~---~-----------------------------------~~~Y~~sK~a~~~~~~~la 182 (256)
T PRK12748 141 YDGKAGGRIINLTSGQSLGPMP---D-----------------------------------ELAYAATKGAIEAFTKSLA 182 (256)
T ss_pred hhhcCCeEEEEECCccccCCCC---C-----------------------------------chHHHHHHHHHHHHHHHHH
Confidence 1345899999986533210 0 1579999999999887765
Q ss_pred h----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhh
Q psy6053 313 N----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388 (614)
Q Consensus 313 ~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~ 388 (614)
. .+++++.++||.+..+.. .. ...... ... .+ ...+...+++++++..++.....
T Consensus 183 ~e~~~~~i~v~~i~Pg~~~t~~~-----------~~-~~~~~~-~~~---~~-----~~~~~~~~~~a~~~~~l~~~~~~ 241 (256)
T PRK12748 183 PELAEKGITVNAVNPGPTDTGWI-----------TE-ELKHHL-VPK---FP-----QGRVGEPVDAARLIAFLVSEEAK 241 (256)
T ss_pred HHHHHhCeEEEEEEeCcccCCCC-----------Ch-hHHHhh-hcc---CC-----CCCCcCHHHHHHHHHHHhCcccc
Confidence 4 589999999997643311 00 000000 000 00 01244568999998876654321
Q ss_pred cCCCCccEEEeccC
Q psy6053 389 QKEHRQSIVHLTSS 402 (614)
Q Consensus 389 ~~~~~~~vyni~~~ 402 (614)
...+.++++.++
T Consensus 242 --~~~g~~~~~d~g 253 (256)
T PRK12748 242 --WITGQVIHSEGG 253 (256)
T ss_pred --cccCCEEEecCC
Confidence 125778888655
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9e-14 Score=140.92 Aligned_cols=224 Identities=14% Similarity=0.112 Sum_probs=144.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|.+ |+++.|..... ...++.++.+|+
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~---v~~~~r~~~~~-------------------------~~~~~~~~~~D~ 58 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGAR---VVTTARSRPDD-------------------------LPEGVEFVAADL 58 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCCE---EEEEeCChhhh-------------------------cCCceeEEecCC
Confidence 56899999999999999999999999876 88898874321 224678899999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccC---------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIR---------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~---------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
++++ +.+.++ ..+|+|||+||... -.+.++..+++|+.|+.++++.+... .+..+
T Consensus 59 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ 132 (260)
T PRK06523 59 TTAE------GCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGV 132 (260)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcE
Confidence 9865 444333 35799999998532 13456778999999998876655321 24468
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.... +. ....|+.||...|.+++..+. .|+
T Consensus 133 ii~isS~~~~~~~--------~~-----------------------------~~~~Y~~sK~a~~~l~~~~a~~~~~~gi 175 (260)
T PRK06523 133 IIHVTSIQRRLPL--------PE-----------------------------STTAYAAAKAALSTYSKSLSKEVAPKGV 175 (260)
T ss_pred EEEEecccccCCC--------CC-----------------------------CcchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999998653211 00 015799999999988877764 589
Q ss_pred CEEEeecceeecccCCCC-ccccCCC-CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 317 PCLMLRPSIIIPVWREPL-PGWTDNI-NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~-~gw~d~~-~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
.+.+++||.|.++..... +.+.+.. ..+......+.+.. ...+ ...+...+|+|+++..++..... ...+
T Consensus 176 ~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-----~~~~~~~~~va~~~~~l~s~~~~--~~~G 247 (260)
T PRK06523 176 RVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSL-GGIP-----LGRPAEPEEVAELIAFLASDRAA--SITG 247 (260)
T ss_pred EEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHh-ccCc-----cCCCCCHHHHHHHHHHHhCcccc--cccC
Confidence 999999999976532110 0000000 00011111111000 0000 11244678999999888754321 1256
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.++++.++
T Consensus 248 ~~~~vdgg 255 (260)
T PRK06523 248 TEYVIDGG 255 (260)
T ss_pred ceEEecCC
Confidence 78888766
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-13 Score=135.70 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=140.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+.+|+++||||+|+||+.+++.|++.|++ |+++.|... +..+++ ...++.++.+|+
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~---v~~~~~~~~-----~~~~~l----------------~~~~~~~~~~Dl 60 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAK---VAVLYNSAE-----NEAKEL----------------REKGVFTIKCDV 60 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCcH-----HHHHHH----------------HhCCCeEEEecC
Confidence 46799999999999999999999999876 666665432 112221 112477899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHH----HHHHHHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMM----LSLAKEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~l----l~la~~~~~~k~~ 241 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+..+ +...++ .+..++
T Consensus 61 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-~~~g~i 133 (255)
T PRK06463 61 GNRD------QVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKL-SKNGAI 133 (255)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHh-cCCcEE
Confidence 9876 5555543 57999999987421 345667899999996555 444443 245689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... + ....|+.||+..+.+++..+. .|++
T Consensus 134 v~isS~~~~~~~~---~----------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~~i~ 176 (255)
T PRK06463 134 VNIASNAGIGTAA---E----------------------------------GTTFYAITKAGIIILTRRLAFELGKYGIR 176 (255)
T ss_pred EEEcCHHhCCCCC---C----------------------------------CccHhHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999986542110 0 014699999999988887764 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|-.+....... . ............. .....+...+++|++++.++..... ...+.++
T Consensus 177 v~~i~Pg~v~t~~~~~~~~---~-~~~~~~~~~~~~~---------~~~~~~~~~~~va~~~~~l~s~~~~--~~~G~~~ 241 (255)
T PRK06463 177 VNAVAPGWVETDMTLSGKS---Q-EEAEKLRELFRNK---------TVLKTTGKPEDIANIVLFLASDDAR--YITGQVI 241 (255)
T ss_pred EEEEeeCCCCCchhhcccC---c-cchHHHHHHHHhC---------CCcCCCcCHHHHHHHHHHHcChhhc--CCCCCEE
Confidence 9999999874432110000 0 0000011111110 1112346789999999988754331 1357788
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 242 ~~dgg 246 (255)
T PRK06463 242 VADGG 246 (255)
T ss_pred EECCC
Confidence 88766
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-14 Score=140.69 Aligned_cols=221 Identities=15% Similarity=0.143 Sum_probs=144.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|++|||||||+||.+++++|++.|++ |++..|+... .+.+.+. ++. ...++.++.+|+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~---~~~~~~~--------l~~-----~~~~~~~~~~D~ 67 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQ---VAIAARHLDA---LEKLADE--------IGT-----SGGKVVPVCCDV 67 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCHHH---HHHHHHH--------HHh-----cCCeEEEEEccC
Confidence 46899999999999999999999999876 7888886321 1222111 111 224688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~ 241 (614)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+ -.++
T Consensus 68 ~~~~------~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~i 141 (253)
T PRK05867 68 SQHQ------QVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVI 141 (253)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEE
Confidence 9876 5555443 68999999997532 2456678899999999999887541 11 2468
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||.++..... | .....|+.||+..+.+++..+. +|++
T Consensus 142 v~~sS~~~~~~~~---------~---------------------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~ 185 (253)
T PRK05867 142 INTASMSGHIINV---------P---------------------------QQVSHYCASKAAVIHLTKAMAVELAPHKIR 185 (253)
T ss_pred EEECcHHhcCCCC---------C---------------------------CCccchHHHHHHHHHHHHHHHHHHhHhCeE
Confidence 9998875421100 0 0015799999999999887754 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|-.+..++. . .......... + .-.+...+|+|+++..++..... ...+.+.
T Consensus 186 vn~i~PG~v~t~~~~~~-------~---~~~~~~~~~~-------~--~~r~~~p~~va~~~~~L~s~~~~--~~tG~~i 244 (253)
T PRK05867 186 VNSVSPGYILTELVEPY-------T---EYQPLWEPKI-------P--LGRLGRPEELAGLYLYLASEASS--YMTGSDI 244 (253)
T ss_pred EEEeecCCCCCcccccc-------h---HHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHcCcccC--CcCCCeE
Confidence 99999999854432111 0 1111111110 1 11246789999999888754321 1256677
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 245 ~vdgG 249 (253)
T PRK05867 245 VIDGG 249 (253)
T ss_pred EECCC
Confidence 66654
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-14 Score=146.29 Aligned_cols=199 Identities=17% Similarity=0.117 Sum_probs=120.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|+||||||+||.++++.|++.|++ |+++.|+.. +.++..+ .+. . ...++.++.+|++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~---V~~~~r~~~------~~~~~~~-----~l~----~-~~~~~~~~~~Dl~ 65 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWH---VIMACRNLK------KAEAAAQ-----ELG----I-PPDSYTIIHIDLG 65 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCE---EEEEECCHH------HHHHHHH-----Hhh----c-cCCceEEEEecCC
Confidence 5789999999999999999999999865 888888632 2222111 010 0 1246889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---CC--Cce
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---KH--LEL 240 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~--~k~ 240 (614)
+++ +++.+++ .+|+|||+||... -.+.++..+++|+.|+.++++++... .+ ..+
T Consensus 66 ~~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~r 139 (322)
T PRK07453 66 DLD------SVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPR 139 (322)
T ss_pred CHH------HHHHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCce
Confidence 866 5555554 4899999999532 12456778999999999998877642 11 358
Q ss_pred EEEEeCceeccCC--cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-----
Q psy6053 241 FVHISTAYCHLQE--KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----- 313 (614)
Q Consensus 241 ~V~vST~~~~~~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----- 313 (614)
+|++||...+... .... .+.+.+..++........ ......... .....+.|+.||...+.+.++..+
T Consensus 140 iV~vsS~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~Y~~SK~a~~~~~~~la~~~~~~ 214 (322)
T PRK07453 140 LVILGTVTANPKELGGKIP---IPAPADLGDLSGFEAGFK-APISMADGK-KFKPGKAYKDSKLCNMLTMRELHRRYHES 214 (322)
T ss_pred EEEEcccccCccccCCccC---CCCccchhhhhcchhccc-ccccccCcc-CCCccchhhHhHHHHHHHHHHHHHhhccc
Confidence 9999997543211 0000 000111100000000000 000000000 001126899999987766655543
Q ss_pred CCCCEEEeecceeecc
Q psy6053 314 NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~ 329 (614)
.|++++.+|||.|+++
T Consensus 215 ~gi~v~~v~PG~v~~t 230 (322)
T PRK07453 215 TGITFSSLYPGCVADT 230 (322)
T ss_pred CCeEEEEecCCcccCC
Confidence 3799999999999765
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=137.22 Aligned_cols=214 Identities=13% Similarity=0.026 Sum_probs=143.1
Q ss_pred EEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCCC
Q psy6053 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELA 185 (614)
Q Consensus 106 LITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lG 185 (614)
+||||||++|+.++++|++.|.+ |+++.|+.. ++++... .++ ...+++++.+|+++++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~---v~~~~r~~~------~~~~~~~-----~~~------~~~~~~~~~~Dl~~~~-- 58 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGAR---VTIASRSRD------RLAAAAR-----ALG------GGAPVRTAALDITDEA-- 58 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHh------cCCceEEEEccCCCHH--
Confidence 69999999999999999999876 888888632 2222110 010 1246888999999876
Q ss_pred CCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcc
Q psy6053 186 IKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKV 255 (614)
Q Consensus 186 Ls~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~ 255 (614)
++..+++ .+|++||+|+.... .+.++..+++|+.++.+++++... .+..++|++||..+.....
T Consensus 59 ----~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~g~iv~~ss~~~~~~~~- 132 (230)
T PRK07041 59 ----AVDAFFAEAGPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARI-APGGSLTFVSGFAAVRPSA- 132 (230)
T ss_pred ----HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhh-cCCeEEEEECchhhcCCCC-
Confidence 6777765 47999999986431 245677899999999999995544 5668999999987643210
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecceeecccCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~I~g~~~~p 333 (614)
.-+.|+.||+..|.+++..+. .+++++.++||.+-.+....
T Consensus 133 -------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~ 175 (230)
T PRK07041 133 -------------------------------------SGVLQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSK 175 (230)
T ss_pred -------------------------------------cchHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHh
Confidence 015799999999999988765 36788888998774432110
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.+ . .....++........ . .-....+|+|+++..++.... ..+++|++.++
T Consensus 176 ~~---~--~~~~~~~~~~~~~~~----~-----~~~~~~~dva~~~~~l~~~~~----~~G~~~~v~gg 226 (230)
T PRK07041 176 LA---G--DAREAMFAAAAERLP----A-----RRVGQPEDVANAILFLAANGF----TTGSTVLVDGG 226 (230)
T ss_pred hh---c--cchHHHHHHHHhcCC----C-----CCCcCHHHHHHHHHHHhcCCC----cCCcEEEeCCC
Confidence 00 0 001112222211110 0 012356999999999886532 25789998876
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-13 Score=134.82 Aligned_cols=222 Identities=17% Similarity=0.156 Sum_probs=144.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||.+++++|++.|++ |+++.|.... .+.+.+. +. + ...++..+.+|+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~---Vi~~~r~~~~---~~~~~~~--------~~----~-~~~~~~~~~~D~ 66 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAH---VIVSSRKLDG---CQAVADA--------IV----A-AGGKAEALACHI 66 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHH--------HH----h-cCCeEEEEEcCC
Confidence 45789999999999999999999999875 8888885421 1222111 11 1 224577889999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++.+ +.+.+++ .+|+|||+|+... -.+.++..+++|+.|+..+++.+... .+..++
T Consensus 67 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~i 140 (252)
T PRK07035 67 GEME------QIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSI 140 (252)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEE
Confidence 9865 5554443 5899999998532 12446678899999998887766331 355789
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
+++||.++..... .-..|+.||+..|.+++.... +|++
T Consensus 141 v~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~ 182 (252)
T PRK07035 141 VNVASVNGVSPGD--------------------------------------FQGIYSITKAAVISMTKAFAKECAPFGIR 182 (252)
T ss_pred EEECchhhcCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhcCEE
Confidence 9999975432110 015799999999999988765 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|..+.... + .............. + ...+...+++|+++..++..... ...+.++
T Consensus 183 v~~i~PG~v~t~~~~~---~----~~~~~~~~~~~~~~-------~--~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~ 244 (252)
T PRK07035 183 VNALLPGLTDTKFASA---L----FKNDAILKQALAHI-------P--LRRHAEPSEMAGAVLYLASDASS--YTTGECL 244 (252)
T ss_pred EEEEeeccccCccccc---c----cCCHHHHHHHHccC-------C--CCCcCCHHHHHHHHHHHhCcccc--CccCCEE
Confidence 9999999885443211 1 11111111111111 0 11245678999999888765432 1256677
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 245 ~~dgg 249 (252)
T PRK07035 245 NVDGG 249 (252)
T ss_pred EeCCC
Confidence 66544
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=136.61 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=119.0
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+..++|+|+||||||+||..++++|++.|.+ |+++.|.... .+++.+- ++.. ...++.++.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~---Vi~~~r~~~~---~~~~~~~--------l~~~----~~~~~~~~~~ 69 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGAT---VILLGRTEEK---LEAVYDE--------IEAA----GGPQPAIIPL 69 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCc---EEEEeCCHHH---HHHHHHH--------HHhc----CCCCceEEEe
Confidence 3567899999999999999999999999875 8888886421 1222211 1110 2245778888
Q ss_pred CCCCCCCCCCHHHHHHHh-------ccccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCc
Q psy6053 178 DAEADELAIKESDRQLLA-------SEVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM---KHLE 239 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k 239 (614)
|+++.+ +++...+. ..+|+|||+||.... .+.++..+++|+.|+.++++.+... .+.+
T Consensus 70 d~~~~~----~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~ 145 (247)
T PRK08945 70 DLLTAT----PQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA 145 (247)
T ss_pred cccCCC----HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC
Confidence 886432 22333332 368999999986422 2456778999999988888876421 3567
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
+||++||..+..... .-..|+.||+..|.++..... .+
T Consensus 146 ~iv~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~ 187 (247)
T PRK08945 146 SLVFTSSSVGRQGRA--------------------------------------NWGAYAVSKFATEGMMQVLADEYQGTN 187 (247)
T ss_pred EEEEEccHhhcCCCC--------------------------------------CCcccHHHHHHHHHHHHHHHHHhcccC
Confidence 899999975432110 015799999999999887655 47
Q ss_pred CCEEEeecceeecc
Q psy6053 316 MPCLMLRPSIIIPV 329 (614)
Q Consensus 316 lp~~IvRp~~I~g~ 329 (614)
+++++++||.+-++
T Consensus 188 i~~~~v~pg~v~t~ 201 (247)
T PRK08945 188 LRVNCINPGGTRTA 201 (247)
T ss_pred EEEEEEecCCccCc
Confidence 88999999977543
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=135.64 Aligned_cols=219 Identities=11% Similarity=0.039 Sum_probs=142.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++|+||||||+||.+++++|++.|++ |+++.|.... ..+++.+.+ +. ...++..+.+|+++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~---V~~~~~~~~~--~~~~~~~~~--------~~-----~~~~~~~~~~Dl~~ 63 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD---IGITWHSDEE--GAKETAEEV--------RS-----HGVRAEIRQLDLSD 63 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCChH--HHHHHHHHH--------Hh-----cCCceEEEEccCCC
Confidence 579999999999999999999999876 6666654321 122222111 10 23468899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~V~ 243 (614)
++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+..+++++... ++-.++|+
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~ 137 (256)
T PRK12743 64 LP------EGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIIN 137 (256)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 76 5554443 58999999996431 2456778999999999999887652 11258999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||........ ....|+.+|...+.+++..+. +|++++
T Consensus 138 isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~ 179 (256)
T PRK12743 138 ITSVHEHTPLP--------------------------------------GASAYTAAKHALGGLTKAMALELVEHGILVN 179 (256)
T ss_pred EeeccccCCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 99975321110 015799999999988877654 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.+.++..... .. ........+. + .......+|+++++..++..... ...+.++.+
T Consensus 180 ~v~Pg~~~t~~~~~~--------~~-~~~~~~~~~~-------~--~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~~ 239 (256)
T PRK12743 180 AVAPGAIATPMNGMD--------DS-DVKPDSRPGI-------P--LGRPGDTHEIASLVAWLCSEGAS--YTTGQSLIV 239 (256)
T ss_pred EEEeCCccCcccccc--------Ch-HHHHHHHhcC-------C--CCCCCCHHHHHHHHHHHhCcccc--CcCCcEEEE
Confidence 999999876532110 00 1111111110 0 01134779999998887754321 124666766
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 240 dgg 242 (256)
T PRK12743 240 DGG 242 (256)
T ss_pred CCC
Confidence 555
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=139.18 Aligned_cols=226 Identities=13% Similarity=0.117 Sum_probs=143.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|++|||||||+||.++++.|++.|.+ |+++.|+ . ...+..+++ + + ...++.++.+|+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~---vi~~~r~-~--~~~~~~~~~---------~----~-~~~~~~~~~~Dl 63 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAY---VLAVDIA-E--AVSETVDKI---------K----S-NGGKAKAYHVDI 63 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCc-H--HHHHHHHHH---------H----h-cCCeEEEEEeec
Confidence 46899999999999999999999999876 8888886 2 112212221 1 0 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+ .++
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~i 136 (272)
T PRK08589 64 SDEQ------QVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSI 136 (272)
T ss_pred CCHH------HHHHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEE
Confidence 9875 5555443 47999999986421 2346678899999997777665432 23 589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+++..+. .|++
T Consensus 137 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~e~~~~gI~ 178 (272)
T PRK08589 137 INTSSFSGQAADL--------------------------------------YRSGYNAAKGAVINFTKSIAIEYGRDGIR 178 (272)
T ss_pred EEeCchhhcCCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999986432110 125799999999999887654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|..+......+. ........... ..... .+ ..-+...+++|++++.++..... ...+.++
T Consensus 179 v~~v~PG~v~T~~~~~~~~~-----~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~va~~~~~l~s~~~~--~~~G~~i 246 (272)
T PRK08589 179 ANAIAPGTIETPLVDKLTGT-----SEDEAGKTFRE-NQKWM--TP--LGRLGKPEEVAKLVVFLASDDSS--FITGETI 246 (272)
T ss_pred EEEEecCcccCchhhhhccc-----chhhHHHHHhh-hhhcc--CC--CCCCcCHHHHHHHHHHHcCchhc--CcCCCEE
Confidence 99999998865432111100 00000000000 00000 00 11245789999999888754321 1256677
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 247 ~vdgg 251 (272)
T PRK08589 247 RIDGG 251 (272)
T ss_pred EECCC
Confidence 66655
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=139.36 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=118.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|++|||||||+||+.++++|++.|.+ |+++.|+.. .++++.. .. ...++.++.+|++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~~---------~~---~~~~~~~~~~D~~~~ 60 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWR---VGAYDINEA------GLAALAA---------EL---GAGNAWTGALDVTDR 60 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCe---EEEEeCCHH------HHHHHHH---------Hh---cCCceEEEEecCCCH
Confidence 68999999999999999999999865 888888642 2222211 00 124688999999986
Q ss_pred CCCCCHHHHHHHhc--------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 183 ELAIKESDRQLLAS--------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
+ ++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 61 ~------~v~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~i 134 (260)
T PRK08267 61 A------AWDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINT 134 (260)
T ss_pred H------HHHHHHHHHHHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 6 5555443 56999999997532 2456778999999999999887531 245689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+..+.+...... .++++.+
T Consensus 135 sS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~ 176 (260)
T PRK08267 135 SSASAIYGQP--------------------------------------GLAVYSATKFAVRGLTEALDLEWRRHGIRVAD 176 (260)
T ss_pred CchhhCcCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 9985432110 015799999998888877653 5899999
Q ss_pred eecceeecc
Q psy6053 321 LRPSIIIPV 329 (614)
Q Consensus 321 vRp~~I~g~ 329 (614)
++||.+..+
T Consensus 177 i~pg~~~t~ 185 (260)
T PRK08267 177 VMPLFVDTA 185 (260)
T ss_pred EecCCcCCc
Confidence 999988544
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-13 Score=134.98 Aligned_cols=222 Identities=12% Similarity=0.111 Sum_probs=146.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||+|+||+.++++|++.|.. |+++.|... .++++.+ .++. ...++.++.+|+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~---v~~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~Dl 69 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAH---VLVNGRNAA------TLEAAVA-----ALRA-----AGGAAEALAFDI 69 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCe---EEEEeCCHH------HHHHHHH-----HHHh-----cCCceEEEEccC
Confidence 56899999999999999999999999865 888888642 1111110 1111 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V 242 (614)
++++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+.++.+.+.+ + .+..++|
T Consensus 70 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv 143 (256)
T PRK06124 70 ADEE------AVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRII 143 (256)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9865 5555544 46999999996431 245667899999999999876643 1 2567899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||...+.+++..+. .++++
T Consensus 144 ~~ss~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 185 (256)
T PRK06124 144 AITSIAGQVAR----------A----------------------------GDAVYPAAKQGLTGLMRALAAEFGPHGITS 185 (256)
T ss_pred EEeechhccCC----------C----------------------------CccHhHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 99998643211 0 015799999999888876554 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++...+ + ..+..+...+... . ....++++++++++++.++..... ...+..+.
T Consensus 186 ~~i~pg~v~t~~~~~---~----~~~~~~~~~~~~~-~--------~~~~~~~~~~~a~~~~~l~~~~~~--~~~G~~i~ 247 (256)
T PRK06124 186 NAIAPGYFATETNAA---M----AADPAVGPWLAQR-T--------PLGRWGRPEEIAGAAVFLASPAAS--YVNGHVLA 247 (256)
T ss_pred EEEEECCccCcchhh---h----ccChHHHHHHHhc-C--------CCCCCCCHHHHHHHHHHHcCcccC--CcCCCEEE
Confidence 999999987764221 0 0011111111111 0 012368899999999998865431 12455555
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 248 ~dgg 251 (256)
T PRK06124 248 VDGG 251 (256)
T ss_pred ECCC
Confidence 5443
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-13 Score=133.16 Aligned_cols=217 Identities=11% Similarity=0.095 Sum_probs=138.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|++|||||||++|++++++|++.|++ |+++.|+.. ++.++..+ .+. . ...++.++.+|++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~---v~~~~r~~~-----~~~~~~~~-----~~~----~-~~~~~~~~~~D~~~~ 62 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYR---VAANCGPNE-----ERAEAWLQ-----EQG----A-LGFDFRVVEGDVSSF 62 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCCH-----HHHHHHHH-----HHH----h-hCCceEEEEecCCCH
Confidence 57999999999999999999999876 788888421 22222111 000 0 224688999999986
Q ss_pred CCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHH----HHHcCCCceEEEE
Q psy6053 183 ELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSL----AKEMKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~l----a~~~~~~k~~V~v 244 (614)
. +++.++ ..+|+|||+||.... .+.+...+++|+.++..+++. +++ .+.+++|++
T Consensus 63 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~i 135 (242)
T TIGR01829 63 E------SCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRE-RGWGRIINI 135 (242)
T ss_pred H------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEEEEE
Confidence 5 554444 358999999986431 245567789999998775544 444 356789999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||.++..... ....|+.+|...+.+++..+. .|++++.
T Consensus 136 ss~~~~~~~~--------------------------------------~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~ 177 (242)
T TIGR01829 136 SSVNGQKGQF--------------------------------------GQTNYSAAKAGMIGFTKALAQEGATKGVTVNT 177 (242)
T ss_pred cchhhcCCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEE
Confidence 9975432110 015799999977777666543 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.+.++...+. .+ ..+.....+. ....+...+++++++..++.+... ...++++.+.
T Consensus 178 i~pg~~~t~~~~~~--------~~-~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~--~~~G~~~~~~ 237 (242)
T TIGR01829 178 ISPGYIATDMVMAM--------RE-DVLNSIVAQI---------PVGRLGRPEEIAAAVAFLASEEAG--YITGATLSIN 237 (242)
T ss_pred EeeCCCcCcccccc--------ch-HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhc--CccCCEEEec
Confidence 99998876543211 11 1221111111 111245668899988776644321 1257777777
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 238 gg 239 (242)
T TIGR01829 238 GG 239 (242)
T ss_pred CC
Confidence 65
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.6e-13 Score=133.18 Aligned_cols=224 Identities=14% Similarity=0.123 Sum_probs=146.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|.||+.++++|++.|++ |+++.|+.. +++++. +.++...| ..++.++.+|+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~---v~~~~r~~~------~~~~~~-----~~l~~~~~---~~~~~~~~~Dl 69 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGAD---VLIVARDAD------ALAQAR-----DELAEEFP---EREVHGLAADV 69 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCE---EEEEeCCHH------HHHHHH-----HHHHhhCC---CCeEEEEECCC
Confidence 46899999999999999999999999876 888888642 122111 11111111 25788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V 242 (614)
++++ +++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++.+.. + .+..++|
T Consensus 70 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii 143 (257)
T PRK09242 70 SDDE------DRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIV 143 (257)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 9865 5544443 5799999998632 1355677899999999999888753 1 2457899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||...+.+++..+. .|+++
T Consensus 144 ~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 185 (257)
T PRK09242 144 NIGSVSGLTHVR--------------------------------------SGAPYGMTKAALLQMTRNLAVEWAEDGIRV 185 (257)
T ss_pred EECccccCCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHHHhCeEE
Confidence 999986543211 015799999999998887653 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+.++||.|.++...+ +.. .+ .......... + ..-+...+|+++++..++..... ...+.+++
T Consensus 186 ~~i~Pg~i~t~~~~~---~~~---~~-~~~~~~~~~~-------~--~~~~~~~~~va~~~~~l~~~~~~--~~~g~~i~ 247 (257)
T PRK09242 186 NAVAPWYIRTPLTSG---PLS---DP-DYYEQVIERT-------P--MRRVGEPEEVAAAVAFLCMPAAS--YITGQCIA 247 (257)
T ss_pred EEEEECCCCCccccc---ccC---Ch-HHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHhCcccc--cccCCEEE
Confidence 999999987654321 111 11 1111111110 0 01133568999998887753321 12456666
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 248 ~~gg 251 (257)
T PRK09242 248 VDGG 251 (257)
T ss_pred ECCC
Confidence 6544
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-13 Score=134.51 Aligned_cols=223 Identities=16% Similarity=0.158 Sum_probs=142.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||.+++++|++.|++ |+++.|+... ++++.+ .++. ...++.++.+|+
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~---v~~~~r~~~~------~~~~~~-----~~~~-----~~~~~~~~~~D~ 64 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAK---VVVGARRQAE------LDQLVA-----EIRA-----EGGEAVALAGDV 64 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCHHH------HHHHHH-----HHHh-----cCCcEEEEEcCC
Confidence 45789999999999999999999999875 8888887432 221110 1111 224688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +.+.+++ .+|++||+||... + .+.++..+++|+.|+..+.+.+... .+..++
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~i 138 (254)
T PRK07478 65 RDEA------YAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSL 138 (254)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceE
Confidence 9876 5555554 6899999999642 1 1446778999999887776554321 245689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... | ....|+.||+..+.+++.... .|+.
T Consensus 139 v~~sS~~~~~~~~---------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 181 (254)
T PRK07478 139 IFTSTFVGHTAGF---------P----------------------------GMAAYAASKAGLIGLTQVLAAEYGAQGIR 181 (254)
T ss_pred EEEechHhhccCC---------C----------------------------CcchhHHHHHHHHHHHHHHHHHHhhcCEE
Confidence 9999986532100 0 015799999999988887655 4799
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|-.+.... + . ..+. ......... ....+...+++|++++.++..... -..+.++
T Consensus 182 v~~v~PG~v~t~~~~~---~-~--~~~~--~~~~~~~~~--------~~~~~~~~~~va~~~~~l~s~~~~--~~~G~~~ 243 (254)
T PRK07478 182 VNALLPGGTDTPMGRA---M-G--DTPE--ALAFVAGLH--------ALKRMAQPEEIAQAALFLASDAAS--FVTGTAL 243 (254)
T ss_pred EEEEeeCcccCccccc---c-c--CCHH--HHHHHHhcC--------CCCCCcCHHHHHHHHHHHcCchhc--CCCCCeE
Confidence 9999999885442110 0 0 0111 111111100 011245789999999888754321 1245666
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+..+
T Consensus 244 ~~dgg 248 (254)
T PRK07478 244 LVDGG 248 (254)
T ss_pred EeCCc
Confidence 66443
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-13 Score=137.83 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=119.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+++||||||+||+++++.|++.|.+ |+++.|+..... ....+++.. +.++. ...++.++.+|
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~l~~~~-----~~~~~-----~~~~~~~~~~D 70 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGAN---IVIAAKTAEPHPKLPGTIHTAA-----EEIEA-----AGGQALPLVGD 70 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEecccccccchhhHHHHHH-----HHHHh-----cCCceEEEEec
Confidence 46789999999999999999999999875 888888754321 111222211 11111 23468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++
T Consensus 71 ~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~i 144 (273)
T PRK08278 71 VRDED------QVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHI 144 (273)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEE
Confidence 99976 5555544 68999999997432 2445678899999999999998752 123478
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
+++||....... +.+ ....|+.||+..|.+++..+. +++.
T Consensus 145 v~iss~~~~~~~-------~~~-----------------------------~~~~Y~~sK~a~~~~~~~la~el~~~~I~ 188 (273)
T PRK08278 145 LTLSPPLNLDPK-------WFA-----------------------------PHTAYTMAKYGMSLCTLGLAEEFRDDGIA 188 (273)
T ss_pred EEECCchhcccc-------ccC-----------------------------CcchhHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 888875321100 000 015899999999999987765 5899
Q ss_pred EEEeecce
Q psy6053 318 CLMLRPSI 325 (614)
Q Consensus 318 ~~IvRp~~ 325 (614)
++.+.||.
T Consensus 189 v~~i~Pg~ 196 (273)
T PRK08278 189 VNALWPRT 196 (273)
T ss_pred EEEEeCCC
Confidence 99999983
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=137.25 Aligned_cols=228 Identities=14% Similarity=0.135 Sum_probs=142.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+++||||+|+||.++++.|++.|.+ |+++.|+... .+++.+.+ . . ...++.++.+|+++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~---v~~~~r~~~~---~~~~~~~~--------~----~-~~~~~~~~~~Dl~~ 62 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFK---VAIVDYNEET---AQAAADKL--------S----K-DGGKAIAVKADVSD 62 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHH--------H----h-cCCeEEEEECCCCC
Confidence 689999999999999999999999865 8888886422 12222111 0 0 22468889999999
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~V~ 243 (614)
++ .++.+++ ++|+|||+||.... .+.++..+++|+.|+..+++.+... +...++|+
T Consensus 63 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~ 136 (256)
T PRK08643 63 RD------QVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIIN 136 (256)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 76 5554443 58999999986421 2456778999999998877776542 12357999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... | ....|+.||+..|.+++..+. .|+.++
T Consensus 137 ~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 178 (256)
T PRK08643 137 ATSQAGVVGN----------P----------------------------ELAVYSSTKFAVRGLTQTAARDLASEGITVN 178 (256)
T ss_pred ECccccccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhcccCcEEE
Confidence 9987542111 0 015799999998887776654 589999
Q ss_pred EeecceeecccCCCCcc-ccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 320 MLRPSIIIPVWREPLPG-WTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~g-w~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
.++||.|.++....... ..++...+............ ...-+...+++|+++..++..... ...+.++.
T Consensus 179 ~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~va~~~~~L~~~~~~--~~~G~~i~ 248 (256)
T PRK08643 179 AYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDI--------TLGRLSEPEDVANCVSFLAGPDSD--YITGQTII 248 (256)
T ss_pred EEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccC--------CCCCCcCHHHHHHHHHHHhCcccc--CccCcEEE
Confidence 99999886653210000 00000000000000000000 011245789999998888754331 13566777
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 249 vdgg 252 (256)
T PRK08643 249 VDGG 252 (256)
T ss_pred eCCC
Confidence 6554
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=142.69 Aligned_cols=202 Identities=15% Similarity=0.213 Sum_probs=134.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||||+||+.++++|++.|++ |+++.|+.. +++++.+ .++. ...++.++.+|+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~---Vvl~~R~~~------~l~~~~~-----~l~~-----~g~~~~~v~~Dv 66 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAK---VVLLARGEE------GLEALAA-----EIRA-----AGGEALAVVADV 66 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCHH------HHHHHHH-----HHHH-----cCCcEEEEEecC
Confidence 56789999999999999999999999876 888888632 2222211 1111 234688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~ 241 (614)
++++ +++.+++ .+|++||+|+...+ .+.++..+++|+.|+.++.+.+ ++ .+..++
T Consensus 67 ~d~~------~v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~-~~~g~i 139 (334)
T PRK07109 67 ADAE------AVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRP-RDRGAI 139 (334)
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEE
Confidence 9876 5665543 58999999996432 2445667888888776655444 44 245789
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NG 315 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~g 315 (614)
|++||..+..... ....|+.||+..+.+.+.... .+
T Consensus 140 V~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~l~~el~~~~~~ 181 (334)
T PRK07109 140 IQVGSALAYRSIP--------------------------------------LQSAYCAAKHAIRGFTDSLRCELLHDGSP 181 (334)
T ss_pred EEeCChhhccCCC--------------------------------------cchHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999997643210 015799999988777665432 36
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+.+++++||.|..+. ..|..+ .. + ........+...+++|++++.++.++
T Consensus 182 I~v~~v~Pg~v~T~~----~~~~~~----------~~-~------~~~~~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 182 VSVTMVQPPAVNTPQ----FDWARS----------RL-P------VEPQPVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred eEEEEEeCCCccCch----hhhhhh----------hc-c------ccccCCCCCCCHHHHHHHHHHHHhCC
Confidence 899999999885431 111100 00 0 00111224568899999999988653
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.9e-13 Score=133.20 Aligned_cols=227 Identities=16% Similarity=0.206 Sum_probs=149.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||+.++++|++.|.+ +|+++.|.... ..+...++ +. ...++.++.+|+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~--~V~~~~r~~~~--~~~~~~~l---------~~-----~~~~~~~~~~D~ 65 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAA--GLVICGRNAEK--GEAQAAEL---------EA-----LGAKAVFVQADL 65 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCC--eEEEEcCCHHH--HHHHHHHH---------Hh-----cCCeEEEEEccC
Confidence 56899999999999999999999999865 47888886322 11111111 10 234688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---C-CCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM---K-HLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~-~~k~~ 241 (614)
++++ ++.++++ ++|+|||+||... -.+.++..+++|+.|+.++++.+... . ...++
T Consensus 66 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~i 139 (260)
T PRK06198 66 SDVE------DCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTI 139 (260)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEE
Confidence 9865 5555543 5799999999643 13445677899999999998887542 1 13579
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ..+.|+.+|...|.+++.... .+++
T Consensus 140 v~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~ 181 (260)
T PRK06198 140 VNIGSMSAHGGQP--------------------------------------FLAAYCASKGALATLTRNAAYALLRNRIR 181 (260)
T ss_pred EEECCcccccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986543211 016899999999999887654 4799
Q ss_pred EEEeecceeecccCCCCccccCCC-CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNI-NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~-~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++.++||.+.++....... .+ .....++..... ......+++++++++++..++..... ...+++
T Consensus 182 v~~i~pg~~~t~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~G~~ 247 (260)
T PRK06198 182 VNGLNIGWMATEGEDRIQR---EFHGAPDDWLEKAAA---------TQPFGRLLDPDEVARAVAFLLSDESG--LMTGSV 247 (260)
T ss_pred EEEEeeccccCcchhhhhh---hccCCChHHHHHHhc---------cCCccCCcCHHHHHHHHHHHcChhhC--CccCce
Confidence 9999999987764211000 00 011111211111 11122467899999999988754331 235778
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+.+.++
T Consensus 248 ~~~~~~ 253 (260)
T PRK06198 248 IDFDQS 253 (260)
T ss_pred EeECCc
Confidence 887765
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=137.41 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=142.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||+|+||..++++|++.|+. |+++.|.... .+++.+.+ .. ...++.++.+|+
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~---V~~~~r~~~~---~~~~~~~~--------~~-----~~~~~~~~~~Dv 67 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGAN---VAVASRSQEK---VDAAVAQL--------QQ-----AGPEGLGVSADV 67 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHH--------HH-----hCCceEEEECCC
Confidence 56899999999999999999999999876 8888886421 11111111 10 223568899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~ 243 (614)
++++ +++.+++ ++|+|||+|+... ..+.++..+++|+.|+.++++.+... +.-.++++
T Consensus 68 ~~~~------~i~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~ 141 (264)
T PRK07576 68 RDYA------AVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQ 141 (264)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9865 5655554 4799999997432 13456678899999999999887652 12258999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... | ....|+.||+..|.+++.... +|++++
T Consensus 142 iss~~~~~~~----------~----------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~ 183 (264)
T PRK07576 142 ISAPQAFVPM----------P----------------------------MQAHVCAAKAGVDMLTRTLALEWGPEGIRVN 183 (264)
T ss_pred ECChhhccCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 9997543211 0 015799999999999887654 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.+.++.. ...+.. ............ ......+..|+|++++.++..... ...+....+
T Consensus 184 ~v~pg~~~~t~~--~~~~~~-----~~~~~~~~~~~~--------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~~ 246 (264)
T PRK07576 184 SIVPGPIAGTEG--MARLAP-----SPELQAAVAQSV--------PLKRNGTKQDIANAALFLASDMAS--YITGVVLPV 246 (264)
T ss_pred EEecccccCcHH--Hhhccc-----CHHHHHHHHhcC--------CCCCCCCHHHHHHHHHHHcChhhc--CccCCEEEE
Confidence 999998754321 011110 011111111000 112346789999999988854321 124555555
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 247 ~gg 249 (264)
T PRK07576 247 DGG 249 (264)
T ss_pred CCC
Confidence 554
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-13 Score=135.22 Aligned_cols=219 Identities=12% Similarity=0.072 Sum_probs=137.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||||+||++++++|++.|++ |+++.|+... +++..+ + . +..++.+|+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~---v~~~~r~~~~------~~~~~~---------~----~--~~~~~~~D~ 60 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGAT---VVVGDIDPEA------GKAAAD---------E----V--GGLFVPTDV 60 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCE---EEEEeCCHHH------HHHHHH---------H----c--CCcEEEeeC
Confidence 67899999999999999999999999876 8888886421 111100 0 1 124678999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh---------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF---------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~ 240 (614)
++++ +++.+++ ++|+|||+|+.... .+.++..+++|+.|+..+++.+.. + .+..+
T Consensus 61 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~ 134 (255)
T PRK06057 61 TDED------AVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGS 134 (255)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcE
Confidence 9865 5665554 57999999986432 134677899999999887776542 1 24468
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH----HhhCCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE----AMNNGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~----~~~~gl 316 (614)
+|++||..+.... + .....|+.||+..+.+.+. ...+|+
T Consensus 135 iv~~sS~~~~~g~----------~---------------------------~~~~~Y~~sKaal~~~~~~l~~~~~~~gi 177 (255)
T PRK06057 135 IINTASFVAVMGS----------A---------------------------TSQISYTASKGGVLAMSRELGVQFARQGI 177 (255)
T ss_pred EEEEcchhhccCC----------C---------------------------CCCcchHHHHHHHHHHHHHHHHHHHhhCc
Confidence 9999986432110 0 0015799999766555554 433689
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
.++++|||.+.++...+. +. ..+........ ..+ ...+..++++++++..++..... ...+..
T Consensus 178 ~v~~i~pg~v~t~~~~~~--~~---~~~~~~~~~~~-----~~~-----~~~~~~~~~~a~~~~~l~~~~~~--~~~g~~ 240 (255)
T PRK06057 178 RVNALCPGPVNTPLLQEL--FA---KDPERAARRLV-----HVP-----MGRFAEPEEIAAAVAFLASDDAS--FITAST 240 (255)
T ss_pred EEEEEeeCCcCCchhhhh--cc---CCHHHHHHHHh-----cCC-----CCCCcCHHHHHHHHHHHhCcccc--CccCcE
Confidence 999999999876542211 00 01111111010 011 11468889999998876654321 124566
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+.+.++
T Consensus 241 ~~~~~g 246 (255)
T PRK06057 241 FLVDGG 246 (255)
T ss_pred EEECCC
Confidence 666544
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=139.08 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=122.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||||++|+++++.|++.|.+ |+++.|+.. +++++.. .++. ...++.++.+|+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~---Vi~~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~D~ 67 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAK---VVLASRRVE------RLKELRA-----EIEA-----EGGAAHVVSLDV 67 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHh-----cCCcEEEEEecC
Confidence 56899999999999999999999999864 888888642 2222211 1111 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-----
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH----- 237 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~----- 237 (614)
++++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... ..
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 141 (258)
T PRK06949 68 TDYQ------SIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGN 141 (258)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCC
Confidence 9865 5666554 58999999996321 2456678899999999998877531 11
Q ss_pred ---CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-
Q psy6053 238 ---LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN- 313 (614)
Q Consensus 238 ---~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~- 313 (614)
..++|++||..+.... .....|+.+|...|.+++..+.
T Consensus 142 ~~~~g~iv~~sS~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~~ 183 (258)
T PRK06949 142 TKPGGRIINIASVAGLRVL--------------------------------------PQIGLYCMSKAAVVHMTRAMALE 183 (258)
T ss_pred CCCCeEEEEECcccccCCC--------------------------------------CCccHHHHHHHHHHHHHHHHHHH
Confidence 2589999998653211 0126799999999998877654
Q ss_pred ---CCCCEEEeecceeeccc
Q psy6053 314 ---NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 314 ---~glp~~IvRp~~I~g~~ 330 (614)
.+++++++|||.|.++.
T Consensus 184 ~~~~~i~v~~v~pG~v~t~~ 203 (258)
T PRK06949 184 WGRHGINVNAICPGYIDTEI 203 (258)
T ss_pred HHhcCeEEEEEeeCCCcCCc
Confidence 58999999999998764
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-13 Score=133.05 Aligned_cols=223 Identities=14% Similarity=0.117 Sum_probs=144.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|++|++++++|++.|.+ |+++.|+.+. .+++.+.++ . ...++..+.+|+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~---v~~~~r~~~~---~~~~~~~~~--------~-----~~~~~~~~~~D~ 65 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAK---VVVADRDAAG---GEETVALIR--------E-----AGGEALFVACDV 65 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE---EEEEeCCHHH---HHHHHHHHH--------h-----cCCceEEEEcCC
Confidence 46799999999999999999999999865 8888886432 122221111 0 234688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~ 241 (614)
++++ ++..+++ .+|+|||+|+... + .+.++..+++|+.++..+++.+.. + .+..++
T Consensus 66 ~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~i 139 (253)
T PRK06172 66 TRDA------EVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAI 139 (253)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 5555544 4699999998632 1 245667889999999877665432 1 244689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
+++||..+..... ....|+.||+..|.+.+.... +|++
T Consensus 140 i~~sS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~~i~ 181 (253)
T PRK06172 140 VNTASVAGLGAAP--------------------------------------KMSIYAASKHAVIGLTKSAAIEYAKKGIR 181 (253)
T ss_pred EEECchhhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986533210 015799999999888877654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+..++..+ ........... .. + ..-+...+++++.++.++..... ...+.++
T Consensus 182 v~~i~PG~v~t~~~~~~~~------~~~~~~~~~~~-~~------~--~~~~~~p~~ia~~~~~l~~~~~~--~~~G~~i 244 (253)
T PRK06172 182 VNAVCPAVIDTDMFRRAYE------ADPRKAEFAAA-MH------P--VGRIGKVEEVASAVLYLCSDGAS--FTTGHAL 244 (253)
T ss_pred EEEEEeCCccChhhhhhcc------cChHHHHHHhc-cC------C--CCCccCHHHHHHHHHHHhCcccc--CcCCcEE
Confidence 9999999885543221110 01111111111 00 0 01245679999998888765432 1356777
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 245 ~~dgg 249 (253)
T PRK06172 245 MVDGG 249 (253)
T ss_pred EECCC
Confidence 77665
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-13 Score=138.11 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=141.4
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..+++|+++||||+|+||++++++|++.|.. |++..|.... ..++-.+++ +. ...++.++.+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~---Vv~~~~~~~~-~~~~~~~~i---------~~-----~g~~~~~~~~ 69 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGAT---VVVNDVASAL-DASDVLDEI---------RA-----AGAKAVAVAG 69 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEecCCchh-HHHHHHHHH---------Hh-----cCCeEEEEeC
Confidence 3467899999999999999999999999875 7777665321 111111111 11 2357889999
Q ss_pred CCCCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-----C---
Q psy6053 178 DAEADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-----K--- 236 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-----~--- 236 (614)
|+++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .
T Consensus 70 Dv~d~~------~~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~ 143 (306)
T PRK07792 70 DISQRA------TADELVATAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAG 143 (306)
T ss_pred CCCCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccC
Confidence 999865 5555543 58999999997542 3456778999999999999887531 0
Q ss_pred --CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-
Q psy6053 237 --HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN- 313 (614)
Q Consensus 237 --~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~- 313 (614)
.-.++|++||..+..... ....|+.||...+.+++..+.
T Consensus 144 ~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~e 185 (306)
T PRK07792 144 GPVYGRIVNTSSEAGLVGPV--------------------------------------GQANYGAAKAGITALTLSAARA 185 (306)
T ss_pred CCCCcEEEEECCcccccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHH
Confidence 014799999876432110 014799999999998876554
Q ss_pred ---CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcC
Q psy6053 314 ---NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQK 390 (614)
Q Consensus 314 ---~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~ 390 (614)
+|+++..+.|+. .+ ++.. . .+ ..... ......+.++.+++++++..++.....
T Consensus 186 ~~~~gI~vn~i~Pg~--~t---~~~~---~------~~----~~~~~----~~~~~~~~~~pe~va~~v~~L~s~~~~-- 241 (306)
T PRK07792 186 LGRYGVRANAICPRA--RT---AMTA---D------VF----GDAPD----VEAGGIDPLSPEHVVPLVQFLASPAAA-- 241 (306)
T ss_pred hhhcCeEEEEECCCC--CC---chhh---h------hc----cccch----hhhhccCCCCHHHHHHHHHHHcCcccc--
Confidence 589999999973 11 1000 0 00 00000 000112345789999998877654321
Q ss_pred CCCccEEEeccC
Q psy6053 391 EHRQSIVHLTSS 402 (614)
Q Consensus 391 ~~~~~vyni~~~ 402 (614)
...+.+|.+.++
T Consensus 242 ~~tG~~~~v~gg 253 (306)
T PRK07792 242 EVNGQVFIVYGP 253 (306)
T ss_pred CCCCCEEEEcCC
Confidence 136778888665
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=135.68 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=116.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+++||||+|+||.++++.|++.|.+ |+++.|+.. +++++.+ .++ . ...++.++.+|++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~---v~~~~r~~~------~~~~~~~-----~l~----~-~~~~~~~~~~Dl~~~ 61 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFA---VAVADLNEE------TAKETAK-----EIN----Q-AGGKAVAYKLDVSDK 61 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHH----h-cCCeEEEEEcCCCCH
Confidence 57999999999999999999999865 888888632 2221111 011 0 234688999999987
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH----cCCCceEEEE
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE----MKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~~~k~~V~v 244 (614)
+ .+.++++ .+|+|||+|+.... .+.++..+++|+.|+..+++.+.. .+...++|++
T Consensus 62 ~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~ 135 (254)
T TIGR02415 62 D------QVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINA 135 (254)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 6 5555543 57999999986432 245667899999999887776643 1223689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... | ..+.|+.+|+..|.+++.... .++.+.+
T Consensus 136 sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 177 (254)
T TIGR02415 136 ASIAGHEGN----------P----------------------------ILSAYSSTKFAVRGLTQTAAQELAPKGITVNA 177 (254)
T ss_pred cchhhcCCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 997543211 0 016899999999999876554 4799999
Q ss_pred eecceeecc
Q psy6053 321 LRPSIIIPV 329 (614)
Q Consensus 321 vRp~~I~g~ 329 (614)
++||.+..+
T Consensus 178 v~Pg~i~t~ 186 (254)
T TIGR02415 178 YCPGIVKTP 186 (254)
T ss_pred EecCcccCh
Confidence 999988544
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=138.62 Aligned_cols=158 Identities=18% Similarity=0.240 Sum_probs=115.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+++||||||++|+++++.|++.|++ |+++.|+.. +++++. ..++.++.+|++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~----------------~~~~~~~~~Dl~~~ 56 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYE---VWATARKAE------DVEALA----------------AAGFTAVQLDVNDG 56 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHH----------------HCCCeEEEeeCCCH
Confidence 68999999999999999999999875 888888642 222221 12467889999986
Q ss_pred CCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~vST 246 (614)
+ +++.++ .++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||
T Consensus 57 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS 130 (274)
T PRK05693 57 A------ALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGS 130 (274)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 5 555554 368999999996432 2556778999999999998887431 13367899999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+.... | ....|+.||...|.+.+.... .|+++++++
T Consensus 131 ~~~~~~~----------~----------------------------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~ 172 (274)
T PRK05693 131 VSGVLVT----------P----------------------------FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQ 172 (274)
T ss_pred ccccCCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEe
Confidence 7653211 0 125799999988887765543 589999999
Q ss_pred cceeecc
Q psy6053 323 PSIIIPV 329 (614)
Q Consensus 323 p~~I~g~ 329 (614)
||.|..+
T Consensus 173 pg~v~t~ 179 (274)
T PRK05693 173 PGAIASQ 179 (274)
T ss_pred cCccccc
Confidence 9998654
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-13 Score=135.59 Aligned_cols=228 Identities=12% Similarity=0.079 Sum_probs=145.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||.+++++|++.|.+ |+++.|.+.. .+.+.+. +.... ...++.++.+|+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~---vv~~~r~~~~---~~~~~~~--------~~~~~---~~~~~~~~~~Dl 67 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAA---VALADLDAAL---AERAAAA--------IARDV---AGARVLAVPADV 67 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHH--------HHhcc---CCceEEEEEccC
Confidence 56899999999999999999999999875 8888886421 1111111 11100 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ ++..+++ .+|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|
T Consensus 68 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 141 (260)
T PRK07063 68 TDAA------SVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIV 141 (260)
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEE
Confidence 9876 5655554 68999999996432 3456778999999999888876531 2446899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. .|+++
T Consensus 142 ~isS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~el~~~gIrv 183 (260)
T PRK07063 142 NIASTHAFKIIP--------------------------------------GCFPYPVAKHGLLGLTRALGIEYAARNVRV 183 (260)
T ss_pred EECChhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhCccCeEE
Confidence 999986532110 014799999999988877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|-.+..... |. ....+......... .. + .--+...+|+|++++.++..... -..+.+..
T Consensus 184 n~v~PG~v~t~~~~~~--~~-~~~~~~~~~~~~~~-~~---~-----~~r~~~~~~va~~~~fl~s~~~~--~itG~~i~ 249 (260)
T PRK07063 184 NAIAPGYIETQLTEDW--WN-AQPDPAAARAETLA-LQ---P-----MKRIGRPEEVAMTAVFLASDEAP--FINATCIT 249 (260)
T ss_pred EEEeeCCccChhhhhh--hh-ccCChHHHHHHHHh-cC---C-----CCCCCCHHHHHHHHHHHcCcccc--ccCCcEEE
Confidence 9999998854422110 00 00011111111111 00 0 01144679999999888754321 12456666
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 250 vdgg 253 (260)
T PRK07063 250 IDGG 253 (260)
T ss_pred ECCC
Confidence 6554
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=137.18 Aligned_cols=158 Identities=17% Similarity=0.168 Sum_probs=115.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||+||++++++|++.|.+ |.++.|+.... +.+ . ...++.++.+|++++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~---v~~~~r~~~~~-----~~~---------------~-~~~~~~~~~~D~~~~ 57 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIA---VLGVARSRHPS-----LAA---------------A-AGERLAEVELDLSDA 57 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCE---EEEEecCcchh-----hhh---------------c-cCCeEEEEEeccCCH
Confidence 68999999999999999999999876 88888875321 100 0 224688999999987
Q ss_pred CCCCCHHHHHHHhc-----------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 183 ELAIKESDRQLLAS-----------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-----------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
+ +++.++. .+|++||+|+.... .+.++..+++|+.|+..+.+.+.+. .+.++
T Consensus 58 ~------~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ 131 (243)
T PRK07023 58 A------AAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERR 131 (243)
T ss_pred H------HHHHHHHHHHHHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCE
Confidence 6 4544221 47899999997542 2456778899999977766655431 24568
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMP 317 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp 317 (614)
+|++||..+..... ....|+.+|...|.+++.+.. .+++
T Consensus 132 iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~i~ 173 (243)
T PRK07023 132 ILHISSGAARNAYA--------------------------------------GWSVYCATKAALDHHARAVALDANRALR 173 (243)
T ss_pred EEEEeChhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 99999985432110 015799999999999987764 5899
Q ss_pred EEEeecceeec
Q psy6053 318 CLMLRPSIIIP 328 (614)
Q Consensus 318 ~~IvRp~~I~g 328 (614)
+.+++||.+-.
T Consensus 174 v~~v~pg~~~t 184 (243)
T PRK07023 174 IVSLAPGVVDT 184 (243)
T ss_pred EEEecCCcccc
Confidence 99999998744
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.3e-13 Score=134.58 Aligned_cols=199 Identities=18% Similarity=0.245 Sum_probs=134.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++++|+||||+|+||..++++|+++|++ |+++.|+.. +++++.. .+ . ...++.++.+|++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~-----~-~~~~~~~~~~D~~ 63 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGAR---LLLVGRNAE------KLEALAA-----RL-----P-YPGRHRWVVADLT 63 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEECCHH------HHHHHHH-----HH-----h-cCCceEEEEccCC
Confidence 5789999999999999999999999876 888888632 2222211 11 0 2347889999999
Q ss_pred CCCCCCCHHHHHHHh------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 181 ADELAIKESDRQLLA------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
+++ +++.+. ..+|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 64 d~~------~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~i 137 (263)
T PRK09072 64 SEA------GREAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNV 137 (263)
T ss_pred CHH------HHHHHHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 876 555443 357999999997543 2456678899999999999887642 234678999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... | ....|+.||...+.+++.... .++.++.
T Consensus 138 sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 179 (263)
T PRK09072 138 GSTFGSIGY----------P----------------------------GYASYCASKFALRGFSEALRRELADTGVRVLY 179 (263)
T ss_pred cChhhCcCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 887542211 0 014699999987777665553 5788999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+.||.+-++...+. .... ..........++++|++++.++.+.
T Consensus 180 v~Pg~~~t~~~~~~------------------~~~~-----~~~~~~~~~~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 180 LAPRATRTAMNSEA------------------VQAL-----NRALGNAMDDPEDVAAAVLQAIEKE 222 (263)
T ss_pred EecCcccccchhhh------------------cccc-----cccccCCCCCHHHHHHHHHHHHhCC
Confidence 99987744321100 0000 0001113568899999999988653
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=131.05 Aligned_cols=221 Identities=14% Similarity=0.094 Sum_probs=141.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
||+++||||+|+||+++++.|++.|.. |+++.|+... .+.+.+. ++. ...++.++.+|+++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~---Vi~~~r~~~~---~~~~~~~--------~~~-----~~~~~~~~~~D~~~ 61 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGAN---VVITGRTKEK---LEEAKLE--------IEQ-----FPGQVLTVQMDVRN 61 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHH--------HHh-----cCCcEEEEEecCCC
Confidence 589999999999999999999999875 8888886421 1122111 110 22468899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~V~ 243 (614)
++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|+
T Consensus 62 ~~------~~~~~~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~ 135 (252)
T PRK07677 62 PE------DVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIIN 135 (252)
T ss_pred HH------HHHHHHHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 65 5555443 57999999984221 2446778999999999999988531 12 358999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-----CCCCE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-----NGMPC 318 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-----~glp~ 318 (614)
+||.++.... .....|+.||+..+.+.+..+. +|+++
T Consensus 136 isS~~~~~~~--------------------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v 177 (252)
T PRK07677 136 MVATYAWDAG--------------------------------------PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRV 177 (252)
T ss_pred EcChhhccCC--------------------------------------CCCcchHHHHHHHHHHHHHHHHHhCcccCeEE
Confidence 9998653211 0125799999998888876432 48999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++... . ...........+.+.. + ..-+...+|+++++..++..... ...+.++.
T Consensus 178 ~~v~PG~v~~~~~~---~---~~~~~~~~~~~~~~~~-------~--~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~~ 240 (252)
T PRK07677 178 NAIAPGPIERTGGA---D---KLWESEEAAKRTIQSV-------P--LGRLGTPEEIAGLAYFLLSDEAA--YINGTCIT 240 (252)
T ss_pred EEEeeccccccccc---c---cccCCHHHHHHHhccC-------C--CCCCCCHHHHHHHHHHHcCcccc--ccCCCEEE
Confidence 99999988643210 0 0000111222222111 0 11256778999988777654221 12556666
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 241 ~~gg 244 (252)
T PRK07677 241 MDGG 244 (252)
T ss_pred ECCC
Confidence 6554
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=136.36 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=118.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||+++++.|++.|.+ |.++.|..... ...++..+.+|+
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~---v~~~~~~~~~~-------------------------~~~~~~~~~~D~ 58 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGAN---VVNADIHGGDG-------------------------QHENYQFVPTDV 58 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCcccc-------------------------ccCceEEEEccC
Confidence 46899999999999999999999999876 77777765321 123578899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----------------hhHHHHHHHHHhHHHHHHHHHHHHHc-
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----------------FDEALKKAVLLNTRGTKMMLSLAKEM- 235 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----------------~~~~~~~~~~~Nv~gt~~ll~la~~~- 235 (614)
++++ +++.+++ .+|+|||+||... -.+.++..+++|+.|+..+++++...
T Consensus 59 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 132 (266)
T PRK06171 59 SSAE------EVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQM 132 (266)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 9876 5655544 5799999999532 12456678999999999999888752
Q ss_pred --CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh
Q psy6053 236 --KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN 313 (614)
Q Consensus 236 --~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~ 313 (614)
.+-.++|++||..+..... ....|+.||+..+.+++..+.
T Consensus 133 ~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~l~~~la~ 174 (266)
T PRK06171 133 VKQHDGVIVNMSSEAGLEGSE--------------------------------------GQSCYAATKAALNSFTRSWAK 174 (266)
T ss_pred HhcCCcEEEEEccccccCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHH
Confidence 1335799999986532210 015799999999998877654
Q ss_pred ----CCCCEEEeecceee
Q psy6053 314 ----NGMPCLMLRPSIII 327 (614)
Q Consensus 314 ----~glp~~IvRp~~I~ 327 (614)
+|+++.+++||.+-
T Consensus 175 e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 175 ELGKHNIRVVGVAPGILE 192 (266)
T ss_pred HhhhcCeEEEEEeccccc
Confidence 58999999999884
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-13 Score=135.80 Aligned_cols=227 Identities=18% Similarity=0.162 Sum_probs=144.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|++|++++++|++.|++ |+++.|.... .++..+++ . + ...++.++.+|+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~---V~~~~r~~~~--~~~~~~~~---------~----~-~~~~~~~~~~Dl 68 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAK---VAILDRNQEK--AEAVVAEI---------K----A-AGGEALAVKADV 68 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHHH--HHHHHHHH---------H----h-cCCeEEEEECCC
Confidence 46899999999999999999999999875 8888886321 11111111 1 0 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh----------------------hHHHHHHHHHhHHHHHHHHH
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF----------------------DEALKKAVLLNTRGTKMMLS 230 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~----------------------~~~~~~~~~~Nv~gt~~ll~ 230 (614)
++++ ++..+++ .+|++||+|+.... .+.++..+++|+.++..+++
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 142 (278)
T PRK08277 69 LDKE------SLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQ 142 (278)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHH
Confidence 9865 5554443 68999999995321 24567789999999987665
Q ss_pred HHHH-c--CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHH
Q psy6053 231 LAKE-M--KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGL 307 (614)
Q Consensus 231 la~~-~--~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~l 307 (614)
.+.. + .+..++|++||..+..... ....|+.||+..+.+
T Consensus 143 ~~~~~~~~~~~g~ii~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~l 184 (278)
T PRK08277 143 VFAKDMVGRKGGNIINISSMNAFTPLT--------------------------------------KVPAYSAAKAAISNF 184 (278)
T ss_pred HHHHHHHhcCCcEEEEEccchhcCCCC--------------------------------------CCchhHHHHHHHHHH
Confidence 5432 1 2346899999986643210 015799999999988
Q ss_pred HHHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHH
Q psy6053 308 VVEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAI 383 (614)
Q Consensus 308 v~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~ 383 (614)
++..+. .|+++..++||.|..+..+......+. ............ ....-+...+|+|++++.++
T Consensus 185 ~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~--~~~~~~~~~~~~---------~p~~r~~~~~dva~~~~~l~ 253 (278)
T PRK08277 185 TQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDG--SLTERANKILAH---------TPMGRFGKPEELLGTLLWLA 253 (278)
T ss_pred HHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccc--cchhHHHHHhcc---------CCccCCCCHHHHHHHHHHHc
Confidence 877655 589999999999977643211100000 000111111111 01122556799999998877
Q ss_pred Hh-hhhcCCCCccEEEeccC
Q psy6053 384 WA-YLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 384 ~~-~~~~~~~~~~vyni~~~ 402 (614)
.. ... -..+.+..+.++
T Consensus 254 s~~~~~--~~tG~~i~vdgG 271 (278)
T PRK08277 254 DEKASS--FVTGVVLPVDGG 271 (278)
T ss_pred CccccC--CcCCCEEEECCC
Confidence 65 221 124566666544
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=132.15 Aligned_cols=208 Identities=15% Similarity=0.219 Sum_probs=133.1
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|+||||+|+||+++++.|++.|.+ |+++.|++.. ..+.+.+.+ .... ....+..+.+|+++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~---v~~~~r~~~~--~~~~~~~~~--------~~~~---~~~~~~~~~~D~~~~~ 64 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAK---VFLTDINDAA--GLDAFAAEI--------NAAH---GEGVAFAAVQDVTDEA 64 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCcch--HHHHHHHHH--------HhcC---CCceEEEEEeecCCHH
Confidence 3899999999999999999999875 8888886321 122222111 1100 1123556889999865
Q ss_pred CCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHH----HHHHHHHHHHHcCCCceEEEEe
Q psy6053 184 LAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTR----GTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 184 lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~----gt~~ll~la~~~~~~k~~V~vS 245 (614)
.++.+++ .+|+|||+|+.... .+.+...+++|+. +++.++..+++ .+.+++|++|
T Consensus 65 ------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~ii~~s 137 (251)
T PRK07069 65 ------QWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRA-SQPASIVNIS 137 (251)
T ss_pred ------HHHHHHHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cCCcEEEEec
Confidence 5555543 57999999997542 2345667888988 77888888877 3678999999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C--CCCEE
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N--GMPCL 319 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~--glp~~ 319 (614)
|..+..... ....|+.||...+.+++..+. + +++++
T Consensus 138 s~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~ 179 (251)
T PRK07069 138 SVAAFKAEP--------------------------------------DYTAYNASKAAVASLTKSIALDCARRGLDVRCN 179 (251)
T ss_pred ChhhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhcccCCcEEEE
Confidence 986543210 014799999999888876543 2 48889
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
.++||.+.++...+.... ......+..+.++. ....+..++|+|++++.++..
T Consensus 180 ~v~pg~v~t~~~~~~~~~----~~~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~ 232 (251)
T PRK07069 180 SIHPTFIRTGIVDPIFQR----LGEEEATRKLARGV---------PLGRLGEPDDVAHAVLYLASD 232 (251)
T ss_pred EEeecccCCcchhHHhhh----ccchhHHHHHhccC---------CCCCCcCHHHHHHHHHHHcCc
Confidence 999998876643221100 01111111222211 112345789999998887644
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-13 Score=132.13 Aligned_cols=216 Identities=14% Similarity=0.135 Sum_probs=138.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||+.++++|++.|.+ |+++.|... ++++++.. . .++.++.+|+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~---v~~~~~~~~-----~~~~~l~~--------------~-~~~~~~~~D~ 60 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGAN---VRFTYAGSK-----DAAERLAQ--------------E-TGATAVQTDS 60 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEecCCCH-----HHHHHHHH--------------H-hCCeEEecCC
Confidence 46799999999999999999999999876 666665432 22222211 0 1245778999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-cCCCceEEEEeCce
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-MKHLELFVHISTAY 248 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~V~vST~~ 248 (614)
++++ .+.++++ ++|++||+||.... .+.++..+++|+.|+..++..+.. +....++|++||..
T Consensus 61 ~~~~------~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~ 134 (237)
T PRK12742 61 ADRD------AVIDVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN 134 (237)
T ss_pred CCHH------HHHHHHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 8854 4544443 48999999986432 245677899999999998755544 33346899999976
Q ss_pred eccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecc
Q psy6053 249 CHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPS 324 (614)
Q Consensus 249 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~ 324 (614)
+... + .| ....|+.||+..|.+++..+. .|+.+.+++||
T Consensus 135 ~~~~--~-------~~----------------------------~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg 177 (237)
T PRK12742 135 GDRM--P-------VA----------------------------GMAAYAASKSALQGMARGLARDFGPRGITINVVQPG 177 (237)
T ss_pred cccC--C-------CC----------------------------CCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecC
Confidence 4210 0 00 016899999999999877544 58999999999
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.+..+... . ..+. . ....... + ..-+...+|+++++..++..... ...+.++.+.++
T Consensus 178 ~~~t~~~~-------~-~~~~--~-~~~~~~~---~-----~~~~~~p~~~a~~~~~l~s~~~~--~~~G~~~~~dgg 234 (237)
T PRK12742 178 PIDTDANP-------A-NGPM--K-DMMHSFM---A-----IKRHGRPEEVAGMVAWLAGPEAS--FVTGAMHTIDGA 234 (237)
T ss_pred cccCCccc-------c-ccHH--H-HHHHhcC---C-----CCCCCCHHHHHHHHHHHcCcccC--cccCCEEEeCCC
Confidence 88554311 0 1111 1 1111110 0 01235678999998887754321 124556655443
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.8e-13 Score=131.67 Aligned_cols=215 Identities=15% Similarity=0.125 Sum_probs=140.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++||||||||++|.++++.|++.|.+ |+++.|+... .+++.+.. . ...++.++.+|+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~---V~~~~r~~~~---~~~~~~~~--------~------~~~~~~~~~~Dl 62 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQ---VCINSRNENK---LKRMKKTL--------S------KYGNIHYVVGDV 62 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHH--------H------hcCCeEEEECCC
Confidence 35789999999999999999999999875 8899986421 12221111 0 113678899999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-----hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-----DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST 246 (614)
++++ +.+.++ .++|.++|+++.... .+.+...+++|+.++..+++.+..+ ..-.++|++||
T Consensus 63 ~~~~------~~~~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 63 SSTE------SARNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9876 454443 346999999985321 2345567899999988888877663 12257999998
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+... .. + ....|+.||+..+.+++.... .|++++++|
T Consensus 137 ~~~~~~--~~-------~----------------------------~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~ 179 (238)
T PRK05786 137 MSGIYK--AS-------P----------------------------DQLSYAVAKAGLAKAVEILASELLGRGIRVNGIA 179 (238)
T ss_pred chhccc--CC-------C----------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEe
Confidence 754110 00 0 014699999988877766554 489999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
|+.++++.. + .... ... . ......++.++++++++.++..... ...+..+.+.++
T Consensus 180 pg~v~~~~~-~-----------~~~~----~~~-~------~~~~~~~~~~~va~~~~~~~~~~~~--~~~g~~~~~~~~ 234 (238)
T PRK05786 180 PTTISGDFE-P-----------ERNW----KKL-R------KLGDDMAPPEDFAKVIIWLLTDEAD--WVDGVVIPVDGG 234 (238)
T ss_pred cCccCCCCC-c-----------hhhh----hhh-c------cccCCCCCHHHHHHHHHHHhccccc--CccCCEEEECCc
Confidence 999987532 1 0000 000 0 0112357889999999998865332 124556655433
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=137.66 Aligned_cols=203 Identities=16% Similarity=0.173 Sum_probs=135.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||||+||++++++|++.|.+ |+++.|+. ++++++.+ .++. ...++.++.+|+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~---Vvl~~R~~------~~l~~~~~-----~~~~-----~g~~~~~~~~Dv 65 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGAR---LVLAARDE------EALQAVAE-----ECRA-----LGAEVLVVPTDV 65 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHh-----cCCcEEEEEeeC
Confidence 45789999999999999999999999876 78888864 23332211 1111 224678889999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.++ ..+|++||+||...+ .+.++..+++|+.|+.++.+.+... .+...+|
T Consensus 66 ~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV 139 (330)
T PRK06139 66 TDAD------QVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFI 139 (330)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9876 666665 358999999986432 2456678999999999887776421 2346899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHH----HHHHHHHHhh-CCCC
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCL----SEGLVVEAMN-NGMP 317 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~----aE~lv~~~~~-~glp 317 (614)
++||..+.... | ....|+.||+. +|.+..+... .|+.
T Consensus 140 ~isS~~~~~~~----------p----------------------------~~~~Y~asKaal~~~~~sL~~El~~~~gI~ 181 (330)
T PRK06139 140 NMISLGGFAAQ----------P----------------------------YAAAYSASKFGLRGFSEALRGELADHPDIH 181 (330)
T ss_pred EEcChhhcCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 99997643211 1 12579999996 4555445443 3799
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
++.+.||.|..+..+ +..+. .+. .......+...+++|++++.++.++
T Consensus 182 V~~v~Pg~v~T~~~~----~~~~~-----------~~~------~~~~~~~~~~pe~vA~~il~~~~~~ 229 (330)
T PRK06139 182 VCDVYPAFMDTPGFR----HGANY-----------TGR------RLTPPPPVYDPRRVAKAVVRLADRP 229 (330)
T ss_pred EEEEecCCccCcccc----ccccc-----------ccc------cccCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999988655321 11010 000 0011123568899999999988654
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=135.13 Aligned_cols=220 Identities=13% Similarity=0.090 Sum_probs=142.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||.||+.++++|++.|.+ |+++.|... +...+..+ . ...++.++.+|+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~---vv~~~~~~~-----~~~~~~~~------------~-~~~~~~~~~~Dl 64 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGAD---IVGVGVAEA-----PETQAQVE------------A-LGRKFHFITADL 64 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEecCchH-----HHHHHHHH------------H-cCCeEEEEEeCC
Confidence 46899999999999999999999999976 777776431 11111111 0 235688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+... ++ -.++
T Consensus 65 ~~~~------~~~~~~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~i 138 (251)
T PRK12481 65 IQQK------DIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKI 138 (251)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEE
Confidence 9976 6666654 57999999996432 3567778999999998888876541 12 3589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+++..+. +|++
T Consensus 139 i~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gir 180 (251)
T PRK12481 139 INIASMLSFQGGI--------------------------------------RVPSYTASKSAVMGLTRALATELSQYNIN 180 (251)
T ss_pred EEeCChhhcCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhcCeE
Confidence 9999986543210 014799999999888876554 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|-.+.... + ............. ++ . -.+...+|+|+++..++..... ...+.+.
T Consensus 181 vn~v~PG~v~t~~~~~---~----~~~~~~~~~~~~~----~p---~--~~~~~peeva~~~~~L~s~~~~--~~~G~~i 242 (251)
T PRK12481 181 VNAIAPGYMATDNTAA---L----RADTARNEAILER----IP---A--SRWGTPDDLAGPAIFLSSSASD--YVTGYTL 242 (251)
T ss_pred EEEEecCCCccCchhh---c----ccChHHHHHHHhc----CC---C--CCCcCHHHHHHHHHHHhCcccc--CcCCceE
Confidence 9999999885432110 0 0000111111111 11 1 1245679999999888754321 1245555
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 243 ~vdgg 247 (251)
T PRK12481 243 AVDGG 247 (251)
T ss_pred EECCC
Confidence 55443
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-12 Score=122.27 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=143.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|.|+|||||+.+|..+++.|.+.|+. |++..|. .+||+++.+. .+ ..++.++..|+
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~---vvl~aRR------~drL~~la~~---------~~---~~~~~~~~~DV 62 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAK---VVLAARR------EERLEALADE---------IG---AGAALALALDV 62 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCe---EEEEecc------HHHHHHHHHh---------hc---cCceEEEeecc
Confidence 45689999999999999999999999976 8899997 4777766432 11 14688999999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
+|+. +.+.++ .++|++||+||.... .+.|+.++++|+.|..+..++..-. .+-..+|
T Consensus 63 tD~~------~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~Ii 136 (246)
T COG4221 63 TDRA------AVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHII 136 (246)
T ss_pred CCHH------HHHHHHHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEE
Confidence 9976 433333 369999999997542 3568889999999998887765431 2344899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
.+||..+.-. || ..+.|+.||+...++....+. .++++
T Consensus 137 N~~SiAG~~~--------y~------------------------------~~~vY~ATK~aV~~fs~~LR~e~~g~~IRV 178 (246)
T COG4221 137 NLGSIAGRYP--------YP------------------------------GGAVYGATKAAVRAFSLGLRQELAGTGIRV 178 (246)
T ss_pred Eecccccccc--------CC------------------------------CCccchhhHHHHHHHHHHHHHHhcCCCeeE
Confidence 9999975221 11 127899999987776655544 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+.+-||.|-.+.-+ -|.+ .|-..-..... .....+.-+|+|+++..++..+.
T Consensus 179 t~I~PG~v~~~~~s---~v~~--~g~~~~~~~~y------------~~~~~l~p~dIA~~V~~~~~~P~ 230 (246)
T COG4221 179 TVISPGLVETTEFS---TVRF--EGDDERADKVY------------KGGTALTPEDIAEAVLFAATQPQ 230 (246)
T ss_pred EEecCceecceecc---cccC--CchhhhHHHHh------------ccCCCCCHHHHHHHHHHHHhCCC
Confidence 99999998554221 1111 01000111111 22346778999999999998765
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-12 Score=133.49 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=121.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||.+++++|++.|.+ |++..|+... .++.++++ ....+. .++.++.+|+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~---Vil~~R~~~~--~~~~~~~l---------~~~~~~---~~v~~~~~Dl 74 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAE---VILPVRNRAK--GEAAVAAI---------RTAVPD---AKLSLRALDL 74 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCHHH--HHHHHHHH---------HHhCCC---CceEEEEecC
Confidence 56899999999999999999999999865 8888886421 12222222 111222 4688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~v 244 (614)
++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|...+.+.+... .+..++|++
T Consensus 75 ~d~~------sv~~~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~v 148 (313)
T PRK05854 75 SSLA------SVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQ 148 (313)
T ss_pred CCHH------HHHHHHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 9866 5555543 48999999997532 1456778999999988777766531 123589999
Q ss_pred eCceeccCCc---ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CC
Q psy6053 245 STAYCHLQEK---VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NG 315 (614)
Q Consensus 245 ST~~~~~~~~---~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~g 315 (614)
||........ .+.+. .+. ..-..|+.||...+.+..+... .|
T Consensus 149 sS~~~~~~~~~~~~~~~~---~~~--------------------------~~~~~Y~~SK~a~~~~~~~la~~~~~~~~g 199 (313)
T PRK05854 149 SSIAARRGAINWDDLNWE---RSY--------------------------AGMRAYSQSKIAVGLFALELDRRSRAAGWG 199 (313)
T ss_pred echhhcCCCcCccccccc---ccC--------------------------cchhhhHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9985432211 11110 000 0115799999999988877643 37
Q ss_pred CCEEEeecceeecc
Q psy6053 316 MPCLMLRPSIIIPV 329 (614)
Q Consensus 316 lp~~IvRp~~I~g~ 329 (614)
+.+..+.||.|-.+
T Consensus 200 I~v~~v~PG~v~T~ 213 (313)
T PRK05854 200 ITSNLAHPGVAPTN 213 (313)
T ss_pred eEEEEEecceeccC
Confidence 99999999998654
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-13 Score=133.55 Aligned_cols=220 Identities=14% Similarity=0.111 Sum_probs=142.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|.||++++++|++.|.+ |+++.|... .+..+++ .. ...++..+.+|+
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~---vv~~~~~~~----~~~~~~~---------~~-----~~~~~~~~~~Dl 66 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCD---IVGINIVEP----TETIEQV---------TA-----LGRRFLSLTADL 66 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEecCcch----HHHHHHH---------Hh-----cCCeEEEEECCC
Confidence 56899999999999999999999999876 666655432 1111211 10 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~ 241 (614)
++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+ -.++
T Consensus 67 ~~~~------~~~~~~~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~i 140 (253)
T PRK08993 67 RKID------GIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKI 140 (253)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9865 5655554 58999999997532 2567788999999999998887542 11 2579
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... .-..|+.||+..|.+.+..+. .|++
T Consensus 141 v~isS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~ 182 (253)
T PRK08993 141 INIASMLSFQGGI--------------------------------------RVPSYTASKSGVMGVTRLMANEWAKHNIN 182 (253)
T ss_pred EEECchhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhhhhCeE
Confidence 9999986543210 014799999998888876654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.+-.+..... .........+.. .. + . .-+...+++|++++.++..... ...+.++
T Consensus 183 v~~v~pG~v~T~~~~~~-------~~~~~~~~~~~~-~~---p---~--~r~~~p~eva~~~~~l~s~~~~--~~~G~~~ 244 (253)
T PRK08993 183 VNAIAPGYMATNNTQQL-------RADEQRSAEILD-RI---P---A--GRWGLPSDLMGPVVFLASSASD--YINGYTI 244 (253)
T ss_pred EEEEeeCcccCcchhhh-------ccchHHHHHHHh-cC---C---C--CCCcCHHHHHHHHHHHhCcccc--CccCcEE
Confidence 99999999855422110 000011111111 10 1 0 1255679999999888864332 1245555
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.++
T Consensus 245 ~~dgg 249 (253)
T PRK08993 245 AVDGG 249 (253)
T ss_pred EECCC
Confidence 55433
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.3e-13 Score=134.14 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=144.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||++++++|++.|++ |+++.|+... ++++.+ + ...++.++.+|+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~------~~~~~~---------~----~~~~~~~~~~Dl 61 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGAR---VAIVDIDADN------GAAVAA---------S----LGERARFIATDI 61 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHH------HHHHHH---------H----hCCeeEEEEecC
Confidence 46799999999999999999999999876 8888886421 222111 0 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC------hhHHHHHHHHHhHHHHHHHHHHHHH-c-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR------FDEALKKAVLLNTRGTKMMLSLAKE-M-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~------~~~~~~~~~~~Nv~gt~~ll~la~~-~-~~~k~~V~v 244 (614)
++++ +++.+++ .+|++||+|+... ..+.++..+++|+.|+..+++.+.. + ++-.++|++
T Consensus 62 ~~~~------~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~i 135 (261)
T PRK08265 62 TDDA------AIERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNF 135 (261)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 9865 5655554 5799999998632 2356677899999999999887764 2 233589999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... | ....|+.+|+..+.+++.... .|++++.
T Consensus 136 sS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~ 177 (261)
T PRK08265 136 TSISAKFAQ----------T----------------------------GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNS 177 (261)
T ss_pred CchhhccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhcccCEEEEE
Confidence 998543211 0 014799999999888877654 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.+..+......+ + .. .......... .+ ..-+...+|+|+++..++..... ...+.++.+.
T Consensus 178 v~PG~~~t~~~~~~~~---~--~~-~~~~~~~~~~------~p--~~r~~~p~dva~~~~~l~s~~~~--~~tG~~i~vd 241 (261)
T PRK08265 178 VSPGWTWSRVMDELSG---G--DR-AKADRVAAPF------HL--LGRVGDPEEVAQVVAFLCSDAAS--FVTGADYAVD 241 (261)
T ss_pred EccCCccChhhhhhcc---c--ch-hHHHHhhccc------CC--CCCccCHHHHHHHHHHHcCcccc--CccCcEEEEC
Confidence 9999875432111000 0 00 0000111000 01 11245679999999988754321 1256677766
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 242 gg 243 (261)
T PRK08265 242 GG 243 (261)
T ss_pred CC
Confidence 55
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=132.12 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=115.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||++|+.++++|++.|++ |+++.|+.... +.++ ...++.++.+|++++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~---V~~~~r~~~~~---~~~~------------------~~~~~~~~~~D~~d~ 57 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQ---VTATVRGPQQD---TALQ------------------ALPGVHIEKLDMNDP 57 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCE---EEEEeCCCcch---HHHH------------------hccccceEEcCCCCH
Confidence 68999999999999999999999875 89999976432 1111 113567788999986
Q ss_pred CCCCCHHHHHHHhc-----cccEEEEcccccCh---------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLAS-----EVDIMIHGAATIRF---------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-----~vd~ViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~vST 246 (614)
+ +++.+.+ ++|+|||+||.... .+.+...+++|+.++..+++.+... .+...++++||
T Consensus 58 ~------~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss 131 (225)
T PRK08177 58 A------SLDQLLQRLQGQRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSS 131 (225)
T ss_pred H------HHHHHHHHhhcCCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEcc
Confidence 5 5555544 58999999987421 2445667889999999998887652 12246888888
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
.++.....+.. . ...|+.+|...|.+++..+. .++.+..++
T Consensus 132 ~~g~~~~~~~~----------------------------------~-~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~ 176 (225)
T PRK08177 132 QLGSVELPDGG----------------------------------E-MPLYKASKAALNSMTRSFVAELGEPTLTVLSMH 176 (225)
T ss_pred CccccccCCCC----------------------------------C-ccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEc
Confidence 65432110000 0 13699999999999987754 578899999
Q ss_pred cceeecc
Q psy6053 323 PSIIIPV 329 (614)
Q Consensus 323 p~~I~g~ 329 (614)
||.|-.+
T Consensus 177 PG~i~t~ 183 (225)
T PRK08177 177 PGWVKTD 183 (225)
T ss_pred CCceecC
Confidence 9987443
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=123.31 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=118.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH-HHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR-IEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R-l~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
++++||||||++|.+++++|+++|.. .|+++.|+......... ++++ +. ...++.++.+|+++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~~~~~~~~~~---------~~-----~~~~~~~~~~D~~~ 64 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGAR--HLVLLSRSGPDAPGAAELLAEL---------EA-----LGAEVTVVACDVAD 64 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCC--eEEEEeCCCCCCccHHHHHHHH---------Hh-----cCCeEEEEECCCCC
Confidence 47999999999999999999998754 47888886543221111 1111 11 23468889999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
++ +++.+++ .+|.|||+|+.... .+.++..+++|+.|+.++++++++ .+.++++++||.
T Consensus 65 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~ii~~ss~ 137 (180)
T smart00822 65 RA------ALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRD-LPLDFFVLFSSV 137 (180)
T ss_pred HH------HHHHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhcc-CCcceEEEEccH
Confidence 65 5555543 36999999986432 145677899999999999999987 477899999998
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeeccee
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSII 326 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I 326 (614)
.+..... ....|+.+|...+.++......+++++.+.||.+
T Consensus 138 ~~~~~~~--------------------------------------~~~~y~~sk~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (180)
T smart00822 138 AGVLGNP--------------------------------------GQANYAAANAFLDALAAHRRARGLPATSINWGAW 178 (180)
T ss_pred HHhcCCC--------------------------------------CchhhHHHHHHHHHHHHHHHhcCCceEEEeeccc
Confidence 5422110 0157999999999999766557999999998865
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-12 Score=126.07 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=139.8
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
..++++++||||||.||..++++|.++|++ |+++.|++ +||+++.+ .++.. ..-++.++..|
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~---liLvaR~~------~kL~~la~-----~l~~~----~~v~v~vi~~D 64 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYN---LILVARRE------DKLEALAK-----ELEDK----TGVEVEVIPAD 64 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCcH------HHHHHHHH-----HHHHh----hCceEEEEECc
Confidence 456789999999999999999999999987 88999974 55555432 22211 23468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccChh-------HHHHHHHHHhHHHHHHHHHHHHH-c--CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRFD-------EALKKAVLLNTRGTKMMLSLAKE-M--KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~~-------~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~ 241 (614)
+++++ +...+.+ .+|+.|++||...+. +...+.+++|+.++..+-.+... | .+-.++
T Consensus 65 Ls~~~------~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~I 138 (265)
T COG0300 65 LSDPE------ALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHI 138 (265)
T ss_pred CCChh------HHHHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 99987 6666553 599999999986542 34567899999998777665443 1 244579
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHH----HHHHHHHhhCCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLS----EGLVVEAMNNGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~a----E~lv~~~~~~glp 317 (614)
|.++|..++-+. | .-..|+.||+.. |.+=.+....|+.
T Consensus 139 iNI~S~ag~~p~----------p----------------------------~~avY~ATKa~v~~fSeaL~~EL~~~gV~ 180 (265)
T COG0300 139 INIGSAAGLIPT----------P----------------------------YMAVYSATKAFVLSFSEALREELKGTGVK 180 (265)
T ss_pred EEEechhhcCCC----------c----------------------------chHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 999999764321 1 126899999844 4444444447899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+..+-||.+.....+ . .+... .......-++..++||+..+.++.+.
T Consensus 181 V~~v~PG~~~T~f~~-----~--------------~~~~~---~~~~~~~~~~~~~~va~~~~~~l~~~ 227 (265)
T COG0300 181 VTAVCPGPTRTEFFD-----A--------------KGSDV---YLLSPGELVLSPEDVAEAALKALEKG 227 (265)
T ss_pred EEEEecCcccccccc-----c--------------ccccc---ccccchhhccCHHHHHHHHHHHHhcC
Confidence 999999977544211 0 00000 00111334678899999988888653
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=149.86 Aligned_cols=232 Identities=12% Similarity=0.128 Sum_probs=145.9
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..+++|+||||||||+||++++++|++.|.+ |+++.|+... .+.+.+ .+.... ...++..+.+
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~---Vvi~~r~~~~---~~~~~~--------~l~~~~---~~~~~~~v~~ 472 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAH---VVLADLNLEA---AEAVAA--------EINGQF---GAGRAVALKM 472 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCE---EEEEeCCHHH---HHHHHH--------HHHhhc---CCCcEEEEEC
Confidence 3457899999999999999999999999875 8888886422 111111 111111 1135778999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHH----HcCCCc
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAK----EMKHLE 239 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k 239 (614)
|+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+..+.+.+. +.+.-.
T Consensus 473 Dvtd~~------~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g 546 (676)
T TIGR02632 473 DVTDEQ------AVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGG 546 (676)
T ss_pred CCCCHH------HHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999876 6666655 68999999996431 24466778999999877664443 311134
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+.... | ....|+.||+..|.+++..+. .|
T Consensus 547 ~IV~iSS~~a~~~~----------~----------------------------~~~aY~aSKaA~~~l~r~lA~el~~~g 588 (676)
T TIGR02632 547 NIVFIASKNAVYAG----------K----------------------------NASAYSAAKAAEAHLARCLAAEGGTYG 588 (676)
T ss_pred EEEEEeChhhcCCC----------C----------------------------CCHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 79999997542211 0 015899999999999987655 48
Q ss_pred CCEEEeecceee-cccCCCCccccCCCC---c--hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhc
Q psy6053 316 MPCLMLRPSIII-PVWREPLPGWTDNIN---G--PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ 389 (614)
Q Consensus 316 lp~~IvRp~~I~-g~~~~p~~gw~d~~~---g--~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~ 389 (614)
+++..++|+.|. |+.- .-.+|..... + ...+. .. +.........+..+|+|+++..++.....
T Consensus 589 IrVn~V~Pg~V~~~s~~-~~~~~~~~~~~~~~~~~~~~~-~~--------~~~r~~l~r~v~peDVA~av~~L~s~~~~- 657 (676)
T TIGR02632 589 IRVNTVNPDAVLQGSGI-WDGEWREERAAAYGIPADELE-EH--------YAKRTLLKRHIFPADIAEAVFFLASSKSE- 657 (676)
T ss_pred eEEEEEECCceecCccc-ccccchhhhhhcccCChHHHH-HH--------HHhcCCcCCCcCHHHHHHHHHHHhCCccc-
Confidence 999999999886 3211 0011211100 0 00000 00 01111223457889999999988653321
Q ss_pred CCCCccEEEeccC
Q psy6053 390 KEHRQSIVHLTSS 402 (614)
Q Consensus 390 ~~~~~~vyni~~~ 402 (614)
...+.++++.++
T Consensus 658 -~~TG~~i~vDGG 669 (676)
T TIGR02632 658 -KTTGCIITVDGG 669 (676)
T ss_pred -CCcCcEEEECCC
Confidence 125778888776
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=130.49 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=117.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||||++|++++++|++.|.+ |+++.|+.. ++++.. +.++.. ....+..+.+|+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~---V~~~~r~~~------~~~~~~-----~~l~~~----~~~~~~~~~~D~ 65 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGAT---VILVARHQK------KLEKVY-----DAIVEA----GHPEPFAIRFDL 65 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCE---EEEEeCChH------HHHHHH-----HHHHHc----CCCCcceEEeee
Confidence 46789999999999999999999999875 888888753 222211 111110 113456788898
Q ss_pred CCCCCCCCHHHHHHHh--------ccccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 180 EADELAIKESDRQLLA--------SEVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~--------~~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
++.+ .+++..+. .++|+|||+||... + .+.+...+++|+.|+.++++.+... .+..+
T Consensus 66 ~~~~----~~~~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~ 141 (239)
T PRK08703 66 MSAE----EKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDAS 141 (239)
T ss_pred cccc----hHHHHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCE
Confidence 7632 12233222 46899999999531 1 2455667899999998888877542 23468
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C-C
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N-G 315 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~-g 315 (614)
++++||..+.... | .-..|+.||+..|.+++..+. . +
T Consensus 142 iv~~ss~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~~~ 183 (239)
T PRK08703 142 VIFVGESHGETPK----------A----------------------------YWGGFGASKAALNYLCKVAADEWERFGN 183 (239)
T ss_pred EEEEeccccccCC----------C----------------------------CccchHHhHHHHHHHHHHHHHHhccCCC
Confidence 9999986542110 0 014799999999999877655 2 5
Q ss_pred CCEEEeecceeeccc
Q psy6053 316 MPCLMLRPSIIIPVW 330 (614)
Q Consensus 316 lp~~IvRp~~I~g~~ 330 (614)
+++++++||.|.++.
T Consensus 184 i~v~~v~pG~v~t~~ 198 (239)
T PRK08703 184 LRANVLVPGPINSPQ 198 (239)
T ss_pred eEEEEEecCcccCcc
Confidence 999999999997764
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=132.95 Aligned_cols=228 Identities=14% Similarity=0.108 Sum_probs=146.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|++ |+++.|+.. ++++..+ .++ . ...++.++.+|+
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~---vv~~~~~~~------~~~~~~~-----~~~----~-~~~~~~~~~~Dl 68 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGAT---IVFNDINQE------LVDKGLA-----AYR----E-LGIEAHGYVCDV 68 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCe---EEEEeCCHH------HHHHHHH-----HHH----h-cCCceEEEEcCC
Confidence 36799999999999999999999999876 777777542 2222110 111 0 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +.+.+++ .+|+|||+||.... .+.+...+++|+.|+..+.+.+... .+..++|
T Consensus 69 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 142 (265)
T PRK07097 69 TDED------GVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKII 142 (265)
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9876 5555553 48999999997532 3456778899999998877766531 2457899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||...+.+++..+. .|+.+
T Consensus 143 ~isS~~~~~~~~--------------------------------------~~~~Y~~sKaal~~l~~~la~e~~~~gi~v 184 (265)
T PRK07097 143 NICSMMSELGRE--------------------------------------TVSAYAAAKGGLKMLTKNIASEYGEANIQC 184 (265)
T ss_pred EEcCccccCCCC--------------------------------------CCccHHHHHHHHHHHHHHHHHHhhhcCceE
Confidence 999975421110 015799999999999888766 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+.++||.|..+...+...-... .....+...+... .+ ...+...+|+|++++.++..... ...+.++.
T Consensus 185 ~~v~Pg~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~--~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~ 252 (265)
T PRK07097 185 NGIGPGYIATPQTAPLRELQAD-GSRHPFDQFIIAK-------TP--AARWGDPEDLAGPAVFLASDASN--FVNGHILY 252 (265)
T ss_pred EEEEeccccccchhhhhhcccc-ccchhHHHHHHhc-------CC--ccCCcCHHHHHHHHHHHhCcccC--CCCCCEEE
Confidence 9999999977643321110000 0000010001110 00 11245678999999988765321 12456666
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 253 ~~gg 256 (265)
T PRK07097 253 VDGG 256 (265)
T ss_pred ECCC
Confidence 6655
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=132.68 Aligned_cols=208 Identities=14% Similarity=0.107 Sum_probs=138.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++++|+||||||.||..+++.|++.|.+ |+++.|+. ++++++.+ +.+ ...++..+.+|+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~l~~~~~---------~l~--~~~~~~~~~~Dv 66 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAK---LALVDLEE------AELAALAA---------ELG--GDDRVLTVVADV 66 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------Hhc--CCCcEEEEEecC
Confidence 56899999999999999999999999875 88888863 22332211 011 123566778999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~ 243 (614)
++++ +++.++ ..+|+|||+||.... .+.++..+++|+.|+.++++.+... ++..++|+
T Consensus 67 ~d~~------~v~~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~ 140 (296)
T PRK05872 67 TDLA------AMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQ 140 (296)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9865 555544 358999999997432 3456778999999999999887642 12358999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+..+.+.+.... .|+.+.
T Consensus 141 isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~ 182 (296)
T PRK05872 141 VSSLAAFAAAP--------------------------------------GMAAYCASKAGVEAFANALRLEVAHHGVTVG 182 (296)
T ss_pred EeCHhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHHHHHCcEEE
Confidence 99986543211 015799999999988876543 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
++.||.+..+..... .........+... .. ......++.+|++++++.++..
T Consensus 183 ~v~Pg~v~T~~~~~~-------~~~~~~~~~~~~~-~~------~p~~~~~~~~~va~~i~~~~~~ 234 (296)
T PRK05872 183 SAYLSWIDTDLVRDA-------DADLPAFRELRAR-LP------WPLRRTTSVEKCAAAFVDGIER 234 (296)
T ss_pred EEecCcccchhhhhc-------cccchhHHHHHhh-CC------CcccCCCCHHHHHHHHHHHHhc
Confidence 999998855432110 0000111111111 00 0112357899999999988754
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=149.54 Aligned_cols=196 Identities=14% Similarity=0.191 Sum_probs=137.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||++++++|++.|.+ |+++.|+.. +++++.+ .+.. ...++.++.+|+
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~Dv 429 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGAT---VFLVARNGE------ALDELVA-----EIRA-----KGGTAHAYTCDL 429 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCHH------HHHHHHH-----HHHh-----cCCcEEEEEecC
Confidence 46899999999999999999999999875 888888642 2222111 0110 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC---h------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR---F------DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~---~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+..+
T Consensus 430 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~ 503 (657)
T PRK07201 430 TDSA------AVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGH 503 (657)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCE
Confidence 9876 6666554 5899999999641 1 2456778999999998887665321 35578
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..+.+++..+. .|+
T Consensus 504 iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i 545 (657)
T PRK07201 504 VVNVSSIGVQTNAP--------------------------------------RFSAYVASKAALDAFSDVAASETLSDGI 545 (657)
T ss_pred EEEECChhhcCCCC--------------------------------------CcchHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999987643211 015799999999998877654 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
.+++++||.|..+...+. +. . ......+.+++|+.++.++..
T Consensus 546 ~v~~v~pg~v~T~~~~~~-------------------~~----~----~~~~~~~~~~~a~~i~~~~~~ 587 (657)
T PRK07201 546 TFTTIHMPLVRTPMIAPT-------------------KR----Y----NNVPTISPEEAADMVVRAIVE 587 (657)
T ss_pred cEEEEECCcCcccccCcc-------------------cc----c----cCCCCCCHHHHHHHHHHHHHh
Confidence 999999998865432110 00 0 012357889999999987754
|
|
| >KOG1372|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-13 Score=125.73 Aligned_cols=264 Identities=18% Similarity=0.132 Sum_probs=183.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|..||||-||.=|++|.+-||..|++ |+.++|..+.-+ .+|++.+...|.-. .........||++|
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYe---VHGiiRRsSsFN-T~RIeHlY~nP~~h---------~~~~mkLHYgDmTD 94 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYE---VHGIIRRSSSFN-TARIEHLYSNPHTH---------NGASMKLHYGDMTD 94 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCce---eeEEEeeccccc-hhhhhhhhcCchhc---------ccceeEEeeccccc
Confidence 457899999999999999999999998 899999876654 57888876654311 23567788999999
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEccccc----ChhHHHHHHHHHhHHHHHHHHHHHHHcC--CCceEEEEeCceeccCC
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATI----RFDEALKKAVLLNTRGTKMMLSLAKEMK--HLELFVHISTAYCHLQE 253 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v----~~~~~~~~~~~~Nv~gt~~ll~la~~~~--~~k~~V~vST~~~~~~~ 253 (614)
.. .+.++++ +.+-|+|+||.. +|+-+. -.-++...||.+||++.+.|. .--+|-..||.--++..
T Consensus 95 ss------~L~k~I~~ikPtEiYnLaAQSHVkvSFdlpe-YTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv 167 (376)
T KOG1372|consen 95 SS------CLIKLISTIKPTEVYNLAAQSHVKVSFDLPE-YTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKV 167 (376)
T ss_pred hH------HHHHHHhccCchhhhhhhhhcceEEEeeccc-ceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccc
Confidence 76 6777776 468999999974 455442 234677789999999999873 12368888887444432
Q ss_pred c--ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 254 K--VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 254 ~--~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
. +-.|.. |+-| .++|+.+|..+-.++..+++ +++=.| -|+.+ ..
T Consensus 168 ~e~PQsE~T---PFyP--------------------------RSPYa~aKmy~~WivvNyREAYnmfAc---NGILF-NH 214 (376)
T KOG1372|consen 168 QEIPQSETT---PFYP--------------------------RSPYAAAKMYGYWIVVNYREAYNMFAC---NGILF-NH 214 (376)
T ss_pred cCCCcccCC---CCCC--------------------------CChhHHhhhhheEEEEEhHHhhcceee---ccEee-cC
Confidence 2 334442 2222 27899999999888877776 443332 24333 34
Q ss_pred CCCCccccCCCCchHHHHHHHhcCcee-eEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccH
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVIR-TMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSW 409 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~~-~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~ 409 (614)
+.|..|-.--....+.-+..+..|... ...|+-+..+||-+..|-++|+...+.+. ...-|.+.++ +..|.
T Consensus 215 ESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d------~PdDfViATg--e~hsV 286 (376)
T KOG1372|consen 215 ESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVEAMWLMLQQD------SPDDFVIATG--EQHSV 286 (376)
T ss_pred CCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHHHHHHHHhcC------CCCceEEecC--CcccH
Confidence 555444211111122333344445543 34688999999999999999998888664 4567889998 78899
Q ss_pred HHHHHHHhhhcccccCC
Q psy6053 410 QEIIDIGKSIVTTEVPL 426 (614)
Q Consensus 410 ~e~~~~~~~~~g~~~p~ 426 (614)
+||++......|....+
T Consensus 287 rEF~~~aF~~ig~~l~W 303 (376)
T KOG1372|consen 287 REFCNLAFAEIGEVLNW 303 (376)
T ss_pred HHHHHHHHHhhCcEEee
Confidence 99999988877865443
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-12 Score=127.05 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=144.6
Q ss_pred cccCCcEEEEecccc-cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 98 ETFTGKTLFMTGASG-FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 98 ~~~~~~~VLITGaTG-FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
...++++++||||+| -||..+++.|++.|++ |++..|.... +++.. +.+++..+ ..++..+.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~---V~~~~~~~~~------~~~~~-----~~~~~~~~---~~~~~~~~ 75 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGAR---VVISDIHERR------LGETA-----DELAAELG---LGRVEAVV 75 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCE---EEEEeCCHHH------HHHHH-----HHHHHhcC---CceEEEEE
Confidence 346689999999998 5999999999999876 7777775421 22111 01111111 14688899
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-C
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-L 238 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~ 238 (614)
+|+++++ +++.+++ .+|++||+||.... .+.+...+++|+.|+..+++.+... .+ -
T Consensus 76 ~Dl~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ 149 (262)
T PRK07831 76 CDVTSEA------QVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHG 149 (262)
T ss_pred ccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence 9999865 5655553 57999999996321 2456778899999999888876541 12 3
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.+++++||..+..... ....|+.||+..|.+++..+. +
T Consensus 150 g~iv~~ss~~~~~~~~--------------------------------------~~~~Y~~sKaal~~~~~~la~e~~~~ 191 (262)
T PRK07831 150 GVIVNNASVLGWRAQH--------------------------------------GQAHYAAAKAGVMALTRCSALEAAEY 191 (262)
T ss_pred cEEEEeCchhhcCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhCcc
Confidence 5788888875432110 015799999999999887764 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++..++||.+..+... .. .+......+.... + ..-+...+|+|++++.++..... -..+
T Consensus 192 gI~v~~i~Pg~~~t~~~~-------~~-~~~~~~~~~~~~~-------~--~~r~~~p~~va~~~~~l~s~~~~--~itG 252 (262)
T PRK07831 192 GVRINAVAPSIAMHPFLA-------KV-TSAELLDELAARE-------A--FGRAAEPWEVANVIAFLASDYSS--YLTG 252 (262)
T ss_pred CeEEEEEeeCCccCcccc-------cc-cCHHHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHcCchhc--CcCC
Confidence 899999999988665321 10 1112222221111 0 11245678999999887765431 1245
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.++.+.++
T Consensus 253 ~~i~v~~~ 260 (262)
T PRK07831 253 EVVSVSSQ 260 (262)
T ss_pred ceEEeCCC
Confidence 66655543
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=132.09 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=135.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|+||||||+||+.+++.|++.|.+ |+++.+... ++.++.. +.++. ...++..+.+|+++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~---v~~~~~~~~-----~~~~~~~-----~~~~~-----~~~~~~~~~~Dl~~ 63 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWS---VGINYARDA-----AAAEETA-----DAVRA-----AGGRACVVAGDVAN 63 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCE---EEEEeCCCH-----HHHHHHH-----HHHHh-----cCCcEEEEEeccCC
Confidence 468999999999999999999999876 555544321 1111111 01110 22468899999998
Q ss_pred CCCCCCHHHHHHHh-------ccccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHH-HcCC-----Cce
Q psy6053 182 DELAIKESDRQLLA-------SEVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAK-EMKH-----LEL 240 (614)
Q Consensus 182 ~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~-~~~~-----~k~ 240 (614)
++ +++.++ ..+|+|||+||... + .+.+...+++|+.|+..+++.+. .+.. -.+
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ 137 (248)
T PRK06947 64 EA------DVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGA 137 (248)
T ss_pred HH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 76 554443 35899999998642 1 23456678999999988875433 3311 135
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.... +. ....|+.||+..+.+++..+. .|+
T Consensus 138 ii~~sS~~~~~~~----------~~---------------------------~~~~Y~~sK~~~~~~~~~la~~~~~~~i 180 (248)
T PRK06947 138 IVNVSSIASRLGS----------PN---------------------------EYVDYAGSKGAVDTLTLGLAKELGPHGV 180 (248)
T ss_pred EEEECchhhcCCC----------CC---------------------------CCcccHhhHHHHHHHHHHHHHHhhhhCc
Confidence 9999997542110 00 014699999999988876655 489
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++++|||.|..+... + + ..+.. ..... +.. +. --..++++++++++.++.+... ...+.+
T Consensus 181 ~v~~i~Pg~v~t~~~~----~--~-~~~~~-~~~~~-~~~------~~--~~~~~~e~va~~~~~l~~~~~~--~~~G~~ 241 (248)
T PRK06947 181 RVNAVRPGLIETEIHA----S--G-GQPGR-AARLG-AQT------PL--GRAGEADEVAETIVWLLSDAAS--YVTGAL 241 (248)
T ss_pred EEEEEeccCccccccc----c--c-CCHHH-HHHHh-hcC------CC--CCCcCHHHHHHHHHHHcCcccc--CcCCce
Confidence 9999999998655321 0 0 01111 11111 000 00 1135789999999888765431 124556
Q ss_pred EEecc
Q psy6053 397 VHLTS 401 (614)
Q Consensus 397 yni~~ 401 (614)
+.+.+
T Consensus 242 ~~~~g 246 (248)
T PRK06947 242 LDVGG 246 (248)
T ss_pred EeeCC
Confidence 65543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=124.44 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=129.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+++||||+|.||++++++|.++ .+ |+++.|+.. .+.+|++++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~---vi~~~r~~~---------------------------------~~~~D~~~~ 43 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HE---VITAGRSSG---------------------------------DVQVDITDP 43 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-Cc---EEEEecCCC---------------------------------ceEecCCCh
Confidence 57999999999999999999987 44 888888531 246899986
Q ss_pred CCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-cCCCceEEEEeCceecc
Q psy6053 183 ELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-MKHLELFVHISTAYCHL 251 (614)
Q Consensus 183 ~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~V~vST~~~~~ 251 (614)
+ +++.+++ ++|+|||+||.... .+.+...+++|+.|+.++++.+.. +.+...++++||..+..
T Consensus 44 ~------~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~ 117 (199)
T PRK07578 44 A------SIRALFEKVGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE 117 (199)
T ss_pred H------HHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC
Confidence 6 6666655 68999999996432 245667789999999999998865 22335799999876532
Q ss_pred CCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEeecceeec
Q psy6053 252 QEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLRPSIIIP 328 (614)
Q Consensus 252 ~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvRp~~I~g 328 (614)
.. +. ...|+.||+..+.+.+..+. .|+.+..+.||.+-.
T Consensus 118 ~~---~~-----------------------------------~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t 159 (199)
T PRK07578 118 PI---PG-----------------------------------GASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTE 159 (199)
T ss_pred CC---CC-----------------------------------chHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccC
Confidence 11 00 15799999998888776544 488899999987632
Q ss_pred ccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 329 VWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 329 ~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
+.. . .+. .+++ ...++.+++|++++.++.... .++++++
T Consensus 160 ~~~---------------~-----~~~--~~~~-----~~~~~~~~~a~~~~~~~~~~~-----~g~~~~~ 198 (199)
T PRK07578 160 SLE---------------K-----YGP--FFPG-----FEPVPAARVALAYVRSVEGAQ-----TGEVYKV 198 (199)
T ss_pred chh---------------h-----hhh--cCCC-----CCCCCHHHHHHHHHHHhccce-----eeEEecc
Confidence 210 0 000 0111 235799999999988876432 5667765
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=128.28 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=115.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++++||||||+||++++++|++.|.+ |+++.|.... .+++. ..+++++.+|++++
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~---v~~~~r~~~~---~~~~~-------------------~~~~~~~~~D~~~~ 56 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWR---VIATARDAAA---LAALQ-------------------ALGAEALALDVADP 56 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCE---EEEEECCHHH---HHHHH-------------------hccceEEEecCCCH
Confidence 68999999999999999999999865 8888886421 11111 12356789999997
Q ss_pred CCCCCHHHHHHHh---c--cccEEEEcccccC---------hhHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLA---S--EVDIMIHGAATIR---------FDEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~---~--~vd~ViH~AA~v~---------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~vST 246 (614)
+ +++.+. . ++|+|||+|+... ..+.++..+++|+.|+.++++.+..+ .+-.+++++||
T Consensus 57 ~------~v~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS 130 (222)
T PRK06953 57 A------SVAGLAWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS 130 (222)
T ss_pred H------HHHHHHHHhcCCCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence 6 555543 2 4899999998752 23456778999999999999988752 12246899988
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecc
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPS 324 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~ 324 (614)
..+.....+ . .....|+.+|...+.+++.... .+++++.++||
T Consensus 131 ~~~~~~~~~---------~--------------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg 175 (222)
T PRK06953 131 RMGSIGDAT---------G--------------------------TTGWLYRASKAALNDALRAASLQARHATCIALHPG 175 (222)
T ss_pred ccccccccc---------C--------------------------CCccccHHhHHHHHHHHHHHhhhccCcEEEEECCC
Confidence 743211100 0 0013699999999999988765 47889999999
Q ss_pred eeecc
Q psy6053 325 IIIPV 329 (614)
Q Consensus 325 ~I~g~ 329 (614)
.|..+
T Consensus 176 ~i~t~ 180 (222)
T PRK06953 176 WVRTD 180 (222)
T ss_pred eeecC
Confidence 87543
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=131.28 Aligned_cols=168 Identities=19% Similarity=0.137 Sum_probs=118.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|.||+.++++|++.|.+ |++..|+.. ++++..+ .++.. ...++.++.+|+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~~----~~~~~~~~~~Dv 67 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGAD---VILLSRNEE------NLKKARE-----KIKSE----SNVDVSYIVADL 67 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHhh----cCCceEEEEecC
Confidence 56899999999999999999999999876 788888642 2222110 11110 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V~ 243 (614)
++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|...+.+.+.. + ++..++|+
T Consensus 68 ~~~~------~i~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~ 141 (263)
T PRK08339 68 TKRE------DLERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIY 141 (263)
T ss_pred CCHH------HHHHHHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9976 5665554 58999999986432 356778899998886666554432 1 34568999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.+|+..+.+.+..+. +|+.+.
T Consensus 142 isS~~~~~~~~--------------------------------------~~~~y~asKaal~~l~~~la~el~~~gIrVn 183 (263)
T PRK08339 142 STSVAIKEPIP--------------------------------------NIALSNVVRISMAGLVRTLAKELGPKGITVN 183 (263)
T ss_pred EcCccccCCCC--------------------------------------cchhhHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 99986532110 014699999988887776654 689999
Q ss_pred Eeecceeecc
Q psy6053 320 MLRPSIIIPV 329 (614)
Q Consensus 320 IvRp~~I~g~ 329 (614)
.+.||.|-.+
T Consensus 184 ~v~PG~v~T~ 193 (263)
T PRK08339 184 GIMPGIIRTD 193 (263)
T ss_pred EEEeCcCccH
Confidence 9999988543
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=132.88 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=118.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||++++++|++.|++ |+++.|+. ++++++.. . ...++..+.+|+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~l~~---------~----~~~~~~~~~~D~ 60 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGAR---VAVLDKSA------AGLQELEA---------A----HGDAVVGVEGDV 60 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHh---------h----cCCceEEEEecc
Confidence 35799999999999999999999999876 77888753 22332211 0 224688899999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------h-----HHHHHHHHHhHHHHHHHHHHHHHc--CCC
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------D-----EALKKAVLLNTRGTKMMLSLAKEM--KHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~-----~~~~~~~~~Nv~gt~~ll~la~~~--~~~ 238 (614)
++++ +.+.++ .++|++||+||.... . +.++..+++|+.|+..+++++... +.-
T Consensus 61 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~ 134 (262)
T TIGR03325 61 RSLD------DHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR 134 (262)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC
Confidence 9865 444443 357999999985321 1 246678999999999999988652 122
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CC
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NG 315 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~g 315 (614)
.++|++||..+.... + ....|+.||+..+.+++..+. .+
T Consensus 135 g~iv~~sS~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~l~~~la~e~~~~ 176 (262)
T TIGR03325 135 GSVIFTISNAGFYPN----------G----------------------------GGPLYTAAKHAVVGLVKELAFELAPY 176 (262)
T ss_pred CCEEEEeccceecCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHhhccC
Confidence 478999887543211 0 014799999999999988766 24
Q ss_pred CCEEEeecceeecc
Q psy6053 316 MPCLMLRPSIIIPV 329 (614)
Q Consensus 316 lp~~IvRp~~I~g~ 329 (614)
+.+..+.||.|..+
T Consensus 177 irvn~i~PG~i~t~ 190 (262)
T TIGR03325 177 VRVNGVAPGGMSSD 190 (262)
T ss_pred eEEEEEecCCCcCC
Confidence 88999999988654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-12 Score=124.75 Aligned_cols=209 Identities=11% Similarity=0.081 Sum_probs=136.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+++||||+|+||.+++++|++.|.+ |+++.|+... ..+.++ . .++.++.+|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~--~~~~~~------------------~-~~~~~~~~D~~~ 57 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQP---VIVSYRTHYP--AIDGLR------------------Q-AGAQCIQADFST 57 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCe---EEEEeCCchh--HHHHHH------------------H-cCCEEEEcCCCC
Confidence 578999999999999999999999876 8888886532 111111 1 136788999998
Q ss_pred CCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC--CceEE
Q psy6053 182 DELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH--LELFV 242 (614)
Q Consensus 182 ~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~--~k~~V 242 (614)
++ +.+.++ .++|++||+||.... .+.++..+++|+.++..+.+.+... .+ ..++|
T Consensus 58 ~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv 131 (236)
T PRK06483 58 NA------GIMAFIDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDII 131 (236)
T ss_pred HH------HHHHHHHHHHhhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEE
Confidence 76 444433 248999999986321 3557778999999998777666542 12 35799
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCL 319 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~ 319 (614)
++||....... | ....|+.||+..|.+++..+. .++.+.
T Consensus 132 ~~ss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~~a~e~~~~irvn 173 (236)
T PRK06483 132 HITDYVVEKGS----------D----------------------------KHIAYAASKAALDNMTLSFAAKLAPEVKVN 173 (236)
T ss_pred EEcchhhccCC----------C----------------------------CCccHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 99887542110 0 015799999999999988766 368999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.+..... + ............. .. -....+|+|+++..++.... ..+.++.+
T Consensus 174 ~v~Pg~~~~~~~-------~----~~~~~~~~~~~~~--------~~-~~~~~~~va~~~~~l~~~~~----~~G~~i~v 229 (236)
T PRK06483 174 SIAPALILFNEG-------D----DAAYRQKALAKSL--------LK-IEPGEEEIIDLVDYLLTSCY----VTGRSLPV 229 (236)
T ss_pred EEccCceecCCC-------C----CHHHHHHHhccCc--------cc-cCCCHHHHHHHHHHHhcCCC----cCCcEEEe
Confidence 999998742210 0 0111111111110 00 12346899999988875322 36677777
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 230 dgg 232 (236)
T PRK06483 230 DGG 232 (236)
T ss_pred Ccc
Confidence 655
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-12 Score=140.27 Aligned_cols=221 Identities=13% Similarity=0.131 Sum_probs=147.6
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
...+|+++||||+|.||..++++|++.|.+ |+++.|+. ++++++.+ + ...++..+.+|
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D 323 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDR---LLIIDRDA------EGAKKLAE---------A----LGDEHLSVQAD 323 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----hCCceeEEEcc
Confidence 457899999999999999999999999865 88888853 23332211 0 12356778999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V 242 (614)
+++++ +++.+++ .+|++||+||... + .+.++..+++|+.|+.++++.+... .+-.++|
T Consensus 324 ~~~~~------~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv 397 (520)
T PRK06484 324 ITDEA------AVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIV 397 (520)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEE
Confidence 99876 5555543 4899999999642 1 2456778999999999999988752 2335899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+++..+. +|+++
T Consensus 398 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~e~~~~gI~v 439 (520)
T PRK06484 398 NLGSIASLLALP--------------------------------------PRNAYCASKAAVTMLSRSLACEWAPAGIRV 439 (520)
T ss_pred EECchhhcCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999986532210 015799999999988887654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..+.||.|..+..... .+ ... .....+.+.. + ...+...+|+|++++.++..... ...++++.
T Consensus 440 n~v~PG~v~t~~~~~~---~~--~~~-~~~~~~~~~~----~-----~~~~~~~~dia~~~~~l~s~~~~--~~~G~~i~ 502 (520)
T PRK06484 440 NTVAPGYIETPAVLAL---KA--SGR-ADFDSIRRRI----P-----LGRLGDPEEVAEAIAFLASPAAS--YVNGATLT 502 (520)
T ss_pred EEEEeCCccCchhhhh---cc--ccH-HHHHHHHhcC----C-----CCCCcCHHHHHHHHHHHhCcccc--CccCcEEE
Confidence 9999998865432100 00 000 0111111111 0 01245789999999888754321 13577787
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 503 vdgg 506 (520)
T PRK06484 503 VDGG 506 (520)
T ss_pred ECCC
Confidence 7665
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=132.26 Aligned_cols=164 Identities=18% Similarity=0.232 Sum_probs=118.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||.+++++|++.|++ |+++.|++. +++++.+ + ...++.++.+|+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~---------~----~~~~~~~~~~D~ 61 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGAR---VAVLERSAE------KLASLRQ---------R----FGDHVLVVEGDV 61 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH---------H----hCCcceEEEccC
Confidence 46799999999999999999999999876 888888642 2222211 0 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------h-H----HHHHHHHHhHHHHHHHHHHHHHc--CCC
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------D-E----ALKKAVLLNTRGTKMMLSLAKEM--KHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~-~----~~~~~~~~Nv~gt~~ll~la~~~--~~~ 238 (614)
++++ +.+.+++ .+|++||+||.... . + .++..+++|+.|+..+++.+... +.-
T Consensus 62 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 135 (263)
T PRK06200 62 TSYA------DNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASG 135 (263)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcC
Confidence 9865 5554443 58999999996421 1 1 25567889999999988887642 122
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CC
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NG 315 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~g 315 (614)
.++|++||..+..... ....|+.||+..+.+++..+. .+
T Consensus 136 g~iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~el~~~ 177 (263)
T PRK06200 136 GSMIFTLSNSSFYPGG--------------------------------------GGPLYTASKHAVVGLVRQLAYELAPK 177 (263)
T ss_pred CEEEEECChhhcCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 4799999986532210 014799999999998887665 35
Q ss_pred CCEEEeecceeecc
Q psy6053 316 MPCLMLRPSIIIPV 329 (614)
Q Consensus 316 lp~~IvRp~~I~g~ 329 (614)
+.+..+.||.|..+
T Consensus 178 Irvn~i~PG~i~t~ 191 (263)
T PRK06200 178 IRVNGVAPGGTVTD 191 (263)
T ss_pred cEEEEEeCCccccC
Confidence 89999999988554
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-12 Score=127.37 Aligned_cols=223 Identities=16% Similarity=0.116 Sum_probs=136.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||.++++.|++.|.. |++..|+... ..+.+.+. ++. ...++.++.+|+
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~---vvi~~~~~~~--~~~~~~~~--------l~~-----~~~~~~~~~~Dl 66 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAK---VVINYRSDEE--EANDVAEE--------IKK-----AGGEAIAVKGDV 66 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCCHH--HHHHHHHH--------HHH-----cCCeEEEEEecC
Confidence 56899999999999999999999999865 6666664321 11111111 111 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC---h----hHHHHHHHHHhHHHHHHHHH----HHHHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR---F----DEALKKAVLLNTRGTKMMLS----LAKEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~---~----~~~~~~~~~~Nv~gt~~ll~----la~~~~~~k~~ 241 (614)
++++ ++..+++ .+|++||+|+... + .+.++..+++|+.|+..+++ .+++.+.-.++
T Consensus 67 ~~~~------~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~i 140 (261)
T PRK08936 67 TVES------DVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNI 140 (261)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9865 5555443 5899999999642 1 24466778999888765544 44442223689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh----hCCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM----NNGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~----~~glp 317 (614)
|++||....... | ....|+.||+..+.+.+... .+|++
T Consensus 141 v~~sS~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~ 182 (261)
T PRK08936 141 INMSSVHEQIPW----------P----------------------------LFVHYAASKGGVKLMTETLAMEYAPKGIR 182 (261)
T ss_pred EEEccccccCCC----------C----------------------------CCcccHHHHHHHHHHHHHHHHHHhhcCeE
Confidence 999997542211 0 01579999976666655543 36899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++.++||.|-.+.... ....+. ........ . + ...+...+++++++..++..... ...+..+
T Consensus 183 v~~v~pg~v~t~~~~~------~~~~~~-~~~~~~~~-~---~-----~~~~~~~~~va~~~~~l~s~~~~--~~~G~~i 244 (261)
T PRK08936 183 VNNIGPGAINTPINAE------KFADPK-QRADVESM-I---P-----MGYIGKPEEIAAVAAWLASSEAS--YVTGITL 244 (261)
T ss_pred EEEEEECcCCCCcccc------ccCCHH-HHHHHHhc-C---C-----CCCCcCHHHHHHHHHHHcCcccC--CccCcEE
Confidence 9999999886653211 111111 11111111 0 0 11255678999998887764321 1244455
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+..+
T Consensus 245 ~~d~g 249 (261)
T PRK08936 245 FADGG 249 (261)
T ss_pred EECCC
Confidence 55443
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=128.56 Aligned_cols=225 Identities=12% Similarity=0.026 Sum_probs=139.2
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||||+||++++++|++.|.+ |++..|+.. +++++..+ .++.. ...++.++.+|
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~---v~~~~~~~~-----~~~~~~~~-----~~~~~----~~~~~~~~~~D 67 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN---IAFTYNSNV-----EEANKIAE-----DLEQK----YGIKAKAYPLN 67 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEcCCCH-----HHHHHHHH-----HHHHh----cCCceEEEEcC
Confidence 357899999999999999999999999876 666655432 22222111 01100 22468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEccccc---------Ch----hHHHHHHHHHhHHHHHHHHHHHHH-c--
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATI---------RF----DEALKKAVLLNTRGTKMMLSLAKE-M-- 235 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v---------~~----~~~~~~~~~~Nv~gt~~ll~la~~-~-- 235 (614)
+++++ +++.+++ ++|++||+|+.. .+ .+.+...+++|+.+...+.+.+.. +
T Consensus 68 ~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 141 (260)
T PRK08416 68 ILEPE------TYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEK 141 (260)
T ss_pred CCCHH------HHHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhc
Confidence 99876 5555543 579999999742 11 234566788888887666554433 1
Q ss_pred CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--
Q psy6053 236 KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-- 313 (614)
Q Consensus 236 ~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-- 313 (614)
.+..++|++||..+.... | ....|+.||+..+.+++..+.
T Consensus 142 ~~~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~el 183 (260)
T PRK08416 142 VGGGSIISLSSTGNLVYI----------E----------------------------NYAGHGTSKAAVETMVKYAATEL 183 (260)
T ss_pred cCCEEEEEEeccccccCC----------C----------------------------CcccchhhHHHHHHHHHHHHHHh
Confidence 234689999997542111 0 015899999999999887665
Q ss_pred --CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC
Q psy6053 314 --NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391 (614)
Q Consensus 314 --~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~ 391 (614)
+|+.+..+.||.|-.+..... .+............ + ..-+...+|+|++++.++..... -
T Consensus 184 ~~~gi~v~~v~PG~i~T~~~~~~-------~~~~~~~~~~~~~~-------~--~~r~~~p~~va~~~~~l~~~~~~--~ 245 (260)
T PRK08416 184 GEKNIRVNAVSGGPIDTDALKAF-------TNYEEVKAKTEELS-------P--LNRMGQPEDLAGACLFLCSEKAS--W 245 (260)
T ss_pred hhhCeEEEEEeeCcccChhhhhc-------cCCHHHHHHHHhcC-------C--CCCCCCHHHHHHHHHHHcChhhh--c
Confidence 589999999997743321111 11011111111110 0 11245689999999888754321 1
Q ss_pred CCccEEEeccC
Q psy6053 392 HRQSIVHLTSS 402 (614)
Q Consensus 392 ~~~~vyni~~~ 402 (614)
..+..+.+.++
T Consensus 246 ~~G~~i~vdgg 256 (260)
T PRK08416 246 LTGQTIVVDGG 256 (260)
T ss_pred ccCcEEEEcCC
Confidence 24566666544
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=129.79 Aligned_cols=222 Identities=9% Similarity=0.026 Sum_probs=134.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++++||||+|+||.+++++|++.|.+ |+++.|.... ..+.+.+. +... ...++..+.+|++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~---V~~~~~~~~~--~~~~~~~~--------l~~~----~~~~~~~~~~Dv~d~ 64 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYR---VVLHYHRSAA--AASTLAAE--------LNAR----RPNSAVTCQADLSNS 64 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCe---EEEEcCCcHH--HHHHHHHH--------HHhc----cCCceEEEEccCCCc
Confidence 57999999999999999999999876 7777665321 11111111 1110 123567789999997
Q ss_pred CCCCCHHHHHHHh-------ccccEEEEcccccCh--------h----------HHHHHHHHHhHHHHHHHHHHHHHcC-
Q psy6053 183 ELAIKESDRQLLA-------SEVDIMIHGAATIRF--------D----------EALKKAVLLNTRGTKMMLSLAKEMK- 236 (614)
Q Consensus 183 ~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~--------~----------~~~~~~~~~Nv~gt~~ll~la~~~~- 236 (614)
+- + .+..+.+. .++|+|||+||.... . ..+...+++|+.|+..+++.+...-
T Consensus 65 ~~-~-~~~~~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~ 142 (267)
T TIGR02685 65 AT-L-FSRCEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQA 142 (267)
T ss_pred hh-h-HHHHHHHHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 51 0 00112222 368999999985321 1 1356789999999999988765321
Q ss_pred C--------CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHH
Q psy6053 237 H--------LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLV 308 (614)
Q Consensus 237 ~--------~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv 308 (614)
+ -..++++||....... .....|+.||+..|.++
T Consensus 143 ~~~~~~~~~~~~iv~~~s~~~~~~~--------------------------------------~~~~~Y~asK~a~~~~~ 184 (267)
T TIGR02685 143 GTRAEQRSTNLSIVNLCDAMTDQPL--------------------------------------LGFTMYTMAKHALEGLT 184 (267)
T ss_pred hcccccCCCCeEEEEehhhhccCCC--------------------------------------cccchhHHHHHHHHHHH
Confidence 1 1246667665432110 01158999999999998
Q ss_pred HHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHH
Q psy6053 309 VEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIW 384 (614)
Q Consensus 309 ~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~ 384 (614)
+..+. .|++++.++||.+..+... . .......... . + ........++++++++.++.
T Consensus 185 ~~la~e~~~~gi~v~~v~PG~~~~~~~~----------~-~~~~~~~~~~-~---~----~~~~~~~~~~va~~~~~l~~ 245 (267)
T TIGR02685 185 RSAALELAPLQIRVNGVAPGLSLLPDAM----------P-FEVQEDYRRK-V---P----LGQREASAEQIADVVIFLVS 245 (267)
T ss_pred HHHHHHHhhhCeEEEEEecCCccCcccc----------c-hhHHHHHHHh-C---C----CCcCCCCHHHHHHHHHHHhC
Confidence 87654 5899999999987543211 0 0111111110 0 0 00123577999999998876
Q ss_pred hhhhcCCCCccEEEeccC
Q psy6053 385 AYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 385 ~~~~~~~~~~~vyni~~~ 402 (614)
.... ...+..+.+.++
T Consensus 246 ~~~~--~~~G~~~~v~gg 261 (267)
T TIGR02685 246 PKAK--YITGTCIKVDGG 261 (267)
T ss_pred cccC--CcccceEEECCc
Confidence 4321 125666666655
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-12 Score=130.03 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=113.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+++||||||+||..+++.|++.|.+ |+++.|+... .+.+.+ .++.. ....+.++.+|++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~---vv~~~r~~~~---~~~~~~--------~~~~~----~~~~~~~~~~D~~~~ 62 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAE---LFLTDRDADG---LAQTVA--------DARAL----GGTVPEHRALDISDY 62 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHH--------HHHhc----CCCcceEEEeeCCCH
Confidence 57999999999999999999999865 7778875421 111111 11110 112355678999986
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH----cCCCceEEEE
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE----MKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~~~k~~V~v 244 (614)
+ +.+.+.+ ++|+|||+||.... .+.++..+++|+.|+.++++.+.. .+...++|++
T Consensus 63 ~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~i 136 (272)
T PRK07832 63 D------AVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNV 136 (272)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5 4444433 47999999986421 345677899999999999998753 1223589999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh----hCCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM----NNGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~----~~glp~~I 320 (614)
||..+.... | ....|+.||+..+.+.+... ..++++++
T Consensus 137 sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~ 178 (272)
T PRK07832 137 SSAAGLVAL----------P----------------------------WHAAYSASKFGLRGLSEVLRFDLARHGIGVSV 178 (272)
T ss_pred ccccccCCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 997542111 0 11579999986666655443 36899999
Q ss_pred eecceeeccc
Q psy6053 321 LRPSIIIPVW 330 (614)
Q Consensus 321 vRp~~I~g~~ 330 (614)
++||.+.++.
T Consensus 179 v~Pg~v~t~~ 188 (272)
T PRK07832 179 VVPGAVKTPL 188 (272)
T ss_pred EecCcccCcc
Confidence 9999997664
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-11 Score=127.78 Aligned_cols=170 Identities=17% Similarity=0.252 Sum_probs=116.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+.++||||||+||++++++|++.|.+ |+++.|+. +++++..+ .++...+ ..++..+.+|+++
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~---Vil~~R~~------~~l~~~~~-----~l~~~~~---~~~~~~~~~Dl~~ 115 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLN---LVLVARNP------DKLKDVSD-----SIQSKYS---KTQIKTVVVDFSG 115 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCC---EEEEECCH------HHHHHHHH-----HHHHHCC---CcEEEEEEEECCC
Confidence 789999999999999999999999976 88888864 23332211 1121111 1367788899985
Q ss_pred CCCCCCHHHHHHH---hc--cccEEEEcccccC-----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 182 DELAIKESDRQLL---AS--EVDIMIHGAATIR-----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l---~~--~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
.. .+.++.+ +. ++|++||+||... + .+.++..+++|+.|+..+.+.+... .+..++|++
T Consensus 116 ~~----~~~~~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~i 191 (320)
T PLN02780 116 DI----DEGVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINI 191 (320)
T ss_pred Cc----HHHHHHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 21 1233333 33 3569999998642 1 2345678999999999998887531 245689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... +.| ....|+.||+..+.+.+..+. .|+.+..
T Consensus 192 SS~a~~~~~--------~~p----------------------------~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~ 235 (320)
T PLN02780 192 GSGAAIVIP--------SDP----------------------------LYAVYAATKAYIDQFSRCLYVEYKKSGIDVQC 235 (320)
T ss_pred echhhccCC--------CCc----------------------------cchHHHHHHHHHHHHHHHHHHHHhccCeEEEE
Confidence 998653210 001 015899999999888877654 5899999
Q ss_pred eecceeec
Q psy6053 321 LRPSIIIP 328 (614)
Q Consensus 321 vRp~~I~g 328 (614)
+.||.|-.
T Consensus 236 v~PG~v~T 243 (320)
T PLN02780 236 QVPLYVAT 243 (320)
T ss_pred EeeCceec
Confidence 99998844
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=121.06 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=128.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||+||+.++++|+++|+++ .|....|..... . ...++.++++|++++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~-~v~~~~~~~~~~---------------------~---~~~~~~~~~~Dls~~ 55 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDA-TVHATYRHHKPD---------------------F---QHDNVQWHALDVTDE 55 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCC-EEEEEccCCccc---------------------c---ccCceEEEEecCCCH
Confidence 589999999999999999999997664 455555543211 0 224688899999987
Q ss_pred CCCCCHHHHHHH---hccccEEEEcccccCh-------------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEEE
Q psy6053 183 ELAIKESDRQLL---ASEVDIMIHGAATIRF-------------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFVH 243 (614)
Q Consensus 183 ~lGLs~~~~~~l---~~~vd~ViH~AA~v~~-------------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V~ 243 (614)
+ +.+.+ +.++|+|||+||.... .+.+...+++|+.|+..+.+.+.. + .+..++++
T Consensus 56 ~------~~~~~~~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~ 129 (235)
T PRK09009 56 A------EIKQLSEQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAV 129 (235)
T ss_pred H------HHHHHHHhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEE
Confidence 6 44443 4579999999997531 133556789999999888877765 2 12357889
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCCC
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGMP 317 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~glp 317 (614)
+||..+... +...+ + ...|+.+|+..+.+.+..+. .++.
T Consensus 130 iss~~~~~~-----~~~~~-----------------------------~-~~~Y~asK~a~~~~~~~la~e~~~~~~~i~ 174 (235)
T PRK09009 130 ISAKVGSIS-----DNRLG-----------------------------G-WYSYRASKAALNMFLKTLSIEWQRSLKHGV 174 (235)
T ss_pred Eeecccccc-----cCCCC-----------------------------C-cchhhhhHHHHHHHHHHHHHHhhcccCCeE
Confidence 987543110 00000 0 14799999999998877653 2778
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+..+.||.+-.+...+ .... .....+...+++|++++.++....
T Consensus 175 v~~v~PG~v~t~~~~~-----------------~~~~---------~~~~~~~~~~~~a~~~~~l~~~~~ 218 (235)
T PRK09009 175 VLALHPGTTDTALSKP-----------------FQQN---------VPKGKLFTPEYVAQCLLGIIANAT 218 (235)
T ss_pred EEEEcccceecCCCcc-----------------hhhc---------cccCCCCCHHHHHHHHHHHHHcCC
Confidence 8889998875542210 0000 011225678999999999887653
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=144.25 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=121.8
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..++++++|||||||+||++++++|++.|++ |+++.|+... .+.+.+.+ +. ...++.++.+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~---v~~~~r~~~~---~~~~~~~~--------~~-----~~~~~~~~~~ 371 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE---VVASDIDEAA---AERTAELI--------RA-----AGAVAHAYRV 371 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHH--------Hh-----cCCeEEEEEc
Confidence 3456789999999999999999999999876 8888886421 12221111 10 2246889999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-Cc
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LE 239 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k 239 (614)
|+++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+ -.
T Consensus 372 Dv~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g 445 (582)
T PRK05855 372 DVSDAD------AMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGG 445 (582)
T ss_pred CCCCHH------HHHHHHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc
Confidence 999976 5655554 48999999997532 3456778999999999988876431 12 25
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+..... .-..|+.||+..+.+.+..+. .|
T Consensus 446 ~iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~l~~e~~~~g 487 (582)
T PRK05855 446 HIVNVASAAAYAPSR--------------------------------------SLPAYATSKAAVLMLSECLRAELAAAG 487 (582)
T ss_pred EEEEECChhhccCCC--------------------------------------CCcHHHHHHHHHHHHHHHHHHHhcccC
Confidence 899999987643211 015799999988877765543 58
Q ss_pred CCEEEeecceeecc
Q psy6053 316 MPCLMLRPSIIIPV 329 (614)
Q Consensus 316 lp~~IvRp~~I~g~ 329 (614)
++++.++||.|-.+
T Consensus 488 i~v~~v~Pg~v~t~ 501 (582)
T PRK05855 488 IGVTAICPGFVDTN 501 (582)
T ss_pred cEEEEEEeCCCccc
Confidence 99999999988543
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-12 Score=125.83 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=113.7
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|+||||||+||.++++.|++.|.+ |+++.|.... +.++.. +.++. ...++.++.+|+++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~---v~~~~~~~~~-----~~~~~~-----~~l~~-----~~~~~~~~~~Dl~~~~- 61 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFE---ICVHYHSGRS-----DAESVV-----SAIQA-----QGGNARLLQFDVADRV- 61 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCCHH-----HHHHHH-----HHHHH-----cCCeEEEEEccCCCHH-
Confidence 689999999999999999999876 7777775421 111111 01111 2346889999999976
Q ss_pred CCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHH-Hc---CCCceEEEEeC
Q psy6053 185 AIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAK-EM---KHLELFVHIST 246 (614)
Q Consensus 185 GLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~-~~---~~~k~~V~vST 246 (614)
++..+++ .+|++||+|+... ..+.++..+++|+.|+.++++.+. .+ .+..++|++||
T Consensus 62 -----~~~~~~~~~~~~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS 136 (239)
T TIGR01831 62 -----ACRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLAS 136 (239)
T ss_pred -----HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 5554443 4799999998642 234567789999999999988652 11 24468999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+.... | ....|+.||+..+.+.+.... .|++++.++
T Consensus 137 ~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 178 (239)
T TIGR01831 137 VSGVMGN----------R----------------------------GQVNYSAAKAGLIGATKALAVELAKRKITVNCIA 178 (239)
T ss_pred hhhccCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEE
Confidence 7542111 0 014799999987777665543 589999999
Q ss_pred cceeecc
Q psy6053 323 PSIIIPV 329 (614)
Q Consensus 323 p~~I~g~ 329 (614)
||.+.++
T Consensus 179 Pg~v~t~ 185 (239)
T TIGR01831 179 PGLIDTE 185 (239)
T ss_pred EccCccc
Confidence 9988655
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=126.86 Aligned_cols=224 Identities=11% Similarity=0.087 Sum_probs=140.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC---cCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG---KNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~---~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
.+++|+++||||+|.||..++++|++.|.+ |+++.|.... ....+++++..+ .++ . ...++.++
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~---vii~~~~~~~~~~~~~~~~~~~~~~-----~l~----~-~~~~~~~~ 69 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR---VVVNDIGVGLDGSASGGSAAQAVVD-----EIV----A-AGGEAVAN 69 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEeeCCccccccccchhHHHHHHH-----HHH----h-cCCceEEE
Confidence 357899999999999999999999999876 6666665310 001122222211 111 1 23467889
Q ss_pred eCCCCCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-
Q psy6053 176 SGDAEADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH- 237 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~- 237 (614)
.+|+++++ +...++ ..+|++||+||.... .+.++..+++|+.|+..+++.+... ..
T Consensus 70 ~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~ 143 (286)
T PRK07791 70 GDDIADWD------GAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESK 143 (286)
T ss_pred eCCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcc
Confidence 99999876 554443 358999999997431 3557788999999998888776531 01
Q ss_pred -----CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh
Q psy6053 238 -----LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM 312 (614)
Q Consensus 238 -----~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~ 312 (614)
-.++|++||..+.... | ....|+.||+..+.+.+..+
T Consensus 144 ~~~~~~g~Iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la 185 (286)
T PRK07791 144 AGRAVDARIINTSSGAGLQGS----------V----------------------------GQGNYSAAKAGIAALTLVAA 185 (286)
T ss_pred cCCCCCcEEEEeCchhhCcCC----------C----------------------------CchhhHHHHHHHHHHHHHHH
Confidence 1479999997543211 0 01579999999888877654
Q ss_pred h----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhh
Q psy6053 313 N----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388 (614)
Q Consensus 313 ~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~ 388 (614)
. +|+.+..+.|| +..+ .. . ......... . +.........+|+|++++.++.....
T Consensus 186 ~el~~~gIrVn~v~Pg-~~T~----~~-------~--~~~~~~~~~-----~--~~~~~~~~~pedva~~~~~L~s~~~~ 244 (286)
T PRK07791 186 AELGRYGVTVNAIAPA-ARTR----MT-------E--TVFAEMMAK-----P--EEGEFDAMAPENVSPLVVWLGSAESR 244 (286)
T ss_pred HHHHHhCeEEEEECCC-CCCC----cc-------h--hhHHHHHhc-----C--cccccCCCCHHHHHHHHHHHhCchhc
Confidence 4 58999999998 3111 10 0 011111110 0 11112345689999999988754321
Q ss_pred cCCCCccEEEeccC
Q psy6053 389 QKEHRQSIVHLTSS 402 (614)
Q Consensus 389 ~~~~~~~vyni~~~ 402 (614)
...+.++.+.++
T Consensus 245 --~itG~~i~vdgG 256 (286)
T PRK07791 245 --DVTGKVFEVEGG 256 (286)
T ss_pred --CCCCcEEEEcCC
Confidence 135677777665
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-11 Score=121.00 Aligned_cols=219 Identities=12% Similarity=0.110 Sum_probs=141.9
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+++||||+ +-||+.++++|++.|.+ |++..|+. ...+.++++ ...++.++.+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~---Vi~~~r~~---~~~~~~~~~----------------~~~~~~~~~~ 62 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGAT---VIYTYQND---RMKKSLQKL----------------VDEEDLLVEC 62 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCE---EEEecCch---HHHHHHHhh----------------ccCceeEEeC
Confidence 568999999999 79999999999999876 77777752 122222222 1135778999
Q ss_pred CCCCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-CCC
Q psy6053 178 DAEADELAIKESDRQLLA-------SEVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-KHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~ 238 (614)
|+++++ +.+.++ .++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-
T Consensus 63 Dl~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~ 136 (252)
T PRK06079 63 DVASDE------SIERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPG 136 (252)
T ss_pred CCCCHH------HHHHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccC
Confidence 999876 555443 358999999986421 2456778999999999988877652 223
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. +
T Consensus 137 g~Iv~iss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~~ 178 (252)
T PRK06079 137 ASIVTLTYFGSERAI----------P----------------------------NYNVMGIAKAALESSVRYLARDLGKK 178 (252)
T ss_pred ceEEEEeccCccccC----------C----------------------------cchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 578999987542111 0 015799999999888876654 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+.+..+.||.|-.+... .............. .. + ...+...+|+|+++..++..... -..+
T Consensus 179 gI~vn~i~PG~v~T~~~~-------~~~~~~~~~~~~~~-~~---p-----~~r~~~pedva~~~~~l~s~~~~--~itG 240 (252)
T PRK06079 179 GIRVNAISAGAVKTLAVT-------GIKGHKDLLKESDS-RT---V-----DGVGVTIEEVGNTAAFLLSDLST--GVTG 240 (252)
T ss_pred CcEEEEEecCcccccccc-------cCCChHHHHHHHHh-cC---c-----ccCCCCHHHHHHHHHHHhCcccc--cccc
Confidence 899999999988543211 11111122211111 10 1 11256679999999888754321 1245
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.+..+.++
T Consensus 241 ~~i~vdgg 248 (252)
T PRK06079 241 DIIYVDKG 248 (252)
T ss_pred cEEEeCCc
Confidence 55555443
|
|
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=118.15 Aligned_cols=199 Identities=18% Similarity=0.151 Sum_probs=142.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|++||.||||-.|+.|++.++++ +...+||++.|.+.... . ...++..+..|.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~~i~RR~~~d~----------------------a-t~k~v~q~~vDf 71 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVYAILRRELPDP----------------------A-TDKVVAQVEVDF 71 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhc-ccceeEEEEEeccCCCc----------------------c-ccceeeeEEech
Confidence 56789999999999999999999999 67889999999863321 1 445677788888
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEK 259 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~ 259 (614)
+..+ ++..-.+++|+.|-|-|+.+-....+.++++.-.-...+.++|++ +++|.|+.+||+.+..+..
T Consensus 72 ~Kl~------~~a~~~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe-~Gck~fvLvSS~GAd~sSr----- 139 (238)
T KOG4039|consen 72 SKLS------QLATNEQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKE-KGCKTFVLVSSAGADPSSR----- 139 (238)
T ss_pred HHHH------HHHhhhcCCceEEEeecccccccccCceEeechHHHHHHHHHHHh-CCCeEEEEEeccCCCcccc-----
Confidence 8755 677777899999999998775444444555555556778899999 7999999999998755432
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc-ccc
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP-GWT 338 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~-gw~ 338 (614)
-.|-.+|-..|+-+.+..- -.++|+|||.+.|...+..+ +|.
T Consensus 140 -----------------------------------FlY~k~KGEvE~~v~eL~F--~~~~i~RPG~ll~~R~esr~gefl 182 (238)
T KOG4039|consen 140 -----------------------------------FLYMKMKGEVERDVIELDF--KHIIILRPGPLLGERTESRQGEFL 182 (238)
T ss_pred -----------------------------------eeeeeccchhhhhhhhccc--cEEEEecCcceecccccccccchh
Confidence 4788999999988877621 25889999999999876433 333
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
.+. ..+.+ ++.-++.--.||--++.+++..+..
T Consensus 183 g~~----------~~a~l----~~~~~R~~s~pv~~~~~amvn~~~~ 215 (238)
T KOG4039|consen 183 GNL----------TAALL----RSRFQRLLSYPVYGDEVAMVNVLNT 215 (238)
T ss_pred hhe----------ehhhh----hhHHHhccCCchhhhhHhHhhcccc
Confidence 322 11211 2222333345666667777665433
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-11 Score=120.54 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=115.4
Q ss_pred cCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcC-----HHHHHHHHHhChhhHHhhhhccccccCeE
Q psy6053 100 FTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKN-----ARQRIEELFASPLFNLLKSVHGQKIIDKV 172 (614)
Q Consensus 100 ~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-----~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v 172 (614)
+++|+|+|||||| .||.+++++|++.|.+ |++..|...... ..+...+.. +.++ . ...++
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~---vi~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~-~g~~~ 70 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGAD---IFFTYWTAYDKEMPWGVDQDEQIQLQ-----EELL----K-NGVKV 70 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCe---EEEEecccccccccccccHHHHHHHH-----HHHH----h-cCCeE
Confidence 5689999999995 7999999999999876 666544321100 011111110 0111 1 23578
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--
Q psy6053 173 LPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M-- 235 (614)
Q Consensus 173 ~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~-- 235 (614)
.++.+|+++++ +.+.+++ .+|+|||+||.... .+.++..+++|+.|...+.+.+.. +
T Consensus 71 ~~~~~D~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 144 (256)
T PRK12859 71 SSMELDLTQND------APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDK 144 (256)
T ss_pred EEEEcCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 89999999876 5555543 47999999996532 234667799999998887544322 2
Q ss_pred CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--
Q psy6053 236 KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-- 313 (614)
Q Consensus 236 ~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-- 313 (614)
.+-.++|++||..+.... .....|+.||+..+.+.+..+.
T Consensus 145 ~~~g~iv~isS~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~l~~~la~~~ 186 (256)
T PRK12859 145 KSGGRIINMTSGQFQGPM--------------------------------------VGELAYAATKGAIDALTSSLAAEV 186 (256)
T ss_pred cCCeEEEEEcccccCCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHh
Confidence 234589999998653211 0125899999999999877654
Q ss_pred --CCCCEEEeecceeec
Q psy6053 314 --NGMPCLMLRPSIIIP 328 (614)
Q Consensus 314 --~glp~~IvRp~~I~g 328 (614)
+|++++.++||.+-.
T Consensus 187 ~~~~i~v~~v~PG~i~t 203 (256)
T PRK12859 187 AHLGITVNAINPGPTDT 203 (256)
T ss_pred hhhCeEEEEEEEccccC
Confidence 589999999998744
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=125.81 Aligned_cols=169 Identities=16% Similarity=0.151 Sum_probs=116.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|+... +++..+ .+....+ ..++..+.+|+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~---V~~~~r~~~~------~~~~~~-----~~~~~~~---~~~~~~~~~D~ 68 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS---VAICGRDEER------LASAEA-----RLREKFP---GARLLAARCDV 68 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe---EEEEeCCHHH------HHHHHH-----HHHhhCC---CceEEEEEecC
Confidence 56899999999999999999999999876 8888886422 221110 1111111 14788899999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V 242 (614)
++++ +++.++ ..+|++||+||.... .+.+...+++|+.|...+++.+.. + .+..++|
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 142 (265)
T PRK07062 69 LDEA------DVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIV 142 (265)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEE
Confidence 9976 555444 357999999996431 235667788998887766655433 1 2346899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.+|+..+.+.+..+. .|+++
T Consensus 143 ~isS~~~~~~~~--------------------------------------~~~~y~asKaal~~~~~~la~e~~~~gi~v 184 (265)
T PRK07062 143 CVNSLLALQPEP--------------------------------------HMVATSAARAGLLNLVKSLATELAPKGVRV 184 (265)
T ss_pred EeccccccCCCC--------------------------------------CchHhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 999986532110 014688899877766655433 58999
Q ss_pred EEeecceeecc
Q psy6053 319 LMLRPSIIIPV 329 (614)
Q Consensus 319 ~IvRp~~I~g~ 329 (614)
+.++||.|-.+
T Consensus 185 ~~i~PG~v~t~ 195 (265)
T PRK07062 185 NSILLGLVESG 195 (265)
T ss_pred EEEecCccccc
Confidence 99999988543
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=128.34 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=113.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||+||+.++++|+++|++ |+++.|... ++++++.+ . ...++.++.+|++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~---V~~~~r~~~-----~~~~~~~~------------~-~~~~~~~~~~D~~~~ 60 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTH---VISISRTEN-----KELTKLAE------------Q-YNSNLTFHSLDLQDV 60 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCE---EEEEeCCch-----HHHHHHHh------------c-cCCceEEEEecCCCH
Confidence 68999999999999999999999876 888888642 22332211 0 224688899999987
Q ss_pred CCCCCHHHHHHHhccc-----------cEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHH----cCCCc
Q psy6053 183 ELAIKESDRQLLASEV-----------DIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKE----MKHLE 239 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~v-----------d~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~----~~~~k 239 (614)
+ +++.+++++ .++||+||.... .+.+...+++|+.|+..+++.+.. .+..+
T Consensus 61 ~------~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 134 (251)
T PRK06924 61 H------ELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDK 134 (251)
T ss_pred H------HHHHHHHHHHHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCc
Confidence 6 666655432 178999986432 245667788999997766655543 12346
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------ 313 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------ 313 (614)
++|++||..+.... | ....|+.+|+..|.+++..+.
T Consensus 135 ~iv~~sS~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~~ 176 (251)
T PRK06924 135 RVINISSGAAKNPY----------F----------------------------GWSAYCSSKAGLDMFTQTVATEQEEEE 176 (251)
T ss_pred eEEEecchhhcCCC----------C----------------------------CcHHHhHHHHHHHHHHHHHHHHhhhcC
Confidence 89999997652111 0 015799999999999876653
Q ss_pred CCCCEEEeecceeec
Q psy6053 314 NGMPCLMLRPSIIIP 328 (614)
Q Consensus 314 ~glp~~IvRp~~I~g 328 (614)
.++.+..++||.+-.
T Consensus 177 ~~i~v~~v~Pg~v~t 191 (251)
T PRK06924 177 YPVKIVAFSPGVMDT 191 (251)
T ss_pred CCeEEEEecCCcccc
Confidence 368899999997744
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-11 Score=121.68 Aligned_cols=230 Identities=16% Similarity=0.115 Sum_probs=141.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|.+|..+++.|++.|.+ |+++.|.... .+++.+. +... ...++.++.+|+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~---V~~~~r~~~~---~~~~~~~--------l~~~----~~~~~~~~~~D~ 66 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCH---LHLVARDADA---LEALAAD--------LRAA----HGVDVAVHALDL 66 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE---EEEEeCCHHH---HHHHHHH--------HHhh----cCCceEEEEecC
Confidence 46799999999999999999999999865 8888886421 1111111 1110 224688899999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V~vST 246 (614)
++++ ++..+++ .+|++||+|+.... .+.++..+++|+.|...+++.+.. + .+-.++|++||
T Consensus 67 ~~~~------~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss 140 (259)
T PRK06125 67 SSPE------AREQLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIG 140 (259)
T ss_pred CCHH------HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 9866 5555554 68999999986431 245677899999999988887632 1 22357999988
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
....... + ....|+.+|...+.+++.... .|+++..+.
T Consensus 141 ~~~~~~~----------~----------------------------~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~ 182 (259)
T PRK06125 141 AAGENPD----------A----------------------------DYICGSAGNAALMAFTRALGGKSLDDGVRVVGVN 182 (259)
T ss_pred ccccCCC----------C----------------------------CchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEe
Confidence 7542110 0 014688999998888876643 589999999
Q ss_pred cceeecccCCCC-ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 323 PSIIIPVWREPL-PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 323 p~~I~g~~~~p~-~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
||.+-.+..... +.......+........... . + .-.+.+.+|+|++++.++..... ...+.++.+.+
T Consensus 183 PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~--~~~~~~~~~va~~~~~l~~~~~~--~~~G~~i~vdg 251 (259)
T PRK06125 183 PGPVATDRMLTLLKGRARAELGDESRWQELLAG----L---P--LGRPATPEEVADLVAFLASPRSG--YTSGTVVTVDG 251 (259)
T ss_pred cCccccHHHHHHHHhhhhcccCCHHHHHHHhcc----C---C--cCCCcCHHHHHHHHHHHcCchhc--cccCceEEecC
Confidence 998755421000 00000000000011111110 0 0 11256789999998888753321 12566776665
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
+
T Consensus 252 g 252 (259)
T PRK06125 252 G 252 (259)
T ss_pred C
Confidence 4
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=123.11 Aligned_cols=168 Identities=21% Similarity=0.313 Sum_probs=118.6
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+...||.|+|||||..||.+++.+|.+.|.. ++.++|.... .+|+.+ .+++..+. +++.++++
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~---l~lvar~~rr---l~~v~~--------~l~~~~~~---~~v~~~~~ 70 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGAK---LVLVARRARR---LERVAE--------ELRKLGSL---EKVLVLQL 70 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCc---eEEeehhhhh---HHHHHH--------HHHHhCCc---CccEEEeC
Confidence 3467899999999999999999999999876 6777776543 344421 12222332 27999999
Q ss_pred CCCCCCCCCCHHHHHHH-------hccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 178 DAEADELAIKESDRQLL-------ASEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l-------~~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
|+++.+ +.+.. +.++|+.||+||.... .+..+..+++|+.|+..+.+++..+ .+-.+
T Consensus 71 Dvs~~~------~~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~Gh 144 (282)
T KOG1205|consen 71 DVSDEE------SVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGH 144 (282)
T ss_pred ccCCHH------HHHHHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCe
Confidence 999976 55533 3579999999998642 2456678999999998888877642 13358
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCE
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPC 318 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~ 318 (614)
+|.+||..+.-.. |. ...|+.||++-+.+....+. .+...
T Consensus 145 IVvisSiaG~~~~----------P~----------------------------~~~Y~ASK~Al~~f~etLR~El~~~~~ 186 (282)
T KOG1205|consen 145 IVVISSIAGKMPL----------PF----------------------------RSIYSASKHALEGFFETLRQELIPLGT 186 (282)
T ss_pred EEEEeccccccCC----------Cc----------------------------ccccchHHHHHHHHHHHHHHHhhccCc
Confidence 9999999764321 11 14799999999888877666 23222
Q ss_pred --E-Eeeccee
Q psy6053 319 --L-MLRPSII 326 (614)
Q Consensus 319 --~-IvRp~~I 326 (614)
. ++-||.|
T Consensus 187 ~i~i~V~PG~V 197 (282)
T KOG1205|consen 187 IIIILVSPGPI 197 (282)
T ss_pred eEEEEEecCce
Confidence 2 3556655
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=123.45 Aligned_cols=224 Identities=14% Similarity=0.100 Sum_probs=141.9
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.++|+++||||+ +-||+.++++|++.|.+ |++..|+......+++++++.+ ...++.++.+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~---v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 66 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAE---LGITYLPDEKGRFEKKVRELTE--------------PLNPSLFLPC 66 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCE---EEEEecCcccchHHHHHHHHHh--------------ccCcceEeec
Confidence 468999999986 79999999999999876 6666665432222334443311 1124668899
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------h----hHHHHHHHHHhHHHHHHHHHHHHH-cCCC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIR-------F----DEALKKAVLLNTRGTKMMLSLAKE-MKHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~ 238 (614)
|+++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+..+.+.+.. +..-
T Consensus 67 Dl~d~~------~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~ 140 (258)
T PRK07370 67 DVQDDA------QIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG 140 (258)
T ss_pred CcCCHH------HHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC
Confidence 999976 5554443 5899999999642 2 245677899999999988887654 2222
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. +
T Consensus 141 g~Iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~~ 182 (258)
T PRK07370 141 GSIVTLTYLGGVRAI----------P----------------------------NYNVMGVAKAALEASVRYLAAELGPK 182 (258)
T ss_pred CeEEEEeccccccCC----------c----------------------------ccchhhHHHHHHHHHHHHHHHHhCcC
Confidence 589999997643211 0 015799999999888877654 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+.+..+.||.|-.+...... +........... .....+...+|+++++..++..... ...+
T Consensus 183 gI~Vn~i~PG~v~T~~~~~~~-------~~~~~~~~~~~~---------~p~~r~~~~~dva~~~~fl~s~~~~--~~tG 244 (258)
T PRK07370 183 NIRVNAISAGPIRTLASSAVG-------GILDMIHHVEEK---------APLRRTVTQTEVGNTAAFLLSDLAS--GITG 244 (258)
T ss_pred CeEEEEEecCcccCchhhccc-------cchhhhhhhhhc---------CCcCcCCCHHHHHHHHHHHhChhhc--cccC
Confidence 899999999988554211110 100111111110 0011245569999999888754331 1245
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++.+.++
T Consensus 245 ~~i~vdgg 252 (258)
T PRK07370 245 QTIYVDAG 252 (258)
T ss_pred cEEEECCc
Confidence 56655443
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=128.33 Aligned_cols=107 Identities=24% Similarity=0.262 Sum_probs=81.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||||+||++++++|++.|.+ |+++.|.+. ++++... . ...++..+.+|+
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~---Vi~l~r~~~------~l~~~~~------------~-~~~~v~~v~~Dv 233 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAK---VVALTSNSD------KITLEIN------------G-EDLPVKTLHWQV 233 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHh------------h-cCCCeEEEEeeC
Confidence 46899999999999999999999999875 788887542 2221110 0 112467889999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccCh----hHHHHHHHHHhHHHHHHHHHHHHH
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRF----DEALKKAVLLNTRGTKMMLSLAKE 234 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~ 234 (614)
++++ ++.+.++++|++||+||.... .+.++..+++|+.|+.++++++..
T Consensus 234 sd~~------~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp 286 (406)
T PRK07424 234 GQEA------ALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFT 286 (406)
T ss_pred CCHH------HHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9865 777888899999999986422 245677899999999999998754
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=135.57 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=117.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
..++++++||||+|+||..+++.|.+.|.+ |+++.|+... +.++++.+ . -+...+.+|
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~---vi~~~~~~~~----~~l~~~~~--------------~-~~~~~~~~D 264 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAH---VVCLDVPAAG----EALAAVAN--------------R-VGGTALALD 264 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCE---EEEEeCCccH----HHHHHHHH--------------H-cCCeEEEEe
Confidence 456899999999999999999999999865 7888875432 22322211 0 123567889
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +.+.+++ ++|+|||+|+.... .+.++..+++|+.|+.++.+.+... ..-.+|
T Consensus 265 v~~~~------~~~~~~~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~i 338 (450)
T PRK08261 265 ITAPD------APARIAEHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRI 338 (450)
T ss_pred CCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEE
Confidence 99865 5555443 58999999996532 3557778999999999999998762 122689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.+|...+.+++.... .|++
T Consensus 339 v~~SS~~~~~g~~--------------------------------------~~~~Y~asKaal~~~~~~la~el~~~gi~ 380 (450)
T PRK08261 339 VGVSSISGIAGNR--------------------------------------GQTNYAASKAGVIGLVQALAPLLAERGIT 380 (450)
T ss_pred EEECChhhcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHHhhhCcE
Confidence 9999986532110 015799999976666655443 5899
Q ss_pred EEEeecceee
Q psy6053 318 CLMLRPSIII 327 (614)
Q Consensus 318 ~~IvRp~~I~ 327 (614)
+..+.||.|-
T Consensus 381 v~~v~PG~i~ 390 (450)
T PRK08261 381 INAVAPGFIE 390 (450)
T ss_pred EEEEEeCcCc
Confidence 9999999874
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=122.70 Aligned_cols=153 Identities=10% Similarity=0.094 Sum_probs=112.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+++||||+|.+|+++++.|++.|++ |+++.|.. +++++..+ . .++.++.+|++++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~---v~~~~r~~------~~~~~~~~--------------~-~~~~~~~~D~~~~ 56 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHK---VTLVGARR------DDLEVAAK--------------E-LDVDAIVCDNTDP 56 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH--------------h-ccCcEEecCCCCH
Confidence 47999999999999999999999876 78888863 23332211 0 1356788999986
Q ss_pred CCCCCHHHHHHHhc----cccEEEEccccc---------Ch---hHHHHHHHHHhHHHHHHHHHHHHH-cCCCceEEEEe
Q psy6053 183 ELAIKESDRQLLAS----EVDIMIHGAATI---------RF---DEALKKAVLLNTRGTKMMLSLAKE-MKHLELFVHIS 245 (614)
Q Consensus 183 ~lGLs~~~~~~l~~----~vd~ViH~AA~v---------~~---~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~V~vS 245 (614)
+ +++.+++ .+|++||+|+.. .+ .+.++..+++|+.|+.++++.+.. +..-.++|++|
T Consensus 57 ~------~v~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~is 130 (223)
T PRK05884 57 A------SLEEARGLFPHHLDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVV 130 (223)
T ss_pred H------HHHHHHHHHhhcCcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 5 5665554 589999998741 11 345778899999999999988765 22225899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|... . + ...|+.||+.-+.+.+..+. +|+.+..+
T Consensus 131 S~~~--~-----------~-----------------------------~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v 168 (223)
T PRK05884 131 PENP--P-----------A-----------------------------GSAEAAIKAALSNWTAGQAAVFGTRGITINAV 168 (223)
T ss_pred cCCC--C-----------C-----------------------------ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 8641 0 0 15799999998888876655 58999999
Q ss_pred ecceee
Q psy6053 322 RPSIII 327 (614)
Q Consensus 322 Rp~~I~ 327 (614)
.||.+.
T Consensus 169 ~PG~v~ 174 (223)
T PRK05884 169 ACGRSV 174 (223)
T ss_pred ecCccC
Confidence 998773
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=124.32 Aligned_cols=246 Identities=14% Similarity=0.059 Sum_probs=141.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+++|||| |+||+++++.|. .|.+ |+++.|... ++++..+ .++ . ...++.++.+|+++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~---Vv~~~r~~~------~~~~~~~-----~l~----~-~~~~~~~~~~Dv~d 60 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKK---VLLADYNEE------NLEAAAK-----TLR----E-AGFDVSTQEVDVSS 60 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCE---EEEEeCCHH------HHHHHHH-----HHH----h-cCCeEEEEEeecCC
Confidence 578999998 689999999996 6755 888888642 1221110 111 0 22468889999998
Q ss_pred CCCCCCHHHHHHHhc------cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCceeccCCc
Q psy6053 182 DELAIKESDRQLLAS------EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHISTAYCHLQEK 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~~~~~~~~ 254 (614)
++ +++.+++ .+|++||+||.......++..+++|+.|+.++++.+... ..-.+.|++||..+.....
T Consensus 61 ~~------~i~~~~~~~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~ 134 (275)
T PRK06940 61 RE------SVKALAATAQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPA 134 (275)
T ss_pred HH------HHHHHHHHHHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcc
Confidence 76 5555543 589999999976555678889999999999999988652 1124567788775432110
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhh---hhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecceee
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRA---KEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIII 327 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~---p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~ 327 (614)
...+.. +. ....+.+.+.... +.........|+.||+..+.+.+..+. +|+.+..+.||.|-
T Consensus 135 ~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~ 203 (275)
T PRK06940 135 LTAEQE---RA--------LATTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIIS 203 (275)
T ss_pred cchhhh---cc--------ccccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCc
Confidence 000000 00 0000000000000 000001125799999998888775543 68999999999885
Q ss_pred cccCCCCccccCCCCchH-HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 328 PVWREPLPGWTDNINGPT-GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 328 g~~~~p~~gw~d~~~g~~-~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.+.... .+ .... .....+.. . .+ ..-+...+|+|+++..++..... -..+.++.+.++
T Consensus 204 T~~~~~--~~----~~~~~~~~~~~~~-~---~p-----~~r~~~peeia~~~~fL~s~~~~--~itG~~i~vdgg 262 (275)
T PRK06940 204 TPLAQD--EL----NGPRGDGYRNMFA-K---SP-----AGRPGTPDEIAALAEFLMGPRGS--FITGSDFLVDGG 262 (275)
T ss_pred Cccchh--hh----cCCchHHHHHHhh-h---CC-----cccCCCHHHHHHHHHHHcCcccC--cccCceEEEcCC
Confidence 542110 00 0000 11111111 0 00 11256779999998887753321 125666766655
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-11 Score=118.06 Aligned_cols=107 Identities=24% Similarity=0.235 Sum_probs=80.8
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+-+++|+++||||||+||++++++|++.|.+ |+++.|.+.. +.+.. .......+.+
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~---Vi~~~r~~~~-----~~~~~----------------~~~~~~~~~~ 65 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAK---VIGLTHSKIN-----NSESN----------------DESPNEWIKW 65 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCE---EEEEECCchh-----hhhhh----------------ccCCCeEEEe
Confidence 3457899999999999999999999999876 8888886521 11110 0011256789
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccCh----hHHHHHHHHHhHHHHHHHHHHHHH
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRF----DEALKKAVLLNTRGTKMMLSLAKE 234 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~ 234 (614)
|+++.+ ++...+.++|++||+||.... .+.+...+++|+.|+.++++.+..
T Consensus 66 D~~~~~------~~~~~~~~iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 120 (245)
T PRK12367 66 ECGKEE------SLDKQLASLDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFED 120 (245)
T ss_pred eCCCHH------HHHHhcCCCCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 998865 677777889999999986422 356778899999999999998765
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.5e-11 Score=118.86 Aligned_cols=168 Identities=15% Similarity=0.099 Sum_probs=118.6
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+++||||+ +-||+.++++|++.|.+ |++..|..+. .++++++.+. . ...++.++.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~---v~~~~r~~~~---~~~~~~~~~~---------~---~~~~~~~~~~ 66 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAK---LVFTYAGERL---EKEVRELADT---------L---EGQESLLLPC 66 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE---EEEecCcccc---hHHHHHHHHH---------c---CCCceEEEec
Confidence 468999999997 89999999999999876 7777775332 2344433211 0 1246788999
Q ss_pred CCCCCCCCCCHHHHHHHh-------ccccEEEEcccccC-------h----hHHHHHHHHHhHHHHHHHHHHHHH-cCCC
Q psy6053 178 DAEADELAIKESDRQLLA-------SEVDIMIHGAATIR-------F----DEALKKAVLLNTRGTKMMLSLAKE-MKHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~ 238 (614)
|+++++ +.+.++ ..+|++||+|+... + .+.+...+++|+.++..+.+.+.. +..-
T Consensus 67 Dv~d~~------~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 140 (257)
T PRK08594 67 DVTSDE------EITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEG 140 (257)
T ss_pred CCCCHH------HHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccC
Confidence 999876 555444 35899999998642 1 134556789999999888877664 2222
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. +
T Consensus 141 g~Iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~~ 182 (257)
T PRK08594 141 GSIVTLTYLGGERVV----------Q----------------------------NYNVMGVAKASLEASVKYLANDLGKD 182 (257)
T ss_pred ceEEEEcccCCccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhhhc
Confidence 579999998653210 0 014799999999888876654 5
Q ss_pred CCCEEEeecceeecc
Q psy6053 315 GMPCLMLRPSIIIPV 329 (614)
Q Consensus 315 glp~~IvRp~~I~g~ 329 (614)
|+.+..+.||.|-.+
T Consensus 183 gIrvn~v~PG~v~T~ 197 (257)
T PRK08594 183 GIRVNAISAGPIRTL 197 (257)
T ss_pred CCEEeeeecCcccCH
Confidence 899999999988544
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=121.69 Aligned_cols=221 Identities=13% Similarity=0.085 Sum_probs=140.3
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+++||||+ +-||..+++.|++.|.+ |++..|... ..++++++.+ + ...+ .++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~---Vil~~r~~~---~~~~~~~~~~---------~----~~~~-~~~~~ 62 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAE---LAFTYLNEA---LKKRVEPIAQ---------E----LGSD-YVYEL 62 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCE---EEEEecCHH---HHHHHHHHHH---------h----cCCc-eEEEe
Confidence 358999999997 78999999999999876 777777632 2344444321 1 1122 56889
Q ss_pred CCCCCCCCCCHHHHHHHh-------ccccEEEEcccccC-------h----hHHHHHHHHHhHHHHHHHHHHHHH-cCCC
Q psy6053 178 DAEADELAIKESDRQLLA-------SEVDIMIHGAATIR-------F----DEALKKAVLLNTRGTKMMLSLAKE-MKHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~ 238 (614)
|+++++ +++.++ .++|++||+||... + .+.++..+++|+.|+..+.+.+.. +..-
T Consensus 63 Dv~d~~------~v~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~ 136 (274)
T PRK08415 63 DVSKPE------HFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG 136 (274)
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC
Confidence 999976 555444 35799999999642 1 245677899999999998887765 2222
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. +
T Consensus 137 g~Iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~~ 178 (274)
T PRK08415 137 ASVLTLSYLGGVKYV----------P----------------------------HYNVMGVAKAALESSVRYLAVDLGKK 178 (274)
T ss_pred CcEEEEecCCCccCC----------C----------------------------cchhhhhHHHHHHHHHHHHHHHhhhc
Confidence 589999987542211 0 014799999988888777654 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+.+..+.||.|-.+..... ............. .+ ..-+...+|+|++++.++..... -..+
T Consensus 179 gIrVn~v~PG~v~T~~~~~~--------~~~~~~~~~~~~~---~p-----l~r~~~pedva~~v~fL~s~~~~--~itG 240 (274)
T PRK08415 179 GIRVNAISAGPIKTLAASGI--------GDFRMILKWNEIN---AP-----LKKNVSIEEVGNSGMYLLSDLSS--GVTG 240 (274)
T ss_pred CeEEEEEecCccccHHHhcc--------chhhHHhhhhhhh---Cc-----hhccCCHHHHHHHHHHHhhhhhh--cccc
Confidence 89999999998854321100 0000000000000 00 01135679999999888765332 1255
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.++.+.++
T Consensus 241 ~~i~vdGG 248 (274)
T PRK08415 241 EIHYVDAG 248 (274)
T ss_pred cEEEEcCc
Confidence 66666554
|
|
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=115.18 Aligned_cols=251 Identities=17% Similarity=0.108 Sum_probs=165.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
-+..+||||||-|-+|..++.-|..+ +.-..|++-+--|...+ ..+.--++-.|+
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~-yGs~~VILSDI~KPp~~------------------------V~~~GPyIy~DI 96 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYM-YGSECVILSDIVKPPAN------------------------VTDVGPYIYLDI 96 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHH-hCCccEehhhccCCchh------------------------hcccCCchhhhh
Confidence 44568999999999999988765443 44334554333332221 112234567788
Q ss_pred CCCCCCCCHHHHHHHh--ccccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcc
Q psy6053 180 EADELAIKESDRQLLA--SEVDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKV 255 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~--~~vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~ 255 (614)
.+.. .++++. ..+|-.||..|..+.. .+..-+.++|+.|..|+++.|++. +++-| .-||..++++..+
T Consensus 97 LD~K------~L~eIVVn~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~-kL~iF-VPSTIGAFGPtSP 168 (366)
T KOG2774|consen 97 LDQK------SLEEIVVNKRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKH-KLKVF-VPSTIGAFGPTSP 168 (366)
T ss_pred hccc------cHHHhhcccccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHc-CeeEe-ecccccccCCCCC
Confidence 7755 455554 3689999988865422 222346789999999999999995 77644 3678888776543
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhh-cCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEF-LGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~-~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
-.. ||.+ +......||-||.-||-+-..+.. .|+....+|.+.+++... |
T Consensus 169 RNP---------------------------TPdltIQRPRTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~-p 220 (366)
T KOG2774|consen 169 RNP---------------------------TPDLTIQRPRTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATK-P 220 (366)
T ss_pred CCC---------------------------CCCeeeecCceeechhHHHHHHHHHHHHhhcCccceecccCcccccCC-C
Confidence 211 1222 112236799999999988777666 699999999777766543 2
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
-.|-.| |...-+..+.-+|.-. -+-.++.+..+.+..||-.+++..+..+.+ +-..++||++.- ..|-.|+.
T Consensus 221 gggttd--ya~A~f~~Al~~gk~t-Cylrpdtrlpmmy~~dc~~~~~~~~~a~~~--~lkrr~ynvt~~---sftpee~~ 292 (366)
T KOG2774|consen 221 GGGTTD--YAIAIFYDALQKGKHT-CYLRPDTRLPMMYDTDCMASVIQLLAADSQ--SLKRRTYNVTGF---SFTPEEIA 292 (366)
T ss_pred CCCcch--hHHHHHHHHHHcCCcc-cccCCCccCceeehHHHHHHHHHHHhCCHH--Hhhhheeeecee---ccCHHHHH
Confidence 222222 2222233344455433 355788999999999999999988776543 235679999875 58889999
Q ss_pred HHHhhh
Q psy6053 414 DIGKSI 419 (614)
Q Consensus 414 ~~~~~~ 419 (614)
+.+.+.
T Consensus 293 ~~~~~~ 298 (366)
T KOG2774|consen 293 DAIRRV 298 (366)
T ss_pred HHHHhh
Confidence 888876
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.4e-11 Score=119.25 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=140.3
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+++||||+ +-||+.++++|++.|.+ |++..|..+. .+.++++.+ ....+.++.+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~---v~l~~r~~~~---~~~~~~~~~--------------~~~~~~~~~~ 67 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAE---LAVTYLNDKA---RPYVEPLAE--------------ELDAPIFLPL 67 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCE---EEEEeCChhh---HHHHHHHHH--------------hhccceEEec
Confidence 568999999998 48999999999999876 7777786432 223333211 1123457899
Q ss_pred CCCCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHH-cCCC
Q psy6053 178 DAEADELAIKESDRQLLA-------SEVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKE-MKHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~ 238 (614)
|+++++ +.++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. +.+-
T Consensus 68 D~~~~~------~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~ 141 (258)
T PRK07533 68 DVREPG------QLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNG 141 (258)
T ss_pred CcCCHH------HHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccC
Confidence 999876 555544 357999999986421 245677899999999999987754 2222
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. +
T Consensus 142 g~Ii~iss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~~ 183 (258)
T PRK07533 142 GSLLTMSYYGAEKVV----------E----------------------------NYNLMGPVKAALESSVRYLAAELGPK 183 (258)
T ss_pred CEEEEEeccccccCC----------c----------------------------cchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 478999987542110 0 015799999988888776554 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+.+..+.||.|-.+..+ ++ .............. + ...+...+|+|++++.++..... -..+
T Consensus 184 gI~Vn~v~PG~v~T~~~~---~~----~~~~~~~~~~~~~~-------p--~~r~~~p~dva~~~~~L~s~~~~--~itG 245 (258)
T PRK07533 184 GIRVHAISPGPLKTRAAS---GI----DDFDALLEDAAERA-------P--LRRLVDIDDVGAVAAFLASDAAR--RLTG 245 (258)
T ss_pred CcEEEEEecCCcCChhhh---cc----CCcHHHHHHHHhcC-------C--cCCCCCHHHHHHHHHHHhChhhc--cccC
Confidence 899999999988543211 10 00011111111100 0 11245678999999888754321 1245
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.++.+.++
T Consensus 246 ~~i~vdgg 253 (258)
T PRK07533 246 NTLYIDGG 253 (258)
T ss_pred cEEeeCCc
Confidence 56655443
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=120.80 Aligned_cols=223 Identities=9% Similarity=0.055 Sum_probs=143.0
Q ss_pred cccCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 98 ETFTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 98 ~~~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
..+++|+++||||+ +-||..++++|++.|.+ |++..|... ..++++++.+. ......+
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~---V~l~~r~~~---~~~~~~~l~~~--------------~~~~~~~ 65 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAE---LAFTYQGDA---LKKRVEPLAAE--------------LGAFVAG 65 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCE---EEEEcCchH---HHHHHHHHHHh--------------cCCceEE
Confidence 45678999999997 79999999999999876 666666421 23445443221 1234568
Q ss_pred eCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHH-cC
Q psy6053 176 SGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKE-MK 236 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~-~~ 236 (614)
.+|+++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|+..+++.+.. +.
T Consensus 66 ~~Dl~~~~------~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~ 139 (272)
T PRK08159 66 HCDVTDEA------SIDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMT 139 (272)
T ss_pred ecCCCCHH------HHHHHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 99999876 5555543 58999999986421 245677899999999999988765 22
Q ss_pred CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---
Q psy6053 237 HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--- 313 (614)
Q Consensus 237 ~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--- 313 (614)
+-.++|++||..+... .| ....|+.||+..+.+.+..+.
T Consensus 140 ~~g~Iv~iss~~~~~~----------~p----------------------------~~~~Y~asKaal~~l~~~la~el~ 181 (272)
T PRK08159 140 DGGSILTLTYYGAEKV----------MP----------------------------HYNVMGVAKAALEASVKYLAVDLG 181 (272)
T ss_pred CCceEEEEeccccccC----------CC----------------------------cchhhhhHHHHHHHHHHHHHHHhc
Confidence 3358899998643211 00 015799999998888776654
Q ss_pred -CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
+|+.+..+.||.|-.......+ . .. .......... +. --+...+|+|++++.++..... ..
T Consensus 182 ~~gIrVn~v~PG~v~T~~~~~~~----~---~~-~~~~~~~~~~------p~--~r~~~peevA~~~~~L~s~~~~--~i 243 (272)
T PRK08159 182 PKNIRVNAISAGPIKTLAASGIG----D---FR-YILKWNEYNA------PL--RRTVTIEEVGDSALYLLSDLSR--GV 243 (272)
T ss_pred ccCeEEEEeecCCcCCHHHhcCC----c---ch-HHHHHHHhCC------cc--cccCCHHHHHHHHHHHhCcccc--Cc
Confidence 6899999999988543211100 0 00 0001101000 00 1245679999999888754321 12
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.+.++.+.++
T Consensus 244 tG~~i~vdgG 253 (272)
T PRK08159 244 TGEVHHVDSG 253 (272)
T ss_pred cceEEEECCC
Confidence 5667766665
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-11 Score=120.04 Aligned_cols=222 Identities=15% Similarity=0.116 Sum_probs=138.8
Q ss_pred ccCCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGA--SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGa--TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.+++|+++|||| ++.||+.++++|++.|.+ |++..|..+ ..++++++.. .......+.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~---v~~~~~~~~---~~~~~~~~~~--------------~~~~~~~~~ 62 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAE---LAFTYVVDK---LEERVRKMAA--------------ELDSELVFR 62 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCE---EEEEcCcHH---HHHHHHHHHh--------------ccCCceEEE
Confidence 367899999997 679999999999999876 666656421 2333443321 112245789
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------h----HHHHHHHHHhHHHHHHHHHHHHHc--
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------D----EALKKAVLLNTRGTKMMLSLAKEM-- 235 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~----~~~~~~~~~Nv~gt~~ll~la~~~-- 235 (614)
+|+++++ +.+.+++ ++|++||+||.... . +.++..+++|+.|+..+.+.+..+
T Consensus 63 ~Dv~~~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~ 136 (261)
T PRK08690 63 CDVASDD------EINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMR 136 (261)
T ss_pred CCCCCHH------HHHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhh
Confidence 9999876 6665543 58999999997531 1 245567889999988887765442
Q ss_pred CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--
Q psy6053 236 KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-- 313 (614)
Q Consensus 236 ~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-- 313 (614)
.+-.++|++||..+.... | .-..|+.||+..+.+.+..+.
T Consensus 137 ~~~g~Iv~iss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~e~ 178 (261)
T PRK08690 137 GRNSAIVALSYLGAVRAI----------P----------------------------NYNVMGMAKASLEAGIRFTAACL 178 (261)
T ss_pred hcCcEEEEEcccccccCC----------C----------------------------CcccchhHHHHHHHHHHHHHHHh
Confidence 122578999987643211 0 015799999998888776543
Q ss_pred --CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC
Q psy6053 314 --NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391 (614)
Q Consensus 314 --~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~ 391 (614)
+|+.+..+.||.|-.+... ++ ...........+ .. + ...+...+|+|+++..++..... -
T Consensus 179 ~~~gIrVn~i~PG~v~T~~~~---~~----~~~~~~~~~~~~-~~------p--~~r~~~peevA~~v~~l~s~~~~--~ 240 (261)
T PRK08690 179 GKEGIRCNGISAGPIKTLAAS---GI----ADFGKLLGHVAA-HN------P--LRRNVTIEEVGNTAAFLLSDLSS--G 240 (261)
T ss_pred hhcCeEEEEEecCcccchhhh---cC----CchHHHHHHHhh-cC------C--CCCCCCHHHHHHHHHHHhCcccC--C
Confidence 6899999999988543211 11 011111111111 10 0 11255679999999988864321 1
Q ss_pred CCccEEEeccC
Q psy6053 392 HRQSIVHLTSS 402 (614)
Q Consensus 392 ~~~~vyni~~~ 402 (614)
..+.++-+.++
T Consensus 241 ~tG~~i~vdgG 251 (261)
T PRK08690 241 ITGEITYVDGG 251 (261)
T ss_pred cceeEEEEcCC
Confidence 24556655444
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-11 Score=121.07 Aligned_cols=166 Identities=11% Similarity=0.149 Sum_probs=116.7
Q ss_pred cCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+++||||++ .||+.++++|++.|.+ |++..|... ..++++++.+. . .....+.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~---V~~~~r~~~---~~~~~~~~~~~-------------~-g~~~~~~~ 64 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAE---LAFTYQGEA---LGKRVKPLAES-------------L-GSDFVLPC 64 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCE---EEEecCchH---HHHHHHHHHHh-------------c-CCceEEeC
Confidence 4689999999996 8999999999999976 666667531 22333333110 1 12246899
Q ss_pred CCCCCCCCCCHHHHHHHh-------ccccEEEEcccccC-------h----hHHHHHHHHHhHHHHHHHHHHHHH-cCCC
Q psy6053 178 DAEADELAIKESDRQLLA-------SEVDIMIHGAATIR-------F----DEALKKAVLLNTRGTKMMLSLAKE-MKHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~ 238 (614)
|+++++ +++.++ ..+|++||+||... + .+.++..+++|+.|+.++++.+.. +.+-
T Consensus 65 Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~ 138 (271)
T PRK06505 65 DVEDIA------SVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDG 138 (271)
T ss_pred CCCCHH------HHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccC
Confidence 999876 555544 35899999999642 1 245677889999999998887654 2222
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. +
T Consensus 139 G~Iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaAl~~l~r~la~el~~~ 180 (271)
T PRK06505 139 GSMLTLTYGGSTRVM----------P----------------------------NYNVMGVAKAALEASVRYLAADYGPQ 180 (271)
T ss_pred ceEEEEcCCCccccC----------C----------------------------ccchhhhhHHHHHHHHHHHHHHHhhc
Confidence 579999987542110 0 015799999998888776554 6
Q ss_pred CCCEEEeecceeecc
Q psy6053 315 GMPCLMLRPSIIIPV 329 (614)
Q Consensus 315 glp~~IvRp~~I~g~ 329 (614)
|+.+..+.||.|-.+
T Consensus 181 gIrVn~v~PG~i~T~ 195 (271)
T PRK06505 181 GIRVNAISAGPVRTL 195 (271)
T ss_pred CeEEEEEecCCcccc
Confidence 899999999988554
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-11 Score=119.96 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=110.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||+|.||+.++++|++.|+. |+++.|+.. ++++..+ .++ ...++.++.+|++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~------~~~~~~~~~~Dv~d~ 60 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGAR---VVISSRNEE------NLEKALK-----ELK------EYGEVYAVKADLSDK 60 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCE---EEEEeCCHH------HHHHHHH-----HHH------hcCCceEEEcCCCCH
Confidence 58999999999999999999999875 888888642 2221111 111 113578899999986
Q ss_pred CCCCCHHHHHHHh-------ccccEEEEcccccC-----h----hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEE
Q psy6053 183 ELAIKESDRQLLA-------SEVDIMIHGAATIR-----F----DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFV 242 (614)
Q Consensus 183 ~lGLs~~~~~~l~-------~~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V 242 (614)
+ +++.++ .++|++||+||... + .+.+.....+|+.++..+...+ .+..+..++|
T Consensus 61 ~------~~~~~~~~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv 134 (259)
T PRK08340 61 D------DLKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLV 134 (259)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEE
Confidence 5 555554 36899999999642 1 1334456778888766554433 2112346899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..+.+.+..+. .|+.+
T Consensus 135 ~isS~~~~~~~----------~----------------------------~~~~y~~sKaa~~~~~~~la~e~~~~gI~v 176 (259)
T PRK08340 135 YLSSVSVKEPM----------P----------------------------PLVLADVTRAGLVQLAKGVSRTYGGKGIRA 176 (259)
T ss_pred EEeCcccCCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 99998653211 0 014799999988888877665 57889
Q ss_pred EEeecceeec
Q psy6053 319 LMLRPSIIIP 328 (614)
Q Consensus 319 ~IvRp~~I~g 328 (614)
..+.||.|-.
T Consensus 177 ~~v~pG~v~t 186 (259)
T PRK08340 177 YTVLLGSFDT 186 (259)
T ss_pred EEeccCcccC
Confidence 8999987743
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.5e-11 Score=119.21 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=139.7
Q ss_pred cCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+++||||++ -||+.+++.|++.|.+ |++..|..+ .++.++++.. ...++.++.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~---vil~~r~~~---~~~~~~~~~~--------------~~~~~~~~~~ 63 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAE---LAFTYQNDK---LKGRVEEFAA--------------QLGSDIVLPC 63 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCE---EEEEecchh---HHHHHHHHHh--------------ccCCceEeec
Confidence 5789999999985 8999999999999976 666666521 2233333311 1124567899
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------------hHHHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF------------DEALKKAVLLNTRGTKMMLSLAKEM-KH 237 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~-~~ 237 (614)
|+++++ +++.+++ .+|++||+||.... .+.++..+++|+.|...+.+.+..+ ..
T Consensus 64 Dl~~~~------~v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 137 (262)
T PRK07984 64 DVAEDA------SIDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP 137 (262)
T ss_pred CCCCHH------HHHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence 999876 6665553 47999999985321 2355677899999988888877543 12
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+.... | ....|+.||+..+.+++..+.
T Consensus 138 ~g~Iv~iss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~ 179 (262)
T PRK07984 138 GSALLTLSYLGAERAI----------P----------------------------NYNVMGLAKASLEANVRYMANAMGP 179 (262)
T ss_pred CcEEEEEecCCCCCCC----------C----------------------------CcchhHHHHHHHHHHHHHHHHHhcc
Confidence 2578999987542110 0 015799999999988887665
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+|+.+..+-||.|-.+... ++ ............. . + ..-+...+|++++++.++..... ...
T Consensus 180 ~gIrVn~i~PG~v~T~~~~---~~----~~~~~~~~~~~~~----~---p--~~r~~~pedva~~~~~L~s~~~~--~it 241 (262)
T PRK07984 180 EGVRVNAISAGPIRTLAAS---GI----KDFRKMLAHCEAV----T---P--IRRTVTIEDVGNSAAFLCSDLSA--GIS 241 (262)
T ss_pred cCcEEeeeecCcccchHHh---cC----CchHHHHHHHHHc----C---C--CcCCCCHHHHHHHHHHHcCcccc--ccc
Confidence 5899999999987443111 00 0000111111110 0 0 11245679999999888754321 124
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
+.+..+.++
T Consensus 242 G~~i~vdgg 250 (262)
T PRK07984 242 GEVVHVDGG 250 (262)
T ss_pred CcEEEECCC
Confidence 556655544
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=118.37 Aligned_cols=221 Identities=16% Similarity=0.117 Sum_probs=140.0
Q ss_pred cCCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGA--SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGa--TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+++|||| ++-||..++++|++.|.+ |++..|..+ ..++++++.+. . ....++.+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~---v~~~~~~~~---~~~~~~~~~~~-------------~-~~~~~~~~ 63 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAE---LAFTYVGDR---FKDRITEFAAE-------------F-GSDLVFPC 63 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe---EEEEccchH---HHHHHHHHHHh-------------c-CCcceeec
Confidence 56899999996 679999999999999876 666655422 13444433211 1 12246789
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------h-----hHHHHHHHHHhHHHHHHHHHHHHH-cCC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIR-------F-----DEALKKAVLLNTRGTKMMLSLAKE-MKH 237 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~-----~~~~~~~~~~Nv~gt~~ll~la~~-~~~ 237 (614)
|+++++ +.+.+++ .+|++||+||... + .+.++..+++|+.|+..+.+.+.. +.+
T Consensus 64 Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~ 137 (260)
T PRK06997 64 DVASDE------QIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSD 137 (260)
T ss_pred cCCCHH------HHHHHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 999876 6665553 5899999998642 1 235667889999999998887765 222
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+.... | ....|+.||+..+.+.+..+.
T Consensus 138 ~g~Ii~iss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~ 179 (260)
T PRK06997 138 DASLLTLSYLGAERVV----------P----------------------------NYNTMGLAKASLEASVRYLAVSLGP 179 (260)
T ss_pred CceEEEEeccccccCC----------C----------------------------CcchHHHHHHHHHHHHHHHHHHhcc
Confidence 3579999987542110 0 015799999988888876654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+|+.+..+.||.|-.+... .+ .........+.. .. + ...+...+|+++++..++..... -..
T Consensus 180 ~gIrVn~i~PG~v~T~~~~---~~----~~~~~~~~~~~~-~~------p--~~r~~~pedva~~~~~l~s~~~~--~it 241 (260)
T PRK06997 180 KGIRANGISAGPIKTLAAS---GI----KDFGKILDFVES-NA------P--LRRNVTIEEVGNVAAFLLSDLAS--GVT 241 (260)
T ss_pred cCeEEEEEeeCccccchhc---cc----cchhhHHHHHHh-cC------c--ccccCCHHHHHHHHHHHhCcccc--Ccc
Confidence 5899999999987543211 00 000111111111 00 1 11246789999999988764321 125
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
+.++.+.++
T Consensus 242 G~~i~vdgg 250 (260)
T PRK06997 242 GEITHVDSG 250 (260)
T ss_pred eeEEEEcCC
Confidence 566666544
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=117.45 Aligned_cols=164 Identities=17% Similarity=0.145 Sum_probs=112.0
Q ss_pred EEEEecccccccHHHHHHHHh----hCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILR----KSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~----~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++||||||.||..++++|++ .|.. |+++.|+.. ++++..+ .++...+ ..++.++.+|+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~---V~~~~r~~~------~~~~~~~-----~l~~~~~---~~~v~~~~~Dl 64 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSV---LVLSARNDE------ALRQLKA-----EIGAERS---GLRVVRVSLDL 64 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcE---EEEEEcCHH------HHHHHHH-----HHHhcCC---CceEEEEEecc
Confidence 589999999999999999997 5654 888888642 2222211 1111111 24688899999
Q ss_pred CCCCCCCCHHHHHHHhcc-----------ccEEEEcccccC-----h-----hHHHHHHHHHhHHHHHHHHHHHHHc---
Q psy6053 180 EADELAIKESDRQLLASE-----------VDIMIHGAATIR-----F-----DEALKKAVLLNTRGTKMMLSLAKEM--- 235 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~-----------vd~ViH~AA~v~-----~-----~~~~~~~~~~Nv~gt~~ll~la~~~--- 235 (614)
++++ +++.+++. .|++||+||... + .+.++..+++|+.|+..+.+.+...
T Consensus 65 ~~~~------~v~~~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~ 138 (256)
T TIGR01500 65 GAEA------GLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKD 138 (256)
T ss_pred CCHH------HHHHHHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 9866 55555432 258999998632 1 2456678999999988877766542
Q ss_pred -CC-CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh
Q psy6053 236 -KH-LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN 313 (614)
Q Consensus 236 -~~-~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~ 313 (614)
++ ..++|++||..+.... | ....|+.||+..+.+.+....
T Consensus 139 ~~~~~~~iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~ 180 (256)
T TIGR01500 139 SPGLNRTVVNISSLCAIQPF----------K----------------------------GWALYCAGKAARDMLFQVLAL 180 (256)
T ss_pred cCCCCCEEEEECCHHhCCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHH
Confidence 11 2579999998653211 0 014699999999988877654
Q ss_pred ----CCCCEEEeecceeec
Q psy6053 314 ----NGMPCLMLRPSIIIP 328 (614)
Q Consensus 314 ----~glp~~IvRp~~I~g 328 (614)
.|+.+..+.||.|-.
T Consensus 181 e~~~~~i~v~~v~PG~v~T 199 (256)
T TIGR01500 181 EEKNPNVRVLNYAPGVLDT 199 (256)
T ss_pred HhcCCCeEEEEecCCcccc
Confidence 579999999998744
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=130.27 Aligned_cols=164 Identities=14% Similarity=0.197 Sum_probs=119.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+++||||+|.||..+++.|++.|.+ |+++.|+. +++++..+. ...++.++.+|+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~D~ 60 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQ---VVVADRNV------ERARERADS-------------LGPDHHALAMDV 60 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHHH-------------hCCceeEEEecc
Confidence 36899999999999999999999999876 88888863 233322110 223567899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC---------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCC-c
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR---------FDEALKKAVLLNTRGTKMMLSLAKEM---KHL-E 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~---------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k 239 (614)
++++ +++.+++ ++|++||+||... ..+.++..+++|+.|+..+++.+... .+- .
T Consensus 61 ~~~~------~~~~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~ 134 (520)
T PRK06484 61 SDEA------QIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGA 134 (520)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCC
Confidence 9876 5555543 5899999998621 13457788999999999998887652 122 3
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+..... + ...|+.||+..+.+++..+. .+
T Consensus 135 ~iv~isS~~~~~~~~---~-----------------------------------~~~Y~asKaal~~l~~~la~e~~~~~ 176 (520)
T PRK06484 135 AIVNVASGAGLVALP---K-----------------------------------RTAYSASKAAVISLTRSLACEWAAKG 176 (520)
T ss_pred eEEEECCcccCCCCC---C-----------------------------------CchHHHHHHHHHHHHHHHHHHhhhhC
Confidence 899999986532210 0 25799999999998876544 58
Q ss_pred CCEEEeecceeecc
Q psy6053 316 MPCLMLRPSIIIPV 329 (614)
Q Consensus 316 lp~~IvRp~~I~g~ 329 (614)
++++.+.||.|-.+
T Consensus 177 i~v~~i~Pg~v~t~ 190 (520)
T PRK06484 177 IRVNAVLPGYVRTQ 190 (520)
T ss_pred eEEEEEccCCcCch
Confidence 99999999987443
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-10 Score=111.86 Aligned_cols=199 Identities=20% Similarity=0.271 Sum_probs=137.9
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
...+|+.||||||.+.||+.++.+++++|.. +.+-+..+.+. .+-.++.. ...++....+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~---~vl~Din~~~~--~etv~~~~---------------~~g~~~~y~c 93 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAK---LVLWDINKQGN--EETVKEIR---------------KIGEAKAYTC 93 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCe---EEEEeccccch--HHHHHHHH---------------hcCceeEEEe
Confidence 3456899999999999999999999999864 77777776553 22222221 1136889999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHH----HHHHHHcCCCc
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMM----LSLAKEMKHLE 239 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~l----l~la~~~~~~k 239 (614)
|+++++ ++.++.+ ++|++|++||.+.. ++..+..+++|+.|.... +-...+ .+-.
T Consensus 94 dis~~e------ei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~-~~~G 166 (300)
T KOG1201|consen 94 DISDRE------EIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLE-NNNG 166 (300)
T ss_pred cCCCHH------HHHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHh-cCCc
Confidence 999976 6655543 58999999998753 566778899999996554 444445 3556
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHH----HHhh--
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVV----EAMN-- 313 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~----~~~~-- 313 (614)
++|-++|..+...... --.|+.||+.+.-.-+ +...
T Consensus 167 HIV~IaS~aG~~g~~g--------------------------------------l~~YcaSK~a~vGfhesL~~EL~~~~ 208 (300)
T KOG1201|consen 167 HIVTIASVAGLFGPAG--------------------------------------LADYCASKFAAVGFHESLSMELRALG 208 (300)
T ss_pred eEEEehhhhcccCCcc--------------------------------------chhhhhhHHHHHHHHHHHHHHHHhcC
Confidence 8999999876432110 1479999997744433 3322
Q ss_pred -CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+|+.++.+-|+.+= + ++ ..|. ..-......++.+.||+.++.+.....
T Consensus 209 ~~~IktTlv~P~~i~-T----------------gm----f~~~-----~~~~~l~P~L~p~~va~~Iv~ai~~n~ 257 (300)
T KOG1201|consen 209 KDGIKTTLVCPYFIN-T----------------GM----FDGA-----TPFPTLAPLLEPEYVAKRIVEAILTNQ 257 (300)
T ss_pred CCCeeEEEEeeeecc-c----------------cc----cCCC-----CCCccccCCCCHHHHHHHHHHHHHcCC
Confidence 57999999998772 1 11 1220 122345678899999999999987643
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-10 Score=111.98 Aligned_cols=221 Identities=14% Similarity=0.083 Sum_probs=137.1
Q ss_pred cCCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGA--SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGa--TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+++|||| ++-||..++++|++.|.. |++..|+.+. +.++++.+ + ...++.++.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~---v~l~~r~~~~----~~~~~~~~---------~----~~~~~~~~~~ 64 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAE---VVLTGFGRAL----RLTERIAK---------R----LPEPAPVLEL 64 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCE---EEEecCccch----hHHHHHHH---------h----cCCCCcEEeC
Confidence 56899999999 899999999999999875 8888875421 11222211 0 1135678899
Q ss_pred CCCCCCCCCCHHHHHHHh-------ccccEEEEcccccC-------h----hHHHHHHHHHhHHHHHHHHHHHHH-cCCC
Q psy6053 178 DAEADELAIKESDRQLLA-------SEVDIMIHGAATIR-------F----DEALKKAVLLNTRGTKMMLSLAKE-MKHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~ 238 (614)
|+++++ +.+.++ .++|++||+||... + .+.+...+++|+.|+..+.+.+.. +.+-
T Consensus 65 Dv~~~~------~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~ 138 (256)
T PRK07889 65 DVTNEE------HLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEG 138 (256)
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccC
Confidence 999876 555443 35899999998642 1 134556789999999988887654 2222
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++|+....+ .| ....|+.||+..+.+.+..+. +
T Consensus 139 g~Iv~is~~~~~~-----------~~----------------------------~~~~Y~asKaal~~l~~~la~el~~~ 179 (256)
T PRK07889 139 GSIVGLDFDATVA-----------WP----------------------------AYDWMGVAKAALESTNRYLARDLGPR 179 (256)
T ss_pred ceEEEEeeccccc-----------CC----------------------------ccchhHHHHHHHHHHHHHHHHHhhhc
Confidence 4688887542110 00 014689999988887766544 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+.+..+.||.|-.+..+..++ ........... .+ ....+...+++|++++.++..... ...+
T Consensus 180 gIrvn~v~PG~v~T~~~~~~~~-------~~~~~~~~~~~----~p----~~~~~~~p~evA~~v~~l~s~~~~--~~tG 242 (256)
T PRK07889 180 GIRVNLVAAGPIRTLAAKAIPG-------FELLEEGWDER----AP----LGWDVKDPTPVARAVVALLSDWFP--ATTG 242 (256)
T ss_pred CeEEEeeccCcccChhhhcccC-------cHHHHHHHHhc----Cc----cccccCCHHHHHHHHHHHhCcccc--cccc
Confidence 8999999999885543221111 01111111110 00 011245779999999988754321 1245
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.++.+.++
T Consensus 243 ~~i~vdgg 250 (256)
T PRK07889 243 EIVHVDGG 250 (256)
T ss_pred eEEEEcCc
Confidence 56655443
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=108.63 Aligned_cols=150 Identities=23% Similarity=0.277 Sum_probs=112.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||+|-||..++++|+++|.. +|+++.|+. ..++.+++.+ .++ . ...++.++++|++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~--~v~~~~r~~----~~~~~~~l~~-----~l~----~-~~~~~~~~~~D~~~~ 64 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGAR--VVILTSRSE----DSEGAQELIQ-----ELK----A-PGAKITFIECDLSDP 64 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTE--EEEEEESSC----HHHHHHHHHH-----HHH----H-TTSEEEEEESETTSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCce--EEEEeeecc----cccccccccc-----ccc----c-ccccccccccccccc
Confidence 68999999999999999999999643 588888871 2233333311 111 1 337899999999987
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
+ +.+.+++ .+|++||+|+... -.+.++..+++|+.+...+.+++.. .+-.++|++||..
T Consensus 65 ~------~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~ 137 (167)
T PF00106_consen 65 E------SIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA 137 (167)
T ss_dssp H------HHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred c------cccccccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence 5 6665554 5799999999865 2356778899999999999999988 5778999999986
Q ss_pred eccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh
Q psy6053 249 CHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN 313 (614)
Q Consensus 249 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~ 313 (614)
+..+. |. -..|+.||+..+.+++..+.
T Consensus 138 ~~~~~----------~~----------------------------~~~Y~askaal~~~~~~la~ 164 (167)
T PF00106_consen 138 GVRGS----------PG----------------------------MSAYSASKAALRGLTQSLAA 164 (167)
T ss_dssp GTSSS----------TT----------------------------BHHHHHHHHHHHHHHHHHHH
T ss_pred hccCC----------CC----------------------------ChhHHHHHHHHHHHHHHHHH
Confidence 54221 11 14799999999999887654
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-10 Score=116.42 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=114.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC----HHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN----ARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~----~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+++|+++||||++.||..++++|++.|.+ |++..|...... ..+++++..+ .+. . ...++.++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~---Vv~~~r~~~~~~~~~~~~~~~~~~~~-----~l~----~-~~~~~~~~ 72 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGAT---VYVTGRSTRARRSEYDRPETIEETAE-----LVT----A-AGGRGIAV 72 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEecccccccccccccchHHHHHH-----HHH----h-cCCceEEE
Confidence 56899999999999999999999999865 888888743210 0122222110 111 1 22457789
Q ss_pred eCCCCCCCCCCCHHHHHHHhc-------cccEEEEcc-ccc-------Ch----hHHHHHHHHHhHHHHHHHHHHHHHc-
Q psy6053 176 SGDAEADELAIKESDRQLLAS-------EVDIMIHGA-ATI-------RF----DEALKKAVLLNTRGTKMMLSLAKEM- 235 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~A-A~v-------~~----~~~~~~~~~~Nv~gt~~ll~la~~~- 235 (614)
.+|+++++ +++.+++ .+|++||+| +.. .+ .+.+...+++|+.|+..+.+.+...
T Consensus 73 ~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m 146 (305)
T PRK08303 73 QVDHLVPE------QVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLL 146 (305)
T ss_pred EcCCCCHH------HHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999876 5655543 589999999 631 11 2345567889999988887766542
Q ss_pred --CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh
Q psy6053 236 --KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN 313 (614)
Q Consensus 236 --~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~ 313 (614)
.+-.++|++||..+...... .+ ....|+.||+..+.+.+..+.
T Consensus 147 ~~~~~g~IV~isS~~~~~~~~~-------~~----------------------------~~~~Y~asKaal~~lt~~La~ 191 (305)
T PRK08303 147 IRRPGGLVVEITDGTAEYNATH-------YR----------------------------LSVFYDLAKTSVNRLAFSLAH 191 (305)
T ss_pred hhCCCcEEEEECCccccccCcC-------CC----------------------------CcchhHHHHHHHHHHHHHHHH
Confidence 12357999998643110000 00 013699999988888766544
Q ss_pred ----CCCCEEEeecceee
Q psy6053 314 ----NGMPCLMLRPSIII 327 (614)
Q Consensus 314 ----~glp~~IvRp~~I~ 327 (614)
.|+.+..+.||.|-
T Consensus 192 el~~~gIrVn~v~PG~v~ 209 (305)
T PRK08303 192 ELAPHGATAVALTPGWLR 209 (305)
T ss_pred HhhhcCcEEEEecCCccc
Confidence 58999999998773
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=115.36 Aligned_cols=222 Identities=12% Similarity=0.076 Sum_probs=138.7
Q ss_pred ccCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.+++|+++||||++ -||+.+++.|++.|.+ |++..|+. ...+.++++.+. . ....++.
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~---v~~~~r~~---~~~~~~~~l~~~-------------~-g~~~~~~ 64 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAE---LWFTYQSE---VLEKRVKPLAEE-------------I-GCNFVSE 64 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCE---EEEEeCch---HHHHHHHHHHHh-------------c-CCceEEE
Confidence 35689999999997 7999999999999876 66666642 123334433211 1 1223578
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------h----hHHHHHHHHHhHHHHHHHHHHHHH-cCC
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIR-------F----DEALKKAVLLNTRGTKMMLSLAKE-MKH 237 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~ 237 (614)
+|+++++ +.+.+++ .+|++||+|+... + .+.++..+++|+.|+..+++.+.. +..
T Consensus 65 ~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~ 138 (260)
T PRK06603 65 LDVTNPK------SISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD 138 (260)
T ss_pred ccCCCHH------HHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999976 5555543 5899999998632 1 245677899999999998887653 222
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+.... | ....|+.||+..+.+.+..+.
T Consensus 139 ~G~Iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~ 180 (260)
T PRK06603 139 GGSIVTLTYYGAEKVI----------P----------------------------NYNVMGVAKAALEASVKYLANDMGE 180 (260)
T ss_pred CceEEEEecCccccCC----------C----------------------------cccchhhHHHHHHHHHHHHHHHhhh
Confidence 2589999987542110 0 015799999988888776654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+|+.+..+.||.|-.+..... + ............ . + ...+...+|+|++++.++..... -..
T Consensus 181 ~gIrVn~v~PG~v~T~~~~~~----~---~~~~~~~~~~~~-~------p--~~r~~~pedva~~~~~L~s~~~~--~it 242 (260)
T PRK06603 181 NNIRVNAISAGPIKTLASSAI----G---DFSTMLKSHAAT-A------P--LKRNTTQEDVGGAAVYLFSELSK--GVT 242 (260)
T ss_pred cCeEEEEEecCcCcchhhhcC----C---CcHHHHHHHHhc-C------C--cCCCCCHHHHHHHHHHHhCcccc--cCc
Confidence 689999999998854321100 0 001111111110 0 1 01235569999999988854321 124
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
+.++.+.++
T Consensus 243 G~~i~vdgG 251 (260)
T PRK06603 243 GEIHYVDCG 251 (260)
T ss_pred ceEEEeCCc
Confidence 555555444
|
|
| >KOG4288|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=112.21 Aligned_cols=208 Identities=15% Similarity=0.065 Sum_probs=145.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
..+++.|+.||.|.++++.-...++. |-.|.|+...+ .++ . ....+.++.||....
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~s---vgilsen~~k~-~l~-------------------s-w~~~vswh~gnsfss 108 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHS---VGILSENENKQ-TLS-------------------S-WPTYVSWHRGNSFSS 108 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhcee---eeEeecccCcc-hhh-------------------C-CCcccchhhcccccc
Confidence 45899999999999999999999777 78888886532 111 1 456788889988765
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee-ccCCcccccccC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC-HLQEKVLYEKPY 261 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~-~~~~~~i~E~~~ 261 (614)
+ -++....++..++-+++--. ....+.++|-....+-.++|.+ .++++|+|+|..-. ..+
T Consensus 109 n------~~k~~l~g~t~v~e~~ggfg---n~~~m~~ing~ani~a~kaa~~-~gv~~fvyISa~d~~~~~--------- 169 (283)
T KOG4288|consen 109 N------PNKLKLSGPTFVYEMMGGFG---NIILMDRINGTANINAVKAAAK-AGVPRFVYISAHDFGLPP--------- 169 (283)
T ss_pred C------cchhhhcCCcccHHHhcCcc---chHHHHHhccHhhHHHHHHHHH-cCCceEEEEEhhhcCCCC---------
Confidence 5 35666678888888876532 2345677888888888999999 59999999998732 111
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~ 341 (614)
-.|.+|-.+|..||..+..-. ++.-+|+|||.+||... +.|----+
T Consensus 170 ------------------------------~i~rGY~~gKR~AE~Ell~~~--~~rgiilRPGFiyg~R~--v~g~~~pL 215 (283)
T KOG4288|consen 170 ------------------------------LIPRGYIEGKREAEAELLKKF--RFRGIILRPGFIYGTRN--VGGIKSPL 215 (283)
T ss_pred ------------------------------ccchhhhccchHHHHHHHHhc--CCCceeeccceeecccc--cCcccccH
Confidence 114699999999998877654 57789999999999943 22211111
Q ss_pred CchHHHHHHHhcCc---eeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 342 NGPTGLLIGAGKGV---IRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 342 ~g~~~~~~~~~~g~---~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
.....-+....++. +..++.-+......++|++||.+.+.++.++.
T Consensus 216 ~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~ 264 (283)
T KOG4288|consen 216 HTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPD 264 (283)
T ss_pred HhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCC
Confidence 11111222222332 22344557778889999999999999886654
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=120.54 Aligned_cols=196 Identities=15% Similarity=0.100 Sum_probs=115.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+++++||||||.||.+++++|++.| ++ |+++.|... +.+++.+ .+. . ...++.++.+|++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~---V~l~~r~~~------~~~~~~~-----~l~----~-~~~~~~~~~~Dl~ 63 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWH---VIMACRDFL------KAEQAAK-----SLG----M-PKDSYTIMHLDLG 63 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCE---EEEEeCCHH------HHHHHHH-----Hhc----C-CCCeEEEEEcCCC
Confidence 6799999999999999999999998 55 888888642 2222211 111 1 2246788999999
Q ss_pred CCCCCCCHHHHHHHh-------ccccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHH----cC-CCce
Q psy6053 181 ADELAIKESDRQLLA-------SEVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKE----MK-HLEL 240 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~----~~-~~k~ 240 (614)
+++ +++.++ .++|++||+||.... .+.++..+++|+.|+..+++.+.. .+ +..+
T Consensus 64 ~~~------~v~~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~ 137 (314)
T TIGR01289 64 SLD------SVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKR 137 (314)
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCe
Confidence 876 444443 358999999996421 245677899999998887666543 11 1368
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-----CC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-----NG 315 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-----~g 315 (614)
+|++||..++.... ... ++++.+..++....+..... ....... .......|+.||+....+.++... .|
T Consensus 138 IV~vsS~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~g 212 (314)
T TIGR01289 138 LIIVGSITGNTNTL--AGN-VPPKANLGDLSGLAAGFKAP-IAMIDGK-EFKGAKAYKDSKVCNMLTVRELHRRFHDETG 212 (314)
T ss_pred EEEEecCccccccC--CCc-CCCcccccccccccccCCCc-ccccCCC-CcchhhhHHHhHHHHHHHHHHHHHHhccCCC
Confidence 99999986643210 000 00000000000000000000 0000000 001124799999997666655432 37
Q ss_pred CCEEEeecceee
Q psy6053 316 MPCLMLRPSIII 327 (614)
Q Consensus 316 lp~~IvRp~~I~ 327 (614)
+.++.++||.|.
T Consensus 213 i~v~~v~PG~v~ 224 (314)
T TIGR01289 213 ITFASLYPGCIA 224 (314)
T ss_pred eEEEEecCCccc
Confidence 889999999884
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.2e-10 Score=109.88 Aligned_cols=164 Identities=13% Similarity=0.175 Sum_probs=111.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+++||||++-||+.++++|++.|.+ |++..|..+ ++++..+ .++. ...++..+.+|+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~---V~~~~r~~~------~l~~~~~-----~i~~-----~~~~~~~~~~D~ 63 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT---LILCDQDQS------ALKDTYE-----QCSA-----LTDNVYSFQLKD 63 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE---EEEEcCCHH------HHHHHHH-----HHHh-----cCCCeEEEEccC
Confidence 46799999999999999999999999876 788888642 2222211 1111 223577788999
Q ss_pred CCCCCCCCHHHHHHHh-------c-cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCc
Q psy6053 180 EADELAIKESDRQLLA-------S-EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKE-M---KHLE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~-~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k 239 (614)
++++ +++.++ . .+|++||+||... + .+.+...+++|+.++..+++.+.. + ++-.
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g 137 (227)
T PRK08862 64 FSQE------SIRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKG 137 (227)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc
Confidence 8865 555443 3 6899999997432 1 134555678888888777655432 2 1235
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
.+|++||..+.+. ...|+.||+.-+.+.+..+. .|
T Consensus 138 ~Iv~isS~~~~~~-----------------------------------------~~~Y~asKaal~~~~~~la~el~~~~ 176 (227)
T PRK08862 138 VIVNVISHDDHQD-----------------------------------------LTGVESSNALVSGFTHSWAKELTPFN 176 (227)
T ss_pred eEEEEecCCCCCC-----------------------------------------cchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 8999998643210 14799999988887766544 58
Q ss_pred CCEEEeecceeecc
Q psy6053 316 MPCLMLRPSIIIPV 329 (614)
Q Consensus 316 lp~~IvRp~~I~g~ 329 (614)
+.+..+.||.+-.+
T Consensus 177 Irvn~v~PG~i~t~ 190 (227)
T PRK08862 177 IRVGGVVPSIFSAN 190 (227)
T ss_pred cEEEEEecCcCcCC
Confidence 99999999977443
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.8e-10 Score=105.32 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=113.4
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEcc-CCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ-KKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~-~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
+++||||+|-||..+++.|.+++ ..+|+++.|+ .......+.++++.+ ...+|.++.+|++++
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l~~--------------~g~~v~~~~~Dv~d~ 65 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRELES--------------AGARVEYVQCDVTDP 65 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHHH--------------TT-EEEEEE--TTSH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHHHh--------------CCCceeeeccCccCH
Confidence 68999999999999999999997 3589999999 344444555555422 335899999999997
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
+ ++.++++ .++.|||+|+.... .+.+...+..-+.|+.+|.++... ..++.||.+||..
T Consensus 66 ~------~v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~-~~l~~~i~~SSis 138 (181)
T PF08659_consen 66 E------AVAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALEN-RPLDFFILFSSIS 138 (181)
T ss_dssp H------HHHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT-TTTSEEEEEEEHH
T ss_pred H------HHHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhc-CCCCeEEEECChh
Confidence 6 7777764 46899999997532 245667788899999999999988 5899999999985
Q ss_pred e-ccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecc
Q psy6053 249 C-HLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPS 324 (614)
Q Consensus 249 ~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~ 324 (614)
+ .+... -..|+..-...+.+.......|.|+..+..+
T Consensus 139 ~~~G~~g---------------------------------------q~~YaaAN~~lda~a~~~~~~g~~~~sI~wg 176 (181)
T PF08659_consen 139 SLLGGPG---------------------------------------QSAYAAANAFLDALARQRRSRGLPAVSINWG 176 (181)
T ss_dssp HHTT-TT---------------------------------------BHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred HhccCcc---------------------------------------hHhHHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 4 22211 1468888888888887766678998887755
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=109.74 Aligned_cols=164 Identities=12% Similarity=0.137 Sum_probs=107.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+++||||++.||+.++++|. +|.. |+++.|+.. +++++.+ .+++. ...++.++.+|++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~---Vil~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGED---VVLAARRPE------AAQGLAS-----DLRQR----GATSVHVLSFDAQDL 61 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCE---EEEEeCCHH------HHHHHHH-----HHHhc----cCCceEEEEcccCCH
Confidence 679999999999999999998 4654 888888642 2222211 11110 123578899999997
Q ss_pred CCCCCHHHHHHHh-------ccccEEEEcccccChh-------HHHHHHHHHhHHHHHHHHHHH----HHcCCCceEEEE
Q psy6053 183 ELAIKESDRQLLA-------SEVDIMIHGAATIRFD-------EALKKAVLLNTRGTKMMLSLA----KEMKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~~-------~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V~v 244 (614)
+ +.+.++ .++|++||+||..... +...+...+|+.+...++..+ .+.+.-.++|++
T Consensus 62 ~------~v~~~~~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~i 135 (246)
T PRK05599 62 D------THRELVKQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAF 135 (246)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6 444433 3589999999975321 123345678888877665544 221123589999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... | ....|+.||+..+.+.+..+. .|+.+..
T Consensus 136 sS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~ 177 (246)
T PRK05599 136 SSIAGWRAR----------R----------------------------ANYVYGSTKAGLDAFCQGLADSLHGSHVRLII 177 (246)
T ss_pred eccccccCC----------c----------------------------CCcchhhHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 998653211 0 015799999988777766544 5788999
Q ss_pred eecceeecc
Q psy6053 321 LRPSIIIPV 329 (614)
Q Consensus 321 vRp~~I~g~ 329 (614)
+.||.|..+
T Consensus 178 v~PG~v~T~ 186 (246)
T PRK05599 178 ARPGFVIGS 186 (246)
T ss_pred ecCCcccch
Confidence 999977543
|
|
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=114.14 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=135.2
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
..+.++|||+||||-+|+-+++.|+++|+. |++++|+..+. ++++. + .. .......+..|
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~---vra~VRd~~~a------~~~~~--~--------~~-~d~~~~~v~~~ 135 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFS---VRALVRDEQKA------EDLLG--V--------FF-VDLGLQNVEAD 135 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCe---eeeeccChhhh------hhhhc--c--------cc-cccccceeeec
Confidence 345689999999999999999999999976 99999986432 12211 0 00 22344555555
Q ss_pred CCCCCCCCCHHHHHHHhcc----ccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc
Q psy6053 179 AEADELAIKESDRQLLASE----VDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK 254 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~----vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~ 254 (614)
...+. +....+.+. +.+++-|++...-.++...-..+...|++|++++|+.+ +++++|++|++.+.-...
T Consensus 136 ~~~~~-----d~~~~~~~~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~a-Gvk~~vlv~si~~~~~~~ 209 (411)
T KOG1203|consen 136 VVTAI-----DILKKLVEAVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKA-GVKRVVLVGSIGGTKFNQ 209 (411)
T ss_pred ccccc-----chhhhhhhhccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHh-CCceEEEEEeecCcccCC
Confidence 55433 133344433 34666666544322211223457788999999999995 999999998886533221
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~ 334 (614)
|...... -..+-.+|..+|+.+.+. |++.+|+||+...-...
T Consensus 210 ---------~~~~~~~-----------------------~~~~~~~k~~~e~~~~~S---gl~ytiIR~g~~~~~~~--- 251 (411)
T KOG1203|consen 210 ---------PPNILLL-----------------------NGLVLKAKLKAEKFLQDS---GLPYTIIRPGGLEQDTG--- 251 (411)
T ss_pred ---------Cchhhhh-----------------------hhhhhHHHHhHHHHHHhc---CCCcEEEeccccccCCC---
Confidence 0000000 024457788999988866 99999999995432111
Q ss_pred ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 335 PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
| . .+. ....... ....+...-.++-.++|+.++.++..... ....+..+++..+-|-++-+
T Consensus 252 -~---~--~~~------~~~~~~~-~~~~~~~~~~i~r~~vael~~~all~~~~---~~~k~~~~v~~~~gpg~~~~ 312 (411)
T KOG1203|consen 252 -G---Q--REV------VVDDEKE-LLTVDGGAYSISRLDVAELVAKALLNEAA---TFKKVVELVLKPEGPGRPYK 312 (411)
T ss_pred -C---c--cee------cccCccc-cccccccceeeehhhHHHHHHHHHhhhhh---ccceeEEeecCCCCCCccHH
Confidence 0 0 000 0000000 01112222467888999999988887764 12234444444333444433
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=114.30 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=83.1
Q ss_pred EEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 106 FMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 106 LITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
+||||||.||..++++|++.| .. |++..|+.. +.++..+ .+ .. ...++.++.+|+++++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~---V~~~~r~~~------~~~~~~~-----~l----~~-~~~~~~~~~~Dl~d~~- 60 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWH---VVMACRDFL------KAERAAK-----SA----GM-PKDSYTVMHLDLASLD- 60 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCE---EEEEeCCHH------HHHHHHH-----Hh----cC-CCCeEEEEEecCCCHH-
Confidence 599999999999999999998 54 888887532 2222111 00 01 2246888999999866
Q ss_pred CCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHH-c--CC--CceEEEE
Q psy6053 185 AIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKE-M--KH--LELFVHI 244 (614)
Q Consensus 185 GLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~--~k~~V~v 244 (614)
+++.+++ .+|++||+||... + .+.++..+++|+.|+..+++.+.. + .+ ..++|++
T Consensus 61 -----~v~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~v 135 (308)
T PLN00015 61 -----SVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIV 135 (308)
T ss_pred -----HHHHHHHHHHhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5554443 5799999999642 1 245677899999998777665443 1 22 3689999
Q ss_pred eCceec
Q psy6053 245 STAYCH 250 (614)
Q Consensus 245 ST~~~~ 250 (614)
||..++
T Consensus 136 sS~~~~ 141 (308)
T PLN00015 136 GSITGN 141 (308)
T ss_pred eccccc
Confidence 998653
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=102.44 Aligned_cols=164 Identities=19% Similarity=0.300 Sum_probs=113.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhcccccc-CeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKII-DKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~-~~v~~v~gD 178 (614)
..+|+||||||++-||+.++++|++.|.. |+++.|..... ..+.+.+... . .. ..+.+...|
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~---v~~~~~~~~~~-~~~~~~~~~~------------~-~~~~~~~~~~~D 65 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGAR---VVVAARRSEEE-AAEALAAAIK------------E-AGGGRAAAVAAD 65 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCe---EEEEcCCCchh-hHHHHHHHHH------------h-cCCCcEEEEEec
Confidence 45789999999999999999999988876 67777765432 1121221110 0 11 367788899
Q ss_pred CCC-CCCCCCHHHHHHHh-------ccccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHcCCCc--e
Q psy6053 179 AEA-DELAIKESDRQLLA-------SEVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEMKHLE--L 240 (614)
Q Consensus 179 l~~-~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k--~ 240 (614)
+++ +. +.+.++ .++|+++|+|+... + .+.++..+++|+.|...+.+++.. ..+ +
T Consensus 66 vs~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~--~~~~~~ 137 (251)
T COG1028 66 VSDDEE------SVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALP--LMKKQR 137 (251)
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHH--hhhhCe
Confidence 997 33 444333 24899999999742 2 256778899999999998884443 334 8
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|.+||..+. ..... ...|+.||+..+.+...... .|+
T Consensus 138 Iv~isS~~~~-~~~~~-------------------------------------~~~Y~~sK~al~~~~~~l~~e~~~~gi 179 (251)
T COG1028 138 IVNISSVAGL-GGPPG-------------------------------------QAAYAASKAALIGLTKALALELAPRGI 179 (251)
T ss_pred EEEECCchhc-CCCCC-------------------------------------cchHHHHHHHHHHHHHHHHHHHhhhCc
Confidence 9999999754 21100 14799999988877766553 588
Q ss_pred CEEEeeccee
Q psy6053 317 PCLMLRPSII 326 (614)
Q Consensus 317 p~~IvRp~~I 326 (614)
.+..+-||.+
T Consensus 180 ~v~~v~PG~~ 189 (251)
T COG1028 180 RVNAVAPGYI 189 (251)
T ss_pred EEEEEEeccC
Confidence 9999999944
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-07 Score=95.89 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=114.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+|.|||||+-.-.|..|+.+|.++|.. |++-.-.+.+ .+-++... ..++...+.-|+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~---V~Agcl~~~g---ae~L~~~~---------------~s~rl~t~~LDV 85 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFR---VFAGCLTEEG---AESLRGET---------------KSPRLRTLQLDV 85 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCE---EEEEeecCch---HHHHhhhh---------------cCCcceeEeecc
Confidence 45688999999988999999999999987 7766643333 22222110 146788889999
Q ss_pred CCCCCCCCHHHHHHHhc---------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHH----HHHHHcCCC
Q psy6053 180 EADELAIKESDRQLLAS---------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMML----SLAKEMKHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll----~la~~~~~~ 238 (614)
++++ .++++.+ +.-.|||+||...+ .+.|+..+++|..||.++. -+.++. -
T Consensus 86 T~~e------si~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~a--r 157 (322)
T KOG1610|consen 86 TKPE------SVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRA--R 157 (322)
T ss_pred CCHH------HHHHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhc--c
Confidence 9987 6666554 34699999995432 3678889999999977664 455553 3
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.|+|++||..+--.. +.-.+|+.||+..|......+. .
T Consensus 158 GRvVnvsS~~GR~~~--------------------------------------p~~g~Y~~SK~aVeaf~D~lR~EL~~f 199 (322)
T KOG1610|consen 158 GRVVNVSSVLGRVAL--------------------------------------PALGPYCVSKFAVEAFSDSLRRELRPF 199 (322)
T ss_pred CeEEEecccccCccC--------------------------------------cccccchhhHHHHHHHHHHHHHHHHhc
Confidence 589999999762211 0126899999999887765554 6
Q ss_pred CCCEEEeecc
Q psy6053 315 GMPCLMLRPS 324 (614)
Q Consensus 315 glp~~IvRp~ 324 (614)
|+.++|+-||
T Consensus 200 GV~VsiiePG 209 (322)
T KOG1610|consen 200 GVKVSIIEPG 209 (322)
T ss_pred CcEEEEeccC
Confidence 9999999999
|
|
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-09 Score=100.45 Aligned_cols=223 Identities=21% Similarity=0.206 Sum_probs=140.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..||++++|||.|.||..+.++|+..| ++.+..+.|-++. .+.. .|++-+|. .++.++.+|+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kg--ik~~~i~~~~En~-~a~a------------kL~ai~p~---~~v~F~~~DV 64 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKG--IKVLVIDDSEENP-EAIA------------KLQAINPS---VSVIFIKCDV 64 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcC--chheeehhhhhCH-HHHH------------HHhccCCC---ceEEEEEecc
Confidence 459999999999999999999999997 4455566665432 1222 33344444 7899999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccChhHHHHHHHHHhHHHHHH----HHHHHHHcC--CCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRFDEALKKAVLLNTRGTKM----MLSLAKEMK--HLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~----ll~la~~~~--~~k~~V~vST 246 (614)
++.. +++..++ .+|++||.|+..+ +.+++..+.+|..|..+ .|....+-. .-.-+|.+||
T Consensus 65 t~~~------~~~~~f~ki~~~fg~iDIlINgAGi~~-dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsS 137 (261)
T KOG4169|consen 65 TNRG------DLEAAFDKILATFGTIDILINGAGILD-DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSS 137 (261)
T ss_pred ccHH------HHHHHHHHHHHHhCceEEEEccccccc-chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecc
Confidence 9854 5555544 5799999999876 66788888999876544 455444421 2335899999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHH--------HHHHHHHHHhhCCCCE
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKC--------LSEGLVVEAMNNGMPC 318 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~--------~aE~lv~~~~~~glp~ 318 (614)
.++.. |.|.. ..|+.||+ +|...- +.+.|+.+
T Consensus 138 v~GL~----------P~p~~----------------------------pVY~AsKaGVvgFTRSla~~ay--y~~sGV~~ 177 (261)
T KOG4169|consen 138 VAGLD----------PMPVF----------------------------PVYAASKAGVVGFTRSLADLAY--YQRSGVRF 177 (261)
T ss_pred ccccC----------ccccc----------------------------hhhhhcccceeeeehhhhhhhh--HhhcCEEE
Confidence 98733 22221 24555554 443322 22249999
Q ss_pred EEeecceeecccCCCC---ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 319 LMLRPSIIIPVWREPL---PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~---~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
..+.||.+-..-.+-+ .+|.+- ...+...+. ...--+-..+++.++.+++.+. ++.
T Consensus 178 ~avCPG~t~t~l~~~~~~~~~~~e~----~~~~~~~l~------------~~~~q~~~~~a~~~v~aiE~~~-----NGa 236 (261)
T KOG4169|consen 178 NAVCPGFTRTDLAENIDASGGYLEY----SDSIKEALE------------RAPKQSPACCAINIVNAIEYPK-----NGA 236 (261)
T ss_pred EEECCCcchHHHHHHHHhcCCcccc----cHHHHHHHH------------HcccCCHHHHHHHHHHHHhhcc-----CCc
Confidence 9999997743322211 122111 011111111 1112355678999999998854 788
Q ss_pred EEEeccCCccccc
Q psy6053 396 IVHLTSSQEWQVS 408 (614)
Q Consensus 396 vyni~~~~~~~it 408 (614)
+|-+..+..+++.
T Consensus 237 iw~v~~g~l~~~~ 249 (261)
T KOG4169|consen 237 IWKVDSGSLEPVF 249 (261)
T ss_pred EEEEecCcEEEee
Confidence 9999888544443
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=100.61 Aligned_cols=173 Identities=21% Similarity=0.267 Sum_probs=122.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+.||.++||||+.-||+.++++|.+.|.. |+...|..... .+-.+++... .. ...++..+.+|
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~---v~i~~r~~~~~--~~~~~~~~~~----------~~-~~~~~~~~~~D 68 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAK---VVITGRSEERL--EETAQELGGL----------GY-TGGKVLAIVCD 68 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHHH--HHHHHHHHhc----------CC-CCCeeEEEECc
Confidence 367999999999999999999999999865 88888875321 1111111110 00 23578999999
Q ss_pred CCCCCCCCCHHHHHHHh--------ccccEEEEcccccCh--------hHHHHHHHHHhHHH-HHHHHHHHHHc---CCC
Q psy6053 179 AEADELAIKESDRQLLA--------SEVDIMIHGAATIRF--------DEALKKAVLLNTRG-TKMMLSLAKEM---KHL 238 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~--------~~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~g-t~~ll~la~~~---~~~ 238 (614)
+++.. +.+.+. .++|+++++||.... .+.++..+++|+.| +.++...|..+ .+-
T Consensus 69 v~~~~------~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~g 142 (270)
T KOG0725|consen 69 VSKEV------DVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKG 142 (270)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCC
Confidence 99764 444443 358999999997542 25577889999995 67776666654 234
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
..++++||..+..... ..+..|+.||..-+++.+..+. +
T Consensus 143 g~I~~~ss~~~~~~~~-------------------------------------~~~~~Y~~sK~al~~ltr~lA~El~~~ 185 (270)
T KOG0725|consen 143 GSIVNISSVAGVGPGP-------------------------------------GSGVAYGVSKAALLQLTRSLAKELAKH 185 (270)
T ss_pred ceEEEEeccccccCCC-------------------------------------CCcccchhHHHHHHHHHHHHHHHHhhc
Confidence 4688888885532210 0114799999999999887665 6
Q ss_pred CCCEEEeecceeeccc
Q psy6053 315 GMPCLMLRPSIIIPVW 330 (614)
Q Consensus 315 glp~~IvRp~~I~g~~ 330 (614)
|+++..+=||.|..+.
T Consensus 186 gIRvN~v~PG~i~T~~ 201 (270)
T KOG0725|consen 186 GIRVNSVSPGLVKTSL 201 (270)
T ss_pred CcEEEEeecCcEeCCc
Confidence 9999999999987764
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=106.13 Aligned_cols=180 Identities=19% Similarity=0.247 Sum_probs=121.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC-CCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK-KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~-~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+.+++++|||||..||...+++|.++|. +|+...|+. .++.+.+++.+ + . ...++.++.+|
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga---~Vv~~~R~~~~~~~~~~~i~~------------~--~-~~~~i~~~~lD 94 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA---HVVLACRNEERGEEAKEQIQK------------G--K-ANQKIRVIQLD 94 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC---EEEEEeCCHHHHHHHHHHHHh------------c--C-CCCceEEEECC
Confidence 5679999999999999999999999985 499999985 33333333322 1 1 44789999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh----h-HHHHHHHHHhHHHHHHHH----HHHHHcCCCceEE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF----D-EALKKAVLLNTRGTKMML----SLAKEMKHLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~----~-~~~~~~~~~Nv~gt~~ll----~la~~~~~~k~~V 242 (614)
+++.. .+....+ ..|+.|++||.... . +.++..+.+|..|...|. ...+.. ...|+|
T Consensus 95 Lssl~------SV~~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s-~~~RIV 167 (314)
T KOG1208|consen 95 LSSLK------SVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRS-APSRIV 167 (314)
T ss_pred CCCHH------HHHHHHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhC-CCCCEE
Confidence 99876 5555443 57999999997532 2 356778999999976655 445553 337999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCL 319 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~ 319 (614)
++||... ......+ .++.+.. +. -.....|+.||..-.....+..+ .|+.+.
T Consensus 168 ~vsS~~~-~~~~~~~------------------~l~~~~~----~~--~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~ 222 (314)
T KOG1208|consen 168 NVSSILG-GGKIDLK------------------DLSGEKA----KL--YSSDAAYALSKLANVLLANELAKRLKKGVTTY 222 (314)
T ss_pred EEcCccc-cCccchh------------------hccchhc----cC--ccchhHHHHhHHHHHHHHHHHHHHhhcCceEE
Confidence 9999865 1110000 0000000 00 00012599999988777777766 278899
Q ss_pred Eeecceeecc
Q psy6053 320 MLRPSIIIPV 329 (614)
Q Consensus 320 IvRp~~I~g~ 329 (614)
.+.||.|..+
T Consensus 223 ~~hPG~v~t~ 232 (314)
T KOG1208|consen 223 SVHPGVVKTT 232 (314)
T ss_pred EECCCccccc
Confidence 9999988665
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-08 Score=90.13 Aligned_cols=198 Identities=12% Similarity=0.077 Sum_probs=128.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|-|.||||-+|+.|+++.+++||+ |.+++|++.... ..+.+.+++.|+.++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe---VTAivRn~~K~~------------------------~~~~~~i~q~Difd~ 53 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE---VTAIVRNASKLA------------------------ARQGVTILQKDIFDL 53 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCe---eEEEEeChHhcc------------------------ccccceeecccccCh
Confidence 68999999999999999999999998 999999875422 225688999999998
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee---ccCCcccccc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC---HLQEKVLYEK 259 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~---~~~~~~i~E~ 259 (614)
. .+.+.+.+.|+||..-+...-+ +. .........+++..+. .++.|++.|..+.+ ......++-
T Consensus 54 ~------~~a~~l~g~DaVIsA~~~~~~~-~~----~~~~k~~~~li~~l~~-agv~RllVVGGAGSL~id~g~rLvD~- 120 (211)
T COG2910 54 T------SLASDLAGHDAVISAFGAGASD-ND----ELHSKSIEALIEALKG-AGVPRLLVVGGAGSLEIDEGTRLVDT- 120 (211)
T ss_pred h------hhHhhhcCCceEEEeccCCCCC-hh----HHHHHHHHHHHHHHhh-cCCeeEEEEcCccceEEcCCceeecC-
Confidence 7 6678888999999864433111 11 1122335678888887 48899999987743 222211111
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCC-chhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcccc
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPN-SYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn-~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~ 338 (614)
| .+|- -|..++..+|.+-.--...++.++-+-|+..+-|.+. .
T Consensus 121 ----p---------------------------~fP~ey~~~A~~~ae~L~~Lr~~~~l~WTfvSPaa~f~PGer--T--- 164 (211)
T COG2910 121 ----P---------------------------DFPAEYKPEALAQAEFLDSLRAEKSLDWTFVSPAAFFEPGER--T--- 164 (211)
T ss_pred ----C---------------------------CCchhHHHHHHHHHHHHHHHhhccCcceEEeCcHHhcCCccc--c---
Confidence 1 1222 3456677777442222224699999999988776432 1
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhh
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~ 388 (614)
+-|. .|.-. +.. ...--+.|...|.|-+++.-++++..
T Consensus 165 -g~yr---------lggD~-ll~-n~~G~SrIS~aDYAiA~lDe~E~~~h 202 (211)
T COG2910 165 -GNYR---------LGGDQ-LLV-NAKGESRISYADYAIAVLDELEKPQH 202 (211)
T ss_pred -CceE---------eccce-EEE-cCCCceeeeHHHHHHHHHHHHhcccc
Confidence 1111 11111 111 22333567888889899988887653
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.2e-08 Score=99.85 Aligned_cols=240 Identities=11% Similarity=0.049 Sum_probs=135.3
Q ss_pred cCCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhcccc-ccCeEEEEe
Q psy6053 100 FTGKTLFMTGA--SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQK-IIDKVLPIS 176 (614)
Q Consensus 100 ~~~~~VLITGa--TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~-~~~~v~~v~ 176 (614)
++||+++|||| +.-||..+++.|.+.|.+ |++ .|.... .+++..-.+..-++..+.. +.. ..+....+.
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~---Vv~-~~~~~~---l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAE---ILV-GTWVPA---LNIFETSLRRGKFDESRKL-PDGSLMEITKVYP 78 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE---EEE-EeCcch---hhHHHHhhhccccchhhhc-ccccccCcCeeee
Confidence 67999999999 789999999999999976 555 554322 1222211111100111100 000 011245678
Q ss_pred CCC--CCCC-C-----------CCCHHHHHHHhc-------cccEEEEccccc-----Ch----hHHHHHHHHHhHHHHH
Q psy6053 177 GDA--EADE-L-----------AIKESDRQLLAS-------EVDIMIHGAATI-----RF----DEALKKAVLLNTRGTK 226 (614)
Q Consensus 177 gDl--~~~~-l-----------GLs~~~~~~l~~-------~vd~ViH~AA~v-----~~----~~~~~~~~~~Nv~gt~ 226 (614)
+|+ ++++ + +-++++++.+++ .+|++||+||.. .+ .+.++..+++|+.|+.
T Consensus 79 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~ 158 (303)
T PLN02730 79 LDAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFV 158 (303)
T ss_pred cceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHH
Confidence 888 3332 0 011224444443 489999999631 11 3567788999999999
Q ss_pred HHHHHHHH-cCCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHH
Q psy6053 227 MMLSLAKE-MKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSE 305 (614)
Q Consensus 227 ~ll~la~~-~~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE 305 (614)
.+.+.+.. |..-.++|++||..+.... | .+...|+.||+..+
T Consensus 159 ~l~~~~~p~m~~~G~II~isS~a~~~~~----------p---------------------------~~~~~Y~asKaAl~ 201 (303)
T PLN02730 159 SLLQHFGPIMNPGGASISLTYIASERII----------P---------------------------GYGGGMSSAKAALE 201 (303)
T ss_pred HHHHHHHHHHhcCCEEEEEechhhcCCC----------C---------------------------CCchhhHHHHHHHH
Confidence 98887765 2122589999997542210 0 00126999999888
Q ss_pred HHHHHHhh-----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHH
Q psy6053 306 GLVVEAMN-----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIF 380 (614)
Q Consensus 306 ~lv~~~~~-----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii 380 (614)
.+.+..+. +|+.+..+-||.|-.+....+ .............. +- ..+...++++++++
T Consensus 202 ~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~-------~~~~~~~~~~~~~~-------pl--~r~~~peevA~~~~ 265 (303)
T PLN02730 202 SDTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAI-------GFIDDMIEYSYANA-------PL--QKELTADEVGNAAA 265 (303)
T ss_pred HHHHHHHHHhCcCCCeEEEEEeeCCccCchhhcc-------cccHHHHHHHHhcC-------CC--CCCcCHHHHHHHHH
Confidence 88766554 378899999987744322110 00001111111100 10 12345688999998
Q ss_pred HHHHhhhhcCCCCccEEEeccC
Q psy6053 381 VAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 381 ~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.++..... ...+.++.+.++
T Consensus 266 fLaS~~a~--~itG~~l~vdGG 285 (303)
T PLN02730 266 FLASPLAS--AITGATIYVDNG 285 (303)
T ss_pred HHhCcccc--CccCCEEEECCC
Confidence 88754321 124566666544
|
|
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-07 Score=90.54 Aligned_cols=205 Identities=18% Similarity=0.239 Sum_probs=126.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
..++||||||+-.||--|+++|+.. +++..+....|..... .+.++.. .. ..+++++++.|++
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~-~~i~~iiat~r~~e~a--~~~l~~k-------------~~-~d~rvHii~Ldvt 64 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKD-KGIEVIIATARDPEKA--ATELALK-------------SK-SDSRVHIIQLDVT 64 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcC-CCcEEEEEecCChHHh--hHHHHHh-------------hc-cCCceEEEEEecc
Confidence 4578999999999999999999977 6766666666644322 1212211 01 4578999999999
Q ss_pred CCCCCCCHHHHHHHh---------ccccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHH----HHHHcCCCc
Q psy6053 181 ADELAIKESDRQLLA---------SEVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLS----LAKEMKHLE 239 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~---------~~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~----la~~~~~~k 239 (614)
..+ .++.+. ++.|+.+++||...- ...+-..+++|+.|+..+.+ +.++. .-+
T Consensus 65 ~de------S~~~~~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkka-as~ 137 (249)
T KOG1611|consen 65 CDE------SIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKA-ASK 137 (249)
T ss_pred cHH------HHHHHHHHHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHH-hhc
Confidence 865 444443 357999999996421 23355678999998765544 33332 223
Q ss_pred -----------eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHH
Q psy6053 240 -----------LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLV 308 (614)
Q Consensus 240 -----------~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv 308 (614)
.+|++||..+.-.. ..+.+ -..|..||.+--...
T Consensus 138 ~~gd~~s~~raaIinisS~~~s~~~------~~~~~-----------------------------~~AYrmSKaAlN~f~ 182 (249)
T KOG1611|consen 138 VSGDGLSVSRAAIINISSSAGSIGG------FRPGG-----------------------------LSAYRMSKAALNMFA 182 (249)
T ss_pred ccCCcccccceeEEEeeccccccCC------CCCcc-----------------------------hhhhHhhHHHHHHHH
Confidence 78989988543111 01111 158999999888777
Q ss_pred HHHhh--C--CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHH
Q psy6053 309 VEAMN--N--GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIW 384 (614)
Q Consensus 309 ~~~~~--~--glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~ 384 (614)
+...- + ++=++.+.|| |+..-.| +.-..+.|++-+..++....
T Consensus 183 ksls~dL~~~~ilv~sihPG------------wV~TDMg---------------------g~~a~ltveeSts~l~~~i~ 229 (249)
T KOG1611|consen 183 KSLSVDLKDDHILVVSIHPG------------WVQTDMG---------------------GKKAALTVEESTSKLLASIN 229 (249)
T ss_pred HHhhhhhcCCcEEEEEecCC------------eEEcCCC---------------------CCCcccchhhhHHHHHHHHH
Confidence 76654 2 3334445555 4433211 11223566777777777776
Q ss_pred hhhhcCCCCccEEEe
Q psy6053 385 AYLSQKEHRQSIVHL 399 (614)
Q Consensus 385 ~~~~~~~~~~~vyni 399 (614)
+-.. ..+|..||.
T Consensus 230 kL~~--~hnG~ffn~ 242 (249)
T KOG1611|consen 230 KLKN--EHNGGFFNR 242 (249)
T ss_pred hcCc--ccCcceEcc
Confidence 5432 125666665
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-08 Score=90.83 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=138.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
...+...||||+.-||+++...|.+.|.. |.+..+.+.. +++--..+ |. . ..-..+.+|+
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Gar---v~v~dl~~~~--A~ata~~L-------------~g-~-~~h~aF~~DV 71 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGAR---VAVADLDSAA--AEATAGDL-------------GG-Y-GDHSAFSCDV 71 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcE---EEEeecchhh--HHHHHhhc-------------CC-C-Cccceeeecc
Confidence 45678999999999999999999999876 5555555433 22211111 11 1 2345679999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---C--CCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---K--HLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~--~~k~ 240 (614)
+++. +.+..++ .++++++||+..+. .+.|++.+.+|..|+..+-+++.+. . +.-+
T Consensus 72 S~a~------~v~~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~s 145 (256)
T KOG1200|consen 72 SKAH------DVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLS 145 (256)
T ss_pred CcHH------HHHHHHHHHHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCce
Confidence 9976 5555433 57999999998753 4678899999999998888877653 1 2238
Q ss_pred EEEEeCceec-cCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEE
Q psy6053 241 FVHISTAYCH-LQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCL 319 (614)
Q Consensus 241 ~V~vST~~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~ 319 (614)
+|.+||.-+- ++.. ...|.. ....--++||.+|..+.+ +++++.
T Consensus 146 IiNvsSIVGkiGN~G---QtnYAA----------------------------sK~GvIgftktaArEla~----knIrvN 190 (256)
T KOG1200|consen 146 IINVSSIVGKIGNFG---QTNYAA----------------------------SKGGVIGFTKTAARELAR----KNIRVN 190 (256)
T ss_pred EEeehhhhccccccc---chhhhh----------------------------hcCceeeeeHHHHHHHhh----cCceEe
Confidence 9999998432 1111 011100 001345667776655533 489999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.+-||.|-.+-.+.+ |..+...+....+..-+| ..+++|+.+..++..... -..+..+.+
T Consensus 191 ~VlPGFI~tpMT~~m---------p~~v~~ki~~~iPmgr~G---------~~EevA~~V~fLAS~~ss--YiTG~t~ev 250 (256)
T KOG1200|consen 191 VVLPGFIATPMTEAM---------PPKVLDKILGMIPMGRLG---------EAEEVANLVLFLASDASS--YITGTTLEV 250 (256)
T ss_pred EeccccccChhhhhc---------CHHHHHHHHccCCccccC---------CHHHHHHHHHHHhccccc--cccceeEEE
Confidence 999999977654432 223444444433322222 357899998888743221 123455555
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
+.+
T Consensus 251 tGG 253 (256)
T KOG1200|consen 251 TGG 253 (256)
T ss_pred ecc
Confidence 544
|
|
| >KOG3019|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-08 Score=93.56 Aligned_cols=157 Identities=13% Similarity=0.043 Sum_probs=103.9
Q ss_pred HHHHhHHHHHHHHHHHHHcCCC-ceEEEEeCceeccCC--cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCC
Q psy6053 217 AVLLNTRGTKMMLSLAKEMKHL-ELFVHISTAYCHLQE--KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEF 293 (614)
Q Consensus 217 ~~~~Nv~gt~~ll~la~~~~~~-k~~V~vST~~~~~~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 293 (614)
....-+..|..+.++....+.. +.+|.+|..+++-+. ...+|+...--.
T Consensus 100 v~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~qgf---------------------------- 151 (315)
T KOG3019|consen 100 VKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVHQGF---------------------------- 151 (315)
T ss_pred hhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccccccCCh----------------------------
Confidence 3444455688888888887654 489999988665442 244444211110
Q ss_pred CCchhhhHHHH--HHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCcccccee
Q psy6053 294 PNSYAYTKCLS--EGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLP 371 (614)
Q Consensus 294 pn~Y~~SK~~a--E~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vp 371 (614)
.| .|.... |.......+ ..+++++|.|.|.|.... ..+..-+...++.|.. .|++++.+.|||
T Consensus 152 --d~-~srL~l~WE~aA~~~~~-~~r~~~iR~GvVlG~gGG--------a~~~M~lpF~~g~GGP---lGsG~Q~fpWIH 216 (315)
T KOG3019|consen 152 --DI-LSRLCLEWEGAALKANK-DVRVALIRIGVVLGKGGG--------ALAMMILPFQMGAGGP---LGSGQQWFPWIH 216 (315)
T ss_pred --HH-HHHHHHHHHHHhhccCc-ceeEEEEEEeEEEecCCc--------chhhhhhhhhhccCCc---CCCCCeeeeeee
Confidence 11 111111 222233333 789999999999998531 1111112233444432 478999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhcccc
Q psy6053 372 VDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTE 423 (614)
Q Consensus 372 VDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~~ 423 (614)
+||+++.+..+++++. -.++.|-+.+ ++.+..|+.+.+.+.++++
T Consensus 217 v~DL~~li~~ale~~~-----v~GViNgvAP--~~~~n~Ef~q~lg~aL~Rp 261 (315)
T KOG3019|consen 217 VDDLVNLIYEALENPS-----VKGVINGVAP--NPVRNGEFCQQLGSALSRP 261 (315)
T ss_pred hHHHHHHHHHHHhcCC-----CCceecccCC--CccchHHHHHHHHHHhCCC
Confidence 9999999999998865 5679999998 9999999999999997763
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-08 Score=123.65 Aligned_cols=181 Identities=10% Similarity=0.062 Sum_probs=120.2
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC--------HHHHHHHHHh----------------
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN--------ARQRIEELFA---------------- 153 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~--------~~~Rl~~~~~---------------- 153 (614)
.+-+++++|||||+|.||..++++|+++|. .+|+++.|+..... ....++....
T Consensus 1993 ~l~~g~vvLVTGGarGIG~aiA~~LA~~~g--a~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~ 2070 (2582)
T TIGR02813 1993 ALNSDDVFLVTGGAKGVTFECALELAKQCQ--AHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVD 2070 (2582)
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHhcC--CEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhh
Confidence 345689999999999999999999998842 25888999731100 0011111000
Q ss_pred ---------ChhhHHhhhhccccccCeEEEEeCCCCCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------h
Q psy6053 154 ---------SPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLAS------EVDIMIHGAATIRF-------D 211 (614)
Q Consensus 154 ---------~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~ 211 (614)
..+-..+. +... ...++.++.+|++++. +++.+++ .+|+|||+||.... .
T Consensus 2071 ~~~~~~~~~~ei~~~la-~l~~-~G~~v~y~~~DVtD~~------av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~ 2142 (2582)
T TIGR02813 2071 ALVRPVLSSLEIAQALA-AFKA-AGASAEYASADVTNSV------SVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTL 2142 (2582)
T ss_pred hcccccchhHHHHHHHH-HHHh-cCCcEEEEEccCCCHH------HHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCH
Confidence 00000010 0011 2356889999999976 5555543 48999999996431 3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcC
Q psy6053 212 EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLG 291 (614)
Q Consensus 212 ~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~ 291 (614)
+.++..+++|+.|+.++++.+.. ...+.+|++||..+.....
T Consensus 2143 e~f~~v~~~nv~G~~~Ll~al~~-~~~~~IV~~SSvag~~G~~------------------------------------- 2184 (2582)
T TIGR02813 2143 EEFNAVYGTKVDGLLSLLAALNA-ENIKLLALFSSAAGFYGNT------------------------------------- 2184 (2582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEechhhcCCCC-------------------------------------
Confidence 56778899999999999999887 3667899999986532110
Q ss_pred CCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecceee
Q psy6053 292 EFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSIII 327 (614)
Q Consensus 292 ~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~I~ 327 (614)
.-..|+.+|..-+.+...... .+.++..+.||.+-
T Consensus 2185 -gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wd 2221 (2582)
T TIGR02813 2185 -GQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWD 2221 (2582)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeec
Confidence 014699999888877766655 35777888887553
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=88.03 Aligned_cols=163 Identities=17% Similarity=0.254 Sum_probs=112.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..|.+||||||+..||..|++++++.|.+ |+.-.|. ++||++..+ ..+.+....+|+
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~---VIi~gR~------e~~L~e~~~--------------~~p~~~t~v~Dv 59 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNT---VIICGRN------EERLAEAKA--------------ENPEIHTEVCDV 59 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCE---EEEecCc------HHHHHHHHh--------------cCcchheeeecc
Confidence 35789999999999999999999999866 6666675 577776533 234577788999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC---hh------HHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR---FD------EALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~---~~------~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
.|.+ .++++.+ ..+++|++||..+ |. +...+-+.+|..++.+|..+...+ +.-..
T Consensus 60 ~d~~------~~~~lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~ 133 (245)
T COG3967 60 ADRD------SRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEAT 133 (245)
T ss_pred cchh------hHHHHHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCce
Confidence 9876 4444443 5799999999753 22 223456789999999888766542 12346
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|.|||.-++.+... + -.|..||+.-...-...++ .++
T Consensus 134 IInVSSGLafvPm~~------------------------------~--------PvYcaTKAaiHsyt~aLR~Qlk~t~v 175 (245)
T COG3967 134 IINVSSGLAFVPMAS------------------------------T--------PVYCATKAAIHSYTLALREQLKDTSV 175 (245)
T ss_pred EEEeccccccCcccc------------------------------c--------ccchhhHHHHHHHHHHHHHHhhhcce
Confidence 899999865443210 0 2688888876554444333 367
Q ss_pred CEEEeecceeecc
Q psy6053 317 PCLMLRPSIIIPV 329 (614)
Q Consensus 317 p~~IvRp~~I~g~ 329 (614)
.+.=+-|+.|-.+
T Consensus 176 eVIE~~PP~V~t~ 188 (245)
T COG3967 176 EVIELAPPLVDTT 188 (245)
T ss_pred EEEEecCCceecC
Confidence 7777778888554
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-08 Score=100.12 Aligned_cols=162 Identities=10% Similarity=0.007 Sum_probs=104.8
Q ss_pred HHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCCCCCHHHHHHHhc-
Q psy6053 118 LLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLAS- 196 (614)
Q Consensus 118 Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~- 196 (614)
++++|++.|.+ |+++.|..... + ...++.+|+++.+ +++.+++
T Consensus 1 ~a~~l~~~G~~---Vv~~~r~~~~~---~------------------------~~~~~~~Dl~~~~------~v~~~~~~ 44 (241)
T PRK12428 1 TARLLRFLGAR---VIGVDRREPGM---T------------------------LDGFIQADLGDPA------SIDAAVAA 44 (241)
T ss_pred ChHHHHhCCCE---EEEEeCCcchh---h------------------------hhHhhcccCCCHH------HHHHHHHH
Confidence 46788999876 88888875321 0 1134688998865 6666665
Q ss_pred ---cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCceeccCCc--ccccccCCCCCChhHH
Q psy6053 197 ---EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHISTAYCHLQEK--VLYEKPYPPPTDPHKL 270 (614)
Q Consensus 197 ---~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~~~~~~~~--~i~E~~~~~p~~~~~~ 270 (614)
++|+|||+||... ..+++..+++|+.|+..+++++... .+-.++|++||..+++... +..|..
T Consensus 45 ~~~~iD~li~nAG~~~-~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~---------- 113 (241)
T PRK12428 45 LPGRIDALFNIAGVPG-TAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKAL---------- 113 (241)
T ss_pred hcCCCeEEEECCCCCC-CCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhh----------
Confidence 5899999999754 3467788999999999999998762 2236899999997654211 111100
Q ss_pred HHHHhhcc-hhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh-h----CCCCEEEeecceeeccc
Q psy6053 271 IERVEMMS-EDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM-N----NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 271 ~~~~~~~~-~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~-~----~glp~~IvRp~~I~g~~ 330 (614)
.+..+ ++.+.... .........|+.||+..+.+.+..+ . +|+.+..++||.|.++.
T Consensus 114 ---~~~~~~~~~~~~~~-~~~~~~~~~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~ 175 (241)
T PRK12428 114 ---AATASFDEGAAWLA-AHPVALATGYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPI 175 (241)
T ss_pred ---hccchHHHHHHhhh-ccCCCcccHHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcc
Confidence 00000 00000000 0001122689999999998887665 2 58999999999987663
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.6e-08 Score=96.04 Aligned_cols=212 Identities=18% Similarity=0.194 Sum_probs=137.3
Q ss_pred ccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCCCC
Q psy6053 109 GAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAI 186 (614)
Q Consensus 109 GaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lGL 186 (614)
|++ +-||..++++|++.|.+ |++..|+... ..+.++++. ++.+ .+ ++.+|+++++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~---V~~~~~~~~~--~~~~~~~l~---------~~~~----~~--~~~~D~~~~~--- 57 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGAN---VILTDRNEEK--LADALEELA---------KEYG----AE--VIQCDLSDEE--- 57 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEE---EEEEESSHHH--HHHHHHHHH---------HHTT----SE--EEESCTTSHH---
T ss_pred CCCCCCChHHHHHHHHHHCCCE---EEEEeCChHH--HHHHHHHHH---------HHcC----Cc--eEeecCcchH---
Confidence 666 89999999999999876 8888887532 122333332 2222 23 5999999865
Q ss_pred CHHHHHHHh--------ccccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeC
Q psy6053 187 KESDRQLLA--------SEVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHIST 246 (614)
Q Consensus 187 s~~~~~~l~--------~~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST 246 (614)
+++.++ .++|++||+|+.... .+.+...+++|+.+...+++.+... +.-.++|++||
T Consensus 58 ---~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 58 ---SVEALFDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp ---HHHHHHHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---HHHHHHHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 666653 468999999986543 2456778999999999998887552 22368999998
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-----CCCCEEEe
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-----NGMPCLML 321 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-----~glp~~Iv 321 (614)
........ ....|+.+|+.-+.+++..+. +|+++..+
T Consensus 135 ~~~~~~~~--------------------------------------~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V 176 (241)
T PF13561_consen 135 IAAQRPMP--------------------------------------GYSAYSASKAALEGLTRSLAKELAPKKGIRVNAV 176 (241)
T ss_dssp GGGTSBST--------------------------------------TTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEE
T ss_pred hhhcccCc--------------------------------------cchhhHHHHHHHHHHHHHHHHHhccccCeeeeee
Confidence 86432210 014799999988888876544 48999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
.||.|-.+... .......+.....+. .+- .-+...+|+|++++.++..... --.+++..+.+
T Consensus 177 ~pG~i~t~~~~-------~~~~~~~~~~~~~~~-------~pl--~r~~~~~evA~~v~fL~s~~a~--~itG~~i~vDG 238 (241)
T PF13561_consen 177 SPGPIETPMTE-------RIPGNEEFLEELKKR-------IPL--GRLGTPEEVANAVLFLASDAAS--YITGQVIPVDG 238 (241)
T ss_dssp EESSBSSHHHH-------HHHTHHHHHHHHHHH-------STT--SSHBEHHHHHHHHHHHHSGGGT--TGTSEEEEEST
T ss_pred cccceeccchh-------ccccccchhhhhhhh-------hcc--CCCcCHHHHHHHHHHHhCcccc--CccCCeEEECC
Confidence 99987543210 000011122221111 011 1245789999999988865532 13677777765
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
|
T Consensus 239 G 239 (241)
T PF13561_consen 239 G 239 (241)
T ss_dssp T
T ss_pred C
Confidence 5
|
... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-07 Score=92.29 Aligned_cols=242 Identities=10% Similarity=0.033 Sum_probs=128.2
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCC------CcCHHHHHHHHH--hChh---hHHhhhhccc
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKK------GKNARQRIEELF--ASPL---FNLLKSVHGQ 166 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~------~~~~~~Rl~~~~--~~~~---f~~l~~~~p~ 166 (614)
++||+++||||+ .-||+++++.|.++|.+ |++..|... ..+. ++..+.. .... +.+.... ..
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~---Vvv~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~-~~ 80 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGAT---ILVGTWVPIYKIFSQSLEL-GKFDASRKLSNGSLLTFAKIYPM-DA 80 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCE---EEEEeccchhhhhhhhccc-ccccccccccccchhhhhhHHHh-hh
Confidence 468999999994 78999999999999976 665544310 0000 0000000 0000 0000000 00
Q ss_pred cccCeEEEEeCCCCCCCC--CCCHHHHHHHh-------ccccEEEEccccc-----Ch----hHHHHHHHHHhHHHHHHH
Q psy6053 167 KIIDKVLPISGDAEADEL--AIKESDRQLLA-------SEVDIMIHGAATI-----RF----DEALKKAVLLNTRGTKMM 228 (614)
Q Consensus 167 ~~~~~v~~v~gDl~~~~l--GLs~~~~~~l~-------~~vd~ViH~AA~v-----~~----~~~~~~~~~~Nv~gt~~l 228 (614)
.....+-+..|+.+... -+++++.+.++ .++|++||+||.. .+ .+.++..+++|+.|+.++
T Consensus 81 -d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l 159 (299)
T PRK06300 81 -SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSL 159 (299)
T ss_pred -hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHH
Confidence 00112223333333110 12222333333 3589999999742 12 245677899999999999
Q ss_pred HHHHHH-cCCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHH
Q psy6053 229 LSLAKE-MKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGL 307 (614)
Q Consensus 229 l~la~~-~~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~l 307 (614)
.+++.. +..-.+++.+||..+.... | .....|+.||+.-+.+
T Consensus 160 ~~a~~p~m~~~G~ii~iss~~~~~~~----------p---------------------------~~~~~Y~asKaAl~~l 202 (299)
T PRK06300 160 LSHFGPIMNPGGSTISLTYLASMRAV----------P---------------------------GYGGGMSSAKAALESD 202 (299)
T ss_pred HHHHHHHhhcCCeEEEEeehhhcCcC----------C---------------------------CccHHHHHHHHHHHHH
Confidence 988875 2222478888886542111 0 0002599999988887
Q ss_pred HHHHhh-----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHH
Q psy6053 308 VVEAMN-----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVA 382 (614)
Q Consensus 308 v~~~~~-----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~ 382 (614)
.+..+. +|+.+..+.||.|-.+... ....+......... .. + .-.....+++++++..+
T Consensus 203 t~~la~el~~~~gIrVn~V~PG~v~T~~~~-------~~~~~~~~~~~~~~-~~---p-----~~r~~~peevA~~v~~L 266 (299)
T PRK06300 203 TKVLAWEAGRRWGIRVNTISAGPLASRAGK-------AIGFIERMVDYYQD-WA---P-----LPEPMEAEQVGAAAAFL 266 (299)
T ss_pred HHHHHHHhCCCCCeEEEEEEeCCccChhhh-------cccccHHHHHHHHh-cC---C-----CCCCcCHHHHHHHHHHH
Confidence 766553 3899999999987443211 00000111111111 00 0 01234679999998887
Q ss_pred HHhhhhcCCCCccEEEeccC
Q psy6053 383 IWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 383 ~~~~~~~~~~~~~vyni~~~ 402 (614)
+..... ...+.++.+.++
T Consensus 267 ~s~~~~--~itG~~i~vdGG 284 (299)
T PRK06300 267 VSPLAS--AITGETLYVDHG 284 (299)
T ss_pred hCcccc--CCCCCEEEECCC
Confidence 754321 125666666544
|
|
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=88.30 Aligned_cols=203 Identities=21% Similarity=0.239 Sum_probs=127.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
.+|+||||+--+|+.++..+.++|.+ |.++.|+.+......+--++.. ....|.+..+|+.+.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~---Vti~ar~~~kl~~a~~~l~l~~--------------~~~~v~~~S~d~~~Y 96 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGAD---VTITARSGKKLLEAKAELELLT--------------QVEDVSYKSVDVIDY 96 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCc---eEEEeccHHHHHHHHhhhhhhh--------------ccceeeEeccccccH
Confidence 58999999999999999999999988 8999998765332221111100 223477889999765
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccC---h----hHHHHHHHHHhHHHHHHHHHHHHH-cCCCc---eEEEE
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIR---F----DEALKKAVLLNTRGTKMMLSLAKE-MKHLE---LFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~---~----~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k---~~V~v 244 (614)
+ ....+++ -+|.+|||||..- | .+..+..+++|..||.+++..+.. |+..+ +++.+
T Consensus 97 ~------~v~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~v 170 (331)
T KOG1210|consen 97 D------SVSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILV 170 (331)
T ss_pred H------HHHHHHhhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEe
Confidence 5 4444443 3699999999631 1 244567899999999999877654 33333 78888
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHH----HHHHHHHHHhhCCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKC----LSEGLVVEAMNNGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~----~aE~lv~~~~~~glp~~I 320 (614)
||..+.-.- | .-++|+.+|. ++|.+-++...+|+.++.
T Consensus 171 sS~~a~~~i-------~-------------------------------GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~ 212 (331)
T KOG1210|consen 171 SSQLAMLGI-------Y-------------------------------GYSAYSPSKFALRGLAEALRQELIKYGVHVTL 212 (331)
T ss_pred hhhhhhcCc-------c-------------------------------cccccccHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 887442110 0 0146777766 555555555446888888
Q ss_pred eecceeecccCCCCcccc-CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 321 LRPSIIIPVWREPLPGWT-DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~-d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
+-|+.+-.+ |+. +|..-|. ...+ .+...+.++-+++|.+++.-+..
T Consensus 213 ~~P~~~~tp------GfE~En~tkP~----------~t~i---i~g~ss~~~~e~~a~~~~~~~~r 259 (331)
T KOG1210|consen 213 YYPPDTLTP------GFERENKTKPE----------ETKI---IEGGSSVIKCEEMAKAIVKGMKR 259 (331)
T ss_pred EcCCCCCCC------ccccccccCch----------heee---ecCCCCCcCHHHHHHHHHhHHhh
Confidence 888766444 221 1211111 0011 12223458899999998776643
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-07 Score=85.27 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=106.8
Q ss_pred CcEEEEecc-cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGA-SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGa-TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+.|||||+ +|.||-+|..++.+.|+. |++..|.-. +..++. ...++.+..-|++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~---V~AtaR~~e------~M~~L~---------------~~~gl~~~kLDV~ 62 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYL---VYATARRLE------PMAQLA---------------IQFGLKPYKLDVS 62 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeE---EEEEccccc------hHhhHH---------------HhhCCeeEEeccC
Confidence 578999986 499999999999999987 899888742 222221 2346888999999
Q ss_pred CCCCCCCHHHHHHHhc--------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS--------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~--------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~ 243 (614)
+++ ...+... +.|..++.||..- ..+..+..+++||.|..++.++...+ +.-..+|+
T Consensus 63 ~~~------~V~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVn 136 (289)
T KOG1209|consen 63 KPE------EVVTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVN 136 (289)
T ss_pred ChH------HHHHHHHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEE
Confidence 987 4444332 4699999998531 13456678999999987777665542 12247999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+.|..+..+. +|...|+.||+.-..+.+..+- .|+.++
T Consensus 137 vgSl~~~vpf--------------------------------------pf~~iYsAsKAAihay~~tLrlEl~PFgv~Vi 178 (289)
T KOG1209|consen 137 VGSLAGVVPF--------------------------------------PFGSIYSASKAAIHAYARTLRLELKPFGVRVI 178 (289)
T ss_pred ecceeEEecc--------------------------------------chhhhhhHHHHHHHHhhhhcEEeeeccccEEE
Confidence 9998654321 2336899999876665544332 355555
Q ss_pred Eeeccee
Q psy6053 320 MLRPSII 326 (614)
Q Consensus 320 IvRp~~I 326 (614)
.+-+|.|
T Consensus 179 n~itGGv 185 (289)
T KOG1209|consen 179 NAITGGV 185 (289)
T ss_pred Eecccce
Confidence 5555544
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.6e-07 Score=81.91 Aligned_cols=205 Identities=17% Similarity=0.256 Sum_probs=133.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+..|+.|++||+.-.||+.++..|...|.+ |++..|.+ +.|..+. ++.| ..|+++.+|
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~---ViAvaR~~------a~L~sLV---------~e~p----~~I~Pi~~D 61 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQ---VIAVARNE------ANLLSLV---------KETP----SLIIPIVGD 61 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCE---EEEEecCH------HHHHHHH---------hhCC----cceeeeEec
Confidence 467999999999989999999999999866 88999974 3333332 2233 359999999
Q ss_pred CCCCCCCCCHHHHHHHhc---cccEEEEcccccC---h----hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceEEEE
Q psy6053 179 AEADELAIKESDRQLLAS---EVDIMIHGAATIR---F----DEALKKAVLLNTRGTKMMLSLAKEM----KHLELFVHI 244 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~---~----~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~V~v 244 (614)
++.-+ ...+++. -+|..++.||..- | .++++..+++|+++..++.++..+. .....+|.+
T Consensus 62 ls~we------a~~~~l~~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNv 135 (245)
T KOG1207|consen 62 LSAWE------ALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNV 135 (245)
T ss_pred ccHHH------HHHHhhcccCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEe
Confidence 99733 4444444 3699999998532 2 2344556788999988887764331 122469999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+...- +. ...|..||..-+.+-+..+- +.+++..
T Consensus 136 SSqas~R~~---~n-----------------------------------HtvYcatKaALDmlTk~lAlELGp~kIRVNs 177 (245)
T KOG1207|consen 136 SSQASIRPL---DN-----------------------------------HTVYCATKAALDMLTKCLALELGPQKIRVNS 177 (245)
T ss_pred cchhccccc---CC-----------------------------------ceEEeecHHHHHHHHHHHHHhhCcceeEeec
Confidence 998653211 11 15799999987776655433 6789999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
+-|..|..... ...|.|-.. .+..+..++- --|.-||.|++++..+..+
T Consensus 178 VNPTVVmT~MG--~dnWSDP~K---------~k~mL~riPl-----~rFaEV~eVVnA~lfLLSd 226 (245)
T KOG1207|consen 178 VNPTVVMTDMG--RDNWSDPDK---------KKKMLDRIPL-----KRFAEVDEVVNAVLFLLSD 226 (245)
T ss_pred cCCeEEEeccc--ccccCCchh---------ccchhhhCch-----hhhhHHHHHHhhheeeeec
Confidence 99999876532 224544210 0001111111 1255688999988776644
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=90.44 Aligned_cols=125 Identities=12% Similarity=0.020 Sum_probs=88.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
..++++|.||||+|.+|+.+...|..++. ..++.++++.+....+. -+.+ .... ....+
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di~~~~g~a~-Dl~~-----------------~~~~--~~v~~ 63 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDIVGAPGVAA-DLSH-----------------IDTP--AKVTG 63 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEecCCCccccc-chhh-----------------cCcC--ceEEE
Confidence 35677999999999999999998886542 35688888832111111 0100 1111 22334
Q ss_pred CCCCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceecc
Q psy6053 179 AEADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHL 251 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~ 251 (614)
.++++ ++.+.++++|+|||+||...- ..+..+.+..|+.+++++++.+++. +++++|.++|..+..
T Consensus 64 ~td~~------~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 64 YADGE------LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred ecCCC------chHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 44443 445677899999999998653 3556788999999999999999995 999999999986543
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.5e-07 Score=93.10 Aligned_cols=184 Identities=13% Similarity=0.013 Sum_probs=119.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++|.||||+|.+|+.++..|..++. ..++.++++......+. ++.+ ..... ...+++.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~el~L~Di~~~~g~a~----Dl~~--------------~~~~~--~i~~~~~ 76 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPL-VSELHLYDIANTPGVAA----DVSH--------------INTPA--QVRGFLG 76 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEecCCCCeeEc----hhhh--------------CCcCc--eEEEEeC
Confidence 36899999999999999999986643 35688888765111010 1100 11111 1123222
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKP 260 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~ 260 (614)
.. ++...++++|+|||+||..+- ..+..+.+..|+..++++.+.+++. +.+++++++|-=+......+.+.
T Consensus 77 ~~------d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~~~~i~t~~- 148 (323)
T PLN00106 77 DD------QLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNSTVPIAAEV- 148 (323)
T ss_pred CC------CHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHHHH-
Confidence 22 567778999999999998654 4567788999999999999999995 78999999987443211111100
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcC-CCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC-CCCccc
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLG-EFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR-EPLPGW 337 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~-~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~-~p~~gw 337 (614)
+.+ ..+ +.-+.||.++.-.+++-...++ .|++..-++--++.+... +-+|-|
T Consensus 149 ---------------------~~~----~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~ 203 (323)
T PLN00106 149 ---------------------LKK----AGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLL 203 (323)
T ss_pred ---------------------HHH----cCCCCcceEEEEecchHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeeh
Confidence 000 000 1125788888888888777777 688888887666655534 556666
Q ss_pred cC
Q psy6053 338 TD 339 (614)
Q Consensus 338 ~d 339 (614)
..
T Consensus 204 S~ 205 (323)
T PLN00106 204 SQ 205 (323)
T ss_pred hc
Confidence 53
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-06 Score=84.41 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=112.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
+=..|||||..||+..+++|.++|.+ |+++.|..+ ||+...+ |-.+...-.+..+..|.+++
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~n---vvLIsRt~~------KL~~v~k---------EI~~~~~vev~~i~~Dft~~ 111 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFN---VVLISRTQE------KLEAVAK---------EIEEKYKVEVRIIAIDFTKG 111 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCE---EEEEeCCHH------HHHHHHH---------HHHHHhCcEEEEEEEecCCC
Confidence 56899999999999999999999977 999999853 3332211 11110224588999999998
Q ss_pred CCCCCHHHHHHHhc-----cccEEEEcccccC-----h----hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEEEEe
Q psy6053 183 ELAIKESDRQLLAS-----EVDIMIHGAATIR-----F----DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFVHIS 245 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-----~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V~vS 245 (614)
+- +++.+.+ ++.+.||++|... | ...+++.+.+|+.++..+.+.... | .+-..+|++|
T Consensus 112 ~~-----~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~Ivnig 186 (312)
T KOG1014|consen 112 DE-----VYEKLLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIG 186 (312)
T ss_pred ch-----hHHHHHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEec
Confidence 72 4555443 4679999999754 1 113455678899887766665443 1 2334789999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHH----HHHHHHHhhCCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLS----EGLVVEAMNNGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~a----E~lv~~~~~~glp~~Iv 321 (614)
|..+.-+. |. -..|+.||..- ..+-.++..+|+.+-.+
T Consensus 187 S~ag~~p~----------p~----------------------------~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v 228 (312)
T KOG1014|consen 187 SFAGLIPT----------PL----------------------------LSVYSASKAFVDFFSRCLQKEYESKGIFVQSV 228 (312)
T ss_pred cccccccC----------hh----------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEe
Confidence 98653211 10 15788888844 44444555579999999
Q ss_pred ecceeecc
Q psy6053 322 RPSIIIPV 329 (614)
Q Consensus 322 Rp~~I~g~ 329 (614)
=|..|.+.
T Consensus 229 ~p~~VaTk 236 (312)
T KOG1014|consen 229 IPYLVATK 236 (312)
T ss_pred ehhheecc
Confidence 89888665
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=82.82 Aligned_cols=104 Identities=13% Similarity=0.249 Sum_probs=72.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+++|||||||+|. ++++|++.|++ |.+..|++. +.+++.. ..+ ...++.++.+|++++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~---V~v~~R~~~------~~~~l~~---------~l~--~~~~i~~~~~Dv~d~ 59 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFH---VSVIARREV------KLENVKR---------EST--TPESITPLPLDYHDD 59 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCE---EEEEECCHH------HHHHHHH---------Hhh--cCCcEEEEEccCCCH
Confidence 57999999999876 99999999886 777788632 2222110 001 124688899999997
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCc----eEEEEeCcee
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLE----LFVHISTAYC 249 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k----~~V~vST~~~ 249 (614)
+ ++..+++ .+|++|+. +.+.++.++.++|++. +++ +|+|+=...+
T Consensus 60 ~------sv~~~i~~~l~~~g~id~lv~~---------------vh~~~~~~~~~~~~~~-gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 60 D------ALKLAIKSTIEKNGPFDLAVAW---------------IHSSAKDALSVVCREL-DGSSETYRLFHVLGSAA 115 (177)
T ss_pred H------HHHHHHHHHHHHcCCCeEEEEe---------------ccccchhhHHHHHHHH-ccCCCCceEEEEeCCcC
Confidence 6 6666554 34666643 3455778999999995 888 8888865543
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.7e-06 Score=77.76 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=59.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++++.++||||+|.+|..+++.|++.|.+ |++..|+... ..+-.+++ .. ...++.++.+|+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~---V~l~~r~~~~--~~~~~~~l---------~~-----~~~~~~~~~~Dl 74 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAK---VIVTDIDQES--GQATVEEI---------TN-----LGGEALFVSYDM 74 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCE---EEEEECCHHH--HHHHHHHH---------Hh-----cCCcEEEEEccC
Confidence 57899999999999999999999999865 8888876421 11111111 10 223567889999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccC
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIR 209 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~ 209 (614)
+++. +++.++ .++|++||+||...
T Consensus 75 ~~~~------~v~~~v~~~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 75 EKQG------DWQRVISITLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 9865 555543 35899999999643
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.6e-06 Score=85.22 Aligned_cols=120 Identities=19% Similarity=0.120 Sum_probs=75.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC----CccEEEEEEccCCCcCHHH-HHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSP----NVKKIYILMRQKKGKNARQ-RIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~----~v~~V~~LvR~~~~~~~~~-Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+.+|+||||+|++|++++..|+..+- +-..|++++|.+....+.. .+ + ..+-..+..
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~-D-----------------l~d~~~~~~ 63 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVM-E-----------------LQDCAFPLL 63 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceee-e-----------------hhhcccccc
Confidence 45799999999999999999988642 0126899998653210100 00 0 000000122
Q ss_pred CCCCCCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 177 GDAEADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
+|+.... ++.+.++++|+|||+||..+- .++..+.++.|+.-.+++.+..+++.....++.+-
T Consensus 64 ~~~~~~~------~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv 127 (325)
T cd01336 64 KSVVATT------DPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV 127 (325)
T ss_pred CCceecC------CHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3333222 566667899999999998754 34557788999999999988888753234444433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-06 Score=84.62 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=55.4
Q ss_pred cCCcEEEEeccc----------------ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhh
Q psy6053 100 FTGKTLFMTGAS----------------GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSV 163 (614)
Q Consensus 100 ~~~~~VLITGaT----------------GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~ 163 (614)
++||+||||+|. ||+|++|++.|+++|++ |+++.+........
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~---V~li~g~~~~~~~~------------------ 59 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAH---VIYLHGYFAEKPND------------------ 59 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCe---EEEEeCCCcCCCcc------------------
Confidence 368999999875 99999999999999987 77776643221000
Q ss_pred ccccccCeEEEEeCCCCCCCCCCCHHHHHHHhc--cccEEEEcccccChh
Q psy6053 164 HGQKIIDKVLPISGDAEADELAIKESDRQLLAS--EVDIMIHGAATIRFD 211 (614)
Q Consensus 164 ~p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~ 211 (614)
.+ ...++..+.+|....+ .+.++++ ++|+|||+||..+|.
T Consensus 60 ~~--~~~~~~~V~s~~d~~~------~l~~~~~~~~~D~VIH~AAvsD~~ 101 (229)
T PRK09620 60 IN--NQLELHPFEGIIDLQD------KMKSIITHEKVDAVIMAAAGSDWV 101 (229)
T ss_pred cC--CceeEEEEecHHHHHH------HHHHHhcccCCCEEEECcccccee
Confidence 00 1123445666332211 5566664 689999999998765
|
|
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.1e-05 Score=74.52 Aligned_cols=160 Identities=19% Similarity=0.135 Sum_probs=104.4
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.++.+||||++--||.-++..++..+.+. .+++..|.... .+++.+..||..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~-~r~g~~r~~a~---------------------------~~~L~v~~gd~~ 56 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEA-LRYGVARLLAE---------------------------LEGLKVAYGDDF 56 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHH-HHHhhhccccc---------------------------ccceEEEecCCc
Confidence 45779999999999999998888775552 23333333221 133444444443
Q ss_pred CCCCCCCH--HHHHHHhc-------cccEEEEcccccCh----------hHHHHHHHHHhHHHHHHHHHHHHHc-CC---
Q psy6053 181 ADELAIKE--SDRQLLAS-------EVDIMIHGAATIRF----------DEALKKAVLLNTRGTKMMLSLAKEM-KH--- 237 (614)
Q Consensus 181 ~~~lGLs~--~~~~~l~~-------~vd~ViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~--- 237 (614)
...-|.-. ..+..+.+ +-|+|||+||.... ...++..++.|+.+...+...+... ++
T Consensus 57 v~~~g~~~e~~~l~al~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~ 136 (253)
T KOG1204|consen 57 VHVVGDITEEQLLGALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPV 136 (253)
T ss_pred ceechHHHHHHHHHHHHhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCc
Confidence 32222111 11222221 46999999997532 3557889999999999888877652 12
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---C
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---N 314 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~ 314 (614)
.+-+|++||..+.-+-. ....|+-+|++-+++.+..+. .
T Consensus 137 ~~~vVnvSS~aav~p~~--------------------------------------~wa~yc~~KaAr~m~f~~lA~EEp~ 178 (253)
T KOG1204|consen 137 NGNVVNVSSLAAVRPFS--------------------------------------SWAAYCSSKAARNMYFMVLASEEPF 178 (253)
T ss_pred cCeEEEecchhhhcccc--------------------------------------HHHHhhhhHHHHHHHHHHHhhcCcc
Confidence 25689999986533211 015799999999999887765 3
Q ss_pred CCCEEEeeccee
Q psy6053 315 GMPCLMLRPSII 326 (614)
Q Consensus 315 glp~~IvRp~~I 326 (614)
++.+..++||.|
T Consensus 179 ~v~vl~~aPGvv 190 (253)
T KOG1204|consen 179 DVRVLNYAPGVV 190 (253)
T ss_pred ceeEEEccCCcc
Confidence 788999999987
|
|
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.1e-06 Score=74.68 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=108.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.+|-..+||||..-+|+.-.|.|..+|.. |..++-+.++..... ++ ...++.+...|+
T Consensus 7 ~kglvalvtggasglg~ataerlakqgas---v~lldlp~skg~~va--ke-----------------lg~~~vf~padv 64 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGAS---VALLDLPQSKGADVA--KE-----------------LGGKVVFTPADV 64 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCce---EEEEeCCcccchHHH--HH-----------------hCCceEEecccc
Confidence 45677899999999999999999999877 777877755432111 11 456899999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEccccc------C-------hhHHHHHHHHHhHHHHHHHHHHHHH-c---
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATI------R-------FDEALKKAVLLNTRGTKMMLSLAKE-M--- 235 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v------~-------~~~~~~~~~~~Nv~gt~~ll~la~~-~--- 235 (614)
+.+. +....+. ..|+.++||+.. + --++.+..+++|+.||.|++++... |
T Consensus 65 tsek------dv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~n 138 (260)
T KOG1199|consen 65 TSEK------DVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGEN 138 (260)
T ss_pred CcHH------HHHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCC
Confidence 9754 6655443 579999999962 1 1355667789999999999987653 2
Q ss_pred ---CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHH----HHH
Q psy6053 236 ---KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSE----GLV 308 (614)
Q Consensus 236 ---~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE----~lv 308 (614)
.+-.+=|.+-|+++..-...+.. ..|+.||...- -+.
T Consensus 139 epdq~gqrgviintasvaafdgq~gq------------------------------------aaysaskgaivgmtlpia 182 (260)
T KOG1199|consen 139 EPDQNGQRGVIINTASVAAFDGQTGQ------------------------------------AAYSASKGAIVGMTLPIA 182 (260)
T ss_pred CCCCCCcceEEEeeceeeeecCccch------------------------------------hhhhcccCceEeeechhh
Confidence 12234555666654332221111 46777776322 233
Q ss_pred HHHhhCCCCEEEeeccee
Q psy6053 309 VEAMNNGMPCLMLRPSII 326 (614)
Q Consensus 309 ~~~~~~glp~~IvRp~~I 326 (614)
+.....|++++.+-||..
T Consensus 183 rdla~~gir~~tiapglf 200 (260)
T KOG1199|consen 183 RDLAGDGIRFNTIAPGLF 200 (260)
T ss_pred hhcccCceEEEeeccccc
Confidence 444446888888888854
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.2e-05 Score=78.06 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=60.2
Q ss_pred EEEe-cccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 105 LFMT-GASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 105 VLIT-GaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
-+|| .+|||+|.+|++.|+++|++ |+++.|+.... +. ...++.++..+-.+..
T Consensus 18 R~itN~SSG~iG~aLA~~L~~~G~~---V~li~r~~~~~----------------------~~-~~~~v~~i~v~s~~~m 71 (229)
T PRK06732 18 RGITNHSTGQLGKIIAETFLAAGHE---VTLVTTKTAVK----------------------PE-PHPNLSIIEIENVDDL 71 (229)
T ss_pred eeecCccchHHHHHHHHHHHhCCCE---EEEEECccccc----------------------CC-CCCCeEEEEEecHHHH
Confidence 4555 47899999999999999987 77887753211 00 1134555554322210
Q ss_pred CCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHH
Q psy6053 184 LAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKE 234 (614)
Q Consensus 184 lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~ 234 (614)
.+.+.+.++++|+|||+||...+.. ....-..+...+.++.+++++
T Consensus 72 ----~~~l~~~~~~~DivIh~AAvsd~~~-~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 72 ----LETLEPLVKDHDVLIHSMAVSDYTP-VYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred ----HHHHHHHhcCCCEEEeCCccCCcee-hhhhhhhhhhhhhhhhhhhcc
Confidence 1234455678999999999876532 222223345555666666654
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.8e-06 Score=96.40 Aligned_cols=235 Identities=17% Similarity=0.181 Sum_probs=155.2
Q ss_pred cCCCCCCCCCceeeeeeccc---ccccchHHHHHHHhh---cccccc-----------ccCCCchhh-hhhhhHHHHHHH
Q psy6053 3 VPQAAPCTVGRYVTYHLSYL---CDFAIMFADLAIMFA---DLPIMF-----------ADFSLPLEF-IRCEVIVSELVM 64 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~-~~~s~~~~~l~~ 64 (614)
+|.+++||||++++.. .+- +-++.++. .+.++. .+..-+ .+-..++-. ..||+.++++..
T Consensus 560 vPl~~~GKvDkkaL~~-~~s~~~~~~~s~~~-~~~~~~~~~~~~~v~d~~l~~~~~~~~s~d~~fF~lGgdSi~av~~~~ 637 (1032)
T KOG1178|consen 560 VPLNPNGKVDKKALLE-YNSKLTNVQDSSLS-EAKDSILSLPLSTVFDLWLSIGSLAIVSPDSSFFQLGGDSISAVRLSG 637 (1032)
T ss_pred CCcCCCCCcChhhhhh-hhhhhcccccceee-ccccccccccccchhhhhhhhcCccccCCCcchhhhcchhHHHHHHHH
Confidence 7999999999999977 333 22333321 111111 000000 111111111 229999999999
Q ss_pred HHHhhcCCCCccccccCCCCchhhh----------------------hc----------CCc--ccc-------cccCCc
Q psy6053 65 AANKVNNMNVPYETFYKPPVLSEEY----------------------RN----------LPD--RIG-------ETFTGK 103 (614)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~tl~~~~----------------------~~----------~~~--~i~-------~~~~~~ 103 (614)
.+++...+..|..-++..+|+.... .. .++ +.+ +--.++
T Consensus 638 ~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 717 (1032)
T KOG1178|consen 638 LLRKKGYVEGPLGLIFKLLTIVNLESGIIRIKSQEKSSSKLNHKIELKNLKDRTQLSDTIPKSSPLPLNLSIEVKKSELL 717 (1032)
T ss_pred hhhhhheeccccccccchhhHHHHHHHHhhhhhhccchhhhhhhhhhccccchhhHhhhccccccCCCCCcccccccccc
Confidence 9999988888888888887765210 00 000 000 001233
Q ss_pred E--EEEecccccccHHHHHHHHhhCCC--ccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 104 T--LFMTGASGFLGKVLLEKILRKSPN--VKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 104 ~--VLITGaTGFlG~~Ll~~Ll~~g~~--v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+ +++||.+|++|+...+.+.....- .-.+.+++|..+......|.+.... .+..+. ++ ..-++..+.+++
T Consensus 718 t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~~~~~~~a~~e~a~~~~~~~~i~--~~~~~~---e~-~~i~~~~~~~~~ 791 (1032)
T KOG1178|consen 718 TAYVFLTGYTGYLGRRKLSNLVKLSNFFYIILVFALVRASSEEASGGRLQDAIQ--IYGVLN---EE-LLINIIVHLIDL 791 (1032)
T ss_pred ccceeeeeccceehhhhhhhhhhhhhhhheeeeEEEeccCCchhhccchhchhh--hhhhcc---cc-ccceeeeehhhh
Confidence 3 899999999999999888766421 2347788888776655555554332 222222 22 345778889999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+...+|+....+..+.++++.++|.++.++...++......|+.+|.+.+.++...+ +.+..+|+.
T Consensus 792 ~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~v~~~t~~~~~~~~~~~~~~~l~~~l~--~~~~~~s~~ 857 (1032)
T KOG1178|consen 792 SKSLFGLEDTLWNKLQEPVSIVIHNGALVHEVLRYTELRYPNVIGTITVLPLYSFLK--KKPKDISLS 857 (1032)
T ss_pred hhhhhcccchhhhccccCcceecccccceeeechhhccCCceeeeeeeeeeeecccc--ccceeEEee
Confidence 999999999999999999999999999999999999999999999999999988742 344444443
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.6e-05 Score=80.33 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=53.7
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..+++++|+||||||++|+.++++|++. ..+.+|+++.|+. +|+.++.. +...+
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~-~gv~~lilv~R~~------~rl~~La~-------------------el~~~ 204 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAK-TGVAELLLVARQQ------ERLQELQA-------------------ELGGG 204 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhh-CCCCEEEEEcCCH------HHHHHHHH-------------------Hhccc
Confidence 3577899999999999999999999865 2245788888853 24433211 01123
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccC
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIR 209 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~ 209 (614)
|+. ++...+.++|+|||+|+...
T Consensus 205 ~i~---------~l~~~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 205 KIL---------SLEEALPEADIVVWVASMPK 227 (340)
T ss_pred cHH---------hHHHHHccCCEEEECCcCCc
Confidence 332 35577789999999999865
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00026 Score=73.91 Aligned_cols=176 Identities=14% Similarity=0.035 Sum_probs=107.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVK-----KIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~-----~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+++|.|+||+|++|..++..|+..+. .. .++++++.+....+...-.++.+.. .| ...++.+..
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~--------~~--~~~~~~i~~ 70 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEM-FGPDQPVILQLLELPQALKALEGVAMELEDCA--------FP--LLAEIVITD 70 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEEecCCcccccceeehhhhhcc--------cc--ccCceEEec
Confidence 57899999999999999999987653 23 6888887543211111111111100 01 111222221
Q ss_pred CCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcc
Q psy6053 177 GDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKV 255 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~ 255 (614)
+ ++ +.++++|+||-+|+..+ ..++..+.+..|+.-.+.+....++......++.+-|- +
T Consensus 71 ~------------~~-~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN---P---- 130 (322)
T cd01338 71 D------------PN-VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN---P---- 130 (322)
T ss_pred C------------cH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC---c----
Confidence 1 23 34578999999999754 23456678899999999999998885322444444332 1
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcC--CCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLG--EFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~--~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+|. +. ...-+..+ +..+.|+.|+..++++....++ .|++...+|..+|+|+..
T Consensus 131 ---------vD~---~t-----------~~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG 186 (322)
T cd01338 131 ---------CNT---NA-----------LIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS 186 (322)
T ss_pred ---------HHH---HH-----------HHHHHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence 110 00 00000000 1125788899999999988887 789999999988888753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00069 Score=71.50 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=56.7
Q ss_pred cCCcEEEEecccccccHH--HHHHHHhhCCCccEEEEEEccCCCcC---------HHHHHHHHHhChhhHHhhhhccccc
Q psy6053 100 FTGKTLFMTGASGFLGKV--LLEKILRKSPNVKKIYILMRQKKGKN---------ARQRIEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~--Ll~~Ll~~g~~v~~V~~LvR~~~~~~---------~~~Rl~~~~~~~~f~~l~~~~p~~~ 168 (614)
-.+|++|||||++-+|.+ +++.| +.|.+ |.++.+.+.... ..+.+++..+ . .
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~---Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~------------~-~ 101 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGAD---TLGVFFEKPGTEKKTGTAGWYNSAAFDKFAK------------A-A 101 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCe---EEEEecCcchhhhcccccccchHHHHHHHHH------------h-c
Confidence 347999999999999999 89999 88876 666665321110 1112222211 0 2
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEccccc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATI 208 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v 208 (614)
..++..+.+|+++++ +.+.+++ ++|++||++|..
T Consensus 102 G~~a~~i~~DVss~E------~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 102 GLYAKSINGDAFSDE------IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred CCceEEEEcCCCCHH------HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 234678899999866 5544443 589999999976
|
|
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0016 Score=63.65 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=112.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCC--ccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPN--VKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~--v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
|.++|||++..+|-.|+.+|++...+ +-+|.+..|+-.. +++-.. .+++-+|+ ..-+++++..|++
T Consensus 4 KvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~k--ae~vc~---------~lk~f~p~-~~i~~~yvlvD~s 71 (341)
T KOG1478|consen 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSK--AEAVCA---------ALKAFHPK-STIEVTYVLVDVS 71 (341)
T ss_pred eEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhH--HHHHHH---------HHHHhCCC-ceeEEEEEEEehh
Confidence 67999999999999999999987433 2234444555322 222222 44555676 5567889999999
Q ss_pred CCCCCC-CHHHHHHHhccccEEEEcccccCh----------------------------------hHHHHHHHHHhHHHH
Q psy6053 181 ADELAI-KESDRQLLASEVDIMIHGAATIRF----------------------------------DEALKKAVLLNTRGT 225 (614)
Q Consensus 181 ~~~lGL-s~~~~~~l~~~vd~ViH~AA~v~~----------------------------------~~~~~~~~~~Nv~gt 225 (614)
+-.-=+ ...++..-++..|.|+-.||...+ .+.+...+++||.|.
T Consensus 72 Nm~Sv~~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGh 151 (341)
T KOG1478|consen 72 NMQSVFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGH 151 (341)
T ss_pred hHHHHHHHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccch
Confidence 754000 001223333468999999986321 123456788999997
Q ss_pred HHHHHHHHHc---CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHH
Q psy6053 226 KMMLSLAKEM---KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKC 302 (614)
Q Consensus 226 ~~ll~la~~~---~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~ 302 (614)
--+++-.... ..-..+|.+||..+.... ++-|+++.... -.+|.-||.
T Consensus 152 fyli~~l~pll~~~~~~~lvwtSS~~a~kk~-----------------------lsleD~q~~kg------~~pY~sSKr 202 (341)
T KOG1478|consen 152 FYLIRELEPLLCHSDNPQLVWTSSRMARKKN-----------------------LSLEDFQHSKG------KEPYSSSKR 202 (341)
T ss_pred hhhHhhhhhHhhcCCCCeEEEEeeccccccc-----------------------CCHHHHhhhcC------CCCcchhHH
Confidence 7665433221 122379999998653221 11122221111 257999999
Q ss_pred HHHHHHHHHhh----CCCCEEEeecceeeccc
Q psy6053 303 LSEGLVVEAMN----NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 303 ~aE~lv~~~~~----~glp~~IvRp~~I~g~~ 330 (614)
+.+-+=....+ .|+.--++.||+-+...
T Consensus 203 l~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~~ 234 (341)
T KOG1478|consen 203 LTDLLHVALNRNFKPLGINQYVVQPGIFTTNS 234 (341)
T ss_pred HHHHHHHHHhccccccchhhhcccCceeecch
Confidence 98866544444 35666778888776554
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00066 Score=70.70 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=77.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+|.||||.+|++++..|.........+.++.|.+.. ... -+ ++ . ..+....+.| .+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~-al-Dl---------~------~~~~~~~i~~--~~~ 60 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGV-AV-DL---------S------HIPTAVKIKG--FSG 60 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cce-eh-hh---------h------cCCCCceEEE--eCC
Confidence 689999999999999999886533333457777776431 110 00 00 0 0011112233 111
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+++.+.++++|+||-+||..+- ..+..+.+..|+..++++++..++. +.++++.+.|-
T Consensus 61 ------~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsN 119 (312)
T PRK05086 61 ------EDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITN 119 (312)
T ss_pred ------CCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccC
Confidence 1444556889999999998543 3445678899999999999999995 88898888875
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00027 Score=74.75 Aligned_cols=100 Identities=25% Similarity=0.314 Sum_probs=75.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+|.|| |++|+.++++|++++- .+|++..|++.+ ..|+.+. ...+++.++.|+.+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~---~~~i~~~----------------~~~~v~~~~vD~~d 58 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEK---CARIAEL----------------IGGKVEALQVDAAD 58 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHHH---HHHHHhh----------------ccccceeEEecccC
Confidence 478999998 9999999999999973 469999998643 2333221 33589999999999
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
.+ .+.+++++.|+|||++.... +.+++++|.+. ++ .|+-|++
T Consensus 59 ~~------al~~li~~~d~VIn~~p~~~---------------~~~i~ka~i~~-gv---~yvDts~ 100 (389)
T COG1748 59 VD------ALVALIKDFDLVINAAPPFV---------------DLTILKACIKT-GV---DYVDTSY 100 (389)
T ss_pred hH------HHHHHHhcCCEEEEeCCchh---------------hHHHHHHHHHh-CC---CEEEccc
Confidence 76 78899999999999987521 13678888884 43 4555554
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0005 Score=74.01 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=67.3
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|+|.|| |++|+.+++.|++++ +..+|.+..|+. ++++++.+.- ...++..+..|+.+++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~-~~~~v~va~r~~------~~~~~~~~~~------------~~~~~~~~~~d~~~~~- 59 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRG-PFEEVTVADRNP------EKAERLAEKL------------LGDRVEAVQVDVNDPE- 59 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTT-CE-EEEEEESSH------HHHHHHHT--------------TTTTEEEEE--TTTHH-
T ss_pred CEEEcC-cHHHHHHHHHHhcCC-CCCcEEEEECCH------HHHHHHHhhc------------cccceeEEEEecCCHH-
Confidence 789999 999999999999985 334789999974 3343332210 2258999999999866
Q ss_pred CCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 185 AIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 185 GLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
++.++++++|+||||++.. +. ..++++|.+. + ..|+.+.+
T Consensus 60 -----~l~~~~~~~dvVin~~gp~-~~--------------~~v~~~~i~~-g---~~yvD~~~ 99 (386)
T PF03435_consen 60 -----SLAELLRGCDVVINCAGPF-FG--------------EPVARACIEA-G---VHYVDTSY 99 (386)
T ss_dssp -----HHHHHHTTSSEEEE-SSGG-GH--------------HHHHHHHHHH-T----EEEESS-
T ss_pred -----HHHHHHhcCCEEEECCccc-hh--------------HHHHHHHHHh-C---CCeeccch
Confidence 7999999999999999875 22 3578888885 3 35666554
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00084 Score=70.20 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=73.9
Q ss_pred EEEEecccccccHHHHHHHHhhCCCcc-----EEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVK-----KIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~-----~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+|.||||+|.+|+.++..|+..+. +. .++++++.+.. ++.+....|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~-~~~~~~~~l~L~Di~~~~----------------------------~~~~g~~~D 52 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGEL-FGDDQPVILHLLDIPPAM----------------------------KALEGVVME 52 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCc-cCCCCceEEEEEecCCcc----------------------------Cccceeeee
Confidence 689999999999999998887642 22 37777776521 112222333
Q ss_pred CCCCCCCCCH-----HHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 179 AEADELAIKE-----SDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 179 l~~~~lGLs~-----~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+.+....+.. ....+.++++|+|||+||..+- .++..+.+..|+.-.+++....++..+...++.+-|
T Consensus 53 l~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 53 LQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred hhhhcccccCCcEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 3332100000 1234566899999999997542 356677889999999999998888523444444433
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2733|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0006 Score=69.73 Aligned_cols=90 Identities=17% Similarity=0.339 Sum_probs=61.6
Q ss_pred EEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
.+.|-|||||-|+++++++++.+ .+-..+-+..|+. ++|++.++. .-++..++ ....+ ++.+|.+++
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~------~KL~~vL~~----~~~k~~~~-ls~~~-i~i~D~~n~ 74 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNE------KKLQEVLEK----VGEKTGTD-LSSSV-ILIADSANE 74 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCH------HHHHHHHHH----HhhccCCC-cccce-EEEecCCCH
Confidence 48999999999999999999832 1111244455553 445544321 11111222 33445 889999997
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChh
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFD 211 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~ 211 (614)
. .+.++++.+.+|+||+|.-+|.
T Consensus 75 ~------Sl~emak~~~vivN~vGPyR~h 97 (423)
T KOG2733|consen 75 A------SLDEMAKQARVIVNCVGPYRFH 97 (423)
T ss_pred H------HHHHHHhhhEEEEeccccceec
Confidence 7 8999999999999999998764
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00039 Score=74.63 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=55.2
Q ss_pred ccCCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhh
Q psy6053 99 TFTGKTLFMTGA----------------SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162 (614)
Q Consensus 99 ~~~~~~VLITGa----------------TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~ 162 (614)
.++||+|+|||| ||.+|.++++.|.++|.+ |+++.++....
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~---V~~v~~~~~~~-------------------- 241 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGAD---VTLVSGPVNLP-------------------- 241 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCE---EEEeCCCcccc--------------------
Confidence 468999999999 999999999999999977 77777764210
Q ss_pred hccccccCeEEEEeCCCCCCCCCCCHHHHHHHh----ccccEEEEcccccChh
Q psy6053 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLA----SEVDIMIHGAATIRFD 211 (614)
Q Consensus 163 ~~p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~----~~vd~ViH~AA~v~~~ 211 (614)
....+ ...|+++.+ ++.+.+ .++|++||+||..++.
T Consensus 242 -----~~~~~--~~~dv~~~~------~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 242 -----TPAGV--KRIDVESAQ------EMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred -----CCCCc--EEEccCCHH------HHHHHHHHhcCCCCEEEEcccccccc
Confidence 11122 245777643 444433 4689999999987654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00079 Score=65.16 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=55.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++++|+||||.+|+.+++.|++.|.+ |+++.|.. ++.+++.+ .+.+ ..+.....+|.
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~---V~l~~R~~------~~~~~l~~-----~l~~------~~~~~~~~~~~ 85 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGAR---VVLVGRDL------ERAQKAAD-----SLRA------RFGEGVGAVET 85 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEcCCH------HHHHHHHH-----HHHh------hcCCcEEEeeC
Confidence 45789999999999999999999998754 88888863 33333211 1110 01233445566
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATI 208 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v 208 (614)
.+. ++....++++|+||++.+.-
T Consensus 86 ~~~------~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 86 SDD------AARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CCH------HHHHHHHhcCCEEEECCCCC
Confidence 553 36778888999999976643
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=66.60 Aligned_cols=96 Identities=13% Similarity=0.232 Sum_probs=62.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||+||||. |+.|++.|.+.|++ |++.+|...+..... ......++.|-+ +
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~---v~~s~~t~~~~~~~~---------------------~~g~~~v~~g~l-~- 53 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIE---ILVTVTTSEGKHLYP---------------------IHQALTVHTGAL-D- 53 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCe---EEEEEccCCcccccc---------------------ccCCceEEECCC-C-
Confidence 58999999999 99999999999876 888888875532110 111223333433 3
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
.+++..+++ ++|+|||++.. +.. .-++++.++|++. ++..+-|
T Consensus 54 -----~~~l~~~l~~~~i~~VIDAtHP------fA~------~is~~a~~a~~~~-~ipylR~ 98 (256)
T TIGR00715 54 -----PQELREFLKRHSIDILVDATHP------FAA------QITTNATAVCKEL-GIPYVRF 98 (256)
T ss_pred -----HHHHHHHHHhcCCCEEEEcCCH------HHH------HHHHHHHHHHHHh-CCcEEEE
Confidence 235655554 59999998653 222 2357788999996 6654433
|
This enzyme was found to be a monomer by gel filtration. |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.016 Score=56.19 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=70.2
Q ss_pred ccCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+++||++||+|-. --|+-.+.+.|.++|.++ ...-... ..+.|++++.+ ....-.+++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL---~fTy~~e---~l~krv~~la~--------------~~~s~~v~~ 62 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAEL---AFTYQGE---RLEKRVEELAE--------------ELGSDLVLP 62 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEE---EEEeccH---HHHHHHHHHHh--------------hccCCeEEe
Confidence 5789999999954 468889999999999873 3322221 34566666533 112235789
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHH
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKE 234 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~ 234 (614)
+|+++.+ +++.+++ +.|.++|+-|...- .+.+..+.++...+...+.+.|+.
T Consensus 63 cDV~~d~------~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~ 132 (259)
T COG0623 63 CDVTNDE------SIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARP 132 (259)
T ss_pred cCCCCHH------HHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHH
Confidence 9999855 6666654 57999999987541 122333445555555555555554
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0023 Score=66.96 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=74.3
Q ss_pred EEEEecccccccHHHHHHHHhhCCCcc-----EEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVK-----KIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~-----~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+|.|+||+|.+|+.++..|...+- +. .++++++.+... +.+....|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~-~~~~~e~el~LiD~~~~~~----------------------------~a~g~~~D 51 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRM-LGKDQPIILHLLDIPPAMK----------------------------VLEGVVME 51 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccc-cCCCCccEEEEEecCCccc----------------------------ccceeEee
Confidence 489999999999999999987542 11 477888754321 12233344
Q ss_pred CCCCCCCC-C----HHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 179 AEADELAI-K----ESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 179 l~~~~lGL-s----~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+.+....+ . ..+....++++|+|||+||..+- .++..+.+..|+.-.+++.+..++..+.+.++.+-|
T Consensus 52 l~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 52 LMDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred hhcccchhcCceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 44432100 0 00223456899999999998654 344678889999999999999888523445544443
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00095 Score=63.89 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=47.6
Q ss_pred CCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhc
Q psy6053 101 TGKTLFMTGA----------------SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVH 164 (614)
Q Consensus 101 ~~~~VLITGa----------------TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~ 164 (614)
+||+||||+| ||-+|..|++.++++|++ |.++..+..-.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~---V~li~g~~~~~---------------------- 56 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAE---VTLIHGPSSLP---------------------- 56 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-E---EEEEE-TTS------------------------
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCE---EEEEecCcccc----------------------
Confidence 5778888865 788999999999999987 67666663211
Q ss_pred cccccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhH
Q psy6053 165 GQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDE 212 (614)
Q Consensus 165 p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~ 212 (614)
....+..+..+-.+.- .+...+.+.+.|++||+||..+|..
T Consensus 57 ---~p~~~~~i~v~sa~em----~~~~~~~~~~~Di~I~aAAVsDf~p 97 (185)
T PF04127_consen 57 ---PPPGVKVIRVESAEEM----LEAVKELLPSADIIIMAAAVSDFRP 97 (185)
T ss_dssp -----TTEEEEE-SSHHHH----HHHHHHHGGGGSEEEE-SB--SEEE
T ss_pred ---ccccceEEEecchhhh----hhhhccccCcceeEEEecchhheee
Confidence 1235666665433311 1234445567899999999988753
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=53.58 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=77.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|.|.||+|.+|++++..|+..+. +.+++++++.+.. ++....++.+.. +. ...++.+..+|..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~--~~g~a~Dl~~~~---------~~-~~~~~~i~~~~~~-- 65 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDK--AEGEALDLSHAS---------AP-LPSPVRITSGDYE-- 65 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHH--HHHHHHHHHHHH---------HG-STEEEEEEESSGG--
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCccc--ceeeehhhhhhh---------hh-ccccccccccccc--
Confidence 5799999999999999999998854 5779999987532 112122221110 11 2123444444333
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
.++++|+|+-+|+..+ ..++..+.++.|+.-.+++.+...+. +.+.++.+-|
T Consensus 66 -----------~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvt 118 (141)
T PF00056_consen 66 -----------ALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVT 118 (141)
T ss_dssp -----------GGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-S
T ss_pred -----------ccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeC
Confidence 2468999999999753 34556778899999999999998886 4554444433
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0047 Score=63.74 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=55.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++++|||| |.+|+.++..|.+.|. ++|+++.|.... .+|.+++.+ .+.. ...++.+...|+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~--~~V~I~~R~~~~---~~~a~~l~~-----~l~~-----~~~~~~~~~~d~ 187 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGA--KEITIFNIKDDF---YERAEQTAE-----KIKQ-----EVPECIVNVYDL 187 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCchH---HHHHHHHHH-----HHhh-----cCCCceeEEech
Confidence 46789999998 7899999999999874 469999997521 122222211 1111 112344556677
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAA 206 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA 206 (614)
++.+ ++...++++|+|||+-.
T Consensus 188 ~~~~------~~~~~~~~~DilINaTp 208 (289)
T PRK12548 188 NDTE------KLKAEIASSDILVNATL 208 (289)
T ss_pred hhhh------HHHhhhccCCEEEEeCC
Confidence 6543 56667778899999754
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0054 Score=54.50 Aligned_cols=40 Identities=23% Similarity=0.544 Sum_probs=32.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccC-CCcCH
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK-KGKNA 144 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~-~~~~~ 144 (614)
+|.|.||||++|+.|++.|++. |++.-+.+..|+. .++..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~ 41 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPL 41 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBH
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCee
Confidence 6899999999999999999884 8887777777776 55443
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.031 Score=59.86 Aligned_cols=184 Identities=20% Similarity=0.161 Sum_probs=96.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
-+.++|.|.||||++|..|++.|++. |. .+|..+.+..+.. +++.+ .. .....+|.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h-P~-~el~~l~s~~saG---~~i~~------------~~-------~~l~~~~~ 91 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH-PD-FEITVMTADRKAG---QSFGS------------VF-------PHLITQDL 91 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC-CC-CeEEEEEChhhcC---CCchh------------hC-------ccccCccc
Confidence 35679999999999999999988887 65 4688887753221 11110 01 11222343
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEK 259 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~ 259 (614)
.+.. .+ +... ++++|+||-+.+.- ...+++..+.+ + +++|-.|+.+-..+.. .-|+
T Consensus 92 ~~~~-~~---~~~~-~~~~DvVf~Alp~~---------------~s~~i~~~~~~--g-~~VIDlSs~fRl~~~~-~y~~ 147 (381)
T PLN02968 92 PNLV-AV---KDAD-FSDVDAVFCCLPHG---------------TTQEIIKALPK--D-LKIVDLSADFRLRDIA-EYEE 147 (381)
T ss_pred ccee-cC---CHHH-hcCCCEEEEcCCHH---------------HHHHHHHHHhC--C-CEEEEcCchhccCCcc-cchh
Confidence 3211 01 1122 37899999876541 23455555432 3 6899999998654432 2344
Q ss_pred cCCCCCChhHHHH-HHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCC---CEEEeecceeecccCCC
Q psy6053 260 PYPPPTDPHKLIE-RVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGM---PCLMLRPSIIIPVWREP 333 (614)
Q Consensus 260 ~~~~p~~~~~~~~-~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~gl---p~~IvRp~~I~g~~~~p 333 (614)
.|..|....++.. .+--+.|-.-+.+...-+-.-|+.|+-+=.++=.=+.+.. ++ ++++-=.+.+.|.++.+
T Consensus 148 ~y~~p~~~pe~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~--~i~~~~iiv~a~sgvSGAG~~~ 223 (381)
T PLN02968 148 WYGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPLVPLVKAG--LIEPDNIIIDAKSGVSGAGRGA 223 (381)
T ss_pred ccCCCCCCcccchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcC--CCCCceEEEEEeeeccccCccc
Confidence 5544432111111 1111222111222222233458889887766655554432 23 24444455666665544
|
|
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.014 Score=67.84 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=116.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+.+|+||-|..|-.|...|..+|.+ ++++..|+.-....+.+.-. +.+. ..-+|.+-.-|++.
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar--~lVLtSRsGirtGYQa~~vr--------rWr~-----~GVqV~vsT~nitt 1832 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGAR--KLVLTSRSGIRTGYQALMVR--------RWRR-----RGVQVQVSTSNITT 1832 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCce--EEEEeccccchhhHHHHHHH--------HHHh-----cCeEEEEecccchh
Confidence 478999999999999999999999854 78888887543333333221 1111 11234444567766
Q ss_pred CCCCCCHHHHHHHhcc------ccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-cCCCceEEEEeCc
Q psy6053 182 DELAIKESDRQLLASE------VDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-MKHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~------vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~V~vST~ 247 (614)
.. .-..++++ +-.|||+|+..+. .+..++.-+.-+.||.++=+..++ |+-++-||..||.
T Consensus 1833 ~~------ga~~Li~~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSv 1906 (2376)
T KOG1202|consen 1833 AE------GARGLIEESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSV 1906 (2376)
T ss_pred hh------hHHHHHHHhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEee
Confidence 44 55566653 5789999997653 234455566678899998888776 4678899999998
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceee
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIII 327 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~ 327 (614)
++...+. . -..|+.+....|+++.+-...|+|-+.+.-|.|.
T Consensus 1907 scGRGN~--G------------------------------------QtNYG~aNS~MERiceqRr~~GfPG~AiQWGAIG 1948 (2376)
T KOG1202|consen 1907 SCGRGNA--G------------------------------------QTNYGLANSAMERICEQRRHEGFPGTAIQWGAIG 1948 (2376)
T ss_pred cccCCCC--c------------------------------------ccccchhhHHHHHHHHHhhhcCCCcceeeeeccc
Confidence 6532211 0 1569999999999999887789998877766653
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.027 Score=58.69 Aligned_cols=119 Identities=16% Similarity=0.097 Sum_probs=72.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|+||||.+|.+++..|+..|.. ..|.+++|.++.........++ .+.+. . ......+.. +
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~-~~v~lvd~~~~~~~l~~~~~dl-----~d~~~----~-~~~~~~i~~---~-- 64 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-KEINLISRPKSLEKLKGLRLDI-----YDALA----A-AGIDAEIKI---S-- 64 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CEEEEEECcccccccccccchh-----hhchh----c-cCCCcEEEE---C--
Confidence 58999999999999999999998753 5688999854211111100011 11100 0 000111111 1
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCc-eEEEEe
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHIS 245 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~V~vS 245 (614)
. +++. +.++|+||-+|+...- ..+..+.++.|+.-.+++.+...+. ..+ .++.+|
T Consensus 65 ~------d~~~-l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~~ 121 (309)
T cd05294 65 S------DLSD-VAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVVT 121 (309)
T ss_pred C------CHHH-hCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 1 3443 6899999999997543 3355677888999999998877774 233 344444
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0066 Score=65.04 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=53.9
Q ss_pred ccCCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhh
Q psy6053 99 TFTGKTLFMTGA----------------SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162 (614)
Q Consensus 99 ~~~~~~VLITGa----------------TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~ 162 (614)
.++|++|+|||| ||.+|..+++.|..+|.+ |+++.++....
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~---V~~~~g~~~~~-------------------- 238 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGAD---VTLITGPVSLL-------------------- 238 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCE---EEEeCCCCccC--------------------
Confidence 378999999998 478999999999999977 67766654221
Q ss_pred hccccccCeEEEEeCCCCCCCCCCCHHHH-HHHh----ccccEEEEcccccChh
Q psy6053 163 VHGQKIIDKVLPISGDAEADELAIKESDR-QLLA----SEVDIMIHGAATIRFD 211 (614)
Q Consensus 163 ~~p~~~~~~v~~v~gDl~~~~lGLs~~~~-~~l~----~~vd~ViH~AA~v~~~ 211 (614)
....+ ...|+++.+ ++ +.+. .++|++||+||..+|.
T Consensus 239 -----~~~~~--~~~~v~~~~------~~~~~~~~~~~~~~D~~i~~Aavsd~~ 279 (390)
T TIGR00521 239 -----TPPGV--KSIKVSTAE------EMLEAALNELAKDFDIFISAAAVADFK 279 (390)
T ss_pred -----CCCCc--EEEEeccHH------HHHHHHHHhhcccCCEEEEcccccccc
Confidence 11122 345666543 44 3333 4689999999987763
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.018 Score=60.66 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=76.8
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----HHH-----HhChhhHHhhhhccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----EEL-----FASPLFNLLKSVHGQ 166 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~~~-----~~~~~f~~l~~~~p~ 166 (614)
++..+.++|+|.|+ |.+|+.+++.|.+.| |.+|.++++..-..+...|- +++ .....-+++++-.|+
T Consensus 19 Q~~L~~~~VlVvG~-GglGs~va~~La~aG--vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~ 95 (339)
T PRK07688 19 QQKLREKHVLIIGA-GALGTANAEMLVRAG--VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSD 95 (339)
T ss_pred HHHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCC
Confidence 34466789999996 889999999999997 55788888764111111110 000 000111233333343
Q ss_pred cccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 167 KIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 167 ~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
-+++.+..+++. +....+++++|+||-+... +. .-..+-++|.+. + +++|+.|+
T Consensus 96 ---v~v~~~~~~~~~-------~~~~~~~~~~DlVid~~Dn--~~------------~r~~ln~~~~~~-~-iP~i~~~~ 149 (339)
T PRK07688 96 ---VRVEAIVQDVTA-------EELEELVTGVDLIIDATDN--FE------------TRFIVNDAAQKY-G-IPWIYGAC 149 (339)
T ss_pred ---cEEEEEeccCCH-------HHHHHHHcCCCEEEEcCCC--HH------------HHHHHHHHHHHh-C-CCEEEEee
Confidence 457777777754 3567788999999988442 21 112355778874 4 67899887
Q ss_pred ceecc
Q psy6053 247 AYCHL 251 (614)
Q Consensus 247 ~~~~~ 251 (614)
....+
T Consensus 150 ~g~~G 154 (339)
T PRK07688 150 VGSYG 154 (339)
T ss_pred eeeee
Confidence 75444
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0076 Score=63.50 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=33.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
+++|+|.||||++|..|++.|.++++.+.++..+.|..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~ 39 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARS 39 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcccc
Confidence 468999999999999999999998777677888887743
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.045 Score=60.19 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=57.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+|+|+++ +|..+++.|++.|++ |++..+.... ...++++++ ...++.++.+|.
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~---V~~~d~~~~~-~~~~~~~~l----------------~~~~~~~~~~~~ 61 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAK---VILTDEKEED-QLKEALEEL----------------GELGIELVLGEY 61 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCE---EEEEeCCchH-HHHHHHHHH----------------HhcCCEEEeCCc
Confidence 4679999999988 999999999999987 7777765321 122222222 112466778887
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHH
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVL 219 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~ 219 (614)
.+ ....++|+||++++....+.....+.+
T Consensus 62 ~~-----------~~~~~~d~vv~~~g~~~~~~~~~~a~~ 90 (450)
T PRK14106 62 PE-----------EFLEGVDLVVVSPGVPLDSPPVVQAHK 90 (450)
T ss_pred ch-----------hHhhcCCEEEECCCCCCCCHHHHHHHH
Confidence 65 234579999999886433333333433
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.047 Score=52.99 Aligned_cols=126 Identities=12% Similarity=0.204 Sum_probs=77.3
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH----------HHHHHhChhhHHhhhhcccc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR----------IEELFASPLFNLLKSVHGQK 167 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R----------l~~~~~~~~f~~l~~~~p~~ 167 (614)
+-.++.+|+|.|+.| +|..+++.|.+.| |.+++.++...-..+-..| +.+-.....-+++++-.|+
T Consensus 15 ~~L~~s~VlviG~gg-lGsevak~L~~~G--Vg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~- 90 (198)
T cd01485 15 NKLRSAKVLIIGAGA-LGAEIAKNLVLAG--IDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPN- 90 (198)
T ss_pred HHHhhCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCC-
Confidence 345678999999888 9999999999998 5688888766422111111 1001111223345555665
Q ss_pred ccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 168 IIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 168 ~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+++.+..++.+. .+....+++++|+||-+-.. + ... ..+-++|++. + .++++.++.
T Consensus 91 --v~i~~~~~~~~~~-----~~~~~~~~~~~dvVi~~~d~--~----~~~--------~~ln~~c~~~-~-ip~i~~~~~ 147 (198)
T cd01485 91 --VKLSIVEEDSLSN-----DSNIEEYLQKFTLVIATEEN--Y----ERT--------AKVNDVCRKH-H-IPFISCATY 147 (198)
T ss_pred --CEEEEEecccccc-----hhhHHHHHhCCCEEEECCCC--H----HHH--------HHHHHHHHHc-C-CCEEEEEee
Confidence 4677777776531 12456677899999966321 1 111 2355788884 4 578888876
Q ss_pred eec
Q psy6053 248 YCH 250 (614)
Q Consensus 248 ~~~ 250 (614)
...
T Consensus 148 G~~ 150 (198)
T cd01485 148 GLI 150 (198)
T ss_pred cCE
Confidence 433
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.032 Score=50.57 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=54.2
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-.++++|+|.|| |..|+.++..|...|. ++|++..|+. +|.+++.+. .+ ...+.++..+
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~--~~i~i~nRt~------~ra~~l~~~---------~~---~~~~~~~~~~ 67 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGA--KEITIVNRTP------ERAEALAEE---------FG---GVNIEAIPLE 67 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTS--SEEEEEESSH------HHHHHHHHH---------HT---GCSEEEEEGG
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCC--CEEEEEECCH------HHHHHHHHH---------cC---ccccceeeHH
Confidence 357899999996 7799999999999974 4899999973 444433221 11 1234554432
Q ss_pred CCCCCCCCCHHHHHHHhccccEEEEcccccC
Q psy6053 179 AEADELAIKESDRQLLASEVDIMIHGAATIR 209 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~ 209 (614)
++.....++|+||++.+...
T Consensus 68 -----------~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 68 -----------DLEEALQEADIVINATPSGM 87 (135)
T ss_dssp -----------GHCHHHHTESEEEE-SSTTS
T ss_pred -----------HHHHHHhhCCeEEEecCCCC
Confidence 45567789999999977654
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.043 Score=57.41 Aligned_cols=120 Identities=17% Similarity=0.055 Sum_probs=75.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVK-----KIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~-----~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+-+|.|+||+|++|+.++..|+..+. .. .++++++.+....+...-.++.+.. .| ....+.+..
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~--------~~--~~~~~~i~~ 71 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGEL-FGKDQPVVLHLLDIPPAMKALEGVAMELEDCA--------FP--LLAGVVATT 71 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCc-ccCCCccEEEEEecCCcccccchHHHHHhhcc--------cc--ccCCcEEec
Confidence 45899999999999999999988753 34 6888888542211111111111100 00 111122111
Q ss_pred CCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCC-ceEEEEeC
Q psy6053 177 GDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHL-ELFVHIST 246 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~-k~~V~vST 246 (614)
+ ++ +.++++|+||-+||..+ ..++..+.+..|+.-.+.+...+++. .. +.++.+-|
T Consensus 72 ~------------~~-~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~-~~~~~iiivvs 129 (323)
T TIGR01759 72 D------------PE-EAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKV-AKKDVKVLVVG 129 (323)
T ss_pred C------------hH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEEEeC
Confidence 1 23 34578999999999754 34566778999999999999998885 43 55554444
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0078 Score=59.77 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=23.9
Q ss_pred EEEec-ccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 105 LFMTG-ASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 105 VLITG-aTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
=+||. +||.+|.++++.|+++|++ |+++.|
T Consensus 17 R~itN~SSGgIG~AIA~~la~~Ga~---Vvlv~~ 47 (227)
T TIGR02114 17 RSITNHSTGHLGKIITETFLSAGHE---VTLVTT 47 (227)
T ss_pred eeecCCcccHHHHHHHHHHHHCCCE---EEEEcC
Confidence 35555 5899999999999999987 666555
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.032 Score=58.77 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=76.6
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----HHH-----HhChhhHHhhhhcc
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----EEL-----FASPLFNLLKSVHG 165 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~~~-----~~~~~f~~l~~~~p 165 (614)
.++..++++|+|.|+ |-+|+++++.|.+.| |.++.++++..-..+...|- ++. .....-+++++..|
T Consensus 18 ~Q~~L~~~~VlIiG~-GglGs~va~~La~aG--vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp 94 (338)
T PRK12475 18 GQRKIREKHVLIVGA-GALGAANAEALVRAG--IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS 94 (338)
T ss_pred HHHhhcCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC
Confidence 345567789999996 569999999999998 45788888764211111110 000 00011123444344
Q ss_pred ccccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 166 QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 166 ~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
+ -+++.+..|++. +..+++++++|+||-+.- ++... ..+-++|.+. + .++|+.+
T Consensus 95 ~---v~i~~~~~~~~~-------~~~~~~~~~~DlVid~~D--~~~~r------------~~in~~~~~~-~-ip~i~~~ 148 (338)
T PRK12475 95 E---VEIVPVVTDVTV-------EELEELVKEVDLIIDATD--NFDTR------------LLINDLSQKY-N-IPWIYGG 148 (338)
T ss_pred C---cEEEEEeccCCH-------HHHHHHhcCCCEEEEcCC--CHHHH------------HHHHHHHHHc-C-CCEEEEE
Confidence 4 467788888763 257778899999998753 22211 1244677773 4 5788887
Q ss_pred Cceecc
Q psy6053 246 TAYCHL 251 (614)
Q Consensus 246 T~~~~~ 251 (614)
.....+
T Consensus 149 ~~g~~G 154 (338)
T PRK12475 149 CVGSYG 154 (338)
T ss_pred ecccEE
Confidence 764433
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.076 Score=55.64 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=74.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVK-----KIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~-----~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
++++|.|+||+|.+|..++..|+..+- .. .+.++++.+....+...-.++.+.. .| ...++.+.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~-~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~--------~~--~~~~~~i~ 71 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDM-LGKDQPVILQLLEIPPALKALEGVVMELDDCA--------FP--LLAGVVIT 71 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhh-cCCCCccEEEEEecCCcccccceeehhhhhhh--------hh--hcCCcEEe
Confidence 457899999999999999999987643 23 6888887543211111111111100 01 11122222
Q ss_pred eCCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 176 SGDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
.+ ++ +.++++|+||-+|+..+ ..++..+.+..|+.-.+++.+..++..+.+.++.+-|
T Consensus 72 ~~------------~y-~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 72 DD------------PN-VAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred cC------------hH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 11 23 34578999999999644 3456678899999999999988888433344444444
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.28 Score=54.13 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=52.9
Q ss_pred cccCCcEEEEeccc-ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 98 ETFTGKTLFMTGAS-GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 98 ~~~~~~~VLITGaT-GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
..|.++..+||||+ |-||..++++||..|.. |++..-.- .++|++ +|+.|-..+.. ....+-+|.
T Consensus 392 ~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAt---VI~TTS~~----s~~r~e------fyr~LYa~~a~-~ga~LwvVp 457 (866)
T COG4982 392 GTYGDKVALVTGASKGSIAAAVVARLLAGGAT---VIATTSRL----SEERTE------FYRSLYARHAR-YGAALWVVP 457 (866)
T ss_pred CCcccceEEEecCCCcchHHHHHHHHHhCCcE---EEEEcccc----cHHHHH------HHHHHHHhhCC-CCceEEEEe
Confidence 45788999999987 99999999999999865 44432211 134443 33344444444 556788888
Q ss_pred CCCCCCCCCCCHHHHHHHh
Q psy6053 177 GDAEADELAIKESDRQLLA 195 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~ 195 (614)
.++.... |++.++
T Consensus 458 aN~~Sys------DVdAlI 470 (866)
T COG4982 458 ANMGSYS------DVDALI 470 (866)
T ss_pred ccccchh------hHHHHH
Confidence 8888765 666665
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.14 Score=54.16 Aligned_cols=178 Identities=19% Similarity=0.211 Sum_probs=87.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccC-CCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE-eCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQK-KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI-SGDA 179 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~-~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v-~gDl 179 (614)
++|.|.||||++|..+++.|.+. |.+ ++..+ .+.+ .++.. .+. + .++... ..++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~-el~~l~~s~~sagk~~----~~~------------~-----~~l~~~~~~~~ 57 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEV-EITYLVSSRESAGKPV----SEV------------H-----PHLRGLVDLNL 57 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEeccchhcCCCh----HHh------------C-----ccccccCCcee
Confidence 47999999999999999999866 664 45533 4332 23221 111 1 111111 1111
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEK 259 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~ 259 (614)
.+. +.+++.+++|+||-|...- ...+++..+.+ .+ +++|=.|+.+-..+. ...|+
T Consensus 58 ~~~-------~~~~~~~~~DvVf~alP~~---------------~s~~~~~~~~~-~G-~~VIDlS~~fR~~~~-~~y~~ 112 (346)
T TIGR01850 58 EPI-------DEEEIAEDADVVFLALPHG---------------VSAELAPELLA-AG-VKVIDLSADFRLKDP-EVYEK 112 (346)
T ss_pred ecC-------CHHHhhcCCCEEEECCCch---------------HHHHHHHHHHh-CC-CEEEeCChhhhcCCh-hhhHH
Confidence 111 2334446899999887542 12445555555 24 678888888643321 11223
Q ss_pred cCCCCCChhHHHH-HHhh---cchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCC---EEEeecceeecccCC
Q psy6053 260 PYPPPTDPHKLIE-RVEM---MSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMP---CLMLRPSIIIPVWRE 332 (614)
Q Consensus 260 ~~~~p~~~~~~~~-~~~~---~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp---~~IvRp~~I~g~~~~ 332 (614)
.|..+....++++ ..-- +..+.+ ...-+-.-|+.|+-+=.++=.=+.+.. .++ +++-=-+.+.|.++.
T Consensus 113 ~y~~~~~~~~~~~~~~y~lPE~n~~~i---~~~~iianPgC~~t~~~l~L~PL~~~~--~i~~~~i~v~~~sgvSGaG~~ 187 (346)
T TIGR01850 113 WYGFEHAGPELLQEAVYGLPELHREEI---KGARLIANPGCYPTATLLALAPLLKEG--LIDPTSIIVDAKSGVSGAGRK 187 (346)
T ss_pred hcCCCCCChhhhcCceEECCccCHHHh---CCCcEEEcCCcHHHHHHHHHHHHHHcC--CCCCCcEEEEEEEECcccCcC
Confidence 3332221111111 0000 111111 112223457888877666555554432 232 444445556666654
Q ss_pred C
Q psy6053 333 P 333 (614)
Q Consensus 333 p 333 (614)
+
T Consensus 188 ~ 188 (346)
T TIGR01850 188 A 188 (346)
T ss_pred c
Confidence 4
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.089 Score=52.86 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=75.6
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----HHH---HhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----EEL---FASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~~~---~~~~~f~~l~~~~p~~~ 168 (614)
++..++++|+|.|+ |-+|+.+++.|.+.| |.++.+++...-..+...|- +++ .-...-+++++..|+
T Consensus 27 Q~~L~~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~-- 101 (245)
T PRK05690 27 QEKLKAARVLVVGL-GGLGCAASQYLAAAG--VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH-- 101 (245)
T ss_pred HHHhcCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC--
Confidence 34566789999997 889999999999997 56888887664332222221 000 001122344444554
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+++.+...++. +....+++++|+||.|.... . .-..+-++|.+. + +++|+.++.
T Consensus 102 -v~i~~~~~~i~~-------~~~~~~~~~~DiVi~~~D~~--~------------~r~~ln~~~~~~-~-ip~v~~~~~ 156 (245)
T PRK05690 102 -IAIETINARLDD-------DELAALIAGHDLVLDCTDNV--A------------TRNQLNRACFAA-K-KPLVSGAAI 156 (245)
T ss_pred -CEEEEEeccCCH-------HHHHHHHhcCCEEEecCCCH--H------------HHHHHHHHHHHh-C-CEEEEeeec
Confidence 466666665543 35677889999999886432 1 112355777774 3 578876654
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.16 Score=51.85 Aligned_cols=124 Identities=12% Similarity=0.190 Sum_probs=76.0
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--------HHHHHhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--------IEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--------l~~~~~~~~f~~l~~~~p~~~ 168 (614)
++-.++.+|+|.|+ |-+|+.+++.|.+.| |.++.+.+...=..+...| +.+..-...-+++++-+|.
T Consensus 22 Q~kL~~s~VlIvG~-GGLGs~va~~LA~aG--VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~-- 96 (287)
T PRK08223 22 QQRLRNSRVAIAGL-GGVGGIHLLTLARLG--IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE-- 96 (287)
T ss_pred HHHHhcCCEEEECC-CHHHHHHHHHHHHhC--CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC--
Confidence 44466789999995 669999999999998 5688888766422211111 1000111122344544554
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+|+.+...++.. ...++++++|+|+.+.-..++.. -..+-++|.+. + +++|+.|..
T Consensus 97 -v~V~~~~~~l~~~-------n~~~ll~~~DlVvD~~D~~~~~~------------r~~ln~~c~~~-~-iP~V~~~~~ 153 (287)
T PRK08223 97 -LEIRAFPEGIGKE-------NADAFLDGVDVYVDGLDFFEFDA------------RRLVFAACQQR-G-IPALTAAPL 153 (287)
T ss_pred -CEEEEEecccCcc-------CHHHHHhCCCEEEECCCCCcHHH------------HHHHHHHHHHc-C-CCEEEEecc
Confidence 5677777777654 46778899999996543221111 13355678874 4 678887665
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.12 Score=61.77 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=54.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCcc------------EEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVK------------KIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~------------~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~ 168 (614)
++|+|+|.|| |++|+..++.|.+. +++. .|.+.++.. ++.+++.+ .
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~------~~a~~la~--------------~ 625 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYL------KDAKETVE--------------G 625 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCH------HHHHHHHH--------------h
Confidence 4679999996 99999999999876 4432 244444432 12222111 1
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~ 207 (614)
.+++..+..|+++.+ ++..+++++|+|+.|...
T Consensus 626 ~~~~~~v~lDv~D~e------~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 626 IENAEAVQLDVSDSE------SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred cCCCceEEeecCCHH------HHHHhhcCCCEEEECCCc
Confidence 135678899988865 777777899999999876
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=50.32 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=74.9
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----H---HHHhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----E---ELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~---~~~~~~~f~~l~~~~p~~~ 168 (614)
++..++++|+|.| .|-+|+.+++.|.+.| +.++.++++..-..+-..|- + +......-+++++-.|.
T Consensus 16 q~kl~~~~VlviG-~GglGs~ia~~La~~G--v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-- 90 (202)
T TIGR02356 16 QQRLLNSHVLIIG-AGGLGSPAALYLAGAG--VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD-- 90 (202)
T ss_pred HHHhcCCCEEEEC-CCHHHHHHHHHHHHcC--CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC--
Confidence 4456778999999 6779999999999997 55788888764222111111 0 00001122234443443
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+++.+..++.. +...++++++|+||-+.... . . -..+-++|++. + +++++.++..
T Consensus 91 -v~i~~~~~~i~~-------~~~~~~~~~~D~Vi~~~d~~--~----~--------r~~l~~~~~~~-~-ip~i~~~~~g 146 (202)
T TIGR02356 91 -IQVTALKERVTA-------ENLELLINNVDLVLDCTDNF--A----T--------RYLINDACVAL-G-TPLISAAVVG 146 (202)
T ss_pred -CEEEEehhcCCH-------HHHHHHHhCCCEEEECCCCH--H----H--------HHHHHHHHHHc-C-CCEEEEEecc
Confidence 355566555543 35677889999999886432 1 1 12355777774 4 5788888663
Q ss_pred e
Q psy6053 249 C 249 (614)
Q Consensus 249 ~ 249 (614)
.
T Consensus 147 ~ 147 (202)
T TIGR02356 147 F 147 (202)
T ss_pred C
Confidence 3
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.31 Score=51.31 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=29.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
++|.|+||||++|..|++.|.++++.+.++..+...
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~ 40 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS 40 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc
Confidence 689999999999999999999876666677666443
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.21 Score=51.90 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=72.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|.|+||||.+|++++..|+.++. +.++.++++. ..+....-|.+. . ...++....+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~-~a~g~alDL~~~--------------~-~~~~i~~~~~~---- 59 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIV-NTPGVAADLSHI--------------N-TPAKVTGYLGP---- 59 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecC-ccceeehHhHhC--------------C-CcceEEEecCC----
Confidence 5799999999999999998887753 3568888776 211111101110 0 00122211121
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+++.+.++++|+||-+||..+ ..++..+.++.|+.-.+.+.+..++. +.+.++.+
T Consensus 60 ------~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~viv 115 (310)
T cd01337 60 ------EELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILI 115 (310)
T ss_pred ------CchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 134455689999999999854 34566788999999999999888885 55554433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.082 Score=51.26 Aligned_cols=121 Identities=12% Similarity=0.179 Sum_probs=73.5
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--------HHHHHhChhhHHhhhhcccccc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--------IEELFASPLFNLLKSVHGQKII 169 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--------l~~~~~~~~f~~l~~~~p~~~~ 169 (614)
+-.++++|+|.|+.| +|..+++.|.+.| |.++..++...-..+-..| +.+-.....-+++++-.|+
T Consensus 17 ~~L~~s~VlIiG~gg-lG~evak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~--- 90 (197)
T cd01492 17 KRLRSARILLIGLKG-LGAEIAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR--- 90 (197)
T ss_pred HHHHhCcEEEEcCCH-HHHHHHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC---
Confidence 445678999999777 9999999999998 5688888765321110000 1011111223345555665
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+++++...+++ .....++++|+||-+... + +.. ..+-++|++. + .++++.++..
T Consensus 91 v~i~~~~~~~~~--------~~~~~~~~~dvVi~~~~~--~----~~~--------~~ln~~c~~~-~-ip~i~~~~~G 145 (197)
T cd01492 91 VKVSVDTDDISE--------KPEEFFSQFDVVVATELS--R----AEL--------VKINELCRKL-G-VKFYATGVHG 145 (197)
T ss_pred CEEEEEecCccc--------cHHHHHhCCCEEEECCCC--H----HHH--------HHHHHHHHHc-C-CCEEEEEecC
Confidence 467777666652 234567899999976432 1 122 2344778884 5 4788888764
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.098 Score=51.35 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=75.0
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-------HHHHhChhhHHhhhhccccc
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-------EELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-------~~~~~~~~f~~l~~~~p~~~ 168 (614)
.++..+..+|+|.|+ |-+|+.+++.|.+.| +.++.+.+...-..+...|- .+-.-...-+++++-.|+
T Consensus 22 ~q~~L~~~~V~ViG~-GglGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~-- 96 (212)
T PRK08644 22 LLEKLKKAKVGIAGA-GGLGSNIAVALARSG--VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPF-- 96 (212)
T ss_pred HHHHHhCCCEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCC--
Confidence 344566789999995 779999999999997 55788888763211111110 000000111233333343
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+++.+...++. +...++++++|+||.|.-. +. ....+.+.|.+. .-+++|+.|...
T Consensus 97 -v~v~~~~~~i~~-------~~~~~~~~~~DvVI~a~D~--~~------------~r~~l~~~~~~~-~~~p~I~~~~~~ 153 (212)
T PRK08644 97 -VEIEAHNEKIDE-------DNIEELFKDCDIVVEAFDN--AE------------TKAMLVETVLEH-PGKKLVAASGMA 153 (212)
T ss_pred -CEEEEEeeecCH-------HHHHHHHcCCCEEEECCCC--HH------------HHHHHHHHHHHh-CCCCEEEeehhh
Confidence 456666666654 3566778899999988321 11 123456677773 136788887654
Q ss_pred ecc
Q psy6053 249 CHL 251 (614)
Q Consensus 249 ~~~ 251 (614)
.++
T Consensus 154 ~~~ 156 (212)
T PRK08644 154 GYG 156 (212)
T ss_pred ccC
Confidence 444
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.075 Score=52.79 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=73.7
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--------HHHHHhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--------IEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--------l~~~~~~~~f~~l~~~~p~~~ 168 (614)
++..++++|+|.| .|-+|+++++.|.+.| |.++.+.+...-..+...| +.+......-+++++-.|+
T Consensus 16 q~~L~~~~VlivG-~GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-- 90 (228)
T cd00757 16 QEKLKNARVLVVG-AGGLGSPAAEYLAAAG--VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD-- 90 (228)
T ss_pred HHHHhCCcEEEEC-CCHHHHHHHHHHHHcC--CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC--
Confidence 3445678999999 5669999999999998 5578777554311111111 0000001122334444443
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+++.+..+++ .++..++++++|+||-|..... . -..+-++|.+. + +++|+.++..
T Consensus 91 -~~i~~~~~~i~-------~~~~~~~~~~~DvVi~~~d~~~--~------------r~~l~~~~~~~-~-ip~i~~g~~g 146 (228)
T cd00757 91 -VEIEAYNERLD-------AENAEELIAGYDLVLDCTDNFA--T------------RYLINDACVKL-G-KPLVSGAVLG 146 (228)
T ss_pred -CEEEEecceeC-------HHHHHHHHhCCCEEEEcCCCHH--H------------HHHHHHHHHHc-C-CCEEEEEecc
Confidence 45666666653 2357778889999999865421 1 12355778774 4 5888887654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.27 Score=51.35 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=75.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++++|.|+|| |.+|..++..|+..+- +.+++++++......+ ...++.+. .| ...++.+..+
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~-~~el~L~D~~~~~~~g--~~~Dl~~~---------~~--~~~~~~i~~~--- 66 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGI-ADELVIIDINKEKAEG--DAMDLSHA---------VP--FTSPTKIYAG--- 66 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCCchhHH--HHHHHHhh---------cc--ccCCeEEEeC---
Confidence 4679999998 9999999999988753 3578888886543221 11122111 11 1123333332
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+++. ++++|+||-+|+..+- ..+..+....|..-.+++++..++. +.+.++.+=|
T Consensus 67 ---------~~~~-~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvs 122 (315)
T PRK00066 67 ---------DYSD-CKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVAS 122 (315)
T ss_pred ---------CHHH-hCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcc
Confidence 2433 5799999999997542 3455678899999999998888874 4454444433
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.42 Score=50.61 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=27.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
.++|.|.||||++|+.+++.|.+. +++ ++.++.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~-elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PEV-EIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEEC
Confidence 368999999999999999999876 554 4666555
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.073 Score=54.49 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=50.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
..++|-|||||.|+.++|+|.+.|.+ -.+-.|+. ....++...+.. ... .-++..
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~---~aLAgRs~---~kl~~l~~~LG~----------------~~~--~~p~~~- 61 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLT---AALAGRSS---AKLDALRASLGP----------------EAA--VFPLGV- 61 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCc---hhhccCCH---HHHHHHHHhcCc----------------ccc--ccCCCC-
Confidence 46899999999999999999999866 23334442 112233322111 111 112222
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR 209 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~ 209 (614)
++..+++++.+++|+||+|.-.
T Consensus 62 -----p~~~~~~~~~~~VVlncvGPyt 83 (382)
T COG3268 62 -----PAALEAMASRTQVVLNCVGPYT 83 (382)
T ss_pred -----HHHHHHHHhcceEEEecccccc
Confidence 4478899999999999999743
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.23 Score=48.23 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=58.8
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc---CCCcCHH----HHHHHHHhChhhHHhhhhccccc
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ---KKGKNAR----QRIEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~---~~~~~~~----~Rl~~~~~~~~f~~l~~~~p~~~ 168 (614)
.++..+.++|+|.|+ |-+|+.++..|.+.| +.+|++.++. .++...+ +.+.+......-+.+.+-.|.
T Consensus 15 ~q~~L~~~~V~IvG~-GglGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~-- 89 (200)
T TIGR02354 15 IVQKLEQATVAICGL-GGLGSNVAINLARAG--IGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY-- 89 (200)
T ss_pred HHHHHhCCcEEEECc-CHHHHHHHHHHHHcC--CCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC--
Confidence 344466789999996 669999999999998 4578888877 2221110 001000001111233333343
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHG 204 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~ 204 (614)
-+++.+..+++. +.+.++++++|+||-+
T Consensus 90 -~~i~~~~~~i~~-------~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 90 -TEIEAYDEKITE-------ENIDKFFKDADIVCEA 117 (200)
T ss_pred -CEEEEeeeeCCH-------hHHHHHhcCCCEEEEC
Confidence 456666666654 3577788999999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.091 Score=46.86 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=29.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
++|.|.|++|-+|+.+++.+++. ++..-+-+++|..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCC
Confidence 58999999999999999999995 4544455666765
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.36 Score=43.47 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++++|++.| +| -|..+++.|.+.|++ |.+++.++. +++.. ....+.++.+|+.
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G~~---ViaIDi~~~------aV~~a----------------~~~~~~~v~dDlf 68 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESGFD---VIVIDINEK------AVEKA----------------KKLGLNAFVDDLF 68 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCCCE---EEEEECCHH------HHHHH----------------HHhCCeEEECcCC
Confidence 357899999 67 788899999999877 888888753 22222 1135789999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLE 239 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k 239 (614)
+|++ .+-+++|.|+-+=-.. ++ ...++++|++. +..
T Consensus 69 ~p~~--------~~y~~a~liysirpp~-------el-------~~~~~~la~~~-~~~ 104 (134)
T PRK04148 69 NPNL--------EIYKNAKLIYSIRPPR-------DL-------QPFILELAKKI-NVP 104 (134)
T ss_pred CCCH--------HHHhcCCEEEEeCCCH-------HH-------HHHHHHHHHHc-CCC
Confidence 9984 4557899999653221 11 24588999986 544
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.23 Score=44.89 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=70.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--------HHHHHhChhhHHhhhhccccccCeEE
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--------IEELFASPLFNLLKSVHGQKIIDKVL 173 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--------l~~~~~~~~f~~l~~~~p~~~~~~v~ 173 (614)
.++|+|.| .|-+|+.+++.|.+.| +.++...+...=..+-..| +.+......-+.+++..|. -+++
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~G--v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~---~~v~ 75 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSG--VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPD---VEVE 75 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHT--TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTT---SEEE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhC--CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCc---eeee
Confidence 57899999 5669999999999998 4578877754311100000 0000001112234444454 5678
Q ss_pred EEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 174 PISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 174 ~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
.+..+++ ++....+++++|+||.|..... ....+-+.|++. + +++++.++.
T Consensus 76 ~~~~~~~-------~~~~~~~~~~~d~vi~~~d~~~--------------~~~~l~~~~~~~-~-~p~i~~~~~ 126 (135)
T PF00899_consen 76 AIPEKID-------EENIEELLKDYDIVIDCVDSLA--------------ARLLLNEICREY-G-IPFIDAGVN 126 (135)
T ss_dssp EEESHCS-------HHHHHHHHHTSSEEEEESSSHH--------------HHHHHHHHHHHT-T--EEEEEEEE
T ss_pred eeecccc-------cccccccccCCCEEEEecCCHH--------------HHHHHHHHHHHc-C-CCEEEEEee
Confidence 8887773 3467888899999999865421 113466778884 4 478887766
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.14 Score=51.20 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=74.3
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----HHH---HhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----EEL---FASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~~~---~~~~~f~~l~~~~p~~~ 168 (614)
++-.++.+|+|.| .|-+|+.+++.|.+.| |.++++.+...-..+...|- .++ .....-+++++..|+
T Consensus 19 q~~L~~~~VlvvG-~GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~-- 93 (240)
T TIGR02355 19 QEALKASRVLIVG-LGGLGCAASQYLAAAG--VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH-- 93 (240)
T ss_pred HHHHhCCcEEEEC-cCHHHHHHHHHHHHcC--CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC--
Confidence 3446678999999 5679999999999997 66888887765332211221 000 001112344444454
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+++.+...++ ++...+++++.|+||.+.-... . ...+-++|.+. + +++|+.++..
T Consensus 94 -v~i~~~~~~i~-------~~~~~~~~~~~DlVvd~~D~~~------~--------r~~ln~~~~~~-~-ip~v~~~~~g 149 (240)
T TIGR02355 94 -IAINPINAKLD-------DAELAALIAEHDIVVDCTDNVE------V--------RNQLNRQCFAA-K-VPLVSGAAIR 149 (240)
T ss_pred -cEEEEEeccCC-------HHHHHHHhhcCCEEEEcCCCHH------H--------HHHHHHHHHHc-C-CCEEEEEecc
Confidence 45666555443 3457778899999998864321 1 12345777773 3 5788876653
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.2 Score=53.19 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=74.9
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--------HHHHHhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--------IEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--------l~~~~~~~~f~~l~~~~p~~~ 168 (614)
++..++.+|+|.|+ |-+|+.+++.|.+.| |.++.+++...-..+-..| +........-+++++..|+
T Consensus 23 q~~L~~~~VlivG~-GGlGs~~a~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-- 97 (355)
T PRK05597 23 QQSLFDAKVAVIGA-GGLGSPALLYLAGAG--VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD-- 97 (355)
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC--
Confidence 34466789999996 779999999999997 5688888776422111111 0000001122345555555
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+++.+...++. +....+++++|+||.|.... ... ..+-++|.+. + ++||+.++.
T Consensus 98 -v~v~~~~~~i~~-------~~~~~~~~~~DvVvd~~d~~--~~r------------~~~n~~c~~~-~-ip~v~~~~~ 152 (355)
T PRK05597 98 -VKVTVSVRRLTW-------SNALDELRDADVILDGSDNF--DTR------------HLASWAAARL-G-IPHVWASIL 152 (355)
T ss_pred -cEEEEEEeecCH-------HHHHHHHhCCCEEEECCCCH--HHH------------HHHHHHHHHc-C-CCEEEEEEe
Confidence 467777666654 24567788999999986531 111 1244677773 3 678888765
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.41 Score=51.23 Aligned_cols=119 Identities=14% Similarity=0.017 Sum_probs=72.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCcc-----EEEEE--EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVK-----KIYIL--MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~-----~V~~L--vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
.-+|.|+||+|.+|.+++..|+..+- .. .++++ .+.++. ++....++.+.. .| ...++.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l-~~~~~ei~L~L~diD~~~~~--a~g~a~DL~d~a--------~~--~~~~v~i 110 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEV-FGQDQPIALKLLGSERSKEA--LEGVAMELEDSL--------YP--LLREVSI 110 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEeccCccchh--hhHHHHHHHHhh--------hh--hcCceEE
Confidence 45899999999999999999988753 12 12223 333322 122122222211 01 1123333
Q ss_pred EeCCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 175 ISGDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
..+| + ..++++|+||-+||..+ ..++..+.+..|+.-.+++....++..+...++.+-|
T Consensus 111 ~~~~------------y-~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 111 GIDP------------Y-EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ecCC------------H-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 3322 2 33578999999999754 2345667889999999999999888533455444444
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.11 Score=55.25 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=28.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++|.|+||||++|+.|++.|++. +++ ++.++.++.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p~~-el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-PWF-EVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEEcCh
Confidence 368999999999999999998875 553 677775554
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.34 Score=52.71 Aligned_cols=122 Identities=9% Similarity=0.016 Sum_probs=73.4
Q ss_pred CcEEEEecccccccHHHHHHHHhh---CCCc-cEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRK---SPNV-KKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~---g~~v-~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.-+|.||||+|.+|-+|+-.|.+- |++- -.+++++.+.....++.-.-++.+... | ....+.+..+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------p--ll~~v~i~~~ 192 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------P--LLRGISVTTD 192 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------h--hcCCcEEEEC
Confidence 457999999999999999988762 3331 124455554222222222223322110 1 1123444322
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCC-CceEEEEeC
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKH-LELFVHIST 246 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~-~k~~V~vST 246 (614)
| ...++++|+||-+||..+- ..+..+.++.|+.-.+.+.+...+... -.+++.+.|
T Consensus 193 ~-------------~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 193 L-------------DVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred C-------------HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 2 2456899999999997543 345677899999999999988888533 134444444
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.23 Score=53.28 Aligned_cols=122 Identities=14% Similarity=0.166 Sum_probs=72.3
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----H---HHHhChhhHHhhhhcccccc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----E---ELFASPLFNLLKSVHGQKII 169 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~---~~~~~~~f~~l~~~~p~~~~ 169 (614)
+..++++|+|.|+ |-+|+.+++.|.+.| |.++.++++..-..+-..|- + .......-+++++..|.
T Consensus 131 ~~l~~~~VlvvG~-GG~Gs~ia~~La~~G--vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~--- 204 (376)
T PRK08762 131 RRLLEARVLLIGA-GGLGSPAALYLAAAG--VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD--- 204 (376)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC---
Confidence 4457789999985 779999999999998 56898888863111111110 0 00000111233333343
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+++.+...++. +....+++++|+||.+..... . -..+-++|.+. + +++|+.++..
T Consensus 205 v~v~~~~~~~~~-------~~~~~~~~~~D~Vv~~~d~~~------~--------r~~ln~~~~~~-~-ip~i~~~~~g 260 (376)
T PRK08762 205 VQVEAVQERVTS-------DNVEALLQDVDVVVDGADNFP------T--------RYLLNDACVKL-G-KPLVYGAVFR 260 (376)
T ss_pred CEEEEEeccCCh-------HHHHHHHhCCCEEEECCCCHH------H--------HHHHHHHHHHc-C-CCEEEEEecc
Confidence 345555555443 356777889999999865421 1 11255778874 3 6888887663
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.38 Score=48.86 Aligned_cols=125 Identities=13% Similarity=0.176 Sum_probs=72.2
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH-H---HH----HHhChhhHHhhhhcccccc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR-I---EE----LFASPLFNLLKSVHGQKII 169 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R-l---~~----~~~~~~f~~l~~~~p~~~~ 169 (614)
+.+++.+|+|.| .|-+|+++++.|.+.| |.++.+++...-..+-..| + .+ ..-...-+++++-+|+
T Consensus 26 ~kL~~s~VlVvG-~GGVGs~vae~Lar~G--Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~--- 99 (268)
T PRK15116 26 QLFADAHICVVG-IGGVGSWAAEALARTG--IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPE--- 99 (268)
T ss_pred HHhcCCCEEEEC-cCHHHHHHHHHHHHcC--CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCC---
Confidence 345678999998 5779999999999998 5578877765322111111 0 00 0001222344444454
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhc-cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLAS-EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~-~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+|+.+..-++ ++....++. +.|+||.+...+. .-..+.+.|++. + .+++.+..+.
T Consensus 100 ~~V~~i~~~i~-------~e~~~~ll~~~~D~VIdaiD~~~--------------~k~~L~~~c~~~-~-ip~I~~gGag 156 (268)
T PRK15116 100 CRVTVVDDFIT-------PDNVAEYMSAGFSYVIDAIDSVR--------------PKAALIAYCRRN-K-IPLVTTGGAG 156 (268)
T ss_pred cEEEEEecccC-------hhhHHHHhcCCCCEEEEcCCCHH--------------HHHHHHHHHHHc-C-CCEEEECCcc
Confidence 45665543333 234555654 7999998865421 123577888884 4 4677665555
Q ss_pred ecc
Q psy6053 249 CHL 251 (614)
Q Consensus 249 ~~~ 251 (614)
...
T Consensus 157 ~k~ 159 (268)
T PRK15116 157 GQI 159 (268)
T ss_pred cCC
Confidence 433
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.17 Score=51.30 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=25.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
++|.|+|++|.+|+.+++.+.+. +++.-+.+..+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~ 36 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRP 36 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence 68999999999999999887765 554334444444
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.37 Score=52.44 Aligned_cols=122 Identities=15% Similarity=-0.006 Sum_probs=76.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhh-------CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCe
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRK-------SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDK 171 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~-------g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~ 171 (614)
+.+.-+|.|+||+|.+|.+++..|+.. +- +.+++.+.+.+..... ...++.+.. .| ...+
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-~~eLvliD~~~~~a~G--~amDL~daa--------~~--~~~~ 163 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPI-ALKLLGSERSKQALEG--VAMELEDSL--------YP--LLRE 163 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCc-ccEEEEEcCCcchhHH--HHHHHHHhh--------hh--hcCc
Confidence 344568999999999999999999876 32 2357777776544322 112221111 01 1123
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 172 VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+.+..+| + +.++++|+||-+||..+ ..++..+.++.|+.-.+.+.+...+..+...++.+-|
T Consensus 164 v~i~~~~------------y-e~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 164 VSIGIDP------------Y-EVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred eEEecCC------------H-HHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 3333332 2 23578999999999854 3345667889999999999998888313344444433
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.55 Score=48.57 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=75.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|-|+|| |.+|+.++..|+.++.. ..++++++.+...... .+ ++.+. .+- ....+.+ .+| .
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~-~el~LiDi~~~~~~G~-a~-DL~~~---------~~~-~~~~~~i-~~~-~-- 62 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLG-SELVLIDINEEKAEGV-AL-DLSHA---------AAP-LGSDVKI-TGD-G-- 62 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhccccc-ceEEEEEcccccccch-hc-chhhc---------chh-ccCceEE-ecC-C--
Confidence 47999999 99999999999777543 3788888884332211 11 11110 010 1122222 222 1
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
++ ..++++|+|+=+||..+- .....++++.|..-.+.+.+...+. ..+.++.|=|-
T Consensus 63 -------~y-~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtN 119 (313)
T COG0039 63 -------DY-EDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTN 119 (313)
T ss_pred -------Ch-hhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecC
Confidence 12 235789999999987653 3466788999999999998888885 55666666654
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.073 Score=56.19 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=30.4
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+|+|.||||++|..|++.|.++++.+.++..+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~ 36 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDR 36 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccc
Confidence 489999999999999999988877776777776664
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.12 Score=54.58 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=30.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
+++|.|.||||++|..|++.|.++++.+.++..+...
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~ 43 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA 43 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc
Confidence 4789999999999999999998877666667766544
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.41 Score=47.61 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=73.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHH----H----HHhChhhHHhhhhccccccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIE----E----LFASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~----~----~~~~~~f~~l~~~~p~~~~~ 170 (614)
-+++.+|+|.| .|-+|+++++.|.+.| |.++++++...-..+...|.- + ..-...-+++++-+|+ -
T Consensus 8 ~L~~~~VlVvG-~GGvGs~va~~Lar~G--Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~---~ 81 (231)
T cd00755 8 KLRNAHVAVVG-LGGVGSWAAEALARSG--VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE---C 81 (231)
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcC--CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC---c
Confidence 35568899999 5669999999999998 567888776542221111110 0 0001123344444554 5
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHh-ccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLA-SEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~-~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
+++.+...++.. ....++ .+.|+||.|.... .....+.+.|.+. + .++|...+++.
T Consensus 82 ~V~~~~~~i~~~-------~~~~l~~~~~D~VvdaiD~~--------------~~k~~L~~~c~~~-~-ip~I~s~g~g~ 138 (231)
T cd00755 82 EVDAVEEFLTPD-------NSEDLLGGDPDFVVDAIDSI--------------RAKVALIAYCRKR-K-IPVISSMGAGG 138 (231)
T ss_pred EEEEeeeecCHh-------HHHHHhcCCCCEEEEcCCCH--------------HHHHHHHHHHHHh-C-CCEEEEeCCcC
Confidence 677777666532 345555 4699999885432 1224567888884 4 46666655554
Q ss_pred c
Q psy6053 250 H 250 (614)
Q Consensus 250 ~ 250 (614)
.
T Consensus 139 ~ 139 (231)
T cd00755 139 K 139 (231)
T ss_pred C
Confidence 3
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.33 Score=53.32 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=53.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+|.|+ |.+|..+++.|.+.|++ |+++.|++. +++++. ...++.++.||.+++
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~---v~vid~~~~------~~~~~~---------------~~~~~~~~~gd~~~~ 55 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENND---VTVIDTDEE------RLRRLQ---------------DRLDVRTVVGNGSSP 55 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCc---EEEEECCHH------HHHHHH---------------hhcCEEEEEeCCCCH
Confidence 57999997 99999999999999877 777777532 222221 113578899999876
Q ss_pred CCCCCHHHHHHH-hccccEEEEccc
Q psy6053 183 ELAIKESDRQLL-ASEVDIMIHGAA 206 (614)
Q Consensus 183 ~lGLs~~~~~~l-~~~vd~ViH~AA 206 (614)
. .++.+ ++++|.|+-+..
T Consensus 56 ~------~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 56 D------VLREAGAEDADLLIAVTD 74 (453)
T ss_pred H------HHHHcCCCcCCEEEEecC
Confidence 5 67777 778999986543
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.16 Score=58.52 Aligned_cols=124 Identities=6% Similarity=0.042 Sum_probs=77.1
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHH---HHHh----ChhhHHhhhhccccc
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIE---ELFA----SPLFNLLKSVHGQKI 168 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~---~~~~----~~~f~~l~~~~p~~~ 168 (614)
.++..++.+|+|.|+ | +|+++++.|.+.|- +.++++.+...=..+...|.. .-+. ...-+++++-+|.
T Consensus 101 ~Q~~L~~~~V~IvG~-G-lGs~~a~~LaraGv-vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~-- 175 (722)
T PRK07877 101 EQERLGRLRIGVVGL-S-VGHAIAHTLAAEGL-CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPY-- 175 (722)
T ss_pred HHHHHhcCCEEEEEe-c-HHHHHHHHHHHccC-CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCC--
Confidence 345567889999999 8 99999999999972 157887776653333344420 0000 0011233333444
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+|+.+...++. +.++++++++|+|+.|.=. +... ..+-+.|.+. -+++|+-|+..
T Consensus 176 -i~v~~~~~~i~~-------~n~~~~l~~~DlVvD~~D~--~~~R------------~~ln~~a~~~--~iP~i~~~~~~ 231 (722)
T PRK07877 176 -LPVEVFTDGLTE-------DNVDAFLDGLDVVVEECDS--LDVK------------VLLREAARAR--RIPVLMATSDR 231 (722)
T ss_pred -CEEEEEeccCCH-------HHHHHHhcCCCEEEECCCC--HHHH------------HHHHHHHHHc--CCCEEEEcCCC
Confidence 467777776664 4688889999999998542 2111 2344667773 35788877654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.43 Score=49.66 Aligned_cols=115 Identities=13% Similarity=0.196 Sum_probs=72.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-HHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
++|.|.|+ |.+|+.++..|+..|.. .+|++++|....... ...+.+.. +. ....+....+
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~-~ei~l~D~~~~~~~~~a~dL~~~~------------~~-~~~~~~i~~~---- 61 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIA-DELVLIDINEEKAEGEALDLEDAL------------AF-LPSPVKIKAG---- 61 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCC-CEEEEEeCCcchhhHhHhhHHHHh------------hc-cCCCeEEEcC----
Confidence 47899995 99999999999988742 368899886543211 11111110 00 1122222222
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+++. +.++|+||.+++..+- .++..+.+..|+.-.+.+.+..++. +.+.++.+=|
T Consensus 62 --------~~~~-l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvs 117 (306)
T cd05291 62 --------DYSD-CKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVAS 117 (306)
T ss_pred --------CHHH-hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 2333 4799999999997542 3345678899999999999998885 4455544443
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.42 Score=47.53 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=74.6
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----HHH----HhChhhHHhhhhcccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----EEL----FASPLFNLLKSVHGQK 167 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~~~----~~~~~f~~l~~~~p~~ 167 (614)
++-.++.+|+|.|+ |-+|+.+++.|.+.| |.++++.+...-..+...|- +++ .....-+++++-.|+
T Consensus 22 q~~L~~~~VlIiG~-GGlGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~- 97 (231)
T PRK08328 22 QEKLKKAKVAVVGV-GGLGSPVAYYLAAAG--VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSD- 97 (231)
T ss_pred HHHHhCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCC-
Confidence 34456789999995 669999999999997 56888887654322211110 000 000001233333444
Q ss_pred ccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 168 IIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 168 ~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+++.+.+.++. +....++++.|+||.|.-.. ... ..+-++|++. + +++|+.++.
T Consensus 98 --v~v~~~~~~~~~-------~~~~~~l~~~D~Vid~~d~~--~~r------------~~l~~~~~~~-~-ip~i~g~~~ 152 (231)
T PRK08328 98 --IKIETFVGRLSE-------ENIDEVLKGVDVIVDCLDNF--ETR------------YLLDDYAHKK-G-IPLVHGAVE 152 (231)
T ss_pred --CEEEEEeccCCH-------HHHHHHHhcCCEEEECCCCH--HHH------------HHHHHHHHHc-C-CCEEEEeec
Confidence 456666665543 35677889999999886542 111 1234577773 4 678888877
Q ss_pred eecc
Q psy6053 248 YCHL 251 (614)
Q Consensus 248 ~~~~ 251 (614)
...+
T Consensus 153 g~~G 156 (231)
T PRK08328 153 GTYG 156 (231)
T ss_pred cCEE
Confidence 5444
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.62 Score=42.43 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=68.5
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH----HHHHh----ChhhHHhhhhccccccCeEEEE
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI----EELFA----SPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl----~~~~~----~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+|+|.|+ |-+|+.+++.|.+.|. .++.+.+...-..+-..|- .+-.. ...-+++++..|. -+++.+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv--~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~---v~i~~~ 74 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV--GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPG---VNVTAV 74 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC--CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCC---cEEEEE
Confidence 4889996 8899999999999985 4787776553211111110 00000 1112233333343 456666
Q ss_pred eCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 176 SGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
..++... .....+++.|+||-|.... .....+-++|++. + .+++..++..
T Consensus 75 ~~~~~~~-------~~~~~~~~~diVi~~~d~~--------------~~~~~l~~~~~~~-~-i~~i~~~~~g 124 (143)
T cd01483 75 PEGISED-------NLDDFLDGVDLVIDAIDNI--------------AVRRALNRACKEL-G-IPVIDAGGLG 124 (143)
T ss_pred eeecChh-------hHHHHhcCCCEEEECCCCH--------------HHHHHHHHHHHHc-C-CCEEEEcCCC
Confidence 6665543 2356678999999887641 1124466788884 3 5788887764
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.16 Score=55.70 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=29.8
Q ss_pred ccCCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEE
Q psy6053 99 TFTGKTLFMTGA----------------SGFLGKVLLEKILRKSPNVKKIYILM 136 (614)
Q Consensus 99 ~~~~~~VLITGa----------------TGFlG~~Ll~~Ll~~g~~v~~V~~Lv 136 (614)
.++||+||||+| ||-+|..|++.+..+|.+ |+++.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~---VtlI~ 303 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAE---VTLIS 303 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCc---EEEEe
Confidence 378999999986 688999999999999988 55554
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.69 Score=50.77 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=30.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+++|+|+|||++| +|...++.|++.|.+ |.+..+..
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~---V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGAN---VTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCE---EEEEcCCC
Confidence 4578999999998 999999999999876 77776654
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.66 Score=48.33 Aligned_cols=112 Identities=14% Similarity=0.094 Sum_probs=71.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE--eCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI--SGDAEA 181 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v--~gDl~~ 181 (614)
+|.|+||+|.+|.+++..|+..+. +..+.++++.+....+.+ |.+ ......+. .+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~a~g~a~D-L~~-----------------~~~~~~i~~~~~~--- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAGAAGVAAD-LSH-----------------IPTAASVKGFSGE--- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCCCcEEEch-hhc-----------------CCcCceEEEecCC---
Confidence 488999999999999999887753 456888887651111110 110 11111121 111
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
+++.+.++++|+||-+||..+ ...+..+.+..|+.-.+++.+..++. +.+.++.+=
T Consensus 59 -------~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivv 115 (312)
T TIGR01772 59 -------EGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVI 115 (312)
T ss_pred -------CchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEe
Confidence 023456789999999999754 34456678899999999999888875 455544433
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.48 Score=49.25 Aligned_cols=118 Identities=12% Similarity=0.141 Sum_probs=71.1
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--------HHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--------IEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--------l~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+|||.|+ |-+|..+++.|...| +.+|.+++...-..+-..| +.+-.....-+++++..|. -+++.+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~G--vg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~---v~V~~~ 74 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTG--FGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPN---VKIVAY 74 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhc--CCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCC---CeEEEE
Confidence 4899996 779999999999998 5688887765322111111 0000111122344444444 467788
Q ss_pred eCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 176 SGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
.+++++.. .-...+++.|+|+.+.-.. ..-..+-++|... + ++||...|.+.
T Consensus 75 ~~~i~~~~------~~~~f~~~~DvVv~a~Dn~--------------~ar~~in~~c~~~-~-ip~I~~gt~G~ 126 (312)
T cd01489 75 HANIKDPD------FNVEFFKQFDLVFNALDNL--------------AARRHVNKMCLAA-D-VPLIESGTTGF 126 (312)
T ss_pred eccCCCcc------chHHHHhcCCEEEECCCCH--------------HHHHHHHHHHHHC-C-CCEEEEecCcc
Confidence 88887643 2345678999999875432 1123455777773 3 57888877643
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.29 Score=52.74 Aligned_cols=125 Identities=17% Similarity=0.131 Sum_probs=74.8
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--H---HHH---HhChhhHHhhhhcccccc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--I---EEL---FASPLFNLLKSVHGQKII 169 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--l---~~~---~~~~~f~~l~~~~p~~~~ 169 (614)
+..++.+|+|.|+ |-+|+.++..|.+.| |.++.+++...-..+-..| + .++ .....-+++++..|.
T Consensus 38 ~~L~~~~VlviG~-GGlGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~--- 111 (392)
T PRK07878 38 KRLKNARVLVIGA-GGLGSPTLLYLAAAG--VGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPL--- 111 (392)
T ss_pred HHHhcCCEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCC---
Confidence 3456789999995 669999999999998 5578877755322211111 1 000 001122344444554
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
-+++.+...++.. ....+++++|+|+-|... +.. -..+-++|.+. + ++||+.++...
T Consensus 112 v~i~~~~~~i~~~-------~~~~~~~~~D~Vvd~~d~--~~~------------r~~ln~~~~~~-~-~p~v~~~~~g~ 168 (392)
T PRK07878 112 VNVRLHEFRLDPS-------NAVELFSQYDLILDGTDN--FAT------------RYLVNDAAVLA-G-KPYVWGSIYRF 168 (392)
T ss_pred cEEEEEeccCChh-------HHHHHHhcCCEEEECCCC--HHH------------HHHHHHHHHHc-C-CCEEEEEeccC
Confidence 4566677666542 456778899999987543 111 12245677774 4 67898887743
Q ss_pred cc
Q psy6053 250 HL 251 (614)
Q Consensus 250 ~~ 251 (614)
.+
T Consensus 169 ~G 170 (392)
T PRK07878 169 EG 170 (392)
T ss_pred EE
Confidence 33
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.98 E-value=2 Score=44.80 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=27.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEE
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM 136 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv 136 (614)
.++|+|.||||+.|..|++.|... |++. +.+..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve-~~~~s 34 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVE-LILIS 34 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeE-EEEee
Confidence 468999999999999999988887 8876 44443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.54 Score=48.94 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=29.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
++|.|.| +|.+|..++..|++.|++ |++..|++
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~---V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHE---VRLWDADP 35 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCe---eEEEeCCH
Confidence 5799999 899999999999999986 88888875
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.43 Score=59.70 Aligned_cols=81 Identities=9% Similarity=0.024 Sum_probs=53.6
Q ss_pred cCCCCCCCCCceeeeeeccccc----ccch-----HHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHhhc
Q psy6053 3 VPQAAPCTVGRYVTYHLSYLCD----FAIM-----FADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANKVN 70 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~~~ 70 (614)
+|..+||||||+++-....... ...+ +.++-.+.+.. ..+...-.|+. +|+++++|...|++.+
T Consensus 948 lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~e~~l~~~~~~~l~~----~~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~ 1023 (1296)
T PRK10252 948 LPLSANGKLDRKALPLPELKAQVPGRAPKTGTETIIAAAFSSLLGC----DVVDADADFFALGGHSLLAMKLAAQLSRQF 1023 (1296)
T ss_pred CCCCCCcChhHHhcCCCcccccccCCCCCCHHHHHHHHHHHHHhCC----CCCCCCcCHHHcCCChHHHHHHHHHHHHHh
Confidence 7999999999999843222110 1111 12222222222 23333333322 9999999999999999
Q ss_pred CCCCccccccCCCCchh
Q psy6053 71 NMNVPYETFYKPPVLSE 87 (614)
Q Consensus 71 ~~~~~~~~~~~~~tl~~ 87 (614)
|.+++..++|++||++.
T Consensus 1024 ~~~l~~~~~~~~pti~~ 1040 (1296)
T PRK10252 1024 ARQVTPGQVMVASTVAK 1040 (1296)
T ss_pred CCCCCHHHHhcCCCHHH
Confidence 99999999999999985
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.86 Score=43.19 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=68.4
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH-------HHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR-------IEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R-------l~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+|+|.|+ |-+|+.+++.|.+.| +.+++..+...-..+...| +.+......-+++++..|. -+++.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~G--vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~---v~i~~~~ 74 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSG--VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPF---VKIEAIN 74 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCC---CEEEEEE
Confidence 4889995 779999999999987 5578888876511111111 1000011112233433444 4566666
Q ss_pred CCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceec
Q psy6053 177 GDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCH 250 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~ 250 (614)
..++. +...++++++|+||.|... +.. -..+.+.|.+. .-++||+.+....+
T Consensus 75 ~~~~~-------~~~~~~l~~~DlVi~~~d~--~~~------------r~~i~~~~~~~-~~ip~i~~~~~~~~ 126 (174)
T cd01487 75 IKIDE-------NNLEGLFGDCDIVVEAFDN--AET------------KAMLAESLLGN-KNKPVVCASGMAGF 126 (174)
T ss_pred eecCh-------hhHHHHhcCCCEEEECCCC--HHH------------HHHHHHHHHHH-CCCCEEEEehhhcc
Confidence 66554 3567788999999988432 111 12355666663 23678877655433
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.45 Score=42.63 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=52.1
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHh-------ChhhHHhhhhccccccCeEEEEeC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFA-------SPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~-------~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
|.|.|+||-||+..++=+-+. ++--+|++|.-.++-+...+..++..- ...++.+++..|. ....+++..|
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~-~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~-~~~~~~v~~G 78 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH-PDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPS-KGPGIEVLSG 78 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC-TTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHH-TTSSSEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhC-CCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhh-cCCCCEEEeC
Confidence 678999999999999876665 666789999876544333222222211 1234445544433 2345566655
Q ss_pred CCCCCCCCCCHHHHHHHhc--cccEEEEc
Q psy6053 178 DAEADELAIKESDRQLLAS--EVDIMIHG 204 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~--~vd~ViH~ 204 (614)
+ +.+.++++ ++|+|+..
T Consensus 79 ~----------~~l~~~~~~~~~D~vv~A 97 (129)
T PF02670_consen 79 P----------EGLEELAEEPEVDIVVNA 97 (129)
T ss_dssp H----------HHHHHHHTHTT-SEEEE-
T ss_pred h----------HHHHHHhcCCCCCEEEEe
Confidence 3 35666665 78998865
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.84 Score=47.77 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+.++|.|.|| |.+|..+...|...|. ..|.++++.+....+. .++ +.. ..+. ......+...
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~--~~l~L~Di~~~~~~g~-~lD-l~~---------~~~~-~~~~~~i~~~--- 65 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL--GDVVLYDVIKGVPQGK-ALD-LKH---------FSTL-VGSNINILGT--- 65 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC--CeEEEEECCCccchhH-HHH-Hhh---------hccc-cCCCeEEEeC---
Confidence 4678999997 9999999988887763 4588888865433221 121 100 0000 0011122110
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCce-EEEEe
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLEL-FVHIS 245 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~-~V~vS 245 (614)
. +++ .++++|+||-+|+...- .....+....|..-.+++.+...+. ..+. ++.+|
T Consensus 66 --~------d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvs 122 (319)
T PTZ00117 66 --N------NYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVT 122 (319)
T ss_pred --C------CHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 1 455 55899999999976542 3445667788888778888877775 4455 55554
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.69 Score=49.43 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=73.5
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH--------HHHHhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI--------EELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl--------~~~~~~~~f~~l~~~~p~~~ 168 (614)
++-.++.+|+|.|+ |-+|+.++..|.+.| |.++.+.+...=..+-..|- ..-.....-+++++-.|+
T Consensus 36 q~~l~~~~VliiG~-GglG~~v~~~La~~G--vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~-- 110 (370)
T PRK05600 36 QERLHNARVLVIGA-GGLGCPAMQSLASAG--VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD-- 110 (370)
T ss_pred HHHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC--
Confidence 34456789999995 669999999999997 56788887763221111110 000011122234444444
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+++.+...++. +...++++++|+||.|.... .. -..+-++|.+. + +++|+.+..
T Consensus 111 -v~i~~~~~~i~~-------~~~~~~~~~~DlVid~~Dn~--~~------------r~~in~~~~~~-~-iP~v~~~~~ 165 (370)
T PRK05600 111 -IRVNALRERLTA-------ENAVELLNGVDLVLDGSDSF--AT------------KFLVADAAEIT-G-TPLVWGTVL 165 (370)
T ss_pred -CeeEEeeeecCH-------HHHHHHHhCCCEEEECCCCH--HH------------HHHHHHHHHHc-C-CCEEEEEEe
Confidence 356666666653 35677889999999886542 11 12344667773 3 578888776
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.7 Score=45.32 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=72.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe-CCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS-GDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~-gDl~~ 181 (614)
++|.|+|+ |.+|..++..|+..+- ..+++++++.++.... ...++.+. .| ......+.. +
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~-~~el~LiD~~~~~~~g--~a~Dl~~~---------~~--~~~~~~v~~~~---- 64 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGL-ADELVLVDVVEDKLKG--EAMDLQHG---------SA--FLKNPKIEADK---- 64 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCccHHHH--HHHHHHHh---------hc--cCCCCEEEECC----
Confidence 58999996 9999999999887753 4578888876532211 11222111 11 111112222 2
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+++. ++++|+||-+|+..+- .++..+.+..|..-.+.+.+..++. +.+.++.+
T Consensus 65 --------dy~~-~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~viv 118 (312)
T cd05293 65 --------DYSV-TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLV 118 (312)
T ss_pred --------CHHH-hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEE
Confidence 3444 5899999999987542 3455678899999999999998885 54544433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.75 E-value=1.3 Score=45.95 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=74.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccc-cCeEEEEeCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKI-IDKVLPISGDAEAD 182 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~-~~~v~~v~gDl~~~ 182 (614)
+|-|.|+ |.+|..++..|+..+- +..+++++..++...+ ...++.+. .+- . ..++.+..+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~~a~g--~a~DL~~~---------~~~-~~~~~~~i~~~~---- 62 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGL-FSEIVLIDVNEGVAEG--EALDFHHA---------TAL-TYSTNTKIRAGD---- 62 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchhhH--HHHHHHhh---------hcc-CCCCCEEEEECC----
Confidence 4788997 9999999999988753 4578888875433221 11222110 110 1 1234454444
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHH--HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEA--LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~--~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
++ .++++|+||-+|+..+- .++ ..+.+..|+.-.+.+....++. +...++.+-|-
T Consensus 63 --------y~-~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsN 120 (307)
T cd05290 63 --------YD-DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITN 120 (307)
T ss_pred --------HH-HhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecC
Confidence 32 35789999999997542 233 3678899999999999998885 55666655553
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.34 Score=50.23 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=32.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
+++|-|.||||-+|+.+++.|.++.+.+..+..+...++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rS 39 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARS 39 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccc
Confidence 368999999999999999999997788776776665543
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.53 Score=54.19 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=73.8
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH-H----HHH---HhChhhHHhhhhcccc
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR-I----EEL---FASPLFNLLKSVHGQK 167 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R-l----~~~---~~~~~f~~l~~~~p~~ 167 (614)
.++..++.+|+|.| .|-+|+.+++.|.+.| |.++.+.+-..=..+...| + .++ .-.-.-+++++-+|.
T Consensus 37 ~Q~kL~~~~VlIvG-~GGlGs~va~~Lar~G--VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~- 112 (679)
T PRK14851 37 EQERLAEAKVAIPG-MGGVGGVHLITMVRTG--IGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF- 112 (679)
T ss_pred HHHHHhcCeEEEEC-cCHHHHHHHHHHHHhC--CCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC-
Confidence 34556788999999 5669999999999998 5577777654322111111 0 000 001112234444444
Q ss_pred ccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 168 IIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 168 ~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
-+|+.+...++. +....+++++|+||.|.-...+... ..+.+.|.+. + .++|+.+.
T Consensus 113 --~~I~~~~~~i~~-------~n~~~~l~~~DvVid~~D~~~~~~r------------~~l~~~c~~~-~-iP~i~~g~ 168 (679)
T PRK14851 113 --LEITPFPAGINA-------DNMDAFLDGVDVVLDGLDFFQFEIR------------RTLFNMAREK-G-IPVITAGP 168 (679)
T ss_pred --CeEEEEecCCCh-------HHHHHHHhCCCEEEECCCCCcHHHH------------HHHHHHHHHC-C-CCEEEeec
Confidence 567777776654 3578888999999977533222211 2356678873 4 46776654
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.54 Score=50.63 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=75.7
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--------HHHHHhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--------IEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--------l~~~~~~~~f~~l~~~~p~~~ 168 (614)
++-.+..+|+|.|+ |-+|+.+++.|.+.| |.++.+.+...-..+-..| +.+..-...-+++++..|.
T Consensus 33 q~~L~~~~VlivG~-GGlG~~va~~La~~G--vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~-- 107 (390)
T PRK07411 33 QKRLKAASVLCIGT-GGLGSPLLLYLAAAG--IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY-- 107 (390)
T ss_pred HHHHhcCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC--
Confidence 34456789999995 559999999999998 5678877765422211111 1111111223345555555
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
-+|+.+...++.. ...++++++|+|+.|.... . .- ..+-++|.+. + +++|+.+...
T Consensus 108 -v~v~~~~~~~~~~-------~~~~~~~~~D~Vvd~~d~~--~----~r--------~~ln~~~~~~-~-~p~v~~~~~g 163 (390)
T PRK07411 108 -CQVDLYETRLSSE-------NALDILAPYDVVVDGTDNF--P----TR--------YLVNDACVLL-N-KPNVYGSIFR 163 (390)
T ss_pred -CeEEEEecccCHH-------hHHHHHhCCCEEEECCCCH--H----HH--------HHHHHHHHHc-C-CCEEEEEEcc
Confidence 5677777777653 3567788999999886532 1 11 1234667763 3 6888887763
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.6 Score=42.75 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=70.6
Q ss_pred EEEecccccccHHHHHHHHhhCC-CccEEEEEEccCCCcCH-HHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSP-NVKKIYILMRQKKGKNA-RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~-~v~~V~~LvR~~~~~~~-~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|.|.||+|.+|..++..|+..+. .+.+|++.++.+..... ...+++... . . ...++..++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~------------~-~-~~~~i~~~~---- 62 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVE------------P-L-ADIKVSITD---- 62 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhh------------h-c-cCcEEEECC----
Confidence 46899999999999999998861 23568888886533222 111221110 0 1 011221111
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChh-HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFD-EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+..+.++++|+||-+|+..+.. .........|+.-.+.+.+..++. ..+.++.+-|
T Consensus 63 -------d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~t 119 (263)
T cd00650 63 -------DPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVS 119 (263)
T ss_pred -------chHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 3455678999999998875432 233456777888888998888875 4444443333
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.30 E-value=2.2 Score=45.27 Aligned_cols=112 Identities=11% Similarity=0.139 Sum_probs=71.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe-CCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS-GDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~-gDl~~ 181 (614)
++|.|+|+ |.+|..++..|+..+. ..+++++++.+....++ ..++.+. .+ ......+.. +|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~LiDi~~~~~~g~--a~DL~~~---------~~--~~~~~~i~~~~d--- 99 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDL-ADELALVDVNPDKLRGE--MLDLQHA---------AA--FLPRTKILASTD--- 99 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCCchhhHH--HHHHHhh---------hh--cCCCCEEEeCCC---
Confidence 69999996 9999999999987753 35788888865332211 1122111 01 112222222 22
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
++. ++++|+||-+|+..+ ..++..+.+..|+.-.+.+.+..++. ..+.++.
T Consensus 100 ---------y~~-~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivi 151 (350)
T PLN02602 100 ---------YAV-TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILL 151 (350)
T ss_pred ---------HHH-hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEE
Confidence 333 579999999999753 23445677888999999999888885 4444443
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.6 Score=43.55 Aligned_cols=121 Identities=10% Similarity=0.110 Sum_probs=72.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----H---HHHhChhhHHhhhhccccccCeEEEE
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----E---ELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~---~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+|||.| .|-+|..+++.|.+.| +.++.+++...-..+-..|- + +....-.-+++++..|+ -+++.+
T Consensus 1 kVlvvG-~GGlG~eilk~La~~G--vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~---v~i~~~ 74 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMG--FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPN---CKVVPY 74 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC--CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCC---CEEEEE
Confidence 488888 5679999999999997 56888887764222211110 0 01111122344554554 567888
Q ss_pred eCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceecc
Q psy6053 176 SGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHL 251 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~ 251 (614)
.+++++.. +.-...+++.|+|+.+.-. +..-+.+-++|.+. + +++|+.+|..-.|
T Consensus 75 ~~~i~~~~-----~~~~~f~~~~DvVi~a~Dn--------------~~aR~~ln~~c~~~-~-iplI~~g~~G~~G 129 (234)
T cd01484 75 QNKVGPEQ-----DFNDTFFEQFHIIVNALDN--------------IIARRYVNGMLIFL-I-VPLIESGTEGFKG 129 (234)
T ss_pred eccCChhh-----hchHHHHhCCCEEEECCCC--------------HHHHHHHHHHHHHc-C-CCEEEEcccCCce
Confidence 88886532 0124567899999987432 22224466777774 3 6788887764333
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=91.13 E-value=2.1 Score=47.94 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=68.6
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+.++..+|+|.| +|-+|+.++..|++.|.. +|.+++-..- .+...|+.++.+. .++ ..+.+.+-..
T Consensus 125 ~~qR~akVlVlG-~Gg~~s~lv~sL~~sG~~--~I~~vd~D~v-~SNlnRIgEl~e~------A~~----~n~~v~v~~i 190 (637)
T TIGR03693 125 ELSRNAKILAAG-SGDFLTKLVRSLIDSGFP--RFHAIVTDAE-EHALDRIHELAEI------AEE----TDDALLVQEI 190 (637)
T ss_pred hhhhcccEEEEe-cCchHHHHHHHHHhcCCC--cEEEEecccc-chhhhHHHHHHHH------HHH----hCCCCceEec
Confidence 446788999999 666899999999999854 6877755443 4445666665221 111 1234444444
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
|.+. .+++..++++.|+|++.+-..... . .+.+-+.|.+.
T Consensus 191 ~~~~------~~dl~ev~~~~DiVi~vsDdy~~~----~--------Lr~lN~acvke 230 (637)
T TIGR03693 191 DFAE------DQHLHEAFEPADWVLYVSDNGDID----D--------LHALHAFCKEE 230 (637)
T ss_pred cCCc------chhHHHhhcCCcEEEEECCCCChH----H--------HHHHHHHHHHc
Confidence 4443 348999999999999987654322 1 24456677773
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.3 Score=46.97 Aligned_cols=123 Identities=13% Similarity=0.213 Sum_probs=68.8
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH------HHHHh-ChhhHHhhhhcccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI------EELFA-SPLFNLLKSVHGQKII 169 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl------~~~~~-~~~f~~l~~~~p~~~~ 169 (614)
++..++++|+|.| .|.+|+++++.|.+.| |.+|.+.+-..=..+-..|. +++-+ .+--+.+++.... ..
T Consensus 171 q~kL~~~~VaIVG-~GG~GS~Va~~LAR~G--VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~-in 246 (393)
T PRK06153 171 SAKLEGQRIAIIG-LGGTGSYILDLVAKTP--VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN-MR 246 (393)
T ss_pred HHHHhhCcEEEEc-CCccHHHHHHHHHHcC--CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHH-hC
Confidence 5567789999999 5669999999999997 66888776543211111111 01000 0000111111111 23
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
.++..+...++. +... .+.++|+||-|.-. ..+-..+.++|.+. + .++|.++-.
T Consensus 247 ~~I~~~~~~I~~-------~n~~-~L~~~DiV~dcvDn--------------~~aR~~ln~~a~~~-g-IP~Id~G~~ 300 (393)
T PRK06153 247 RGIVPHPEYIDE-------DNVD-ELDGFTFVFVCVDK--------------GSSRKLIVDYLEAL-G-IPFIDVGMG 300 (393)
T ss_pred CeEEEEeecCCH-------HHHH-HhcCCCEEEEcCCC--------------HHHHHHHHHHHHHc-C-CCEEEeeec
Confidence 456666655532 2444 45899999988642 22223455677763 3 467776654
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=90.99 E-value=4.6 Score=43.96 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=84.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHH--------HHHHHHHhChhhHHhhhhccccccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNAR--------QRIEELFASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~--------~Rl~~~~~~~~f~~l~~~~p~~~~~ 170 (614)
..+..+|+|.|++| +|..+++.|...| |.++++++-..-..+-. +-+.+-.....-+.+.+-+|+ -
T Consensus 17 ~L~~s~VlliG~gg-lGsEilKNLvL~G--Ig~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~---V 90 (425)
T cd01493 17 ALESAHVCLLNATA-TGTEILKNLVLPG--IGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPD---V 90 (425)
T ss_pred HHhhCeEEEEcCcH-HHHHHHHHHHHcC--CCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCC---C
Confidence 34567899999777 9999999999987 66788776543111000 000000111122344444555 3
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceec
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCH 250 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~ 250 (614)
+++++..++.+.. +.-..++.+.|+||-+-. . ... ...+.+.|.+. + .+||+++|.+.+
T Consensus 91 ~i~~~~e~~~~ll-----~~~~~f~~~fdiVI~t~~--~----~~~--------~~~L~~~c~~~-~-iPlI~~~s~G~~ 149 (425)
T cd01493 91 NGSAVEESPEALL-----DNDPSFFSQFTVVIATNL--P----EST--------LLRLADVLWSA-N-IPLLYVRSYGLY 149 (425)
T ss_pred EEEEEecccchhh-----hhHHHHhcCCCEEEECCC--C----HHH--------HHHHHHHHHHc-C-CCEEEEecccCE
Confidence 5566666554311 123456788999984321 1 111 13456778883 4 579999988443
Q ss_pred cC------CcccccccCCC-------CCChhHHHHHHhhcchh
Q psy6053 251 LQ------EKVLYEKPYPP-------PTDPHKLIERVEMMSED 280 (614)
Q Consensus 251 ~~------~~~i~E~~~~~-------p~~~~~~~~~~~~~~~~ 280 (614)
|. ...+-|..... .-.+.++.+.++..|-+
T Consensus 150 G~v~v~~~~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~ 192 (425)
T cd01493 150 GYIRIQLKEHTIVESHPDNALEDLRLDNPFPELREHADSIDLD 192 (425)
T ss_pred EEEEEEECCeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCc
Confidence 32 12333332221 11256777776666533
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.57 Score=44.16 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=30.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
-.++++|+|.|+.+.+|..+++.|.+.|.+ |++..|.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~---V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNAT---VTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCE---EEEEECC
Confidence 367899999999777899999999998753 7777764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=90.67 E-value=3.3 Score=42.87 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=24.1
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEE
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKI 132 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V 132 (614)
+|.|.||||+.|..|++.|.+. |++.-+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~H-P~~el~ 30 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGR-DDIELL 30 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCC-CCeEEE
Confidence 6999999999999999988887 886433
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.86 Score=45.13 Aligned_cols=72 Identities=18% Similarity=0.360 Sum_probs=53.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|++.|.| .|-+|..+++.|.+.|++ |.+..+.+ ++.++... .......+.||-+++
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~---Vv~Id~d~------~~~~~~~~--------------~~~~~~~v~gd~t~~ 56 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHN---VVLIDRDE------ERVEEFLA--------------DELDTHVVIGDATDE 56 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCc---eEEEEcCH------HHHHHHhh--------------hhcceEEEEecCCCH
Confidence 5677877 688999999999999998 77777764 33333211 123578899999987
Q ss_pred CCCCCHHHHHHH-hccccEEEEc
Q psy6053 183 ELAIKESDRQLL-ASEVDIMIHG 204 (614)
Q Consensus 183 ~lGLs~~~~~~l-~~~vd~ViH~ 204 (614)
+ .++++ ++++|+++=+
T Consensus 57 ~------~L~~agi~~aD~vva~ 73 (225)
T COG0569 57 D------VLEEAGIDDADAVVAA 73 (225)
T ss_pred H------HHHhcCCCcCCEEEEe
Confidence 6 67777 6789999843
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=89.99 E-value=2.3 Score=43.67 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=70.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH--------HHHHHHHHhChhhHHhhhhccccccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA--------RQRIEELFASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~--------~~Rl~~~~~~~~f~~l~~~~p~~~~~ 170 (614)
.++..+|||.|+. -+|..+++.|...| |++|.+.+-..-..+- ++.+.+-......+++++.+|. -
T Consensus 16 kL~~s~VLIvG~g-GLG~EiaKnLalaG--Vg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~---V 89 (286)
T cd01491 16 KLQKSNVLISGLG-GLGVEIAKNLILAG--VKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPY---V 89 (286)
T ss_pred HHhcCcEEEEcCC-HHHHHHHHHHHHcC--CCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCC---C
Confidence 3456789999965 49999999999998 5578777654311110 0111111112233456655555 5
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
+|+++.+++.. +.+.+.|+||-+.. + +... ..+-++|++. + .+|++..|..
T Consensus 90 ~V~~~~~~~~~-----------~~l~~fdvVV~~~~--~----~~~~--------~~in~~c~~~-~-ipfI~a~~~G 140 (286)
T cd01491 90 PVTVSTGPLTT-----------DELLKFQVVVLTDA--S----LEDQ--------LKINEFCHSP-G-IKFISADTRG 140 (286)
T ss_pred EEEEEeccCCH-----------HHHhcCCEEEEecC--C----HHHH--------HHHHHHHHHc-C-CEEEEEeccc
Confidence 67777665321 34578999998754 2 2222 2344778873 4 5788888763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.34 Score=44.55 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=30.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++|+|+|+ |.+|..+++.|.+.| ..+|++..|+.
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g--~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELG--AAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEcCCH
Confidence 44689999997 999999999999885 23588888863
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.59 Score=49.12 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=30.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
++++|.|.||||++|..|++-|.++.+.+.++..+...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~ 40 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE 40 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence 45789999999999999999888764555677777544
|
|
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.62 Score=36.10 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=35.9
Q ss_pred cCCCchhhhh-hhhHHHHHHHHHHhhcCCCCccccccCCCCchhh
Q psy6053 45 DFSLPLEFIR-CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEE 88 (614)
Q Consensus 45 ~~~~~~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~ 88 (614)
+...++.... +|+.+.++...+++.+|++++..+++++||+.+-
T Consensus 19 ~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l 63 (67)
T PF00550_consen 19 DPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDL 63 (67)
T ss_dssp STTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHH
T ss_pred CCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHH
Confidence 3334443333 9999999999999999999999999999998753
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.71 E-value=2.5 Score=43.88 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=67.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|-|.|| |.+|..++..+...|.. +|++.++.+... +....++.+. . .+.....++.. .+
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~--ev~L~D~~~~~~--~~~~~dl~~~-----~---~~~~~~~~i~~-~~---- 63 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG--DVVLFDIVEGVP--QGKALDIAEA-----A---PVEGFDTKITG-TN---- 63 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe--EEEEEECCCchh--HHHHHHHHhh-----h---hhcCCCcEEEe-CC----
Confidence 368999998 99999999999887542 588888854322 1111111110 0 00000011110 11
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCce-EEEEe
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLEL-FVHIS 245 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~-~V~vS 245 (614)
+++. ++++|+||-+++... ...+..+.+.-|+.-.+.+++...+. ..+. ++.+|
T Consensus 64 --------d~~~-~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~-~~~~~viv~t 119 (307)
T PRK06223 64 --------DYED-IAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY-APDAIVIVVT 119 (307)
T ss_pred --------CHHH-HCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 3433 579999999987643 23344456677888888888777664 3333 44443
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.65 Score=48.93 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=28.8
Q ss_pred CcEEEEecccccccHHHHHHHHh-hCCCccEEEEEEcc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILR-KSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~-~g~~v~~V~~LvR~ 138 (614)
+++|-|.||||++|..|++-|.+ ...++.++..+...
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~ 42 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK 42 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc
Confidence 46899999999999999998884 44555667666544
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.4 Score=52.17 Aligned_cols=124 Identities=12% Similarity=0.128 Sum_probs=74.6
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH-H----HHH---HhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR-I----EEL---FASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R-l----~~~---~~~~~f~~l~~~~p~~~ 168 (614)
++-.+..+|+|.| .|.+|+.+++.|.+.| |.++.+.+-..=..+...| + .++ .-...-+++++-+|.
T Consensus 327 Q~kL~~srVlVvG-lGGlGs~ia~~LAraG--VG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~-- 401 (989)
T PRK14852 327 QRRLLRSRVAIAG-LGGVGGIHLMTLARTG--IGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF-- 401 (989)
T ss_pred HHHHhcCcEEEEC-CcHHHHHHHHHHHHcC--CCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC--
Confidence 3456778999999 5669999999999998 5678777655322211122 0 000 001122234444454
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+|+++...++. +..+.+++++|+||.|.-...++ ..+.+.+.|.+. + .++|+.++.
T Consensus 402 -v~I~~~~~~I~~-------en~~~fl~~~DiVVDa~D~~~~~------------~rr~l~~~c~~~-~-IP~I~ag~~ 458 (989)
T PRK14852 402 -LDIRSFPEGVAA-------ETIDAFLKDVDLLVDGIDFFALD------------IRRRLFNRALEL-G-IPVITAGPL 458 (989)
T ss_pred -CeEEEEecCCCH-------HHHHHHhhCCCEEEECCCCccHH------------HHHHHHHHHHHc-C-CCEEEeecc
Confidence 467777666544 45788889999999765332211 113466677773 4 578887774
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.91 Score=46.46 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
++|++|+|.|+++.+|+-+...|++.|.. |++..+
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gat---Vtv~~s 190 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNAS---VTILHS 190 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCe---EEEEeC
Confidence 57999999999999999999999988755 555444
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=89.47 E-value=2.7 Score=36.40 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=46.2
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|+|.|. |-+|..+++.|.+.+. +|.++.+.+ ++.+++ ....+.++.||.++++
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~---~vvvid~d~------~~~~~~----------------~~~~~~~i~gd~~~~~- 53 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGI---DVVVIDRDP------ERVEEL----------------REEGVEVIYGDATDPE- 53 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTS---EEEEEESSH------HHHHHH----------------HHTTSEEEES-TTSHH-
T ss_pred eEEEcC-CHHHHHHHHHHHhCCC---EEEEEECCc------HHHHHH----------------Hhcccccccccchhhh-
Confidence 577785 6799999999999753 477887763 333333 1134779999999976
Q ss_pred CCCHHHHHHH-hccccEEEEcc
Q psy6053 185 AIKESDRQLL-ASEVDIMIHGA 205 (614)
Q Consensus 185 GLs~~~~~~l-~~~vd~ViH~A 205 (614)
.++++ +++++.|+=+.
T Consensus 54 -----~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 54 -----VLERAGIEKADAVVILT 70 (116)
T ss_dssp -----HHHHTTGGCESEEEEES
T ss_pred -----HHhhcCccccCEEEEcc
Confidence 55554 35788887544
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.38 Score=67.29 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=57.5
Q ss_pred cCCCCCCCCCceeeeeecccccc------c-----chHHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHh
Q psy6053 3 VPQAAPCTVGRYVTYHLSYLCDF------A-----IMFADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANK 68 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~ 68 (614)
+|..+||||||+++-........ . ..+..+=.+.|.. .+++..-.|+. ||+++++|+..+++
T Consensus 4209 lP~t~~GKidr~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~----~~i~~~d~Ff~lGg~Sl~a~~l~~~~~~ 4284 (4334)
T PRK05691 4209 LPLNANGKLDRKALPALDIGQLQSQAYLAPRNELEQTLATIWADVLKV----ERVGVHDNFFELGGHSLLATQIASRVQK 4284 (4334)
T ss_pred CCCCCCCcccHhhcCCCccccccccccCCCCCHHHHHHHHHHHHHhCC----CcCCCCCchhhcCCcHHHHHHHHHHHHH
Confidence 79999999999998443222110 0 1133333444432 23444444433 99999999999999
Q ss_pred hcCCCCccccccCCCCchhhh
Q psy6053 69 VNNMNVPYETFYKPPVLSEEY 89 (614)
Q Consensus 69 ~~~~~~~~~~~~~~~tl~~~~ 89 (614)
.+|+++++.++|++||+++-.
T Consensus 4285 ~~~~~~~~~~~f~~~t~~~la 4305 (4334)
T PRK05691 4285 ALQRNVPLRAMFECSTVEELA 4305 (4334)
T ss_pred HhCCCccHHHHhcCCCHHHHH
Confidence 999999999999999998633
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.41 Score=50.25 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
|.+|||+||||-+|...++-+...|..
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~ 169 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGAT 169 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCc
Confidence 789999999999999999877777753
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=4.9 Score=42.12 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=70.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe-CCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS-GDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~-gDl 179 (614)
+.++|.|.| +|.+|..++..++..|. ..|+++++.+.... .++++.. .. .+. ......+.. +
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl--~~i~LvDi~~~~~~-~~~ld~~-~~---------~~~-~~~~~~I~~~~-- 67 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQ-GKALDIS-HS---------NVI-AGSNSKVIGTN-- 67 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC--CeEEEEeCCCchhh-HHHHHHH-hh---------hhc-cCCCeEEEECC--
Confidence 447899999 59999999998887764 34888888765422 1222211 00 000 111122221 2
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccCh-hH-----HHHHHHHHhHHHHHHHHHHHHHcCCCc-eEEEEe
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRF-DE-----ALKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHIS 245 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~-----~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~V~vS 245 (614)
+++ .++++|+||.+|+..+- .. +..+.+..|+.-.+.+.+...+. ..+ .++.+|
T Consensus 68 ----------d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~s 128 (321)
T PTZ00082 68 ----------NYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVIT 128 (321)
T ss_pred ----------CHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 343 35899999999976431 12 45667788988888888888775 444 355444
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.94 E-value=4.7 Score=41.95 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=71.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|.|+ |.+|..++..|+..|. +.+|.+++|...... ....++... .+ ......+..+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~~~--g~a~dl~~~---------~~--~~~~~~i~~~----- 60 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAKAE--GEAMDLAHG---------TP--FVKPVRIYAG----- 60 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchhhh--hHHHHHHcc---------cc--ccCCeEEeeC-----
Confidence 47999997 9999999999999874 245888888653211 111111111 01 1112222222
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+++ .++++|+||-+|+... ...+..+....|+.-.+.+.+..++. +.+.++.+-|
T Consensus 61 -------d~~-~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~t 116 (308)
T cd05292 61 -------DYA-DCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVT 116 (308)
T ss_pred -------CHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 233 3589999999998743 23445567888999888888888875 4445554444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.81 Score=46.93 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=29.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
.+||+|+|.|++|.+|+.++..|++.|. +|++..|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga---tVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA---TVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC---EEEEEeC
Confidence 5789999999999999999999998875 3666555
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.87 E-value=1 Score=46.21 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=31.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++|+|+|+ |.+|+.++..|...| +.+|++..|+.
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g--~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLG--VAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEEeCCH
Confidence 56789999996 999999999999887 34699999974
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.1 Score=42.92 Aligned_cols=38 Identities=24% Similarity=0.440 Sum_probs=32.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
.++|.|.||+|-+|+.+++.+.+. +++.-+-++.|+++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCc
Confidence 478999999999999999999888 66666778888865
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=88.50 E-value=25 Score=38.69 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=62.2
Q ss_pred cccCCcEEEEeccc---ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 98 ETFTGKTLFMTGAS---GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 98 ~~~~~~~VLITGaT---GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
.+++.++|.|.|+| |-+|..+++.|++.|+. .+||.+...... ...+.+
T Consensus 3 ~l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~-g~v~~Vnp~~~~---------------------------i~G~~~ 54 (447)
T TIGR02717 3 HLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYK-GKIYPVNPKAGE---------------------------ILGVKA 54 (447)
T ss_pred cccCCCEEEEEccCCCCCchHHHHHHHHHhCCCC-CcEEEECCCCCc---------------------------cCCccc
Confidence 46788999999998 77899999999998875 357755543211 011111
Q ss_pred EeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 175 ISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
-+ .++++-+.+|.++=+... ..+..+++.|.+ .+++.++.+|+-+.
T Consensus 55 ------~~-------sl~~lp~~~Dlavi~vp~---------------~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 55 ------YP-------SVLEIPDPVDLAVIVVPA---------------KYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred ------cC-------CHHHCCCCCCEEEEecCH---------------HHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 11 244455578877754331 123557777888 48999999888765
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=88.47 E-value=2.8 Score=43.61 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=65.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|-|.|+ |.+|..++..|+..|.. .|+++++.+.-.. .+..++.+...+. . ...++.+ .+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~--~VvlvDi~~~l~~--g~a~d~~~~~~~~-------~-~~~~i~~-t~----- 62 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA--DLVLLDVVEGIPQ--GKALDMYEASPVG-------G-FDTKVTG-TN----- 62 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCCChhH--HHHHhhhhhhhcc-------C-CCcEEEe-cC-----
Confidence 57999996 99999999999988752 4888887543211 1111111100000 0 1112211 12
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
+++. ++++|+||=+|+...- +++..+....|..-.+.+++...+.
T Consensus 63 -------d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~ 108 (305)
T TIGR01763 63 -------NYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH 108 (305)
T ss_pred -------CHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5789999999997542 3345567888999999988877774
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >KOG1494|consensus | Back alignment and domain information |
|---|
Probab=88.46 E-value=4.3 Score=40.95 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=75.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC-CCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK-KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~-~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+-+|.|.||.|.||+-|.- |++..|.|....+.+-.. .+-.+ -+.. -+ ....+.-+.|
T Consensus 28 ~~KVAvlGAaGGIGQPLSL-LlK~np~Vs~LaLYDi~~~~GVaa--DlSH--------------I~-T~s~V~g~~g--- 86 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSL-LLKLNPLVSELALYDIANTPGVAA--DLSH--------------IN-TNSSVVGFTG--- 86 (345)
T ss_pred cceEEEEecCCccCccHHH-HHhcCcccceeeeeecccCCcccc--cccc--------------cC-CCCceeccCC---
Confidence 4689999999999998764 556668876655544332 22110 0000 00 1111211111
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
++.++..++++|+|+--||..+ .....++++++|-.-.+.+..++.++ -.+.++.+=|-=+
T Consensus 87 -------~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~-cP~A~i~vIsNPV 148 (345)
T KOG1494|consen 87 -------ADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKC-CPNALILVISNPV 148 (345)
T ss_pred -------hhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhh-CccceeEeecCcc
Confidence 3478899999999999999765 23455788999999999999888875 4455555544433
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.1 Score=45.94 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=55.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--H--------HHHHhChhhHHhhhhccccccCeEE
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--I--------EELFASPLFNLLKSVHGQKIIDKVL 173 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--l--------~~~~~~~~f~~l~~~~p~~~~~~v~ 173 (614)
+|||.|+ |-+|..+++.|.+.| |.+|..++...-..+...| + .+......-+++++-.|. -+++
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aG--Vg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~---v~v~ 74 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWG--VRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPS---IDAT 74 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCC---cEEE
Confidence 4889985 669999999999997 6678777654311111111 0 000111223345554554 3455
Q ss_pred EEeCCCCCC----------CCCCCHHHHHHHhccccEEEEccc
Q psy6053 174 PISGDAEAD----------ELAIKESDRQLLASEVDIMIHGAA 206 (614)
Q Consensus 174 ~v~gDl~~~----------~lGLs~~~~~~l~~~vd~ViH~AA 206 (614)
.+...+.-+ ..-.+.+.+++++++.|+||-+.-
T Consensus 75 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD 117 (307)
T cd01486 75 GIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD 117 (307)
T ss_pred EeeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCC
Confidence 555443111 112345568889999999998863
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=87.92 E-value=2.8 Score=45.90 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=51.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
..++|+|.|+ |.+|..+++.|.+.|++ |+++.+.+ ++++++. + ....+.++.||.+
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~---v~vid~~~------~~~~~~~---------~-----~~~~~~~i~gd~~ 285 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYS---VKLIERDP------ERAEELA---------E-----ELPNTLVLHGDGT 285 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCe---EEEEECCH------HHHHHHH---------H-----HCCCCeEEECCCC
Confidence 4688999997 99999999999998876 67776653 2222221 1 1135678999999
Q ss_pred CCCCCCCHHHHHH-HhccccEEEEcc
Q psy6053 181 ADELAIKESDRQL-LASEVDIMIHGA 205 (614)
Q Consensus 181 ~~~lGLs~~~~~~-l~~~vd~ViH~A 205 (614)
+++ .+++ -+++++.|+-+.
T Consensus 286 ~~~------~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 286 DQE------LLEEEGIDEADAFIALT 305 (453)
T ss_pred CHH------HHHhcCCccCCEEEECC
Confidence 865 4533 346789888443
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.79 Score=47.51 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=31.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
...+.+|+|+||+|.+|..+++.+...|.+ |++++|+.
T Consensus 160 ~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~---v~~~~~~~ 197 (332)
T cd08259 160 VKKGDTVLVTGAGGGVGIHAIQLAKALGAR---VIAVTRSP 197 (332)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCe---EEEEeCCH
Confidence 345789999999999999999999988765 78887754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=87.46 E-value=3.7 Score=36.07 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=24.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEE-Ecc
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQ 138 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~ 138 (614)
+|.|+|++|.+|..+++.|.+. +++ ++.++ .|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~-~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDF-EVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCc-eEEEEEech
Confidence 4789999999999999999886 443 35555 443
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.9 Score=44.39 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=31.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
.++++|+|.|| |..++.++..|...| +++|++..|...
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g--~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEG--LKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEeCCcc
Confidence 46789999996 556999999998876 458999999754
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.19 E-value=3.4 Score=40.93 Aligned_cols=123 Identities=16% Similarity=0.210 Sum_probs=68.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH-HHHHHh-------ChhhHHhhhhccccccCe
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR-IEELFA-------SPLFNLLKSVHGQKIIDK 171 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R-l~~~~~-------~~~f~~l~~~~p~~~~~~ 171 (614)
++..+|.|.|. |.+|++.++.|.|+| +.++.+++-..=..+...| +..++. .-.-++++.-.|+ -+
T Consensus 28 l~~~~V~VvGi-GGVGSw~veALaRsG--ig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~---c~ 101 (263)
T COG1179 28 LKQAHVCVVGI-GGVGSWAVEALARSG--IGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPE---CE 101 (263)
T ss_pred HhhCcEEEEec-CchhHHHHHHHHHcC--CCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCC---ce
Confidence 44578999995 669999999999998 5577776644321111111 111111 1112233333343 23
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHhc-cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceec
Q psy6053 172 VLPISGDAEADELAIKESDRQLLAS-EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCH 250 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs~~~~~~l~~-~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~ 250 (614)
|..+.-=++ ++.++.++. +.|.||.+-= |+..-..|+..|.+. +. -.+||..+.
T Consensus 102 V~~~~~f~t-------~en~~~~~~~~~DyvIDaiD--------------~v~~Kv~Li~~c~~~-ki---~vIss~Gag 156 (263)
T COG1179 102 VTAINDFIT-------EENLEDLLSKGFDYVIDAID--------------SVRAKVALIAYCRRN-KI---PVISSMGAG 156 (263)
T ss_pred EeehHhhhC-------HhHHHHHhcCCCCEEEEchh--------------hhHHHHHHHHHHHHc-CC---CEEeecccc
Confidence 333332222 335666654 6899998732 333445689999994 43 456777655
Q ss_pred cCC
Q psy6053 251 LQE 253 (614)
Q Consensus 251 ~~~ 253 (614)
+..
T Consensus 157 ~k~ 159 (263)
T COG1179 157 GKL 159 (263)
T ss_pred CCC
Confidence 443
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.13 E-value=0.29 Score=67.87 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=55.2
Q ss_pred cCCCCCCCCCceeeeeecccc------ccc----chHHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHhh
Q psy6053 3 VPQAAPCTVGRYVTYHLSYLC------DFA----IMFADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANKV 69 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~~ 69 (614)
+|..+||||||+++....... .+. ..+.++-.+.+.+ ..+...-+|+. +|+.+++|+..+++.
T Consensus 999 lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~~----~~i~~~d~Ff~lGgdSl~a~~l~~~~~~~ 1074 (3956)
T PRK12467 999 LPLTPNGKLDRKALPKPDASAVQATFVAPQTELEKRLAAIWADVLKV----ERVGLTDNFFELGGHSLLATQVISRVRQR 1074 (3956)
T ss_pred cCCCCCCCcCHhhcCCcccccccccccCCCCHHHHHHHHHHHHHhCC----CCCCCCCCchhccCccHHHHHHHHHHHHH
Confidence 799999999999984321110 000 1123333333322 23444444433 999999999999999
Q ss_pred cCCCCccccccCCCCchh
Q psy6053 70 NNMNVPYETFYKPPVLSE 87 (614)
Q Consensus 70 ~~~~~~~~~~~~~~tl~~ 87 (614)
+|+.++..++|++||+++
T Consensus 1075 ~g~~l~~~~lf~~~t~~~ 1092 (3956)
T PRK12467 1075 LGIQVPLRTLFEHQTLAG 1092 (3956)
T ss_pred hCCCcchHHhhccchHHH
Confidence 999999999999999975
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=86.72 E-value=0.74 Score=64.52 Aligned_cols=81 Identities=12% Similarity=0.222 Sum_probs=56.1
Q ss_pred cCCCCCCCCCceeeeeecccccc--------cchHHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHhhcC
Q psy6053 3 VPQAAPCTVGRYVTYHLSYLCDF--------AIMFADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANKVNN 71 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~~~~ 71 (614)
+|..+||||||+++-..-+.... ...+.++-.+.+.+. .++..-+|+. +|+.+++|+..+++.+|
T Consensus 1609 lP~t~~GKidr~~L~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~~----~i~~~d~Ff~lGGdSl~a~~l~~~~~~~~~ 1684 (4334)
T PRK05691 1609 MPLGPSGKLDRRALPEPVWQQREHVEPRTELQQQIAAIWREVLGLP----RVGLRDDFFALGGHSLLATQIVSRTRQACD 1684 (4334)
T ss_pred cCCCCCCCcChhhcCcccccccccCCCCCHHHHHHHHHHHHHhCCC----CCCCCCchHHhcccHHHHHHHHHHHHHHhC
Confidence 79999999999987432221110 111333333444332 3444445533 99999999999999999
Q ss_pred CCCccccccCCCCchh
Q psy6053 72 MNVPYETFYKPPVLSE 87 (614)
Q Consensus 72 ~~~~~~~~~~~~tl~~ 87 (614)
+.+++.++|++||+++
T Consensus 1685 ~~l~~~~~f~~~tl~~ 1700 (4334)
T PRK05691 1685 VELPLRALFEASELGA 1700 (4334)
T ss_pred CCcchhhhhcCCcHHH
Confidence 9999999999999974
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=86.64 E-value=1.8 Score=49.01 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=58.3
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH-----HHHHHh------ChhhHHhhhhccc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR-----IEELFA------SPLFNLLKSVHGQ 166 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R-----l~~~~~------~~~f~~l~~~~p~ 166 (614)
+..++.+|||.|+ |-||..+++.|++.| |++|..++...=..+...| .++..+ ...-+++++-.|.
T Consensus 334 ekL~~~kVLIvGa-GGLGs~VA~~La~~G--Vg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~ 410 (664)
T TIGR01381 334 ERYSQLKVLLLGA-GTLGCNVARCLIGWG--VRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPS 410 (664)
T ss_pred HHHhcCeEEEECC-cHHHHHHHHHHHHcC--CCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCC
Confidence 3456789999995 669999999999997 6688888765322111111 111110 1122344444554
Q ss_pred cccCeEEEEeCCCCCCCCCCC----------HHHHHHHhccccEEEEcc
Q psy6053 167 KIIDKVLPISGDAEADELAIK----------ESDRQLLASEVDIMIHGA 205 (614)
Q Consensus 167 ~~~~~v~~v~gDl~~~~lGLs----------~~~~~~l~~~vd~ViH~A 205 (614)
-+++.+...+.-+.--++ .+.+..++++.|+||.|.
T Consensus 411 ---v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~t 456 (664)
T TIGR01381 411 ---IQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLL 456 (664)
T ss_pred ---cEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECC
Confidence 344444444311111111 135778889999999874
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.5 Score=45.17 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=30.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
++||+|.|.|.+|.+|+.++..|++.|.. |++..|
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~gat---Vtv~~~ 191 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHCS---VTVVHS 191 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE---EEEECC
Confidence 57999999999999999999999999876 555544
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.42 E-value=2.2 Score=46.34 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=51.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+++|+|.|+ |-+|+.++..|...|. .+|++..|... |.+++.+ + . ....++.
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~--~~I~V~nRt~~------ra~~La~---------~----~-~~~~~~~--- 232 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAP--KQIMLANRTIE------KAQKITS---------A----F-RNASAHY--- 232 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCC--CEEEEECCCHH------HHHHHHH---------H----h-cCCeEec---
Confidence 56899999996 8899999999998874 47999999742 2222211 0 1 0011111
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccCh
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRF 210 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~ 210 (614)
-+++..++.++|+||+|-+..++
T Consensus 233 --------~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 233 --------LSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred --------HHHHHHHhccCCEEEECcCCCCe
Confidence 12567778899999999887553
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.28 E-value=2.1 Score=44.06 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=31.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++|+|.|+ |..|+.++..|...| +.+|+++.|..
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G--~~~I~I~nR~~ 161 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLG--VERLTIFDVDP 161 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcC--CCEEEEECCCH
Confidence 45789999995 669999999999987 45799999974
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=86.23 E-value=2.2 Score=39.87 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=23.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
.+||+|+|.|.++.+|+-|...|++++..
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~at 62 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGAT 62 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-E
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCe
Confidence 67999999999999999999999998654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.16 E-value=11 Score=39.26 Aligned_cols=34 Identities=15% Similarity=0.417 Sum_probs=26.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
+.+|.|.||||++|..|++-|.+. |++ ++..+..
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~-~l~~~~s 35 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDI-ELLSIPE 35 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCe-EEEEEec
Confidence 358999999999999999977766 775 3444443
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=86.16 E-value=0.7 Score=45.49 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=29.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
|+|.|.||+|.+|+.+...|.+.|++ |.+..|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~---V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNK---IIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCE---EEEEEcCH
Confidence 57999999999999999999999876 66777753
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=85.97 E-value=1.2 Score=47.15 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=30.5
Q ss_pred cEEEEecccccccHHHHHHHH-hhCCCccEEEEEEccCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKIL-RKSPNVKKIYILMRQKK 140 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll-~~g~~v~~V~~LvR~~~ 140 (614)
++|-|.||||-+|+.+++.|. ++...+.+++.+.-++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s 39 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQL 39 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhh
Confidence 478999999999999999998 66666667777765543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=0.76 Score=63.88 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=55.7
Q ss_pred cCCCCCCCCCceeeeeecccc----cccc-----hHHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHhhc
Q psy6053 3 VPQAAPCTVGRYVTYHLSYLC----DFAI-----MFADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANKVN 70 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~~~ 70 (614)
+|..+||||||+++-...... .... .+..+-.+.+.+. .+...-+|+. +|+++++|+..+++.+
T Consensus 3575 lP~t~~GKidR~~L~~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~~~----~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~ 3650 (3956)
T PRK12467 3575 MPLGPNGKVDRKALPDPDAKGSREYVAPRSEVEQQLAAIWADVLGVE----QVGVTDNFFELGGDSLLALQVLSRIRQSL 3650 (3956)
T ss_pred CCCCCCCccchhhcCCCCccccccccCCCCHHHHHHHHHHHHHhCCC----CCCCCcchhcccchHHHHHHHHHHHHHHh
Confidence 799999999999984322111 0011 1233333333322 2333333322 9999999999999999
Q ss_pred CCCCccccccCCCCchhhh
Q psy6053 71 NMNVPYETFYKPPVLSEEY 89 (614)
Q Consensus 71 ~~~~~~~~~~~~~tl~~~~ 89 (614)
|+++++.++|++||+++-.
T Consensus 3651 g~~l~~~~lf~~pti~~la 3669 (3956)
T PRK12467 3651 GLKLSLRDLMSAPTIAELA 3669 (3956)
T ss_pred CCCCCHHHHHhCCCHHHHH
Confidence 9999999999999998643
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=85.73 E-value=2.1 Score=43.94 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=31.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++|+|.|| |-.|+.++..|.+.| +++|++..|+.
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G--~~~i~I~nRt~ 159 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLG--VTDITVINRNP 159 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcC--CCeEEEEeCCH
Confidence 46789999985 889999999999987 44799999974
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >KOG4022|consensus | Back alignment and domain information |
|---|
Probab=85.60 E-value=31 Score=32.11 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=25.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEE
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKI 132 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V 132 (614)
.+|+|-||-|-+|+.+++.+-.+++-|..|
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~si 33 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSI 33 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEE
Confidence 579999999999999999999987764333
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=85.44 E-value=2.2 Score=43.94 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=30.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
..|++|+|.|+ |-+|+.+++.|...|.+ |++..|..
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~~---V~v~~R~~ 184 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGAR---VFVGARSS 184 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 56899999996 88999999999988754 88888864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=85.31 E-value=1.5 Score=46.51 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=28.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
.-+|+.|||.||+|-+|...++-....+ .. .+..++++.+
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~-~v~t~~s~e~ 194 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG--AI-KVVTACSKEK 194 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC--Cc-EEEEEcccch
Confidence 3468899999999999999997666664 22 4444554433
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.12 E-value=1.6 Score=46.71 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=29.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.++|.|.||+|.+|..++..|.+.|++ |++..|.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~---V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQ---VRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCe---EEEeCCC
Confidence 478999999999999999999999977 7776663
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.3 Score=47.06 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=27.2
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~ 139 (614)
++|-|.||||++|..|++.|++. ...+.+++.+..+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~ 39 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ 39 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh
Confidence 57999999999999999977765 23344566655543
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.68 E-value=2.5 Score=43.28 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=27.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
++||+|.|.|.+|.+|+-+...|++.|..
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~gat 184 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNAT 184 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCCE
Confidence 47999999999999999999999999876
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.58 E-value=2 Score=43.94 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=26.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
.+||+|.|.|.++.+|+-|..-|++.|..
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~at 184 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGAT 184 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE
Confidence 47999999999999999999999988654
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=84.54 E-value=12 Score=38.68 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=62.9
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE-eCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI-SGDAEADE 183 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v-~gDl~~~~ 183 (614)
|-|.|| |.+|..++..|...|.. +|++.++.+....... .++.+ ... . ......+. .+
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~--eV~L~Di~e~~~~g~~--~dl~~-----~~~---~--~~~~~~I~~t~------ 59 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG--DVVLLDIVEGLPQGKA--LDISQ-----AAP---I--LGSDTKVTGTN------ 59 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc--EEEEEeCCCcHHHHHH--HHHHH-----hhh---h--cCCCeEEEEcC------
Confidence 468897 99999999988877652 5888888753221111 11111 000 0 11111221 12
Q ss_pred CCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceE
Q psy6053 184 LAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELF 241 (614)
Q Consensus 184 lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~ 241 (614)
+++. ++++|+||-+++... .+....+....|+.-.+.+++...+. ..+..
T Consensus 60 ------d~~~-l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~-~p~~~ 110 (300)
T cd01339 60 ------DYED-IAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY-APNAI 110 (300)
T ss_pred ------CHHH-hCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeE
Confidence 2333 589999999998643 23334456677888888888877774 33444
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=84.28 E-value=10 Score=32.88 Aligned_cols=101 Identities=23% Similarity=0.332 Sum_probs=58.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
.+|.|.|+ |.+|+..+..+.+.++++ +|.++..... ...+++.+.+ ++. ...
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~-~v~~v~d~~~--~~~~~~~~~~------------------~~~-~~~----- 52 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDF-EVVAVCDPDP--ERAEAFAEKY------------------GIP-VYT----- 52 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTE-EEEEEECSSH--HHHHHHHHHT------------------TSE-EES-----
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCc-EEEEEEeCCH--HHHHHHHHHh------------------ccc-chh-----
Confidence 36889996 888999999999987775 4554444321 1112222211 112 111
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhHHHHHHH------------HHhHHHHHHHHHHHHHcCCCc
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDEALKKAV------------LLNTRGTKMMLSLAKEMKHLE 239 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~~~~~~------------~~Nv~gt~~ll~la~~~~~~k 239 (614)
+++++++ ++|+|+=+...-...+....+. ..|....++++++|++. ++.
T Consensus 53 -------~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~-~~~ 115 (120)
T PF01408_consen 53 -------DLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK-GVK 115 (120)
T ss_dssp -------SHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH-TSC
T ss_pred -------HHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh-CCE
Confidence 2455554 6888887665543333322222 23777788899999884 544
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=2 Score=44.21 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=29.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL 135 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L 135 (614)
++||+|.|.|.+|.+|+.++..|++.|.. |++.
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~t---Vtv~ 188 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANAT---VTIA 188 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCE---EEEE
Confidence 57999999999999999999999999876 5544
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=1.1 Score=63.82 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=54.5
Q ss_pred cCCCCCCCCCceeeeeeccc--cc----ccc----hHHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHhh
Q psy6053 3 VPQAAPCTVGRYVTYHLSYL--CD----FAI----MFADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANKV 69 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~~ 69 (614)
+|..+||||||+++-..... .+ +.. .+.++-.+.+.+ ..++..-.|+. +|+++++|+..+++.
T Consensus 2485 lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~----~~i~~~d~Ff~lGgdSl~a~~l~~~~~~~ 2560 (5163)
T PRK12316 2485 LPLNPNGKLDRKALPKPDVSQLRQAYVAPQEGLEQRLAAIWQAVLKV----EQVGLDDHFFELGGHSLLATQVVSRVRQD 2560 (5163)
T ss_pred cCCCCCCccCHhhcCCCccccccccccCCCCHHHHHHHHHHHHHhCC----CccCCCCchhhhcchHHHHHHHHHHHHHH
Confidence 79999999999988332211 00 111 123333333322 23333333322 999999999999999
Q ss_pred cCCCCccccccCCCCchh
Q psy6053 70 NNMNVPYETFYKPPVLSE 87 (614)
Q Consensus 70 ~~~~~~~~~~~~~~tl~~ 87 (614)
+|++++..++|++||+++
T Consensus 2561 ~g~~l~~~~~f~~~ti~~ 2578 (5163)
T PRK12316 2561 LGLEVPLRILFERPTLAA 2578 (5163)
T ss_pred hCCCcCHHHHhhCccHHH
Confidence 999999999999999975
|
|
| >PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=20 Score=42.65 Aligned_cols=76 Identities=9% Similarity=0.172 Sum_probs=47.5
Q ss_pred HHHHHhcCceeeEeeCCCccccceeHHHHHHHHHH-HHHhhhhcCC----CCccEEEeccCCcccccHHHHHHHHhhhcc
Q psy6053 347 LLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFV-AIWAYLSQKE----HRQSIVHLTSSQEWQVSWQEIIDIGKSIVT 421 (614)
Q Consensus 347 ~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~-~~~~~~~~~~----~~~~vyni~~~~~~~it~~e~~~~~~~~~g 421 (614)
+..+...|.++.++-.-.....++|+|...++.+. ..+.-..+.. .....--|+.|.++.+-|+-+.+.+..++|
T Consensus 236 ~~~~~a~g~~~~~p~~~~~p~~~~p~d~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vwgm~~~ylm~yy~ 315 (1108)
T PTZ00374 236 VCLGVALGTVKHLPVGFRDPATVTPLDVALNTALLAVLLLCHGGLAECVECAAEMQLCGAPGDNSLVWGMVAEYLMDYYG 315 (1108)
T ss_pred HHHHHhhhhhhcccccCCCCceeccHHHHHHHHHHHHHHHhcCChHHHhcchhhheeccCCccceeeHHHHHHHHHHHHh
Confidence 33445567676666555666778999987776443 3333221100 112233466666789999999999999877
Q ss_pred c
Q psy6053 422 T 422 (614)
Q Consensus 422 ~ 422 (614)
+
T Consensus 316 r 316 (1108)
T PTZ00374 316 R 316 (1108)
T ss_pred h
Confidence 6
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=83.76 E-value=7.2 Score=40.25 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
.|+.|-|+|+.| ||..=++.-..-|.+ |+++.++.+.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~r---V~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMR---VTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcE---EEEEeCCchh
Confidence 589999999999 998777777777766 8999998643
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=83.76 E-value=3.6 Score=41.82 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=27.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
++|.|.|++|-+|+.+++.+.+. +++.-|.+.+|+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~ 37 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHG 37 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 58999999999999999999876 5654454555443
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=83.63 E-value=5 Score=48.46 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=67.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH--------HHHHHHHHhChhhHHhhhhccccccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA--------RQRIEELFASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~--------~~Rl~~~~~~~~f~~l~~~~p~~~~~ 170 (614)
-++..+|||.|+.| ||..+++.|...| |++|.+.+-..-..+- ++.+.+-.....-+++++-+|. -
T Consensus 21 kL~~s~VLIiG~gG-LG~EiaKnL~laG--Vg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~---V 94 (1008)
T TIGR01408 21 KMAKSNVLISGMGG-LGLEIAKNLVLAG--VKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPY---V 94 (1008)
T ss_pred HHhhCcEEEECCCH-HHHHHHHHHHHcC--CCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCC---c
Confidence 34567899999755 9999999999998 5678877754311000 0001001111122344444444 4
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+|+++.++++ .+++++.|+|+-+-. ++... ..+-++|++.+...+||+.++.
T Consensus 95 ~V~~~~~~l~-----------~e~l~~fdvVV~t~~------~~~~~--------~~in~~cr~~~~~I~fI~~~~~ 146 (1008)
T TIGR01408 95 HVSSSSVPFN-----------EEFLDKFQCVVLTEM------SLPLQ--------KEINDFCHSQCPPIAFISADVR 146 (1008)
T ss_pred eEEEecccCC-----------HHHHcCCCEEEECCC------CHHHH--------HHHHHHHHHcCCCeEEEEEeec
Confidence 5666665553 236789999997632 22222 2355788885222468887775
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.44 E-value=5.5 Score=40.47 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=25.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
++|.|.| .|.+|+.+++.|.+.++++.-+.+..|.
T Consensus 2 mrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVG-CGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 5799999 6999999999998764343334444444
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=10 Score=41.60 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=26.6
Q ss_pred CcEEE----EecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 102 GKTLF----MTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VL----ITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
|..+| |+||+|-+|..+++.|...|.+ |++..++
T Consensus 34 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~---v~~~~~~ 71 (450)
T PRK08261 34 GQPLLDGPVLVGGAGRLAEALAALLAGLGYD---VVANNDG 71 (450)
T ss_pred CCCCCCCceEEccCchhHHHHHHHHhhCCCe---eeecCcc
Confidence 34555 8888999999999999998876 6665544
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=2.8 Score=42.87 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=26.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
++||+|+|.|.+..+|+-|...|++.+..
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~at 185 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGCT 185 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCe
Confidence 46999999999999999999999988655
|
|
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=83.09 E-value=4.1 Score=40.87 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=40.9
Q ss_pred hhHHhhhhccccccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 156 ~f~~l~~~~p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
.|+++++..|+ +..+.|+..+ +-..+.+.+|++++.- +...-..+..+|+++
T Consensus 78 af~kIkekRpD-----Il~ia~~~~E--------Dp~~i~~~aDi~~~~D---------------~~~~G~~i~~~Ak~m 129 (275)
T PF12683_consen 78 AFRKIKEKRPD-----ILLIAGEPHE--------DPEVISSAADIVVNPD---------------EISRGYTIVWAAKKM 129 (275)
T ss_dssp HHHHHHHH-TT-----SEEEESS--S---------HHHHHHHSSEEEE-----------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCC-----eEEEcCCCcC--------CHHHHhhccCeEeccc---------------hhhccHHHHHHHHHc
Confidence 35566666665 8888998776 4566667899999842 122235789999998
Q ss_pred CCCceEEEEeCc
Q psy6053 236 KHLELFVHISTA 247 (614)
Q Consensus 236 ~~~k~~V~vST~ 247 (614)
+.+.|||+|..
T Consensus 130 -GAktFVh~sfp 140 (275)
T PF12683_consen 130 -GAKTFVHYSFP 140 (275)
T ss_dssp -T-S-EEEEEET
T ss_pred -CCceEEEEech
Confidence 89999999965
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=83.09 E-value=1.1 Score=47.26 Aligned_cols=33 Identities=15% Similarity=0.426 Sum_probs=25.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
++|.|+||||++|++|++.|.+. +++ +|..+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~-~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYF-ELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEEE
Confidence 47999999999999999977776 544 3555543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=82.91 E-value=11 Score=38.95 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=54.1
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--------HHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--------IEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--------l~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+|||.| .|-+|..+++.|...| +.++.+++-..-..+-..| +.+-...-.-+.+++..|+ -+++.+
T Consensus 1 kVlVVG-aGGlG~eilknLal~G--vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~---v~I~~~ 74 (291)
T cd01488 1 KILVIG-AGGLGCELLKNLALSG--FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPG---VNVTPH 74 (291)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC--CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCC---CEEEEE
Confidence 489998 5669999999999997 5578877654321111111 1111111122344444555 578888
Q ss_pred eCCCCCCCCCCCHHHHHHHhccccEEEEccc
Q psy6053 176 SGDAEADELAIKESDRQLLASEVDIMIHGAA 206 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA 206 (614)
.+++.+.+ ....++.|+||.+.-
T Consensus 75 ~~~i~~~~--------~~f~~~fdvVi~alD 97 (291)
T cd01488 75 FGKIQDKD--------EEFYRQFNIIICGLD 97 (291)
T ss_pred ecccCchh--------HHHhcCCCEEEECCC
Confidence 88887521 356789999998643
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.79 E-value=2.5 Score=43.20 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=26.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
++||+|+|.|.+..+|+-+...|+++|..
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gAt 183 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAGAS 183 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCE
Confidence 46999999999999999999999998765
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=82.61 E-value=1.2 Score=51.92 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHhhcCCCCccccccCCCCchhhh
Q psy6053 55 CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEEY 89 (614)
Q Consensus 55 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~~ 89 (614)
+|+.+++|...|++.+|+++|...+|++||+..-.
T Consensus 578 dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la 612 (705)
T PRK06060 578 DSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLA 612 (705)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHH
Confidence 99999999999999999999999999999997533
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=5.9 Score=44.88 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=48.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
.+|+|.| .|-+|+.+++.|.++|++ |.++++++ +|.++. ......++.||.+++
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~~---vvvId~d~------~~~~~~----------------~~~g~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGIP---LVVIETSR------TRVDEL----------------RERGIRAVLGNAANE 471 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCCC---EEEEECCH------HHHHHH----------------HHCCCeEEEcCCCCH
Confidence 4688888 688999999999999887 66666543 334333 113578999999987
Q ss_pred CCCCCHHHHHHH-hccccEEE
Q psy6053 183 ELAIKESDRQLL-ASEVDIMI 202 (614)
Q Consensus 183 ~lGLs~~~~~~l-~~~vd~Vi 202 (614)
+ .++++ ++++|.|+
T Consensus 472 ~------~L~~a~i~~a~~vi 486 (558)
T PRK10669 472 E------IMQLAHLDCARWLL 486 (558)
T ss_pred H------HHHhcCccccCEEE
Confidence 6 45443 35778766
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=82.51 E-value=3 Score=42.49 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++++|+|+ |.+|+.++..|++.|. +|++..|..
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~---~v~v~~R~~ 150 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADC---NVIIANRTV 150 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 34789999997 8899999999999875 488888863
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.38 E-value=16 Score=38.51 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=29.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.|++.|.|+||-||..-+.-+.+. ++--+|.+|.-.+
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~-p~~f~vval~ag~ 37 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRN-PDKFEVVALAAGK 37 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhC-CCcEEEEEEecCC
Confidence 378999999999999998766665 6645688887765
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=82.08 E-value=6.3 Score=39.64 Aligned_cols=96 Identities=11% Similarity=0.186 Sum_probs=60.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||.|||+ =|+.|++.|.+.|. + +..++-+-.+.. .. | ....+.++.|-+.+.
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v--~~sv~t~~g~~~-----------------~~--~--~~~~~~v~~G~lg~~ 55 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-V--IVSVATSYGGEL-----------------LK--P--ELPGLEVRVGRLGDE 55 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-E--EEEEEhhhhHhh-----------------hc--c--ccCCceEEECCCCCH
Confidence 7899999998 48999999999975 3 333332221110 00 0 224567788877543
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
+++..+++ +++.||... .|+...+ ++++.++|+++ ++..+-
T Consensus 56 ------~~l~~~l~~~~i~~vIDAT------HPfA~~i------s~na~~a~~~~-~ipylR 98 (249)
T PF02571_consen 56 ------EGLAEFLRENGIDAVIDAT------HPFAAEI------SQNAIEACREL-GIPYLR 98 (249)
T ss_pred ------HHHHHHHHhCCCcEEEECC------CchHHHH------HHHHHHHHhhc-CcceEE
Confidence 36777774 799999863 2333322 47788999995 665443
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.07 E-value=4.2 Score=42.62 Aligned_cols=87 Identities=14% Similarity=0.220 Sum_probs=55.8
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc-CH------HHHHHHHHhChhhHHhhhhccccccCe
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK-NA------RQRIEELFASPLFNLLKSVHGQKIIDK 171 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~-~~------~~Rl~~~~~~~~f~~l~~~~p~~~~~~ 171 (614)
...||+|-|.| .|-||+.+++.|..-|-+ |.+.++-.+.. .. ..-|++++ ....
T Consensus 139 el~gkTvGIiG-~G~IG~~va~~l~afgm~---v~~~d~~~~~~~~~~~~~~~~~~Ld~lL---------------~~sD 199 (324)
T COG0111 139 ELAGKTVGIIG-LGRIGRAVAKRLKAFGMK---VIGYDPYSPRERAGVDGVVGVDSLDELL---------------AEAD 199 (324)
T ss_pred cccCCEEEEEC-CCHHHHHHHHHHHhCCCe---EEEECCCCchhhhccccceecccHHHHH---------------hhCC
Confidence 35699999999 899999999999888765 88888832221 11 11233332 2245
Q ss_pred EEEEeCCCCCCCCCCC-HHHHHHHhccccEEEEcc
Q psy6053 172 VLPISGDAEADELAIK-ESDRQLLASEVDIMIHGA 205 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs-~~~~~~l~~~vd~ViH~A 205 (614)
+..+..-+++.--||= .+.+..+-+++ ++||+|
T Consensus 200 iv~lh~PlT~eT~g~i~~~~~a~MK~ga-ilIN~a 233 (324)
T COG0111 200 ILTLHLPLTPETRGLINAEELAKMKPGA-ILINAA 233 (324)
T ss_pred EEEEcCCCCcchhcccCHHHHhhCCCCe-EEEECC
Confidence 6667777777666653 34444443455 888876
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=81.97 E-value=2.6 Score=44.11 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=29.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-.|.+|+|+||+|-+|..+++-+...|.+ |++.+++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~---Vi~~~~~~ 186 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCY---VVGSAGSD 186 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCE---EEEEeCCH
Confidence 45889999999999999998877666643 77777764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.95 E-value=3.1 Score=42.55 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=26.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
+.||+|+|.|.+..+|+-|...|++++..
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~at 190 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNAT 190 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCE
Confidence 47999999999999999999999988654
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.75 E-value=6.6 Score=38.15 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=29.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
.+|++|+|.|| |-+|...++.|++.|.+ |+++.+
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~---V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGAH---IVVISP 41 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCe---EEEEcC
Confidence 57899999996 99999999999999866 666654
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=81.56 E-value=4.3 Score=45.35 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=31.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+.+++|+|.|+ |-+|..+++.|...|. .+|++..|+.
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~--~~V~V~nRs~ 300 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGC--TKMVVVNRSE 300 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCC--CeEEEEeCCH
Confidence 56799999997 9999999999998874 4689988874
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.44 E-value=2.9 Score=42.71 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=26.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
++||+|.|.|.+..+|+-|..-|++++..
T Consensus 157 l~Gk~vvViGrS~iVGkPla~lL~~~~at 185 (284)
T PRK14177 157 VTGKNAVVVGRSPILGKPMAMLLTEMNAT 185 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCE
Confidence 47999999999999999999999988644
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=0.82 Score=64.97 Aligned_cols=83 Identities=11% Similarity=0.106 Sum_probs=55.4
Q ss_pred cCCCCCCCCCceeeeeeccccc------ccc----hHHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHhh
Q psy6053 3 VPQAAPCTVGRYVTYHLSYLCD------FAI----MFADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANKV 69 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~~ 69 (614)
+|..+||||||+++....-... +.. .+..+-.+.+.+ .++...-+|+. +|+.+++|+..+++.
T Consensus 5041 lP~t~~GKvdR~~L~~~~~~~~~~~~~~~~~~~e~~l~~i~~~vL~~----~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~ 5116 (5163)
T PRK12316 5041 MPLTPNGKLDRKALPQPDASLLQQAYVAPRSELEQQVAAIWAEVLQL----ERVGLDDNFFELGGHSLLAIQVTSRIQLE 5116 (5163)
T ss_pred CCCCCCcccChhhcCCccccccccccCCCCcHHHHHHHHHHHHHhCC----CCCCCCCChhhccchHHHHHHHHHHHHHH
Confidence 6999999999999843211100 000 122222222222 23444444433 999999999999999
Q ss_pred cCCCCccccccCCCCchhhh
Q psy6053 70 NNMNVPYETFYKPPVLSEEY 89 (614)
Q Consensus 70 ~~~~~~~~~~~~~~tl~~~~ 89 (614)
+|++++..++|++||+++-.
T Consensus 5117 ~g~~l~~~~lf~~pti~~la 5136 (5163)
T PRK12316 5117 LGLELPLRELFQTPTLAAFV 5136 (5163)
T ss_pred cCCCCCHHHHHcCCCHHHHH
Confidence 99999999999999998644
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=81.28 E-value=16 Score=37.82 Aligned_cols=113 Identities=13% Similarity=0.171 Sum_probs=69.4
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-HHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
|.|.|+ |.+|..++..|+..|- +.+++++++.+..... ...|++.. + ...+..+..++
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~-~~el~l~D~~~~~~~g~~~DL~~~~------------~--~~~~~~i~~~~----- 59 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGL-ASELVLVDVNEEKAKGDALDLSHAS------------A--FLATGTIVRGG----- 59 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCccHHHHHHHhHHHhc------------c--ccCCCeEEECC-----
Confidence 357785 8899999999988753 3468888886532211 11122110 0 10122222211
Q ss_pred CCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 184 LAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 184 lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+++ .++++|+||-+|+... -..+..+....|+.-.+.+.+..++. ..+.++.+=|
T Consensus 60 ------~~~-~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~s 115 (300)
T cd00300 60 ------DYA-DAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVS 115 (300)
T ss_pred ------CHH-HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcc
Confidence 233 4679999999999754 23455677888999999999998885 4555554444
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.93 E-value=3.1 Score=42.58 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=26.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
++||+|.|.|.|+.+|+-|...|++++..
T Consensus 153 l~Gk~vvViGrS~iVGkPla~lL~~~~aT 181 (287)
T PRK14173 153 LAGKEVVVVGRSNIVGKPLAALLLREDAT 181 (287)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE
Confidence 47999999999999999999999988644
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=3.4 Score=42.17 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=26.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
++||+|.|.|.+..+|+-|..-|++++..
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~AT 184 (282)
T PRK14180 156 TEGAYAVVVGASNVVGKPVSQLLLNAKAT 184 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCE
Confidence 56999999999999999999999988654
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.68 E-value=14 Score=37.24 Aligned_cols=95 Identities=7% Similarity=0.080 Sum_probs=62.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|||.|||+ =|+.|++.|.+.|.. |++-+-...+. . ....+.+..|-+.+
T Consensus 2 ~~~IlvlgGT~-egr~la~~L~~~g~~---v~~Svat~~g~-~-----------------------~~~~~~v~~G~l~~ 53 (248)
T PRK08057 2 MPRILLLGGTS-EARALARALAAAGVD---IVLSLAGRTGG-P-----------------------ADLPGPVRVGGFGG 53 (248)
T ss_pred CceEEEEechH-HHHHHHHHHHhCCCe---EEEEEccCCCC-c-----------------------ccCCceEEECCCCC
Confidence 46899999999 599999999988765 44333332221 0 22356777787744
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
. +.+..+++ +++.||... .|+... -++++.++|++. ++..+-|
T Consensus 54 ~------~~l~~~l~~~~i~~VIDAT------HPfA~~------is~~a~~ac~~~-~ipyiR~ 98 (248)
T PRK08057 54 A------EGLAAYLREEGIDLVIDAT------HPYAAQ------ISANAAAACRAL-GIPYLRL 98 (248)
T ss_pred H------HHHHHHHHHCCCCEEEECC------CccHHH------HHHHHHHHHHHh-CCcEEEE
Confidence 3 36777775 799999863 233222 246788999995 7654444
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.68 E-value=3.2 Score=42.31 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=26.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
++||+|.|.|.+..+|+-|..-|++++..
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~At 184 (278)
T PRK14172 156 IEGKEVVVIGRSNIVGKPVAQLLLNENAT 184 (278)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCE
Confidence 47999999999999999999999988644
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=80.15 E-value=2.4 Score=43.92 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=30.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
..+++|+|.|+ |-+|+.++..|.+.|.+ |++..|..
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~---V~v~~r~~ 185 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGAN---VTVGARKS 185 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 35899999995 88999999999998754 88888863
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.06 E-value=14 Score=38.22 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=68.8
Q ss_pred ecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCCCCC
Q psy6053 108 TGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIK 187 (614)
Q Consensus 108 TGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lGLs 187 (614)
.| +|.+|..++..|+..+. +.++.++++.+..... ...++.+.. +- ...++.+..+|
T Consensus 2 IG-aG~VG~~~a~~l~~~~l-~~el~L~Di~~~~~~g--~a~Dl~~~~---------~~-~~~~~~i~~~~--------- 58 (299)
T TIGR01771 2 IG-AGNVGSSTAFALLNQGI-ADEIVLIDINKDKAEG--EAMDLQHAA---------SF-LPTPKKIRSGD--------- 58 (299)
T ss_pred CC-cCHHHHHHHHHHHhcCC-CCEEEEEeCCCChhhH--HHHHHHHhh---------cc-cCCCeEEecCC---------
Confidence 45 59999999999987753 3578888886533221 111221110 00 11233333222
Q ss_pred HHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 188 ESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 188 ~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
++ .++++|+||-+|+..+- ..+..+.+..|+.-.+++.+..++. +.+.++.+=|
T Consensus 59 ---~~-~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 113 (299)
T TIGR01771 59 ---YS-DCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVAT 113 (299)
T ss_pred ---HH-HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence 33 45789999999997542 3455678899999999999988885 5555444433
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 614 | ||||
| 4dqv_A | 478 | Crystal Structure Of Reductase (R) Domain Of Non-Ri | 2e-09 | ||
| 4f6c_A | 427 | Crystal Structure Of Aureusimine Biosynthetic Clust | 2e-04 | ||
| 4f6l_B | 508 | Crystal Structure Of Aureusimine Biosynthetic Clust | 2e-04 |
| >pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal Peptide Synthetase From Mycobacterium Tuberculosis Length = 478 | Back alignment and structure |
|
| >pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster Reductase Domain Length = 427 | Back alignment and structure |
|
| >pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster Reductase Domain Length = 508 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 614 | |||
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 8e-55 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 1e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 6e-04 |
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 8e-55
Identities = 68/347 (19%), Positives = 132/347 (38%), Gaps = 37/347 (10%)
Query: 80 YKPPVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139
+ NLP E +T+ +TGA+GFLG+ L+ ++LR+ ++ L+R +
Sbjct: 54 FIDADTLATAVNLPGPSPE---LRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE 110
Query: 140 KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVD 199
++AR+R+E+ F S LL+ + D++ ++GD +L + + + LA VD
Sbjct: 111 SDEDARRRLEKTFDSGDPELLRHFK-ELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVD 169
Query: 200 IMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLY 257
+++ AA + L N GT ++ +A K L+ F ++STA +
Sbjct: 170 LIVDSAAMVNAFPYHELFGP---NVAGTAELIRIALTTK-LKPFTYVSTADVGAA---IE 222
Query: 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGM 316
+ D + + G + Y +K E L+ EA + +
Sbjct: 223 PSAFTEDADIRVISP-------------TRTVDGGWAGGYGTSKWAGEVLLREANDLCAL 269
Query: 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGA--------GKGVIRTMFCDNTGYAD 368
P + R +I+ G + + T +++ + + D
Sbjct: 270 PVAVFRCGMIL--ADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFD 327
Query: 369 FLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415
LPV I V + H+ + + + E +D
Sbjct: 328 GLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDW 374
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 34/278 (12%), Positives = 73/278 (26%), Gaps = 66/278 (23%)
Query: 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHG 165
+ GA+G LG I ++ ++ R + R+ L
Sbjct: 17 AVLGATGLLGHHAARAIRAAGHDLV---LIHR--PSSQIQ-RLAYL-------------- 56
Query: 166 QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVL-LNTRG 224
+ + + + L +D +I A + +
Sbjct: 57 -----EPECRVAE-----MLDHAGLERALR-GLDGVIFSAGYYPSRPRRWQEEVASALGQ 105
Query: 225 TKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEK 284
T + + + + +++ +A + P P E
Sbjct: 106 TNPFYAACLQAR-VPRILYVGSA------YAMPRHPQGLPGH----------------EG 142
Query: 285 RAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNINGP 344
+ L +SY K + E NG+P ++ P +++ G D
Sbjct: 143 LFYDSLPSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVL--------GELDIGPTT 194
Query: 345 TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVA 382
++ G G + D G+ +A
Sbjct: 195 GRVITAIGNGEMTHYVAGQRNVID---AAEAGRGLLMA 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 1e-06
Identities = 62/473 (13%), Positives = 138/473 (29%), Gaps = 129/473 (27%)
Query: 164 HGQKIIDKVLP-ISGDAEADELAIKESDRQLLASEV--DIMIHGAATIRFDEALKKAVLL 220
+ I+ + + + +++ + +L+ E I++ A L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---WTL 71
Query: 221 NTRGTKMMLSLAKEMKHLELFVH--ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMS 278
++ +M ++ FV + Y L + E P IE+ + +
Sbjct: 72 LSKQEEM----------VQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLY 120
Query: 279 EDTVEKRAKEFLGEFPNSYAYTKCLSE-----GLVVEAMNNGMP-----CL---MLRPSI 325
D + AK + + L E ++++ G+ + +
Sbjct: 121 ND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----GVLGSGKTWVALDVCLSYK 175
Query: 326 IIPVWREPLPG---WTD--NINGPTGLLIGAGK--GVIRTMFCDNTGYADFLPVDITING 378
+ + W + N N P +L K I + + ++ + + I +
Sbjct: 176 VQCK----MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HS 229
Query: 379 IFVAIWAYLSQKEHRQS-IV--HLTSSQEWQV-----------SWQEIIDIGKSIVTTEV 424
I + L K + +V ++ +++ W ++++ D + TT +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 425 PLNGCVW--YPGGS---------MKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLV 473
L+ P + L ++ P +II S
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT----NP--RRLSIIAES------- 336
Query: 474 KIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERIEYKIDG-EDLDIKKYFQDC 532
I+D + W+ + HV IE ++ E + +K F
Sbjct: 337 -IRDGLA------------TWDN---WKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 533 IMATRIFILKE----MPETLPAARRHMRIMYWVDVIAKTLFFVFILYTLSSYS 581
+ L + W DVI + ++ L YS
Sbjct: 379 ------SVFPPSAHIPTILLS--------LIWFDVIKSDVM--VVVNKLHKYS 415
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 39/243 (16%), Positives = 68/243 (27%), Gaps = 67/243 (27%)
Query: 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLL 160
K L +TGA+G LG+V+ E++ + + L A E
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEIL----RLADLSPLDPAGPNEE--C-------- 47
Query: 161 KSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLL 220
+ D AD A+ + + D ++H I ++ ++ +
Sbjct: 48 --------------VQCDL-ADANAVNA-----MVAGCDGIVHLGG-ISVEKPFEQILQG 86
Query: 221 NTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSED 280
N G + A+ V S+ H + P D
Sbjct: 87 NIIGLYNLYEAARAHG-QPRIVFASSN--H----TIGYYPQTERLG------------PD 127
Query: 281 TVEKRAKEFLGEFPNS-YAYTKCLSEGLV-VEAMNNGMPCLMLRPSIIIPVWREP--LPG 336
+ P+ Y +KC E L + G ++R P L
Sbjct: 128 VPAR---------PDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLST 178
Query: 337 WTD 339
W
Sbjct: 179 WFS 181
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 614 | |||
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.98 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.98 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.98 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.98 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.98 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.98 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.97 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.97 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.97 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.97 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.97 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.97 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.97 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.97 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.97 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.97 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.97 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.97 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.97 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.97 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.97 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.97 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.97 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.97 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.97 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.96 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.96 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.96 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.96 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.96 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.96 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.96 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.96 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.96 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.96 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.96 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.96 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.96 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.95 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.95 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.95 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.94 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.94 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.94 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.94 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.94 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.94 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.94 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.92 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.92 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.92 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.91 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.91 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.91 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.91 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.91 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.9 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.9 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.89 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.89 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.89 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.86 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.85 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.85 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.84 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.83 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.82 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.82 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.82 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.81 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.81 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.81 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.8 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.8 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.8 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.8 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.79 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.79 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.79 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.79 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.79 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.79 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.79 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.79 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.78 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.78 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.78 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.78 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.78 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.77 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.77 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.77 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.77 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.77 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.77 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.77 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.77 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.77 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.77 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.77 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.77 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.77 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.77 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.77 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.77 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.76 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.76 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.76 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.76 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.76 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.76 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.76 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.76 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.76 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.76 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.76 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.76 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.75 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.75 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.75 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.75 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.75 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.75 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.75 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.75 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.75 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.75 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.75 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.75 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.75 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.74 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.74 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.74 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.74 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.74 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.74 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.74 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.74 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.74 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.74 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.74 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.74 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.74 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.73 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.73 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.73 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.73 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.73 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.73 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.73 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.73 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.73 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.73 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.73 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.73 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.73 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.73 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.73 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.73 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.73 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.73 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.72 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.72 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.72 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.72 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.72 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.72 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.72 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.72 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.72 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.72 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.72 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.72 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.72 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.72 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.72 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.72 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.72 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.72 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.72 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.72 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.72 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.72 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.72 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.71 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.71 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.71 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.71 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.71 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.71 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.71 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.71 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.71 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.71 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.71 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.71 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.71 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.71 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.71 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.71 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.71 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.71 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.71 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.7 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.7 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.7 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.7 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.7 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.7 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.7 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.7 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.7 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.7 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.7 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.69 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.69 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.69 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.69 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.69 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.69 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.69 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.69 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.69 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.68 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.68 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.68 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.68 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.68 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.68 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.68 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.67 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.67 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.67 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.67 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.67 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.66 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.66 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.66 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.65 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.65 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.65 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.65 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.64 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.64 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.64 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.63 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.63 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.63 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.62 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.61 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.61 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.61 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.61 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.6 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.59 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.59 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.59 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.58 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.56 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.56 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.56 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.54 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.53 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.52 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.52 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.5 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.5 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.48 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.48 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.47 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.46 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.45 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.38 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.37 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.37 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.23 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.19 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.18 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.18 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.1 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.1 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.09 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 98.93 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.9 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.89 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.81 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.8 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.59 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.59 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.54 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.53 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.37 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.26 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.14 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.05 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.87 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.82 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.76 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.68 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 97.61 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.6 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.58 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.58 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.45 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.43 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.31 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.18 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.17 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.1 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.0 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.84 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.4 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.16 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.07 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.0 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.96 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 95.8 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.64 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.6 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 95.59 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.51 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.38 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 95.27 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.22 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.18 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.08 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.07 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.06 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 95.01 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.94 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.9 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 94.84 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 94.62 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.38 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 94.36 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.24 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.15 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.13 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.05 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.99 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.96 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 93.96 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 93.92 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 93.88 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 93.86 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.84 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.83 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 93.68 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.57 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 93.55 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.43 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.35 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 93.25 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.22 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 93.2 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 93.17 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 93.12 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 92.99 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 92.95 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 92.93 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.9 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 92.9 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.88 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 92.83 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 92.67 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 92.6 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.5 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 92.49 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 92.43 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 92.22 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.21 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 92.12 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 92.08 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 92.07 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 92.07 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.99 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 91.95 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 91.65 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 91.56 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 91.48 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 91.47 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 91.45 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 91.39 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 91.25 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 91.18 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 91.14 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 91.05 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 91.04 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 91.0 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 90.96 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.84 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.84 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.82 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 90.78 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 90.67 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.37 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 90.31 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 89.72 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 89.72 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 89.68 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 89.57 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.57 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 89.45 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 89.44 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 89.32 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 89.17 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 88.76 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 88.65 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 88.6 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 88.52 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 88.48 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 88.25 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 87.99 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 87.75 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 87.59 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 87.48 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 87.42 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 87.35 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 87.07 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 86.99 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 86.98 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 86.96 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 86.91 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 86.83 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 86.79 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 86.76 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 86.65 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 86.55 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 86.4 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 86.04 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 85.95 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 85.77 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 85.7 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 85.13 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 84.84 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 84.75 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 84.69 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 84.58 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 84.45 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 84.42 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 84.19 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 83.93 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 83.68 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 83.49 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 83.36 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 83.34 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 83.34 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 83.24 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 83.13 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 82.96 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 82.9 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 82.58 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 82.57 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 82.12 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 82.09 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 81.93 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 81.71 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 81.57 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 81.55 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 81.26 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 81.18 | |
| 2nvu_B | 805 | Maltose binding protein/NEDD8-activating enzyme E1 | 81.16 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 80.81 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 80.62 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 80.53 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 80.41 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 80.36 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 80.26 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 80.05 |
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=340.88 Aligned_cols=381 Identities=17% Similarity=0.147 Sum_probs=231.0
Q ss_pred hhhHHHHHHHHHHhhcCCCCccccccCCCCchhhhh----------cCCcc-------------------cccccCCcEE
Q psy6053 55 CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEEYR----------NLPDR-------------------IGETFTGKTL 105 (614)
Q Consensus 55 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~~~----------~~~~~-------------------i~~~~~~~~V 105 (614)
+|+.+++|+..+++ +|+++++.++|++||++.-.. ..+.. ....-.+|+|
T Consensus 75 ~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 153 (508)
T 4f6l_B 75 NSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQNQQSLVALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNT 153 (508)
T ss_dssp ---------------------------------------------CCCCSTHHHHHHHHHHHHTTCCCSTTSCBCCCEEE
T ss_pred hHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHhhccccccchhhhHHHHHHhhhcccccccccccccCCCCeE
Confidence 89999999999986 899999999999999873110 01110 0111235899
Q ss_pred EEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC-CCC
Q psy6053 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA-DEL 184 (614)
Q Consensus 106 LITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~-~~l 184 (614)
||||||||||++|+++|++.|++ |+|++|+.......+|+.+.++...-..... . ...+++++.||+++ +.+
T Consensus 154 LVTGatG~iG~~l~~~L~~~g~~---V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~---~-~~~~v~~v~~Dl~d~~~l 226 (508)
T 4f6l_B 154 LLTGATGFLGAYLIEALQGYSHR---IYCFIRADNEEIAWYKLMTNLNDYFSEETVE---M-MLSNIEVIVGDFECMDDV 226 (508)
T ss_dssp EESCTTSHHHHHHHHHTBTTEEE---EEEEEESSSHHHHHHHHHHHHHHHSCHHHHH---H-HSTTEEEEEEBTTBCSSC
T ss_pred EEECCccchHHHHHHHHHhcCCE---EEEEECCCChHHHHHHHHHHHHHhcccccch---h-ccCceEEEecCCcccccC
Confidence 99999999999999999887654 9999999876666777766554321111111 1 34689999999999 555
Q ss_pred CCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC-------cccc
Q psy6053 185 AIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE-------KVLY 257 (614)
Q Consensus 185 GLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~-------~~i~ 257 (614)
+ +..++|+|||+||.+++..++....++|+.||.+++++|++ +.++|||+||.++ +.. .+++
T Consensus 227 ~--------~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iSS~~v-G~~~~~~~~~~~~~ 295 (508)
T 4f6l_B 227 V--------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVTFS 295 (508)
T ss_dssp C--------CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT--TTCEEEEEEESCT-TSEECTTCSCCEEC
T ss_pred C--------CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeCChhh-ccCCccCCcCcccc
Confidence 4 66799999999999988888888999999999999999998 6689999999988 331 2344
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGW 337 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw 337 (614)
|+....+ ....++|+.||+.+|+++.++.+.|++++|+|||.|+|+...+. +
T Consensus 296 E~~~~~~--------------------------~~~~~~Y~~sK~~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~--~ 347 (508)
T 4f6l_B 296 EADVYKG--------------------------QLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRW--H 347 (508)
T ss_dssp TTCSCSS--------------------------BCCCSHHHHHHHHHHHHHHHHHHTTCEEEEEEECCEESCSSSCC--C
T ss_pred ccccccc--------------------------ccCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCc--c
Confidence 4422111 11348999999999999999876799999999999999976531 1
Q ss_pred cCCC--CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 338 TDNI--NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 338 ~d~~--~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
..+. .....++.....+.... .++++..++++||||+|++++.++..+. .+++||++++ ++++|.|+++.
T Consensus 348 ~~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~~~~v~v~DvA~ai~~~~~~~~-----~~~~~nl~~~--~~~s~~el~~~ 419 (508)
T 4f6l_B 348 MRNIKTNRFSMVMNDLLQLDCIG-VSMAEMPVDFSFVDTTARQIVALAQVNT-----PQIIYHVLSP--NKMPVKSLLEC 419 (508)
T ss_dssp CTTCTTCHHHHHHHHHTTCSEEE-TTGGGSEEECEEHHHHHHHHHHHTTBCC-----SCSEEEESCS--CEEEHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHcCCCC-CCccCceEEEEcHHHHHHHHHHHHhCCC-----CCCEEEeCCC--CCCCHHHHHHH
Confidence 1121 11234555555443222 1346889999999999999999986543 6789999999 89999999999
Q ss_pred HhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcceEE
Q psy6053 416 GKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWE 495 (614)
Q Consensus 416 ~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~~w~ 495 (614)
+.+. + .+. .| .+.+..... ..|..|.+ .+.. .-.....+.
T Consensus 420 i~~~-~--~~~-----~~--------------------~~~w~~~l~--~~~~~~~~-~~~~---------~~~~~~~~~ 459 (508)
T 4f6l_B 420 VKRK-E--IEL-----VS--------------------DESFNEILQ--KQDMYETI-GLTS---------VDREQQLAM 459 (508)
T ss_dssp HHSS-C--CEE-----EC--------------------HHHHHHHHH--TTCCHHHH-HHHH---------TGGGSEECE
T ss_pred HHHc-C--Ccc-----cC--------------------HHHHHHHHH--hcCCccch-hccc---------ccccCccee
Confidence 9987 4 111 11 222221111 11333322 1110 112234678
Q ss_pred EechhHHHHHHHcChhccccccCcCCCCCHHHHHHHHHHHHHHH
Q psy6053 496 FRNEYVHVLRKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIF 539 (614)
Q Consensus 496 f~~~n~~~l~~~l~~~D~~~f~~d~~~~dw~~Y~~~~~~G~r~y 539 (614)
|++.++.+.+..+. |....++ ++|++.++.-++.+
T Consensus 460 ~d~~~~~~~l~~~G--------~~~~~~~-~~~l~~~~~~~~~~ 494 (508)
T 4f6l_B 460 IDTTLTLKIMNHIS--------EKWPTIT-NNWLYHWAQYIKTI 494 (508)
T ss_dssp ECCHHHHHHHHHHS--------CCCCCCC-HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcC--------CCCCCCC-HHHHHHHHHHHHHH
Confidence 99999998888763 3445555 67777777766666
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=307.07 Aligned_cols=315 Identities=19% Similarity=0.155 Sum_probs=229.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|||||||||||++|+++|+++|++ |++++|...... +.+.++... .+.....+++++.||+
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~Dl 88 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQV---VIGLDNFSTGHQ--YNLDEVKTL---------VSTEQWSRFCFIEGDI 88 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCH--HHHHHHHHT---------SCHHHHTTEEEEECCT
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCCCCch--hhhhhhhhc---------cccccCCceEEEEccC
Confidence 46799999999999999999999999876 999999865432 222222110 0000115799999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
++++ ++..+++++|+|||+||...... .....+++|+.||.+++++|++. ++++|||+||.++++...
T Consensus 89 ~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~~ 161 (351)
T 3ruf_A 89 RDLT------TCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQSFTYAASSSTYGDHPAL 161 (351)
T ss_dssp TCHH------HHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCS
T ss_pred CCHH------HHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEecHHhcCCCCCC
Confidence 9865 89999999999999999866543 34567899999999999999995 899999999998876543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+++|+....| .+.|+.||+.+|++++.+.. .|++++|+||+.|||+...+
T Consensus 162 ~~~E~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~ 212 (351)
T 3ruf_A 162 PKVEENIGNP-----------------------------LSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDP 212 (351)
T ss_dssp SBCTTCCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCC
T ss_pred CCccCCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCC
Confidence 5666644333 27899999999999998876 59999999999999998754
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
...+. .....++..+..|....++++++..+++++|||+|++++.++..... ..+++||++++ +++|+.|++
T Consensus 213 ~~~~~---~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~---~~~~~~ni~~~--~~~s~~e~~ 284 (351)
T 3ruf_A 213 NGAYA---AVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDS---AKDNIYNVAVG--DRTTLNELS 284 (351)
T ss_dssp CSTTC---CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGG---GCSEEEEESCS--CCEEHHHHH
T ss_pred Ccchh---hHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhccc---cCCCEEEeCCC--CcccHHHHH
Confidence 32111 11234566677777777788999999999999999999998876211 26889999999 899999999
Q ss_pred HHHhhhcccccCCCC--ccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhh
Q psy6053 414 DIGKSIVTTEVPLNG--CVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYY 489 (614)
Q Consensus 414 ~~~~~~~g~~~p~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f 489 (614)
+.+.+.+|.+.+... ..+.+......... ..-.+.+.+.+||+|+. .+.+.+.+ .++||
T Consensus 285 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~-~~~~~l~~---~~~~~ 345 (351)
T 3ruf_A 285 GYIYDELNLIHHIDKLSIKYREFRSGDVRHS-------------QADVTKAIDLLKYRPNI-KIREGLRL---SMPWY 345 (351)
T ss_dssp HHHHHHHHTTCCC-----EEECCCTTCCSBC-------------CBCCHHHHHHHCCCCCC-CHHHHHHH---HHHHH
T ss_pred HHHHHHhCcccccccccccccCCCCCcccee-------------eeCHHHHHHHhCCCCCC-CHHHHHHH---HHHHH
Confidence 999999887322111 11111100000000 01123456678999987 67777776 44454
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=303.24 Aligned_cols=305 Identities=15% Similarity=0.153 Sum_probs=225.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|||||||||||++|+++|++.|+++ +|+++.|....... +++++. . ...+++++.||+
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~-~v~~~~~~~~~~~~-~~l~~~------------~---~~~~~~~~~~Dl 84 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETY-KIINFDALTYSGNL-NNVKSI------------Q---DHPNYYFVKGEI 84 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTE-EEEEEECCCTTCCG-GGGTTT------------T---TCTTEEEEECCT
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCc-EEEEEeccccccch-hhhhhh------------c---cCCCeEEEEcCC
Confidence 457899999999999999999999999763 58888886533221 111100 0 225799999999
Q ss_pred CCCCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC-
Q psy6053 180 EADELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE- 253 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~- 253 (614)
++++ .+..++++ +|+|||+||..... ......+++|+.||.+++++|++. ++++|||+||.++++..
T Consensus 85 ~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vy~~~~ 157 (346)
T 4egb_A 85 QNGE------LLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHIKLVQVSTDEVYGSLG 157 (346)
T ss_dssp TCHH------HHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TTSEEEEEEEGGGGCCCC
T ss_pred CCHH------HHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeCchHHhCCCC
Confidence 9865 78888887 99999999987654 445668899999999999999995 88999999999887754
Q ss_pred --cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 254 --KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 254 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
.+++|+....|. +.|+.||+.+|+++..+.. .|++++++||+.|||+.
T Consensus 158 ~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 208 (346)
T 4egb_A 158 KTGRFTEETPLAPN-----------------------------SPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPY 208 (346)
T ss_dssp SSCCBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred cCCCcCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcC
Confidence 356666433332 7899999999999999876 69999999999999987
Q ss_pred CCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
..+. .....++..+..|....++++++..+++++|+|+|++++.++.... .+++||++++ +++++.
T Consensus 209 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~~~i~~~--~~~s~~ 274 (346)
T 4egb_A 209 QYPE-------KLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR-----VGEVYNIGGN--NEKTNV 274 (346)
T ss_dssp CCTT-------SHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC-----TTCEEEECCS--CCEEHH
T ss_pred CCcc-------chHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC-----CCCEEEECCC--CceeHH
Confidence 6431 1233466667777766677889999999999999999999987653 6789999999 889999
Q ss_pred HHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 411 EIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 411 e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
|+++.+.+.+|.+.+... +.+........+ ..-.+.+.+.+||+|.. .+.+.+.+ .++||.
T Consensus 275 e~~~~i~~~~g~~~~~~~--~~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~-~~~e~l~~---~~~~~~ 335 (346)
T 4egb_A 275 EVVEQIITLLGKTKKDIE--YVTDRLGHDRRY-------------AINAEKMKNEFDWEPKY-TFEQGLQE---TVQWYE 335 (346)
T ss_dssp HHHHHHHHHHTCCGGGCE--EECC--CCCSCC-------------CBCCHHHHHHHCCCCCC-CHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHhCCCccccc--ccCCCCCCccee-------------eccHHHHHHHcCCCCCC-CHHHHHHH---HHHHHH
Confidence 999999999898655221 111110000000 01123445678999987 67777776 555654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=298.80 Aligned_cols=311 Identities=18% Similarity=0.126 Sum_probs=226.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.+|+|||||||||||++++++|++.|++ |+++.|...... ..+++.+. ...++.++.+|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl 64 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYD---VVIADNLVNSKREAIARIEKI----------------TGKTPAFHETDV 64 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECCCSSSCTHHHHHHHHH----------------HSCCCEEECCCT
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCc---EEEEecCCcchHHHHHHHHhh----------------cCCCceEEEeec
Confidence 4689999999999999999999999876 899999765432 22222221 234788999999
Q ss_pred CCCCCCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc
Q psy6053 180 EADELAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~ 254 (614)
++++ +++.+++ ++|+|||+||...... .....+++|+.||.+++++|++ .++++|||+||..+++...
T Consensus 65 ~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~iv~~SS~~~~g~~~ 137 (341)
T 3enk_A 65 SDER------ALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRE-RAVKRIVFSSSATVYGVPE 137 (341)
T ss_dssp TCHH------HHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEEEEGGGBCSCS
T ss_pred CCHH------HHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHh-CCCCEEEEEecceEecCCC
Confidence 9865 8888887 8999999999876533 3346789999999999999999 4889999999987775433
Q ss_pred --ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-C-CCCEEEeecceeeccc
Q psy6053 255 --VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-N-GMPCLMLRPSIIIPVW 330 (614)
Q Consensus 255 --~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~-glp~~IvRp~~I~g~~ 330 (614)
+++|+....| .+.|+.||+.+|++++.+.. . +++++++||++|||+.
T Consensus 138 ~~~~~e~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~ 188 (341)
T 3enk_A 138 RSPIDETFPLSA-----------------------------TNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAH 188 (341)
T ss_dssp SSSBCTTSCCBC-----------------------------SSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred CCCCCCCCCCCC-----------------------------CChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence 5666543322 27899999999999998876 3 5999999999999997
Q ss_pred CCCCccccCCC--CchHHHHHHHhcCc--eeeEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 331 REPLPGWTDNI--NGPTGLLIGAGKGV--IRTMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 331 ~~p~~gw~d~~--~g~~~~~~~~~~g~--~~~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
..++.|...+. ......+.....|. ...+++ ++++.++++||+|+|++++.++..... ...+++||++
T Consensus 189 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~~ni~ 266 (341)
T 3enk_A 189 ESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALER--RDASLTVNLG 266 (341)
T ss_dssp TTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHH--HTSCEEEEES
T ss_pred cccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhc--CCcceEEEeC
Confidence 65444432211 22333444444443 233455 788999999999999999999887321 0267899999
Q ss_pred cCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy6053 401 SSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRIN 480 (614)
Q Consensus 401 ~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~ 480 (614)
++ +++|+.|+++.+.+.+|.+.|.......+... ... ..-.+.+.+.+||+|+. .+.+.+.
T Consensus 267 ~~--~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~---~~~-------------~~d~~k~~~~lG~~p~~-~l~~~l~ 327 (341)
T 3enk_A 267 TG--RGYSVLEVVRAFEKASGRAVPYELVARRPGDV---AEC-------------YANPAAAAETIGWKAER-DLERMCA 327 (341)
T ss_dssp CS--CCEEHHHHHHHHHHHHCSCCCEEEECCCTTCC---SEE-------------CBCCHHHHHHHCCCCCC-CHHHHHH
T ss_pred CC--CceeHHHHHHHHHHHhCCCcceeeCCCCCCCc---ccc-------------ccCHHHHHHHcCCCCCC-CHHHHHH
Confidence 98 89999999999999989876543211111110 000 00123456789999977 6778877
Q ss_pred HHHhhhhhhh
Q psy6053 481 KGFEVFEYYA 490 (614)
Q Consensus 481 ~~~~~~~~f~ 490 (614)
+ .++||.
T Consensus 328 ~---~~~~~~ 334 (341)
T 3enk_A 328 D---HWRWQE 334 (341)
T ss_dssp H---HHHHHH
T ss_pred H---HHHHHH
Confidence 7 555654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=300.49 Aligned_cols=289 Identities=17% Similarity=0.065 Sum_probs=222.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|||||||||||++|+++|+++|++ |++++|..... ...+++++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~-------------------------~~~~~~~~~~Dl~- 52 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNT---PIILTRSIGNK-------------------------AINDYEYRVSDYT- 52 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCCC------------------------------CCEEEECCCC-
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCE---EEEEeCCCCcc-------------------------cCCceEEEEcccc-
Confidence 479999999999999999999999875 99999983221 1126789999999
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--ccccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VLYEK 259 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i~E~ 259 (614)
++ ++.++++++|+|||+||..... ......++|+.||.+++++|++. ++++|||+||.++++... +++|+
T Consensus 53 ~~------~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~-~~~r~v~~SS~~vyg~~~~~~~~E~ 124 (311)
T 3m2p_A 53 LE------DLINQLNDVDAVVHLAATRGSQ-GKISEFHDNEILTQNLYDACYEN-NISNIVYASTISAYSDETSLPWNEK 124 (311)
T ss_dssp HH------HHHHHTTTCSEEEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCCGGGCSBCTT
T ss_pred HH------HHHHhhcCCCEEEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhCCCCCCCCCCC
Confidence 76 8999999999999999987655 44567899999999999999994 899999999998776543 56666
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCcccc
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~gw~ 338 (614)
..+.| .+.|+.||+.+|++++++.. .|++++|+||+.|||+...+.
T Consensus 125 ~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~---- 171 (311)
T 3m2p_A 125 ELPLP-----------------------------DLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN---- 171 (311)
T ss_dssp SCCCC-----------------------------SSHHHHHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C----
T ss_pred CCCCC-----------------------------CchhHHHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC----
Confidence 43333 27899999999999999887 799999999999999876431
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhh
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKS 418 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~ 418 (614)
.....++..+..|....++++++..+++++++|+|++++.++.+.. .+++||++++ +++|+.|+++.+.+
T Consensus 172 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~-----~~~~~~i~~~--~~~s~~e~~~~i~~ 241 (311)
T 3m2p_A 172 ---YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK-----VSGTFNIGSG--DALTNYEVANTINN 241 (311)
T ss_dssp ---CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT-----CCEEEEECCS--CEECHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC-----CCCeEEeCCC--CcccHHHHHHHHHH
Confidence 1233466667778777777889999999999999999999886543 6789999999 88999999999999
Q ss_pred hcccccCCCCccccCC-cccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 419 IVTTEVPLNGCVWYPG-GSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 419 ~~g~~~p~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
.+|.+.+... .|. ........ ..-.+.+.+.+||+|.. .+.+.+.+ .++|+.
T Consensus 242 ~~g~~~~~~~---~~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~-~~~~~l~~---~~~~~~ 294 (311)
T 3m2p_A 242 AFGNKDNLLV---KNPNANEGIHSS-------------YMDSSKAKELLDFSTDY-NFATAVEE---IHLLMR 294 (311)
T ss_dssp HTTCTTCEEE---CSSSBCCSCCCB-------------CBCCHHHHHHSCCCCSC-CHHHHHHH---HHHHHC
T ss_pred HhCCCCccee---cCCCCCCCcCce-------------ecCHHHHHHHhCCCccc-CHHHHHHH---HHHHHH
Confidence 9888654321 111 00000000 01124456779999987 67777776 455554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=302.36 Aligned_cols=327 Identities=14% Similarity=0.091 Sum_probs=228.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.+++|+|||||||||||++|+++|+++ |++ |++++|+...... +. ...+++++.|
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~---V~~~~r~~~~~~~---------------~~------~~~~v~~~~~ 76 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWE---VFGMDMQTDRLGD---------------LV------KHERMHFFEG 76 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCE---EEEEESCCTTTGG---------------GG------GSTTEEEEEC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCE---EEEEeCChhhhhh---------------hc------cCCCeEEEeC
Confidence 356789999999999999999999998 765 9999998643210 00 2257999999
Q ss_pred CCC-CCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC
Q psy6053 178 DAE-ADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE 253 (614)
Q Consensus 178 Dl~-~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~ 253 (614)
|++ +++ .+..+++++|+|||+||..... ......+++|+.||.+++++|++. + ++|||+||.++++..
T Consensus 77 Dl~~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~-~~~v~~SS~~vyg~~ 148 (372)
T 3slg_A 77 DITINKE------WVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYGMC 148 (372)
T ss_dssp CTTTCHH------HHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T-CEEEEECCGGGGBSC
T ss_pred ccCCCHH------HHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C-CcEEEeCcHHHhCCC
Confidence 999 654 7888889999999999987753 244567899999999999999996 6 899999999877654
Q ss_pred c--ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccC
Q psy6053 254 K--VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 254 ~--~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~ 331 (614)
. ++.|+..+.+.++. ....+.|+.||+.+|++++.+...|++++|+||+.|||+..
T Consensus 149 ~~~~~~e~~~~~~~~p~----------------------~~p~~~Y~~sK~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~ 206 (372)
T 3slg_A 149 ADEQFDPDASALTYGPI----------------------NKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGL 206 (372)
T ss_dssp CCSSBCTTTCCEEECCT----------------------TCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSEECSSC
T ss_pred CCCCCCccccccccCCC----------------------CCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEccccccCCCc
Confidence 3 45555332111000 01125799999999999999876689999999999999987
Q ss_pred CCCccccCCCCch-HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc-CCcccccH
Q psy6053 332 EPLPGWTDNINGP-TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS-SQEWQVSW 409 (614)
Q Consensus 332 ~p~~gw~d~~~g~-~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~-~~~~~it~ 409 (614)
.+..++.....+. ..++..+..|....++++++..+++++|+|+|++++.++..... ...+++||+++ + +++|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~~ni~~~~--~~~s~ 282 (372)
T 3slg_A 207 DSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNG--VATGKIYNIGNPN--NNFSV 282 (372)
T ss_dssp CCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGG--TTTTEEEEECCTT--CEEEH
T ss_pred ccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccC--cCCCceEEeCCCC--CCccH
Confidence 6533332222222 24556667777777778889999999999999999999987641 02678999999 5 68999
Q ss_pred HHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHH--HHHHHHHHhCCChHHHHHHHHHHHHHhhhh
Q psy6053 410 QEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAY--FLDAIIFLSGNKPCLVKIQDRINKGFEVFE 487 (614)
Q Consensus 410 ~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~--~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~ 487 (614)
.|+++.+.+.+|.+.+..................+.. ........ -.+.+.+.+||+|+. .+.+.+.+ .++
T Consensus 283 ~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~---~~~ 355 (372)
T 3slg_A 283 RELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGN---GYQDVQNRVPKIENTMQELGWAPQF-TFDDALRQ---IFE 355 (372)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHTCCEEEC----------------CCCCBCCHHHHHHHTCCCCC-CHHHHHHH---HHH
T ss_pred HHHHHHHHHHhCCCcccccccccceeeeccccccccC---CccccceeecCHHHHHHHcCCCCCC-CHHHHHHH---HHH
Confidence 9999999999887654321000000000000000000 00000001 123456789999987 67777776 555
Q ss_pred hhh
Q psy6053 488 YYA 490 (614)
Q Consensus 488 ~f~ 490 (614)
||.
T Consensus 356 ~~~ 358 (372)
T 3slg_A 356 AYR 358 (372)
T ss_dssp HHT
T ss_pred HHH
Confidence 664
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=298.63 Aligned_cols=298 Identities=15% Similarity=0.125 Sum_probs=220.4
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.+..++|+|||||||||||++|+++|++.|++ |++++|.... .++.++.
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~---V~~~~r~~~~----------------------------~~~~~~~ 62 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRT---VRGFDLRPSG----------------------------TGGEEVV 62 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTTCC---EEEEESSCCS----------------------------SCCSEEE
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCCCE---EEEEeCCCCC----------------------------CCccEEe
Confidence 34466899999999999999999999999987 8999997642 3567899
Q ss_pred CCCCCCCCCCCHHHHHHHhccccEEEEcccccChhH-HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC--
Q psy6053 177 GDAEADELAIKESDRQLLASEVDIMIHGAATIRFDE-ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE-- 253 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~-~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~-- 253 (614)
+|+++++ .+..+++++|+|||+||...... .....+++|+.||.+++++|++ .++++|||+||.++++..
T Consensus 63 ~Dl~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~-~~~~~~V~~SS~~vyg~~~~ 135 (347)
T 4id9_A 63 GSLEDGQ------ALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASA-AGVRRFVFASSGEVYPENRP 135 (347)
T ss_dssp SCTTCHH------HHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHH-TTCSEEEEEEEGGGTTTTSC
T ss_pred cCcCCHH------HHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEECCHHHhCCCCC
Confidence 9999865 88999999999999999876543 3477899999999999999999 489999999999887652
Q ss_pred --cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceee---
Q psy6053 254 --KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIII--- 327 (614)
Q Consensus 254 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~--- 327 (614)
.+++|+....| .+.|+.||+.+|++++.+.. .|++++|+||+.||
T Consensus 136 ~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~ 186 (347)
T 4id9_A 136 EFLPVTEDHPLCP-----------------------------NSPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDAT 186 (347)
T ss_dssp SSSSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGG
T ss_pred CCCCcCCCCCCCC-----------------------------CChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecc
Confidence 25666543332 27899999999999998876 79999999999999
Q ss_pred ----------cccCCCCccccC----CCCchHHHHHHHhcCceeeEeeCCCccccc----eeHHHHHHHHHHHHHhhhhc
Q psy6053 328 ----------PVWREPLPGWTD----NINGPTGLLIGAGKGVIRTMFCDNTGYADF----LPVDITINGIFVAIWAYLSQ 389 (614)
Q Consensus 328 ----------g~~~~p~~gw~d----~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~----vpVDdva~aii~~~~~~~~~ 389 (614)
|+...+.+.+.+ .......++..+..|....++++++..+++ ++|+|+|++++.++.+...
T Consensus 187 ~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~- 265 (347)
T 4id9_A 187 ELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEA- 265 (347)
T ss_dssp GTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGG-
T ss_pred cccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCccc-
Confidence 554321000000 000112345556667666678889999999 9999999999999987643
Q ss_pred CCCCccEEEeccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCC
Q psy6053 390 KEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNK 469 (614)
Q Consensus 390 ~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~ 469 (614)
.+++||++++ +++|+.|+++.+.+.+|.+.+... .|.... . ...-.+.+.+.+||+
T Consensus 266 ---~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~~~~~~---~p~~~~--~--------------~~~d~~k~~~~lG~~ 321 (347)
T 4id9_A 266 ---AGGTFNLGAD--EPADFAALLPKIAALTGLPIVTVD---FPGDGV--Y--------------YHTSNERIRNTLGFE 321 (347)
T ss_dssp ---TTEEEEESCS--SCEEHHHHHHHHHHHHCCCEEEEE---CSSCCC--B--------------CCBCCHHHHHHHCCC
T ss_pred ---CCCeEEECCC--CcccHHHHHHHHHHHhCCCCceee---CCCccc--c--------------cccCHHHHHHHhCCC
Confidence 5789999999 899999999999999898655421 222110 0 001124456679999
Q ss_pred hHHHHHHHHHHHHHhhhhhhh
Q psy6053 470 PCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 470 P~~~~l~~ki~~~~~~~~~f~ 490 (614)
|+. .+.+.+.+ .++||.
T Consensus 322 p~~-~~~~~l~~---~~~~~~ 338 (347)
T 4id9_A 322 AEW-TMDRMLEE---AATARR 338 (347)
T ss_dssp CCC-CHHHHHHH---HHHHHH
T ss_pred CCC-CHHHHHHH---HHHHHH
Confidence 986 56777776 444543
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=314.64 Aligned_cols=298 Identities=21% Similarity=0.283 Sum_probs=218.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCc-cEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNV-KKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v-~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..++|+|||||||||||++|+++|++.++ + .+|++++|++....+.+|+++.+.....+.+....+. ...+++++.|
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~-~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~v~~v~~ 147 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLD-VDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKEL-AADRLEVVAG 147 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSC-TTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHH-HTTTEEEEEC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCC-CCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhh-ccCceEEEEe
Confidence 35689999999999999999999999932 1 3599999998777677777766654322222221122 3468999999
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
|++++++|++.+.++.+++++|+|||+||.+++ .++...+++|+.||.+++++|++ .++++|||+||.++++... .
T Consensus 148 Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~-~~~~~~V~iSS~~v~~~~~~~~ 225 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALT-TKLKPFTYVSTADVGAAIEPSA 225 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTS-SSCCCEEEEEEGGGGTTSCTTT
T ss_pred ECCCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeehhhcCccCCCC
Confidence 999999999999999999999999999999887 66667889999999999999999 4889999999998766432 3
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhh--hhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAK--EFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p--~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
+.|+... ....+ .....++++|+.||+.+|++++++.. .|++++|+|||+|||+...
T Consensus 226 ~~E~~~~--------------------~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~ 285 (478)
T 4dqv_A 226 FTEDADI--------------------RVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSY 285 (478)
T ss_dssp CCSSSCH--------------------HHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSS
T ss_pred cCCcccc--------------------cccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCcc
Confidence 4443211 11111 12234568899999999999999876 6999999999999998541
Q ss_pred CCccccCCCCc-hHHHHHH-HhcCceee-EeeC------CCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 333 PLPGWTDNING-PTGLLIG-AGKGVIRT-MFCD------NTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 333 p~~gw~d~~~g-~~~~~~~-~~~g~~~~-~~~~------~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
. ..| +... ...++.. ...|..+. +++. ++..++++||||+|++++.++.+........+++||++++.
T Consensus 286 ~-g~~--~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~ 362 (478)
T 4dqv_A 286 A-GQL--NMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPH 362 (478)
T ss_dssp S-SCC--CTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCC
T ss_pred C-CcC--CHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCC
Confidence 1 001 1111 1123322 23344322 2221 26789999999999999999886321112367899999993
Q ss_pred cccccHHHHHHHHhhhccccc
Q psy6053 404 EWQVSWQEIIDIGKSIVTTEV 424 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~~ 424 (614)
.++++|.|+++.+.+. |.+.
T Consensus 363 ~~~~s~~el~~~l~~~-g~~~ 382 (478)
T 4dqv_A 363 DDGIGLDEYVDWLIEA-GYPI 382 (478)
T ss_dssp CSSCSHHHHHHHHHHT-TCSC
T ss_pred CCCcCHHHHHHHHHHc-CCCc
Confidence 3349999999999997 8754
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=288.25 Aligned_cols=304 Identities=17% Similarity=0.220 Sum_probs=219.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|+++|++ |+++.|...... + . ...+++++.+|++++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~--~-------------------~-~~~~~~~~~~D~~~~ 56 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLS---VVVVDNLQTGHE--D-------------------A-ITEGAKFYNGDLRDK 56 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCG--G-------------------G-SCTTSEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCE---EEEEeCCCcCch--h-------------------h-cCCCcEEEECCCCCH
Confidence 78999999999999999999999865 899998754321 0 0 223688999999986
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC--cc
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE--KV 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~--~~ 255 (614)
+ .+.++++ ++|+|||+||..... ......+++|+.||.+++++|++. ++++|||+||.++++.. .+
T Consensus 57 ~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~~~~~~~ 129 (330)
T 2c20_A 57 A------FLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-KVDKFIFSSTAATYGEVDVDL 129 (330)
T ss_dssp H------HHHHHHHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGGCSCSSSS
T ss_pred H------HHHHHHhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-CCCEEEEeCCceeeCCCCCCC
Confidence 5 7888888 899999999987643 345678899999999999999994 88999999999877643 25
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~ 334 (614)
++|+..+.| .+.|+.||+.+|++++.+.. .|++++++||+.|||+.....
T Consensus 130 ~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~ 180 (330)
T 2c20_A 130 ITEETMTNP-----------------------------TNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGI 180 (330)
T ss_dssp BCTTSCCCC-----------------------------SSHHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCS
T ss_pred CCcCCCCCC-----------------------------CChHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCc
Confidence 666533222 27899999999999999876 589999999999999975433
Q ss_pred ccccCC-CCchHHHHHHHhcC--ceeeEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc
Q psy6053 335 PGWTDN-INGPTGLLIGAGKG--VIRTMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW 405 (614)
Q Consensus 335 ~gw~d~-~~g~~~~~~~~~~g--~~~~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~ 405 (614)
.|..+. .......+.....+ ....+++ +++..++++||+|+|++++.++..... ...+++||++++ +
T Consensus 181 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~--~~~~~~~ni~~~--~ 256 (330)
T 2c20_A 181 IGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQN--GGESDFYNLGNG--N 256 (330)
T ss_dssp SCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHT--TCCCEEEECCCT--T
T ss_pred cccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhcccc--CCCCCeEEeCCC--C
Confidence 332211 12223333333332 2233444 678899999999999999999876542 013689999998 8
Q ss_pred cccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy6053 406 QVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEV 485 (614)
Q Consensus 406 ~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~ 485 (614)
++|+.|+++.+.+.+|.+.|... .|......... ..-.+.+.+.+||+|....+.+.+.+ .
T Consensus 257 ~~s~~e~~~~i~~~~g~~~~~~~---~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~~~l~~~l~~---~ 317 (330)
T 2c20_A 257 GFSVKEIVDAVREVTNHEIPAEV---APRRAGDPARL-------------VASSQKAKEKLGWDPRYVNVKTIIEH---A 317 (330)
T ss_dssp CBCHHHHHHHHHHHTTSCCCEEE---ECCCSSCCSEE-------------CBCCHHHHHHHCCCCSCCCHHHHHHH---H
T ss_pred CccHHHHHHHHHHHhCCCCceee---CCCCCCccccc-------------ccCHHHHHHHhCCCCccCCHHHHHHH---H
Confidence 89999999999999887655431 12110000000 00123445678999976456677766 4
Q ss_pred hhhhh
Q psy6053 486 FEYYA 490 (614)
Q Consensus 486 ~~~f~ 490 (614)
++||.
T Consensus 318 ~~~~~ 322 (330)
T 2c20_A 318 WNWHQ 322 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45554
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=291.50 Aligned_cols=295 Identities=13% Similarity=0.046 Sum_probs=214.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
++++|+|||||||||||++|+++|++.|+ +... ...+++.+.+|
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~---------~~~~---------------------------~~~~~~~~~~D 46 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG---------LPGE---------------------------DWVFVSSKDAD 46 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC---------CTTC---------------------------EEEECCTTTCC
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC---------cccc---------------------------cccccCceecc
Confidence 35789999999999999999999999986 1110 12345556899
Q ss_pred CCCCCCCCCHHHHHHHhcc--ccEEEEcccccCh----hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccC
Q psy6053 179 AEADELAIKESDRQLLASE--VDIMIHGAATIRF----DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQ 252 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~ 252 (614)
+++++ .+..++++ +|+|||+||.+.. .......+++|+.||.+++++|++. ++++|||+||.++++.
T Consensus 47 ~~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~~v~~SS~~vyg~ 119 (319)
T 4b8w_A 47 LTDTA------QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GARKVVSCLSTCIFPD 119 (319)
T ss_dssp TTSHH------HHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSCS
T ss_pred cCCHH------HHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEEcchhhcCC
Confidence 99865 78888887 9999999998752 2345678899999999999999995 8999999999988765
Q ss_pred Cc--ccccccCC-CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCC-chhhhHHHHHHHHHHHhh-CCCCEEEeecceee
Q psy6053 253 EK--VLYEKPYP-PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPN-SYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIII 327 (614)
Q Consensus 253 ~~--~i~E~~~~-~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn-~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~ 327 (614)
.. +++|+... .|.. ..+ +|+.||+.+|++++.+.+ .|++++|+||+.||
T Consensus 120 ~~~~~~~E~~~~~~~~~--------------------------p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~ 173 (319)
T 4b8w_A 120 KTTYPIDETMIHNGPPH--------------------------NSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVF 173 (319)
T ss_dssp SCCSSBCGGGGGBSCCC--------------------------SSSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEE
T ss_pred CCCCCccccccccCCCC--------------------------CCcchHHHHHHHHHHHHHHHHHhhCCCEEEEeecccc
Confidence 43 55665310 0000 013 599999999999998776 69999999999999
Q ss_pred cccCCCCccccCCCCchHHHHHH----HhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 328 PVWREPLPGWTDNINGPTGLLIG----AGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 328 g~~~~p~~gw~d~~~g~~~~~~~----~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
|+...+..+. + .....++.. +..|....++++++..++++||+|+|++++.++.+... ..+++||++++
T Consensus 174 Gp~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~---~~~~~~ni~~~- 246 (319)
T 4b8w_A 174 GPHDNFNIED--G-HVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNE---VEPIILSVGEE- 246 (319)
T ss_dssp CTTCCCCTTT--S-CHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCC---SSCEEECCCGG-
T ss_pred CCCCCCCCcc--c-cccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhcccc---CCceEEEecCC-
Confidence 9987542211 0 112233444 56677667788999999999999999999999987432 25679999998
Q ss_pred cccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy6053 404 EWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGF 483 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~ 483 (614)
+++|+.|+++.+.+.+|.+.++......+... ... ..-.+.+.+.+||+|.. .+.+.+.+
T Consensus 247 -~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~---~~~-------------~~d~~k~~~~lg~~p~~-~~~~~l~~-- 306 (319)
T 4b8w_A 247 -DEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQ---FKK-------------TASNSKLRTYLPDFRFT-PFKQAVKE-- 306 (319)
T ss_dssp -GCEEHHHHHHHHHHHTTCCSCEEEETTSCCCC---SCC-------------CBCCHHHHHHCTTCCCC-CHHHHHHH--
T ss_pred -CceeHHHHHHHHHHHhCCCCcEEeCCCCCcCc---ccc-------------cCCHHHHHHhcCCCCCC-CHHHHHHH--
Confidence 89999999999999988765543211111110 000 01124456779999976 57777776
Q ss_pred hhhhhhh
Q psy6053 484 EVFEYYA 490 (614)
Q Consensus 484 ~~~~~f~ 490 (614)
.++||.
T Consensus 307 -~~~~~~ 312 (319)
T 4b8w_A 307 -TCAWFT 312 (319)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 455554
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=289.83 Aligned_cols=302 Identities=15% Similarity=0.146 Sum_probs=214.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|+++|++ |+++.|........ ...+++++.+|++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~----------------------~~~~~~~~~~Dl~d~ 55 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYE---VVVVDNLSSGRREF----------------------VNPSAELHVRDLKDY 55 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEECCCSSCCGGG----------------------SCTTSEEECCCTTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCE---EEEEeCCCCCchhh----------------------cCCCceEEECccccH
Confidence 68999999999999999999999876 89999976542110 235688999999987
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--ccc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VLY 257 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i~ 257 (614)
+ +..++++ |+|||+||.... .......+++|+.||.+++++|++. ++++|||+||.++++... +++
T Consensus 56 ~-------~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~vyg~~~~~~~~ 126 (312)
T 3ko8_A 56 S-------WGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFASSSTVYGDADVIPTP 126 (312)
T ss_dssp T-------TTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCSSSSBC
T ss_pred H-------HHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeCcHHHhCCCCCCCCC
Confidence 5 3344555 999999996432 2345678899999999999999995 889999999998776543 566
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCcc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~g 336 (614)
|+....| .+.|+.||+.+|++++.+.. .|++++++||+.|||+...+
T Consensus 127 e~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~--- 174 (312)
T 3ko8_A 127 EEEPYKP-----------------------------ISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH--- 174 (312)
T ss_dssp TTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS---
T ss_pred CCCCCCC-----------------------------CChHHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC---
Confidence 6533333 27899999999999998876 69999999999999986532
Q ss_pred ccCCCCchHHHHHHHhcC-ceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 337 WTDNINGPTGLLIGAGKG-VIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 337 w~d~~~g~~~~~~~~~~g-~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
.....++..+..+ ......++++..+++++|+|+|++++.++.+... ....+++||++++ +++++.|+++.
T Consensus 175 -----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~~~ni~~~--~~~s~~e~~~~ 246 (312)
T 3ko8_A 175 -----GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEE-MDAPFLALNVGNV--DAVRVLDIAQI 246 (312)
T ss_dssp -----SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHH-SCCSEEEEEESCS--SCEEHHHHHHH
T ss_pred -----ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccc-cCCCCcEEEEcCC--CceeHHHHHHH
Confidence 1223455555555 3444678889999999999999999999987321 0126789999998 88999999999
Q ss_pred HhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhH--HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcce
Q psy6053 416 GKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIP--AYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQ 493 (614)
Q Consensus 416 ~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p--a~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~~ 493 (614)
+.+.+|.+.++.. .|...... .+ ....+ ..-.+.+.+.+||+|+. .+.+.+.+ .++|+..+.
T Consensus 247 i~~~~g~~~~~~~---~~~~~~~~-~~--------~~~~~~~~~d~~k~~~~lG~~p~~-~~~~~l~~---~~~~~~~~~ 310 (312)
T 3ko8_A 247 VAEVLGLRPEIRL---VPSTPDGR-GW--------PGDVKYMTLAVTKLMKLTGWRPTM-TSAEAVKK---TAEDLAKEL 310 (312)
T ss_dssp HHHHHTCCCEEEE---C-------------------CCCSEECBCCHHHHHHHCCCCSS-CHHHHHHH---HHHHHHHHH
T ss_pred HHHHhCCCCceee---cCcccccc-CC--------CCCccccccCHHHHHHHhCCCCCC-CHHHHHHH---HHHHHHhhh
Confidence 9999887643321 11100000 00 00000 01123445788999986 56777776 556665544
Q ss_pred E
Q psy6053 494 W 494 (614)
Q Consensus 494 w 494 (614)
|
T Consensus 311 ~ 311 (312)
T 3ko8_A 311 W 311 (312)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=287.21 Aligned_cols=310 Identities=15% Similarity=0.093 Sum_probs=218.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC-------cCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG-------KNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~-------~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
+|+|||||||||||++|+++|++.|++ |++++|.... ....+++.+. ...++.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~ 62 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYL---PVVIDNFHNAFRGGGSLPESLRRVQEL----------------TGRSVEF 62 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCC---EEEEECSSSSCBCSSSSBHHHHHHHHH----------------HTCCCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEecCCcccccccccHHHHHHHHhc----------------cCCceEE
Confidence 479999999999999999999999977 8999986543 1122222211 1246889
Q ss_pred EeCCCCCCCCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 175 ISGDAEADELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
+.+|+++++ .++.+++ ++|+|||+||..... +.....+++|+.||.+++++|++. ++++|||+||.++
T Consensus 63 ~~~D~~~~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~ 135 (348)
T 1ek6_A 63 EEMDILDQG------ALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATV 135 (348)
T ss_dssp EECCTTCHH------HHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGG
T ss_pred EECCCCCHH------HHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-CCCEEEEECcHHH
Confidence 999999865 7888887 799999999987643 345678899999999999999994 8899999999987
Q ss_pred ccCC--cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhC--CCCEEEeecce
Q psy6053 250 HLQE--KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNN--GMPCLMLRPSI 325 (614)
Q Consensus 250 ~~~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~--glp~~IvRp~~ 325 (614)
++.. .+++|+..+.| ..+.|+.||+.+|++++.+... +++++++||++
T Consensus 136 ~g~~~~~~~~E~~~~~p----------------------------~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~ 187 (348)
T 1ek6_A 136 YGNPQYLPLDEAHPTGG----------------------------CTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFN 187 (348)
T ss_dssp GCSCSSSSBCTTSCCCC----------------------------CSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECE
T ss_pred hCCCCCCCcCCCCCCCC----------------------------CCCchHHHHHHHHHHHHHHHhcCCCcceEEEeecc
Confidence 7643 35566533222 1278999999999999987642 49999999999
Q ss_pred eecccCCCCccccCC--CCchHHHHHHHh--cCceeeEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCC-c
Q psy6053 326 IIPVWREPLPGWTDN--INGPTGLLIGAG--KGVIRTMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHR-Q 394 (614)
Q Consensus 326 I~g~~~~p~~gw~d~--~~g~~~~~~~~~--~g~~~~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~-~ 394 (614)
|||+......|.... .......+.... .+....+++ +++..++++||+|+|++++.++.+... .. +
T Consensus 188 v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~---~~g~ 264 (348)
T 1ek6_A 188 PTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE---QCGC 264 (348)
T ss_dssp EECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT---TCCE
T ss_pred ccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccc---cCCc
Confidence 999865332222111 122233333333 344334444 577889999999999999999876521 13 3
Q ss_pred cEEEeccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHH
Q psy6053 395 SIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVK 474 (614)
Q Consensus 395 ~vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~ 474 (614)
++||++++ +++|+.|+++.+.+.+|.+.|... .|......... ..-.+.+.+.+||+|.. .
T Consensus 265 ~~~ni~~~--~~~s~~e~~~~i~~~~g~~~~~~~---~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~-~ 325 (348)
T 1ek6_A 265 RIYNLGTG--TGYSVLQMVQAMEKASGKKIPYKV---VARREGDVAAC-------------YANPSLAQEELGWTAAL-G 325 (348)
T ss_dssp EEEEECCS--CCEEHHHHHHHHHHHHCSCCCEEE---ECCCTTCCSEE-------------CBCCHHHHHTTCCCCCC-C
T ss_pred eEEEeCCC--CCccHHHHHHHHHHHhCCCCceee---CCCCCccchhh-------------ccCHHHHHHhcCCCCCC-C
Confidence 79999998 889999999999999887655421 22110000000 01123446789999976 3
Q ss_pred HHHHHHHHHhhhhhhh
Q psy6053 475 IQDRINKGFEVFEYYA 490 (614)
Q Consensus 475 l~~ki~~~~~~~~~f~ 490 (614)
+.+.+.+ .++||.
T Consensus 326 l~~~l~~---~~~w~~ 338 (348)
T 1ek6_A 326 LDRMCED---LWRWQK 338 (348)
T ss_dssp HHHHHHH---HHHHHH
T ss_pred HHHHHHH---HHHHHH
Confidence 6677776 455664
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=288.55 Aligned_cols=313 Identities=18% Similarity=0.160 Sum_probs=225.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|||||||||||++|+++|++.|++ |++++|...+. .++++++.+ +.......++.++.+|+
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~Dl 90 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQK---VVGLDNFATGH--QRNLDEVRS---------LVSEKQWSNFKFIQGDI 90 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCC--HHHHHHHHH---------HSCHHHHTTEEEEECCT
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCCccc--hhhHHHHhh---------hcccccCCceEEEECCC
Confidence 45789999999999999999999999875 89999976432 223332211 00000125789999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
++++ ++..+++++|+|||+||..... ..+...+++|+.||.+++++|++. ++++|||+||.++++...
T Consensus 91 ~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~ 163 (352)
T 1sb8_A 91 RNLD------DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGL 163 (352)
T ss_dssp TSHH------HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCS
T ss_pred CCHH------HHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhcCCCCCC
Confidence 9865 7889999999999999987643 345678899999999999999994 889999999998876543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+++|+..+.| .+.|+.||+.+|++++.+.. .|++++++||+.|||+...+
T Consensus 164 ~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~ 214 (352)
T 1sb8_A 164 PKVEDTIGKP-----------------------------LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDP 214 (352)
T ss_dssp SBCTTCCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCC
T ss_pred CCCCCCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCC
Confidence 5566543322 27899999999999988765 58999999999999987643
Q ss_pred CccccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 334 LPGWTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 334 ~~gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
...+ .+ ...++..+..|....++++++..+++++++|+|++++.++..... ..+++||++++ +++|+.|+
T Consensus 215 ~~~~----~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~---~~~~~~ni~~~--~~~s~~e~ 285 (352)
T 1sb8_A 215 NGAY----AAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLD---ARNQVYNIAVG--GRTSLNQL 285 (352)
T ss_dssp CSTT----CCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGG---GCSEEEEESCS--CCEEHHHH
T ss_pred Ccch----hhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccc---CCCceEEeCCC--CCccHHHH
Confidence 2111 12 223555566676656678889999999999999999988865211 25789999998 88999999
Q ss_pred HHHHhhhc---ccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhh
Q psy6053 413 IDIGKSIV---TTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYY 489 (614)
Q Consensus 413 ~~~~~~~~---g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f 489 (614)
++.+.+.+ |.+.+.. +.+.|........ ...-.+.+.+.+||+|.. .+.+.+.+ .++||
T Consensus 286 ~~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~-------------~~~d~~k~~~~lG~~p~~-~~~e~l~~---~~~~~ 347 (352)
T 1sb8_A 286 FFALRDGLAENGVSYHRE-PVYRDFREGDVRH-------------SLADISKAAKLLGYAPKY-DVSAGVAL---AMPWY 347 (352)
T ss_dssp HHHHHHHHHHTTCCCCCC-CEEECCCTTCCSB-------------CCBCCHHHHHHTCCCCCC-CHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhcCCCCCCC-ceecCCCccchhh-------------ccCCHHHHHHHhCCCCCC-CHHHHHHH---HHHHH
Confidence 99999998 8765432 1122211000000 001124456789999976 56677776 44454
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=294.96 Aligned_cols=309 Identities=16% Similarity=0.114 Sum_probs=222.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHh--hCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILR--KSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~--~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+|||||||||||++|+++|++ .|++ |++++|.........+..+.+. ..... ...++.++.+
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~---V~~~~r~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~ 75 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKAK---VVVLDKFRSNTLFSNNRPSSLG--------HFKNL-IGFKGEVIAA 75 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTSE---EEEEECCCCC-------CCCCC--------CGGGG-TTCCSEEEEC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCCe---EEEEECCCccccccccchhhhh--------hhhhc-cccCceEEEC
Confidence 5689999999999999999999999 7765 9999997653211111100000 00000 2346789999
Q ss_pred CCCCCCCCCCHHHHHHH-hccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-
Q psy6053 178 DAEADELAIKESDRQLL-ASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK- 254 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l-~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~- 254 (614)
|+++++ +++.+ ..++|+|||+||.+.. ...+...+++|+.||.+++++|++. +++ |||+||+++++...
T Consensus 76 Dl~d~~------~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~V~~SS~~vyg~~~~ 147 (362)
T 3sxp_A 76 DINNPL------DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSK-KAK-VIYASSAGVYGNTKA 147 (362)
T ss_dssp CTTCHH------HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHT-TCE-EEEEEEGGGGCSCCS
T ss_pred CCCCHH------HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHc-CCc-EEEeCcHHHhCCCCC
Confidence 999876 78888 7899999999997764 3556788999999999999999994 776 99999987776543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~ 334 (614)
+++|+....| .+.|+.||+.+|++++.+.. .++++++||++|||+...+.
T Consensus 148 ~~~E~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~-~~~~~~lR~~~v~Gp~~~~~ 197 (362)
T 3sxp_A 148 PNVVGKNESP-----------------------------ENVYGFSKLCMDEFVLSHSN-DNVQVGLRYFNVYGPREFYK 197 (362)
T ss_dssp SBCTTSCCCC-----------------------------SSHHHHHHHHHHHHHHHTTT-TSCEEEEEECSEESTTCGGG
T ss_pred CCCCCCCCCC-----------------------------CChhHHHHHHHHHHHHHHhc-cCCEEEEEeCceeCcCCCCC
Confidence 5666543333 27899999999999999987 49999999999999976432
Q ss_pred ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 335 PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
..+. .....++..+..|....++++++..+++++|+|+|++++.++.... .+ +||++++ +++++.|+++
T Consensus 198 ~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~~-----~g-~~~i~~~--~~~s~~e~~~ 266 (362)
T 3sxp_A 198 EKTA---SMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQK-----SG-VYNVGYS--QARSYNEIVS 266 (362)
T ss_dssp GGGS---CHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCSS-----CE-EEEESCS--CEEEHHHHHH
T ss_pred Ccch---hHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcCC-----CC-EEEeCCC--CCccHHHHHH
Confidence 1110 1233466667777776667888899999999999999999886542 45 9999999 8999999999
Q ss_pred HHhhhcccccCCCCccccCCc-ccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 415 IGKSIVTTEVPLNGCVWYPGG-SMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 415 ~~~~~~g~~~p~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
.+.+.+| +.++. +.|.. ..... -...-.+.+.+.+||+|.. .+.+.+.+ .++||.
T Consensus 267 ~i~~~~g-~~~~~---~~~~~~~~~~~-------------~~~~d~~k~~~~lG~~p~~-~l~e~l~~---~~~~~~ 322 (362)
T 3sxp_A 267 ILKEHLG-DFKVT---YIKNPYAFFQK-------------HTQAHIEPTILDLDYTPLY-DLESGIKD---YLPHIH 322 (362)
T ss_dssp HHHHHHC-CCEEE---CCC-------C-------------CCCBCCHHHHHHHCCCCCC-CHHHHHHH---HHHHHT
T ss_pred HHHHHcC-CCceE---ECCCCCcCccc-------------ceecCHHHHHHHhCCCCCC-CHHHHHHH---HHHHHH
Confidence 9999988 54432 22211 00000 0001123445789999987 67777777 455554
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=282.89 Aligned_cols=289 Identities=15% Similarity=0.091 Sum_probs=213.2
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+.+.|+|||||||||||++|+++|++.|++ |++++|..... . -++.++.+|
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~~~~~-------------------------~-l~~~~~~~D 59 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVE---VFGTSRNNEAK-------------------------L-PNVEMISLD 59 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCTTCC-------------------------C-TTEEEEECC
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCE---EEEEecCCccc-------------------------c-ceeeEEECC
Confidence 345689999999999999999999999875 89999976431 1 157889999
Q ss_pred CCCCCCCCCHHHHHHHhcc--ccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC
Q psy6053 179 AEADELAIKESDRQLLASE--VDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE 253 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~ 253 (614)
+++++ ++..++++ +|+|||+||...... .+...+++|+.||.+++++|++++++++|||+||.++++..
T Consensus 60 l~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~ 133 (321)
T 2pk3_A 60 IMDSQ------RVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMI 133 (321)
T ss_dssp TTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSC
T ss_pred CCCHH------HHHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCC
Confidence 99865 78888876 999999999876432 46778999999999999999886468999999999877643
Q ss_pred ----cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeec
Q psy6053 254 ----KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIP 328 (614)
Q Consensus 254 ----~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g 328 (614)
.+++|+....| .+.|+.||+.+|++++.+.. .|++++++||+.|||
T Consensus 134 ~~~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g 184 (321)
T 2pk3_A 134 LPEESPVSEENQLRP-----------------------------MSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIG 184 (321)
T ss_dssp CGGGCSBCTTSCCBC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEEC
T ss_pred CCCCCCCCCCCCCCC-----------------------------CCccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccC
Confidence 35666533222 27899999999999998766 589999999999999
Q ss_pred ccCCCCccccCCCCchHHHHHHHhc---C--ceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 329 VWREPLPGWTDNINGPTGLLIGAGK---G--VIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 329 ~~~~p~~gw~d~~~g~~~~~~~~~~---g--~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
+...+. .....++..+.. | ......++++...++++++|+|++++.++.... .+++||++++
T Consensus 185 ~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-----~g~~~~i~~~- 251 (321)
T 2pk3_A 185 PGQSLG-------FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYGK-----TGDVYNVCSG- 251 (321)
T ss_dssp TTCCTT-------SHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEESCS-
T ss_pred cCCCCC-------chHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCCC-----CCCeEEeCCC-
Confidence 875420 011233444444 5 334456788889999999999999999987642 5689999998
Q ss_pred cccccHHHHHHHHhhhcccccCCCCccccCC--cccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy6053 404 EWQVSWQEIIDIGKSIVTTEVPLNGCVWYPG--GSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINK 481 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~ 481 (614)
.++++.|+++.+.+.+|.+.+.. +.|. ....... ...-.+.+.+.+||+|.. .+.+.+.+
T Consensus 252 -~~~s~~e~~~~i~~~~g~~~~~~---~~p~~~~~~~~~~-------------~~~d~~k~~~~lG~~p~~-~~~e~l~~ 313 (321)
T 2pk3_A 252 -IGTRIQDVLDLLLAMANVKIDTE---LNPLQLRPSEVPT-------------LIGSNKRLKDSTGWKPRI-PLEKSLFE 313 (321)
T ss_dssp -CEEEHHHHHHHHHHHSSSCCEEE---ECGGGCCSSCCSB-------------CCBCCHHHHHHHCCCCCS-CHHHHHHH
T ss_pred -CCeeHHHHHHHHHHHhCCCCcee---eccccCCCcccch-------------hccCHHHHHHHcCCCcCC-CHHHHHHH
Confidence 88999999999999988764432 1121 0000000 001124456778999986 67777776
Q ss_pred H
Q psy6053 482 G 482 (614)
Q Consensus 482 ~ 482 (614)
.
T Consensus 314 ~ 314 (321)
T 2pk3_A 314 I 314 (321)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=293.06 Aligned_cols=322 Identities=13% Similarity=0.130 Sum_probs=220.6
Q ss_pred CcEEEEecccccccHHHHHHHH-hhCCCccEEEEEEccCCCc------CHHHHHHHHHhChhhHHhhhhccccccCe---
Q psy6053 102 GKTLFMTGASGFLGKVLLEKIL-RKSPNVKKIYILMRQKKGK------NARQRIEELFASPLFNLLKSVHGQKIIDK--- 171 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll-~~g~~v~~V~~LvR~~~~~------~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~--- 171 (614)
+|+|||||||||||++|+++|+ +.|++ |+++.|..... ...+++.+.++ .+.... ...+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~ 70 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHS---VVIVDSLVGTHGKSDHVETRENVARKLQ-----QSDGPK---PPWADRY 70 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCE---EEEEECCTTTTTCCTTSCCHHHHHHHHH-----HSCSSC---CTTTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCE---EEEEecCCcccccccccchHHHHHHHHH-----Hhhccc---cccCCce
Confidence 5799999999999999999999 98865 89999975432 00223322111 000000 0124
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHhc--c-ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 172 VLPISGDAEADELAIKESDRQLLAS--E-VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs~~~~~~l~~--~-vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
+.++.+|+++++ .+..+++ + +|+|||+||..... +.....+++|+.||.+++++|++. ++++|||+|
T Consensus 71 ~~~~~~Dl~d~~------~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~iv~~S 143 (397)
T 1gy8_A 71 AALEVGDVRNED------FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSS 143 (397)
T ss_dssp CEEEESCTTCHH------HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred EEEEECCCCCHH------HHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CCCEEEEEC
Confidence 889999999865 7888877 6 99999999987653 345678999999999999999994 889999999
Q ss_pred CceeccCCc---------ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CC
Q psy6053 246 TAYCHLQEK---------VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NG 315 (614)
Q Consensus 246 T~~~~~~~~---------~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~g 315 (614)
|.++++... +++|+..+.| .+.|+.||+.+|++++.+.. .|
T Consensus 144 S~~v~g~~~~~~~~~~~~~~~E~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~g 194 (397)
T 1gy8_A 144 SAAIFGNPTMGSVSTNAEPIDINAKKSP-----------------------------ESPYGESKLIAERMIRDCAEAYG 194 (397)
T ss_dssp EGGGTBSCCC-----CCCCBCTTSCCBC-----------------------------SSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHhCCCCcccccccccCcCccCCCCC-----------------------------CCchHHHHHHHHHHHHHHHHHHC
Confidence 997765432 3444422211 27899999999999998876 58
Q ss_pred CCEEEeecceeecccCCCCccccCC-CCchHHHHH-----HHhcCce------------eeEee------CCCcccccee
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDN-INGPTGLLI-----GAGKGVI------------RTMFC------DNTGYADFLP 371 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~-~~g~~~~~~-----~~~~g~~------------~~~~~------~~~~~~d~vp 371 (614)
++++++||+.|||+...+..|+.+. .......+. .+..|.. ..+++ ++++.+++||
T Consensus 195 i~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~ 274 (397)
T 1gy8_A 195 IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVH 274 (397)
T ss_dssp CEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEE
T ss_pred CcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEe
Confidence 9999999999999976544343221 122333333 4445532 23455 6788999999
Q ss_pred HHHHHHHHHHHHHhhhhcC-CCCc---cEEEeccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHH
Q psy6053 372 VDITINGIFVAIWAYLSQK-EHRQ---SIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQIC 447 (614)
Q Consensus 372 VDdva~aii~~~~~~~~~~-~~~~---~vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~ 447 (614)
|+|+|++++.++....... ...+ ++||++++ +++|+.|+++.+.+.+|.+.|... .|.........
T Consensus 275 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~~~~~~---~~~~~~~~~~~----- 344 (397)
T 1gy8_A 275 VCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGHPIPVRE---CGRREGDPAYL----- 344 (397)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCCCCCEEE---ECCCTTCCSEE-----
T ss_pred HHHHHHHHHHHHhcccccccccccCCCcEEEeCCC--CcccHHHHHHHHHHHhCCCCCeee---CCCCCCccccc-----
Confidence 9999999999987654200 0013 79999998 889999999999999887655421 22110000000
Q ss_pred HHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhc
Q psy6053 448 VIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYAN 491 (614)
Q Consensus 448 ~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~ 491 (614)
..-.+.+.+.+||+|....+.+.+.+ .++||..
T Consensus 345 --------~~d~~k~~~~lG~~p~~~~l~e~l~~---~~~~~~~ 377 (397)
T 1gy8_A 345 --------VAASDKAREVLGWKPKYDTLEAIMET---SWKFQRT 377 (397)
T ss_dssp --------CBCCHHHHHHTCCCCSCCSHHHHHHH---HHHHHHT
T ss_pred --------ccCHHHHHHHhCCCCCcCCHHHHHHH---HHHHHHh
Confidence 01123456789999986456677776 4556643
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=284.31 Aligned_cols=305 Identities=19% Similarity=0.189 Sum_probs=217.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++|+++|++.|++ .+|+++.|....... ++++++ . ...+++++.+|++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~-~~V~~~~r~~~~~~~-~~~~~~--------------~-~~~~~~~~~~Dl~ 64 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPD-WEVINIDKLGYGSNP-ANLKDL--------------E-DDPRYTFVKGDVA 64 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG-GGGTTT--------------T-TCTTEEEEECCTT
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCC-CEEEEEecCcccCch-hHHhhh--------------c-cCCceEEEEcCCC
Confidence 3578999999999999999999999743 259999997532111 111100 0 1247899999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC--cc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE--KV 255 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~--~~ 255 (614)
+++ .++.++.++|+|||+||..... ......+++|+.||.+++++|.+.+..++|||+||.++++.. .+
T Consensus 65 d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~ 138 (336)
T 2hun_A 65 DYE------LVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGS 138 (336)
T ss_dssp CHH------HHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSC
T ss_pred CHH------HHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCC
Confidence 865 7888889999999999987643 344678899999999999999996334799999999776643 35
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~ 334 (614)
++|+....| .+.|+.||+.+|++++.+.. .|++++++||+.|||+...+.
T Consensus 139 ~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~ 189 (336)
T 2hun_A 139 FTENDRLMP-----------------------------SSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPE 189 (336)
T ss_dssp BCTTBCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTT
T ss_pred cCCCCCCCC-----------------------------CCccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC
Confidence 566533222 27899999999999998876 699999999999999875320
Q ss_pred ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 335 PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
.....++..+..|....++++++...++++++|+|++++.++.... .+++||++++ +++|+.|+++
T Consensus 190 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-----~g~~~~v~~~--~~~s~~e~~~ 255 (336)
T 2hun_A 190 -------KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE-----SREIYNISAG--EEKTNLEVVK 255 (336)
T ss_dssp -------SHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCS--CEECHHHHHH
T ss_pred -------chHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCC-----CCCEEEeCCC--CcccHHHHHH
Confidence 1122355556666655567788889999999999999999886532 5789999998 8899999999
Q ss_pred HHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 415 IGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 415 ~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
.+.+.+|.+.|... +.+........+ ..-.+.+.+.+||+|.. .+.+.+.+ .++||.
T Consensus 256 ~i~~~~g~~~~~~~--~~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~-~~~~~l~~---~~~~~~ 312 (336)
T 2hun_A 256 IILRLMGKGEELIE--LVEDRPGHDLRY-------------SLDSWKITRDLKWRPKY-TFDEGIKK---TIDWYL 312 (336)
T ss_dssp HHHHHTTCCSTTEE--EECCCTTCCCCC-------------CBCCHHHHHHHCCCCSS-CHHHHHHH---HHHHHH
T ss_pred HHHHHhCCCccccc--ccCCCCCchhhh-------------cCCHHHHHHHhCCCCCC-CHHHHHHH---HHHHHH
Confidence 99999888654221 111110000000 01123456778999976 47777776 455654
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=287.26 Aligned_cols=245 Identities=15% Similarity=0.157 Sum_probs=192.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.| . ++++.|....... . ...++.++.+|+++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~---~v~~~~~~~~~~~---------------------~-~~~~~~~~~~Dl~~- 54 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-E---IVVIDNLSSGNEE---------------------F-VNEAARLVKADLAA- 54 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-C---EEEECCCSSCCGG---------------------G-SCTTEEEECCCTTT-
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-C---EEEEEcCCCCChh---------------------h-cCCCcEEEECcCCh-
Confidence 689999999999999999999998 4 5556554332110 0 33578999999998
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--ccc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VLY 257 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i~ 257 (614)
+ ++..+++++|+|||+||.... .+.+...+++|+.||.+++++|++. ++++|||+||..+++... +++
T Consensus 55 ~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~vyg~~~~~~~~ 127 (313)
T 3ehe_A 55 D------DIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVSRIVFTSTSTVYGEAKVIPTP 127 (313)
T ss_dssp S------CCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGGCSCSSSSBC
T ss_pred H------HHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCchHHhCcCCCCCCC
Confidence 5 577888899999999996432 2456778999999999999999995 789999999998776543 556
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCcc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~g 336 (614)
|+....| .+.|+.||+.+|++++.+.. .|++++++||+.|||+...+
T Consensus 128 E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--- 175 (313)
T 3ehe_A 128 EDYPTHP-----------------------------ISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH--- 175 (313)
T ss_dssp TTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC---
T ss_pred CCCCCCC-----------------------------CCHHHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc---
Confidence 6533222 27899999999999999876 79999999999999987542
Q ss_pred ccCCCCchHHHHHHHhcC-ceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 337 WTDNINGPTGLLIGAGKG-VIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 337 w~d~~~g~~~~~~~~~~g-~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
.....++..+..+ ....++++++..+++++|+|+|++++.++... ..+++||++++ +++|+.|+++.
T Consensus 176 -----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-----~~~~~~ni~~~--~~~s~~e~~~~ 243 (313)
T 3ehe_A 176 -----GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGD-----ERVNIFNIGSE--DQIKVKRIAEI 243 (313)
T ss_dssp -----SHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCC-----SSEEEEECCCS--CCEEHHHHHHH
T ss_pred -----ChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccC-----CCCceEEECCC--CCeeHHHHHHH
Confidence 1123455555555 34456788999999999999999999988722 26789999999 89999999999
Q ss_pred HhhhcccccC
Q psy6053 416 GKSIVTTEVP 425 (614)
Q Consensus 416 ~~~~~g~~~p 425 (614)
+.+.+|.+.+
T Consensus 244 i~~~~g~~~~ 253 (313)
T 3ehe_A 244 VCEELGLSPR 253 (313)
T ss_dssp HHHHTTCCCE
T ss_pred HHHHhCCCCc
Confidence 9999887643
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=292.62 Aligned_cols=310 Identities=16% Similarity=0.108 Sum_probs=217.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++|+|||||||||||++|+++|++.| ++ |++++|...... ++ +. ...+++++.+|
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~--~~------------l~------~~~~v~~~~~D 86 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQ---VHVVDNLLSAEK--IN------------VP------DHPAVRFSETS 86 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSE---EEEECCCTTCCG--GG------------SC------CCTTEEEECSC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCce---EEEEECCCCCch--hh------------cc------CCCceEEEECC
Confidence 568999999999999999999999998 65 999999764321 00 00 12578999999
Q ss_pred CCCCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-
Q psy6053 179 AEADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK- 254 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~- 254 (614)
+++++ ++.++++++|+|||+||..... .+....+++|+.||.+++++|++.+++++|||+||.++++...
T Consensus 87 l~d~~------~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~ 160 (377)
T 2q1s_A 87 ITDDA------LLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTF 160 (377)
T ss_dssp TTCHH------HHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------
T ss_pred CCCHH------HHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCC
Confidence 99865 7888899999999999987653 3456788999999999999999832789999999998776543
Q ss_pred -ccc--cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 255 -VLY--EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 255 -~i~--E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
+++ |+....|. ....+.|+.||+.+|++++.+.. .|++++++||+.|||+.
T Consensus 161 ~~~~~~E~~~~~~~-------------------------~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~ 215 (377)
T 2q1s_A 161 DDAKATEETDIVSL-------------------------HNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPG 215 (377)
T ss_dssp ------CCCCCCCS-------------------------SCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred CCcCcccccccccc-------------------------cCCCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCC
Confidence 344 54311011 01127899999999999998765 59999999999999997
Q ss_pred CCCCcc-ccCCC-----CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHH-HHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 331 REPLPG-WTDNI-----NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITING-IFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 331 ~~p~~g-w~d~~-----~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~a-ii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
..+.+| |.... .....++..+..|....++++++..+++++|+|+|++ ++.++..+. .+ +||++++
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~-----~g-~~~i~~~- 288 (377)
T 2q1s_A 216 EILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP-----GG-VYNIASG- 288 (377)
T ss_dssp CCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT-----TE-EEECCCC-
T ss_pred CcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC-----CC-eEEecCC-
Confidence 632222 22111 1123455566677655566788899999999999999 888887632 45 9999998
Q ss_pred cccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy6053 404 EWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGF 483 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~ 483 (614)
+++|+.|+++.+.+.+|.+.++.. .|....... . -...-.+.+.+.+||+|.. .+.+.+.+
T Consensus 289 -~~~s~~e~~~~i~~~~g~~~~~~~---~p~~~~~~~---~---------~~~~d~~k~~~~lG~~p~~-~l~e~l~~-- 349 (377)
T 2q1s_A 289 -KETSIADLATKINEITGNNTELDR---LPKRPWDNS---G---------KRFGSPEKARRELGFSADV-SIDDGLRK-- 349 (377)
T ss_dssp -CCEEHHHHHHHHHHHHTCCSCCCC---CCCCGGGCC-------------CCCCCCHHHHHHHCCCCCC-CHHHHHHH--
T ss_pred -CceeHHHHHHHHHHHhCCCCCcee---CCCCccccc---c---------ccccCHHHHHHHcCCCCCC-CHHHHHHH--
Confidence 889999999999999888655432 221100000 0 0001123455678999976 46677766
Q ss_pred hhhhhhh
Q psy6053 484 EVFEYYA 490 (614)
Q Consensus 484 ~~~~~f~ 490 (614)
.++||.
T Consensus 350 -~~~~~~ 355 (377)
T 2q1s_A 350 -TIEWTK 355 (377)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 445554
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=286.78 Aligned_cols=321 Identities=15% Similarity=0.154 Sum_probs=216.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.|++ |++++|..... ..+.++++ . ...+++++.+|++++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~-~~~~~~~l---------~------~~~~~~~~~~Dl~d~ 62 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGID---LIVFDNLSRKG-ATDNLHWL---------S------SLGNFEFVHGDIRNK 62 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSTT-HHHHHHHH---------H------TTCCCEEEECCTTCH
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCE---EEEEeCCCccC-chhhhhhh---------c------cCCceEEEEcCCCCH
Confidence 68999999999999999999999876 89999864321 11222221 1 124688999999986
Q ss_pred CCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCc-eEEEEeCceeccCCc--
Q psy6053 183 ELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHISTAYCHLQEK-- 254 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~V~vST~~~~~~~~-- 254 (614)
+ +++.++++ +|+|||+||..... +.+...+++|+.||.+++++|++. +++ +|||+||.++++...
T Consensus 63 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS~~v~g~~~~~ 135 (347)
T 1orr_A 63 N------DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQY 135 (347)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTS
T ss_pred H------HHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEeccHHHhCCCCcC
Confidence 5 78888888 99999999987653 345678899999999999999995 665 999999998776432
Q ss_pred cccccc--CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 255 VLYEKP--YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 ~i~E~~--~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+..|+. +..+..+ ...+++ .| ....+.|+.||+.+|++++.+.. .|++++++||+.|||+..
T Consensus 136 ~~~e~~~~~~~~~~~-------~~~~e~-----~~---~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~ 200 (347)
T 1orr_A 136 KYNETETRYTCVDKP-------NGYDES-----TQ---LDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQ 200 (347)
T ss_dssp CEEECSSCEEETTCT-------TCBCTT-----SC---CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTC
T ss_pred Ccccccccccccccc-------cCcccc-----CC---CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCC
Confidence 211110 0000000 000000 00 01236899999999999998766 589999999999999875
Q ss_pred CCCccccCCCCchHHHHHHHhcCc-----eeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGV-----IRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ 406 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~-----~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~ 406 (614)
.+.. +. .....++..+..|. ....++++++.+++++++|+|++++.++..... ..+++||++++..++
T Consensus 201 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~---~~g~~~~v~~~~~~~ 273 (347)
T 1orr_A 201 FATY---DQ-GWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSK---IRGNAFNIGGTIVNS 273 (347)
T ss_dssp CCBT---TB-CHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHH---HTTCEEEESSCGGGE
T ss_pred CCCC---cC-cHHHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhcccc---CCCCEEEeCCCCCCC
Confidence 4311 00 01123444444444 344578899999999999999999999875221 157799999883336
Q ss_pred ccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhh
Q psy6053 407 VSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVF 486 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~ 486 (614)
+|+.|+++.+.+.+|.+.+.....+.+... ... ..-.+.+.+.+||+|+. .+.+.+.+ .+
T Consensus 274 ~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~---~~~-------------~~d~~k~~~~lG~~p~~-~~~e~l~~---~~ 333 (347)
T 1orr_A 274 LSLLELFKLLEDYCNIDMRFTNLPVRESDQ---RVF-------------VADIKKITNAIDWSPKV-SAKDGVQK---MY 333 (347)
T ss_dssp EEHHHHHHHHHHHHTCCCCEEEECCCSSCC---SEE-------------CBCCHHHHHHHCCCCCS-CHHHHHHH---HH
T ss_pred ccHHHHHHHHHHHhCCCCCceeCCCCCCCc---cee-------------ecCHHHHHHHHCCCccC-CHHHHHHH---HH
Confidence 999999999999988765433211111110 000 01123445788999976 56677766 45
Q ss_pred hhhhc
Q psy6053 487 EYYAN 491 (614)
Q Consensus 487 ~~f~~ 491 (614)
+||..
T Consensus 334 ~~~~~ 338 (347)
T 1orr_A 334 DWTSS 338 (347)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=282.73 Aligned_cols=303 Identities=17% Similarity=0.173 Sum_probs=218.5
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCc--cEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK-SPNV--KKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~-g~~v--~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
|+|||||||||||++|+++|+++ ++++ .+|++++|....... ++++++ . ...+++++.+|+
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~-~~~~~~-------------~--~~~~~~~~~~Dl 64 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLAPV-------------D--ADPRLRFVHGDI 64 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGGGG-------------T--TCTTEEEEECCT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCch-hhhhhc-------------c--cCCCeEEEEcCC
Confidence 57999999999999999999996 3221 359999997532111 111100 0 125789999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC--c
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE--K 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~--~ 254 (614)
++++ .+.+++.++|+|||+||..... .+.+..+++|+.||.+++++|.+. ++++|||+||.++++.. .
T Consensus 65 ~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~~~~~v~~SS~~vyg~~~~~ 137 (337)
T 1r6d_A 65 RDAG------LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSIDSG 137 (337)
T ss_dssp TCHH------HHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCCSSS
T ss_pred CCHH------HHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecchHHhCCCCCC
Confidence 9865 7888889999999999987643 344578899999999999999995 78999999999777643 3
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+++|+....| .+.|+.||+.+|++++.+.. .|++++++||+.|||+...+
T Consensus 138 ~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~ 188 (337)
T 1r6d_A 138 SWTESSPLEP-----------------------------NSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP 188 (337)
T ss_dssp CBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT
T ss_pred CCCCCCCCCC-----------------------------CCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC
Confidence 5555532222 27899999999999988765 58999999999999987532
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
. .....++..+..|....++++++...++++++|+|++++.++.+.. .+++||++++ +++|+.|++
T Consensus 189 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~~~v~~~--~~~s~~e~~ 254 (337)
T 1r6d_A 189 E-------KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-----AGEIYHIGGG--LELTNRELT 254 (337)
T ss_dssp T-------SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCC--CEEEHHHHH
T ss_pred C-------ChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCCC-----CCCEEEeCCC--CCccHHHHH
Confidence 0 1122355556666655567888899999999999999999886532 5789999998 889999999
Q ss_pred HHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 414 DIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 414 ~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
+.+.+.+|.+.|.. .+.+........+ ..-.+.+.+.+||+|.. .+.+.+.+ .++||.
T Consensus 255 ~~i~~~~g~~~~~~--~~~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~-~~~e~l~~---~~~~~~ 312 (337)
T 1r6d_A 255 GILLDSLGADWSSV--RKVADRKGHDLRY-------------SLDGGKIERELGYRPQV-SFADGLAR---TVRWYR 312 (337)
T ss_dssp HHHHHHHTCCGGGE--EEECCCTTCCCBC-------------CBCCHHHHHHHCCCCCS-CHHHHHHH---HHHHHH
T ss_pred HHHHHHhCCCcccc--eecCCCCCCccee-------------ecCHHHHHHHcCCCCCC-CHHHHHHH---HHHHHH
Confidence 99999988865421 1111110000000 01123445678999976 36777776 445554
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=286.09 Aligned_cols=302 Identities=16% Similarity=0.165 Sum_probs=217.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||||++|+++|++.|++ .+|++++|....... +++.+ . ...+++++.+|+++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~-~~~~~-------------~---~~~~~~~~~~Dl~d 65 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNK-ANLEA-------------I---LGDRVELVVGDIAD 65 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG-GGTGG-------------G---CSSSEEEEECCTTC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCCh-hHHhh-------------h---ccCCeEEEECCCCC
Confidence 378999999999999999999999332 249999997532111 11100 0 12578999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC-----
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE----- 253 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~----- 253 (614)
++ .+..+++++|+|||+||..... ......+++|+.||.+++++|.+. ++ +|||+||.++++..
T Consensus 66 ~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~-~~v~~SS~~vyg~~~~~~~ 137 (348)
T 1oc2_A 66 AE------LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-DI-RFHHVSTDEVYGDLPLRED 137 (348)
T ss_dssp HH------HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGGCCBCCGGG
T ss_pred HH------HHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-CC-eEEEecccceeCCCccccc
Confidence 65 8899999999999999987643 334568899999999999999996 66 99999999776543
Q ss_pred ---------cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeec
Q psy6053 254 ---------KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRP 323 (614)
Q Consensus 254 ---------~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp 323 (614)
.+++|+.... ..+.|+.||+.+|++++.+.. .|++++++||
T Consensus 138 ~~~~~~~~~~~~~E~~~~~-----------------------------~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp 188 (348)
T 1oc2_A 138 LPGHGEGPGEKFTAETNYN-----------------------------PSSPYSSTKAASDLIVKAWVRSFGVKATISNC 188 (348)
T ss_dssp STTTTCSTTSSBCTTSCCC-----------------------------CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred ccccccccCCCcCCCCCCC-----------------------------CCCccHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 2333432111 127899999999999998765 5899999999
Q ss_pred ceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 324 SIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 324 ~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
+.|||+...+. .....++..+..|....++++++...++++++|+|++++.++.... .+++||++++
T Consensus 189 ~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-----~g~~~~i~~~- 255 (348)
T 1oc2_A 189 SNNYGPYQHIE-------KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGR-----MGETYLIGAD- 255 (348)
T ss_dssp CCEESTTCCTT-------SHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCC-----TTCEEEECCS-
T ss_pred ceeeCCCCCcc-------chHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCCC-----CCCeEEeCCC-
Confidence 99999875320 1122345556666655667888899999999999999999886532 5789999998
Q ss_pred cccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy6053 404 EWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGF 483 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~ 483 (614)
.++++.|+++.+.+.+|.+.|.. .+.+........+ ..-.+.+.+.+||+|....+.+.+.+
T Consensus 256 -~~~s~~e~~~~i~~~~g~~~~~~--~~~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~~~~~~~l~~-- 317 (348)
T 1oc2_A 256 -GEKNNKEVLELILEKMGQPKDAY--DHVTDRAGHDLRY-------------AIDASKLRDELGWTPQFTDFSEGLEE-- 317 (348)
T ss_dssp -CEEEHHHHHHHHHHHTTCCTTCS--EEECCCTTCCCBC-------------CBCCHHHHHHHCCCCSCCCHHHHHHH--
T ss_pred -CCCCHHHHHHHHHHHhCCCcccc--ccCCCCCCccccc-------------ccCHHHHHHHcCCCCCCCcHHHHHHH--
Confidence 88999999999999988765422 1222110000000 01123455678999986336677776
Q ss_pred hhhhhhh
Q psy6053 484 EVFEYYA 490 (614)
Q Consensus 484 ~~~~~f~ 490 (614)
.++||.
T Consensus 318 -~~~~~~ 323 (348)
T 1oc2_A 318 -TIQWYT 323 (348)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 445554
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=291.67 Aligned_cols=267 Identities=21% Similarity=0.198 Sum_probs=194.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+|+|||||||||||++|+++|++.|.+ |++++|+.....+.+++.+.+....-+.+.. . ...++.++.||+
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~---V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~---~-~~~~v~~v~~Dl 139 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHR---IYCFIRADNEEIAWYKLMTNLNDYFSEETVE---M-MLSNIEVIVGDF 139 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEE---EEEEEECSSHHHHHHHHHHHHHHHSCHHHHH---H-HHTTEEEEEECC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCE---EEEEECCCChHHHHHHHHHHHHHhccccccc---c-ccCceEEEeCCC
Confidence 45789999999999999999999888754 9999999876556677766554321110111 1 236899999999
Q ss_pred CCCC-CCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC-----
Q psy6053 180 EADE-LAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE----- 253 (614)
Q Consensus 180 ~~~~-lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~----- 253 (614)
++++ ++ ...++|+|||+||.++...++...+++|+.||.+++++|.+ +.++|||+||.++ +..
T Consensus 140 ~d~~~l~--------~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~~~~~~ 208 (427)
T 4f6c_A 140 ECMDDVV--------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDT 208 (427)
T ss_dssp ---CCCC--------CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSEECSSC
T ss_pred CCcccCC--------CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCCccCCC
Confidence 9944 42 66799999999999988788888999999999999999998 6789999999988 431
Q ss_pred --cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccC
Q psy6053 254 --KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 254 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~ 331 (614)
.+++|+....+. ...+.|+.||+.+|++++++.+.|++++|+|||.|+|+..
T Consensus 209 ~~~~~~E~~~~~~~--------------------------~~~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~ 262 (427)
T 4f6c_A 209 EDVTFSEADVYKGQ--------------------------LLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYN 262 (427)
T ss_dssp SCCEECTTCSCSSC--------------------------CCCSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSS
T ss_pred CCccccccccccCC--------------------------CCCCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCC
Confidence 244454321111 1248999999999999999876799999999999999976
Q ss_pred CCCccccCCC--CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccH
Q psy6053 332 EPLPGWTDNI--NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSW 409 (614)
Q Consensus 332 ~p~~gw~d~~--~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~ 409 (614)
.+. |..+. .....++.....+.... .++++..++++||||+|++++.++.... .+++||++++ ++++|
T Consensus 263 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~DvA~ai~~~~~~~~-----~g~~~~l~~~--~~~s~ 332 (427)
T 4f6c_A 263 GRW--HMRNIKTNRFSMVMNDLLQLDCIG-VSMAEMPVDFSFVDTTARQIVALAQVNT-----PQIIYHVLSP--NKMPV 332 (427)
T ss_dssp SCC--CCTTGGGCHHHHHHHHHHHSSEEE-HHHHTCEECCEEHHHHHHHHHHHTTSCC-----CCSEEEESCS--CCEEH
T ss_pred CCc--cccCcchHHHHHHHHHHHhcCCCC-CccccceEEEeeHHHHHHHHHHHHcCCC-----CCCEEEecCC--CCCcH
Confidence 531 11121 11234455554443322 1346889999999999999999886543 6789999999 89999
Q ss_pred HHHHHHHhhhcc
Q psy6053 410 QEIIDIGKSIVT 421 (614)
Q Consensus 410 ~e~~~~~~~~~g 421 (614)
.|+++.+.+. |
T Consensus 333 ~el~~~i~~~-g 343 (427)
T 4f6c_A 333 KSLLECVKRK-E 343 (427)
T ss_dssp HHHHHHHHSS-C
T ss_pred HHHHHHHHHc-C
Confidence 9999999985 7
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=289.07 Aligned_cols=299 Identities=17% Similarity=0.129 Sum_probs=220.0
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++|+++|++.|++ |++++|........ ...+++++.+|++
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~----------------------~~~~v~~~~~Dl~ 82 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHY---VIASDWKKNEHMTE----------------------DMFCDEFHLVDLR 82 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCCSSSCG----------------------GGTCSEEEECCTT
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCe---EEEEECCCccchhh----------------------ccCCceEEECCCC
Confidence 4689999999999999999999999865 89999986542100 1246889999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh----hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF----DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
+++ ++..+++++|+|||+||.... ..+....+++|+.||.+++++|++. ++++|||+||.++++...
T Consensus 83 d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~~V~~SS~~v~~~~~~~ 155 (379)
T 2c5a_A 83 VME------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQL 155 (379)
T ss_dssp SHH------HHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSS
T ss_pred CHH------HHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeehheeCCCCCC
Confidence 865 788999999999999997653 3456778999999999999999994 889999999998776432
Q ss_pred -----ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeec
Q psy6053 255 -----VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIP 328 (614)
Q Consensus 255 -----~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g 328 (614)
+++|+... | ....+.|+.||+.+|++++.+.. .|++++++||+.|||
T Consensus 156 ~~~~~~~~E~~~~-~--------------------------~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G 208 (379)
T 2c5a_A 156 ETTNVSLKESDAW-P--------------------------AEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYG 208 (379)
T ss_dssp SSSSCEECGGGGS-S--------------------------BCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEC
T ss_pred CccCCCcCcccCC-C--------------------------CCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeC
Confidence 23443200 0 01137899999999999988765 589999999999999
Q ss_pred ccCCCCccccCCCCchHHHHHHHhcCce-eeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccc
Q psy6053 329 VWREPLPGWTDNINGPTGLLIGAGKGVI-RTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQV 407 (614)
Q Consensus 329 ~~~~p~~gw~d~~~g~~~~~~~~~~g~~-~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~i 407 (614)
+...+..++. .....++..+..|.. ..++++++..+++++++|+|++++.++... .+++||++++ +++
T Consensus 209 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~------~~~~~ni~~~--~~~ 277 (379)
T 2c5a_A 209 PFGTWKGGRE---KAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD------FREPVNIGSD--EMV 277 (379)
T ss_dssp TTSCCSSSCC---CHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS------CCSCEEECCC--CCE
T ss_pred cCCCcccccc---cHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc------CCCeEEeCCC--Ccc
Confidence 9765432211 123345555656653 445688889999999999999999988653 4579999998 889
Q ss_pred cHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhh
Q psy6053 408 SWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFE 487 (614)
Q Consensus 408 t~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~ 487 (614)
|+.|+++.+.+.+|.+.+.. +.|........ ..-.+.+.+.+||+|.. .+.+.+.+ .++
T Consensus 278 s~~e~~~~i~~~~g~~~~~~---~~p~~~~~~~~--------------~~d~~k~~~~lG~~p~~-~l~e~l~~---~~~ 336 (379)
T 2c5a_A 278 SMNEMAEMVLSFEEKKLPIH---HIPGPEGVRGR--------------NSDNNLIKEKLGWAPNM-RLKEGLRI---TYF 336 (379)
T ss_dssp EHHHHHHHHHHTTTCCCCEE---EECCCCCCSBC--------------EECCHHHHHHHSCCCCC-CHHHHHHH---HHH
T ss_pred CHHHHHHHHHHHhCCCCcee---eCCCCCCcccc--------------cCCHHHHHHHhCCCCCC-CHHHHHHH---HHH
Confidence 99999999999988765432 12211000000 01123456778999986 46777776 445
Q ss_pred hhh
Q psy6053 488 YYA 490 (614)
Q Consensus 488 ~f~ 490 (614)
||.
T Consensus 337 ~~~ 339 (379)
T 2c5a_A 337 WIK 339 (379)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=284.56 Aligned_cols=310 Identities=13% Similarity=0.071 Sum_probs=217.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|||||||||||++|+++|++.|++ |++++|....... +.+. +. ...++.++.+|
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~---~~~~--------~~------~~~~~~~~~~D 65 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGAT---VKGYSLTAPTVPS---LFET--------AR------VADGMQSEIGD 65 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCSSSSC---HHHH--------TT------TTTTSEEEECC
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCCCe---EEEEeCCCcccch---hhHh--------hc------cCCceEEEEcc
Confidence 456899999999999999999999999875 9999997644221 1110 00 12478899999
Q ss_pred CCCCCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC
Q psy6053 179 AEADELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE 253 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~ 253 (614)
+++++ .+..++++ +|+|||+||..... ......+++|+.||.+++++|++++++++|||+||.++++..
T Consensus 66 l~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~ 139 (357)
T 1rkx_A 66 IRDQN------KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNK 139 (357)
T ss_dssp TTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCC
T ss_pred ccCHH------HHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCC
Confidence 99865 78888876 89999999965432 345678899999999999999996448999999999887654
Q ss_pred c---ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-C---------CCCEEE
Q psy6053 254 K---VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-N---------GMPCLM 320 (614)
Q Consensus 254 ~---~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~---------glp~~I 320 (614)
. ++.|+....| .+.|+.||+.+|++++.+.. . |+++++
T Consensus 140 ~~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~ 190 (357)
T 1rkx_A 140 EWIWGYRENEAMGG-----------------------------YDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVAT 190 (357)
T ss_dssp CSSSCBCTTSCBCC-----------------------------SSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEE
T ss_pred CcCCCCCCCCCCCC-----------------------------CCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEE
Confidence 3 3444422111 27899999999999988754 1 899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+||+.|||+...+. ......++..+..|....+ ++++..++++||+|+|++++.++..........+++||++
T Consensus 191 lrp~~v~G~~~~~~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~ 263 (357)
T 1rkx_A 191 VRAGNVIGGGDWAL------DRIVPDILRAFEQSQPVII-RNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFG 263 (357)
T ss_dssp EECCCEECTTCCCS------SCHHHHHHHHHHTTCCEEC-SCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECC
T ss_pred EeeceeeCCCCCcc------ccHHHHHHHHHhcCCCEEE-CCCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEEC
Confidence 99999999864221 0112345555566665433 4577889999999999999998875210000256899999
Q ss_pred cCCcccccHHHHHHHHhhhcccccCCCCccc-cCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHH
Q psy6053 401 SSQEWQVSWQEIIDIGKSIVTTEVPLNGCVW-YPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRI 479 (614)
Q Consensus 401 ~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki 479 (614)
+++.+++|+.|+++.+.+.+|.+.++..... .|.. .. -...-.+.+.+.+||+|.. .+.+.+
T Consensus 264 ~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~---~~-------------~~~~d~~k~~~~lG~~p~~-~l~e~l 326 (357)
T 1rkx_A 264 PNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHE---AH-------------YLKLDCSKAKMQLGWHPRW-NLNTTL 326 (357)
T ss_dssp CCGGGCEEHHHHHHHHHHHHCTTCCEEC-------C---CC-------------CCCBCCHHHHHHHCCCCCC-CHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcC---cc-------------cccCCHHHHHHHhCCCcCC-cHHHHH
Confidence 7533689999999999999887644321100 0000 00 0001123456778999976 677777
Q ss_pred HHHHhhhhhhh
Q psy6053 480 NKGFEVFEYYA 490 (614)
Q Consensus 480 ~~~~~~~~~f~ 490 (614)
.+ .++||.
T Consensus 327 ~~---~~~~~~ 334 (357)
T 1rkx_A 327 EY---IVGWHK 334 (357)
T ss_dssp HH---HHHHHH
T ss_pred HH---HHHHHH
Confidence 76 444553
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=281.19 Aligned_cols=265 Identities=13% Similarity=0.100 Sum_probs=198.6
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+|||||||||||++++++|++. |++ |++++|...... + +. ...+++++.+|+++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~---V~~~~r~~~~~~------~---------~~------~~~~~~~~~~D~~~ 56 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYE---VYGLDIGSDAIS------R---------FL------NHPHFHFVEGDISI 56 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCE---EEEEESCCGGGG------G---------GT------TCTTEEEEECCTTT
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCE---EEEEeCCcchHH------H---------hh------cCCCeEEEeccccC
Confidence 58999999999999999999998 665 999999753211 0 00 22478999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--cc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VL 256 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i 256 (614)
+. +.++.+++++|+|||+||.... .......+++|+.|+.+++++|++. + ++|||+||.++++... ++
T Consensus 57 ~~-----~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~v~~SS~~v~g~~~~~~~ 129 (345)
T 2bll_A 57 HS-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMCSDKYF 129 (345)
T ss_dssp CS-----HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTCCCSSB
T ss_pred cH-----HHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecHHHcCCCCCCCc
Confidence 53 2577788899999999997653 2345678899999999999999995 6 8999999998776543 45
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~ 335 (614)
+|+..+.+..+. ....+.|+.||+.+|++++.+.. .|++++++||+.|||+...+..
T Consensus 130 ~e~~~~~~~~~~----------------------~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~ 187 (345)
T 2bll_A 130 DEDHSNLIVGPV----------------------NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLN 187 (345)
T ss_dssp CTTTCCCBCCCT----------------------TCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTT
T ss_pred CCcccccccCcc----------------------cCcccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCccccc
Confidence 565332111100 01125899999999999988765 5999999999999999865422
Q ss_pred cccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc-cccHHHHH
Q psy6053 336 GWTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW-QVSWQEII 413 (614)
Q Consensus 336 gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~-~it~~e~~ 413 (614)
.+..+..+ ...++..+..|....++++++..+++++|+|+|++++.++.+... ...+++||++++ + ++|+.|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~~g~~~~i~~~--~~~~s~~e~~ 263 (345)
T 2bll_A 188 AARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN--RCDGEIINIGNP--ENEASIEELG 263 (345)
T ss_dssp CSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGG--TTTTEEEEECCT--TSEEEHHHHH
T ss_pred ccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhccc--cCCCceEEeCCC--CCCCCHHHHH
Confidence 11111111 234555666776666678888999999999999999999876531 015789999987 5 79999999
Q ss_pred HHHhhhccccc
Q psy6053 414 DIGKSIVTTEV 424 (614)
Q Consensus 414 ~~~~~~~g~~~ 424 (614)
+.+.+.+|.+.
T Consensus 264 ~~i~~~~g~~~ 274 (345)
T 2bll_A 264 EMLLASFEKHP 274 (345)
T ss_dssp HHHHHHHHTCT
T ss_pred HHHHHHhCCCc
Confidence 99999988754
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=280.01 Aligned_cols=248 Identities=14% Similarity=0.134 Sum_probs=186.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|||||||||||++|+++|+++|++ |++++|+..... + + ...+++++.+|++
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~---~------------l-------~~~~~~~~~~Dl~ 66 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHD---LVLIHRPSSQIQ---R------------L-------AYLEPECRVAEML 66 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEECTTSCGG---G------------G-------GGGCCEEEECCTT
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEecChHhhh---h------------h-------ccCCeEEEEecCC
Confidence 3468999999999999999999999875 899999764321 0 0 1136889999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc---cc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK---VL 256 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~---~i 256 (614)
+++ .+..+++++|+|||+||.... ..+....+++|+.||.+++++|++. ++++|||+||.++++... ..
T Consensus 67 d~~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 139 (342)
T 2x4g_A 67 DHA------GLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSAYAMPRHPQGLPG 139 (342)
T ss_dssp CHH------HHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHH-TCSCEEEECCGGGSCCCTTSSCB
T ss_pred CHH------HHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHhhCcCCCCCCC
Confidence 865 889999999999999997653 2455678899999999999999995 889999999998776432 22
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccC-CCCc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWR-EPLP 335 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~-~p~~ 335 (614)
+|+..+.|.. ...+.|+.||+.+|++++.+...|++++++||+.|||+.. .+
T Consensus 140 ~E~~~~~p~~-------------------------~~~~~Y~~sK~~~e~~~~~~~~~g~~~~ilrp~~v~g~~~~~~-- 192 (342)
T 2x4g_A 140 HEGLFYDSLP-------------------------SGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGP-- 192 (342)
T ss_dssp CTTCCCSSCC-------------------------TTSCHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEECSCCSSC--
T ss_pred CCCCCCCccc-------------------------cccChHHHHHHHHHHHHHHHhhcCCcEEEEeCCceECCCCccc--
Confidence 4543322200 0137899999999999998764489999999999999865 21
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
+ ...++..+..|....+ ++...++++++|+|++++.++.+.. .+++||++++ + +|+.|+++.
T Consensus 193 ----~---~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~~~~-----~g~~~~v~~~--~-~s~~e~~~~ 254 (342)
T 2x4g_A 193 ----T---TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALERGR-----IGERYLLTGH--N-LEMADLTRR 254 (342)
T ss_dssp ----S---TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHHHSC-----TTCEEEECCE--E-EEHHHHHHH
T ss_pred ----c---HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHhCCC-----CCceEEEcCC--c-ccHHHHHHH
Confidence 1 2234555556654433 5678899999999999999987643 3789999998 7 999999999
Q ss_pred HhhhcccccC
Q psy6053 416 GKSIVTTEVP 425 (614)
Q Consensus 416 ~~~~~g~~~p 425 (614)
+.+.+|.+.+
T Consensus 255 i~~~~g~~~~ 264 (342)
T 2x4g_A 255 IAELLGQPAP 264 (342)
T ss_dssp HHHHHTCCCC
T ss_pred HHHHhCCCCC
Confidence 9999887654
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=292.62 Aligned_cols=283 Identities=14% Similarity=0.064 Sum_probs=196.4
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC--------------HHHHHHHHHhChhhHHhhhh
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN--------------ARQRIEELFASPLFNLLKSV 163 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~--------------~~~Rl~~~~~~~~f~~l~~~ 163 (614)
.+.++++|||||||||||++|+++|++.|++ |+++.|...... ..+++.+... .
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 74 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNYE---VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA---------L 74 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHH---------H
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCCe---EEEEEecCccccccccccccccccchhhhhhhhHhh---------c
Confidence 4567899999999999999999999999876 888887532110 0112221110 0
Q ss_pred ccccccCeEEEEeCCCCCCCCCCCHHHHHHHhcc--ccEEEEcccccChhH------HHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 164 HGQKIIDKVLPISGDAEADELAIKESDRQLLASE--VDIMIHGAATIRFDE------ALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 164 ~p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~~------~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
...+++++.+|+++++ ++..++++ +|+|||+||...... .+...+++|+.||.+++++|++.
T Consensus 75 ----~~~~v~~~~~Dl~d~~------~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~ 144 (404)
T 1i24_A 75 ----TGKSIELYVGDICDFE------FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF 144 (404)
T ss_dssp ----HCCCCEEEESCTTSHH------HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCceEEEECCCCCHH------HHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 1246889999999865 78888887 999999999875432 12347799999999999999985
Q ss_pred CCC-ceEEEEeCceeccCCc-ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh
Q psy6053 236 KHL-ELFVHISTAYCHLQEK-VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN 313 (614)
Q Consensus 236 ~~~-k~~V~vST~~~~~~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~ 313 (614)
+. ++|||+||.++++... +++|+.++... ...+...+ ......+.|+.||+.+|+++..+..
T Consensus 145 -~~~~~~V~~SS~~vyg~~~~~~~E~~~~~~~--------------~~~~~~~~-~~~~~~~~Y~~sK~~~e~~~~~~~~ 208 (404)
T 1i24_A 145 -GEECHLVKLGTMGEYGTPNIDIEEGYITITH--------------NGRTDTLP-YPKQASSFYHLSKVHDSHNIAFTCK 208 (404)
T ss_dssp -CTTCEEEEECCGGGGCCCSSCBCSSEEEEEE--------------TTEEEEEE-CCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEeCcHHHhCCCCCCCCcccccccc--------------cccccccc-CCCCCCChhHHHHHHHHHHHHHHHH
Confidence 65 5999999998776543 44443110000 00000000 0011237899999999999988765
Q ss_pred -CCCCEEEeecceeecccCCC---CccccCCC-------CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHH
Q psy6053 314 -NGMPCLMLRPSIIIPVWREP---LPGWTDNI-------NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVA 382 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p---~~gw~d~~-------~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~ 382 (614)
.|++++++||+.|||+...+ .++|++.. .....++..+..|....+++++++.++++||+|+|++++.+
T Consensus 209 ~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~ 288 (404)
T 1i24_A 209 AWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIA 288 (404)
T ss_dssp HHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHH
T ss_pred hcCCeEEEEecceeeCCCCCccccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHH
Confidence 58999999999999997654 12232211 11334666667776666778889999999999999999999
Q ss_pred HHhhhhcCCCCc--cEEEeccCCcccccHHHHHHHHhhh---cccccC
Q psy6053 383 IWAYLSQKEHRQ--SIVHLTSSQEWQVSWQEIIDIGKSI---VTTEVP 425 (614)
Q Consensus 383 ~~~~~~~~~~~~--~vyni~~~~~~~it~~e~~~~~~~~---~g~~~p 425 (614)
+..... .+ ++||+++ +++|+.|+++.+.+. +|.+.+
T Consensus 289 l~~~~~----~g~~~~yni~~---~~~s~~e~~~~i~~~~~~~g~~~~ 329 (404)
T 1i24_A 289 IANPAK----AGEFRVFNQFT---EQFSVNELASLVTKAGSKLGLDVK 329 (404)
T ss_dssp HHSCCC----TTCEEEEEECS---EEEEHHHHHHHHHHHHHTTTCCCC
T ss_pred HhCccc----CCCceEEEECC---CCCcHHHHHHHHHHHHHhhCCCcc
Confidence 876431 34 7999986 469999999999987 676544
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-32 Score=279.20 Aligned_cols=270 Identities=14% Similarity=0.069 Sum_probs=203.2
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+||||| +||||++|+++|++.|++ |++++|+... ...+++++.+|++
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~---V~~~~r~~~~--------------------------~~~~~~~~~~Dl~ 51 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHE---VTGLRRSAQP--------------------------MPAGVQTLIADVT 51 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCC---EEEEECTTSC--------------------------CCTTCCEEECCTT
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCE---EEEEeCCccc--------------------------cccCCceEEccCC
Confidence 468999999 599999999999999987 8999998643 2256889999999
Q ss_pred CCCCCCCHHHHHHHhcc-ccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--ccc
Q psy6053 181 ADELAIKESDRQLLASE-VDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VLY 257 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~-vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i~ 257 (614)
+++ .+..++++ +|+|||+||... .......++|+.||.+++++|++ .++++|||+||.++++... +++
T Consensus 52 d~~------~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~ll~a~~~-~~~~~~v~~SS~~vyg~~~~~~~~ 122 (286)
T 3gpi_A 52 RPD------TLASIVHLRPEILVYCVAASE--YSDEHYRLSYVEGLRNTLSALEG-APLQHVFFVSSTGVYGQEVEEWLD 122 (286)
T ss_dssp CGG------GCTTGGGGCCSEEEECHHHHH--HC-----CCSHHHHHHHHHHTTT-SCCCEEEEEEEGGGCCCCCSSEEC
T ss_pred ChH------HHHHhhcCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHhh-CCCCEEEEEcccEEEcCCCCCCCC
Confidence 876 67777777 999999999743 34566789999999999999998 5899999999998776543 566
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGW 337 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw 337 (614)
|+....|. +.|+.||+.+|++ .++ ++++|+||+.|||+...
T Consensus 123 E~~~~~p~-----------------------------~~Y~~sK~~~E~~-~~~----~~~~ilR~~~v~G~~~~----- 163 (286)
T 3gpi_A 123 EDTPPIAK-----------------------------DFSGKRMLEAEAL-LAA----YSSTILRFSGIYGPGRL----- 163 (286)
T ss_dssp TTSCCCCC-----------------------------SHHHHHHHHHHHH-GGG----SSEEEEEECEEEBTTBC-----
T ss_pred CCCCCCCC-----------------------------ChhhHHHHHHHHH-Hhc----CCeEEEecccccCCCch-----
Confidence 66443332 7899999999999 554 89999999999998642
Q ss_pred cCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHh
Q psy6053 338 TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGK 417 (614)
Q Consensus 338 ~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~ 417 (614)
.++..+.. . ...++++...++++++|+|++++.++.++.. ...+++||++++ +++|+.|+++.+.
T Consensus 164 --------~~~~~~~~-~--~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~--~~~~~~~~~~~~--~~~s~~e~~~~i~ 228 (286)
T 3gpi_A 164 --------RMIRQAQT-P--EQWPARNAWTNRIHRDDGAAFIAYLIQQRSH--AVPERLYIVTDN--QPLPVHDLLRWLA 228 (286)
T ss_dssp --------HHHHHTTC-G--GGSCSSBCEECEEEHHHHHHHHHHHHHHHTT--SCCCSEEEECCS--CCEEHHHHHHHHH
T ss_pred --------hHHHHHHh-c--ccCCCcCceeEEEEHHHHHHHHHHHHhhhcc--CCCCceEEEeCC--CCCCHHHHHHHHH
Confidence 23333333 2 2246788999999999999999999987521 126789999998 8899999999999
Q ss_pred hhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy6053 418 SIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGF 483 (614)
Q Consensus 418 ~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~ 483 (614)
+.+|.+.+.......+.. .. .-.+.+ +.+||+|+...+.+.+.+..
T Consensus 229 ~~~g~~~~~~~~~~~~~~-----~~--------------~d~~k~-~~lG~~p~~~~l~e~l~~~~ 274 (286)
T 3gpi_A 229 DRQGIAYPAGATPPVQGN-----KK--------------LSNARL-LASGYQLIYPDYVSGYGALL 274 (286)
T ss_dssp HHTTCCCCCSCCCCBCSS-----CE--------------ECCHHH-HHTTCCCSSCSHHHHHHHHH
T ss_pred HHcCCCCCCCCCcccCCC-----eE--------------eeHHHH-HHcCCCCcCCcHHHHHHHHH
Confidence 999987665432111100 00 011233 37899998756777877733
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-31 Score=274.81 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=196.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|||||||||||++|+++|++.|++ |++++|...... .++++.+ . ...++.++.+|+++
T Consensus 14 ~~~vlVTGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~-~~~~~~~---------~------~~~~~~~~~~Dl~d 74 (335)
T 1rpn_A 14 TRSALVTGITGQDGAYLAKLLLEKGYR---VHGLVARRSSDT-RWRLREL---------G------IEGDIQYEDGDMAD 74 (335)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSSCC-CHHHHHT---------T------CGGGEEEEECCTTC
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCe---EEEEeCCCcccc-ccchhhc---------c------ccCceEEEECCCCC
Confidence 689999999999999999999999865 999999865422 1222211 0 12468999999998
Q ss_pred CCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCC-ceEEEEeCceeccCCc-
Q psy6053 182 DELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHL-ELFVHISTAYCHLQEK- 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~-k~~V~vST~~~~~~~~- 254 (614)
++ ++..++++ +|+|||+||..... ......+++|+.||.+++++|++. ++ ++|||+||.++++...
T Consensus 75 ~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~~v~g~~~~ 147 (335)
T 1rpn_A 75 AC------SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTSEMFGLIQA 147 (335)
T ss_dssp HH------HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCSCSS
T ss_pred HH------HHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeCHHHhCCCCC
Confidence 65 78888875 69999999987653 345678899999999999999995 65 8999999998876543
Q ss_pred -ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 255 -VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 -~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
+++|+..+.| .+.|+.||+.+|++++.+.. .+++++++||+.+||+...
T Consensus 148 ~~~~E~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~ 198 (335)
T 1rpn_A 148 ERQDENTPFYP-----------------------------RSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRG 198 (335)
T ss_dssp SSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred CCCCcccCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCC
Confidence 5566543322 26899999999999998876 5899999999999998653
Q ss_pred CCccccCCCCchHHHHHHHhcCcee-eEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIR-TMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~-~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
+ ++.. .....++..+..|... ..+++++..+++++|+|+|++++.++.++ .+++||++++ +++|+.|
T Consensus 199 ~--~~~~--~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~------~~~~~ni~~~--~~~s~~e 266 (335)
T 1rpn_A 199 I--EFVT--RKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD------KADDYVVATG--VTTTVRD 266 (335)
T ss_dssp T--TSHH--HHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSS------SCCCEEECCS--CEEEHHH
T ss_pred C--Ccch--HHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcC------CCCEEEEeCC--CCccHHH
Confidence 2 1100 0112344455566533 34678899999999999999999998753 2479999998 8899999
Q ss_pred HHHHHhhhccccc
Q psy6053 412 IIDIGKSIVTTEV 424 (614)
Q Consensus 412 ~~~~~~~~~g~~~ 424 (614)
+++.+.+.+|.+.
T Consensus 267 ~~~~i~~~~g~~~ 279 (335)
T 1rpn_A 267 MCQIAFEHVGLDY 279 (335)
T ss_dssp HHHHHHHTTTCCG
T ss_pred HHHHHHHHhCCCc
Confidence 9999999988753
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-31 Score=276.32 Aligned_cols=310 Identities=15% Similarity=0.098 Sum_probs=212.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC-cCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG-KNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~-~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+|||||||||||++++++|+++|++ |+++.|.... ....+++.+. ...++.++.+|+++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~~ 61 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHD---VIILDNLCNSKRSVLPVIERL----------------GGKHPTFVEGDIRN 61 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCTTHHHHHHHH----------------HTSCCEEEECCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCE---EEEEecCCCcchhHHHHHHhh----------------cCCcceEEEccCCC
Confidence 57999999999999999999999876 7888875432 2222222221 12467889999998
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
++ +++.+++ ++|+|||+||..... +.....+++|+.||.+++++|++. ++++|||+||.++++...
T Consensus 62 ~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~~~ 134 (338)
T 1udb_A 62 EA------LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDNPKI 134 (338)
T ss_dssp HH------HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCCSS
T ss_pred HH------HHHHHhhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEccHHHhCCCCCC
Confidence 65 6777776 499999999976543 234567899999999999999984 789999999998776432
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-C-CCCEEEeecceeecccCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-N-GMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~-glp~~IvRp~~I~g~~~~ 332 (614)
+++|+....| ..+.|+.||+.+|++++.+.. . +++++++||+++||+...
T Consensus 135 ~~~e~~~~~~----------------------------~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~ 186 (338)
T 1udb_A 135 PYVESFPTGT----------------------------PQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPS 186 (338)
T ss_dssp SBCTTSCCCC----------------------------CSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTT
T ss_pred CcCcccCCCC----------------------------CCChHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcc
Confidence 4455422111 126899999999999998765 3 799999999999998643
Q ss_pred CCccccCC--CCchHHHHHHHhc--CceeeEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 333 PLPGWTDN--INGPTGLLIGAGK--GVIRTMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 333 p~~gw~d~--~~g~~~~~~~~~~--g~~~~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
...|.... .......+..... +....+++ ++++.+++|||+|+|++++.++..... ...+++||++++
T Consensus 187 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~--~~~~~~yni~~~ 264 (338)
T 1udb_A 187 GDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAN--KPGVHIYNLGAG 264 (338)
T ss_dssp SSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT--CCEEEEEEESCS
T ss_pred cccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHHHHHHHHHHHHhhhhc--cCCCcEEEecCC
Confidence 33222111 1122333333333 22223333 467889999999999999998876421 012479999998
Q ss_pred CcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy6053 403 QEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKG 482 (614)
Q Consensus 403 ~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~ 482 (614)
+++|+.|+++.+.+.+|.+.|.......+... ... . .-.+.+.+.+||+|.. .+.+.+.+
T Consensus 265 --~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~---~~~-----------~--~d~~k~~~~lG~~p~~-~l~~~l~~- 324 (338)
T 1udb_A 265 --VGNSVLDVVNAFSKACGKPVNYHFAPRREGDL---PAY-----------W--ADASKADRELNWRVTR-TLDEMAQD- 324 (338)
T ss_dssp --CCEEHHHHHHHHHHHHTSCCCEEEECCCTTCC---SBC-----------C--BCCHHHHHHHCCCCCC-CHHHHHHH-
T ss_pred --CceeHHHHHHHHHHHhCCCCcceeCCCCCCch---hhh-----------h--cCHHHHHHHcCCCcCC-CHHHHHHH-
Confidence 88999999999999988765532111111100 000 0 0123445778999986 67777776
Q ss_pred Hhhhhhhh
Q psy6053 483 FEVFEYYA 490 (614)
Q Consensus 483 ~~~~~~f~ 490 (614)
.++||.
T Consensus 325 --~~~w~~ 330 (338)
T 1udb_A 325 --TWHWQS 330 (338)
T ss_dssp --HHHHHH
T ss_pred --HHHHHH
Confidence 445654
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=282.49 Aligned_cols=303 Identities=17% Similarity=0.177 Sum_probs=216.7
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+|||||||||||++|+++|++. |++ |++++|....... +++.++ . ...+++++.+|+++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~---V~~~~r~~~~~~~-~~~~~~---------~------~~~~~~~~~~Dl~d 61 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDT---VVNIDKLTYAGNL-ESLSDI---------S------ESNRYNFEHADICD 61 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCE---EEEEECCCTTCCG-GGGTTT---------T------TCTTEEEEECCTTC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCe---EEEEecCCCCCch-hhhhhh---------h------cCCCeEEEECCCCC
Confidence 57999999999999999999998 554 8999997532111 111100 0 12478999999998
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHc-CCCc-------eEEEEeCce
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEM-KHLE-------LFVHISTAY 248 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~-~~~k-------~~V~vST~~ 248 (614)
++ .+..+++ ++|+|||+||..... ......+++|+.||.+++++|.+. .+++ +|||+||.+
T Consensus 62 ~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~ 135 (361)
T 1kew_A 62 SA------EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE 135 (361)
T ss_dssp HH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG
T ss_pred HH------HHHHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHH
Confidence 65 7888887 899999999987643 345678999999999999999983 1666 999999987
Q ss_pred eccCCc------------ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CC
Q psy6053 249 CHLQEK------------VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NG 315 (614)
Q Consensus 249 ~~~~~~------------~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~g 315 (614)
+++... +++|+.... ..+.|+.||+.+|++++.+.. .|
T Consensus 136 v~g~~~~~~~~~~~~~~~~~~E~~~~~-----------------------------~~~~Y~~sK~~~e~~~~~~~~~~g 186 (361)
T 1kew_A 136 VYGDLPHPDEVENSVTLPLFTETTAYA-----------------------------PSSPYSASKASSDHLVRAWRRTYG 186 (361)
T ss_dssp GGCCCCCGGGSCTTSCCCCBCTTSCCC-----------------------------CCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCcccccccccccCCCCCCCCCCC-----------------------------CCCccHHHHHHHHHHHHHHHHHhC
Confidence 766432 344432211 137899999999999998766 58
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++++++||+.|||+...+. .....++..+..|....++++++...++++++|+|++++.++.... .++
T Consensus 187 i~~~~vrp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~ 254 (361)
T 1kew_A 187 LPTIVTNCSNNYGPYHFPE-------KLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK-----AGE 254 (361)
T ss_dssp CCEEEEEECEEESTTCCTT-------SHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTC
T ss_pred CcEEEEeeceeECCCCCcc-------cHHHHHHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCCC-----CCC
Confidence 9999999999999875320 1122355556666655567888899999999999999999886532 578
Q ss_pred EEEeccCCcccccHHHHHHHHhhhcccccCCCCc-----cccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCCh
Q psy6053 396 IVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGC-----VWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKP 470 (614)
Q Consensus 396 vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P 470 (614)
+||++++ .++++.|+++.+.+.+|.+.|...+ .+.+........+ ..-.+.+.+.+||+|
T Consensus 255 ~~~v~~~--~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~-------------~~d~~k~~~~lG~~p 319 (361)
T 1kew_A 255 TYNIGGH--NEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRY-------------AIDAGKISRELGWKP 319 (361)
T ss_dssp EEEECCC--CEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBC-------------CBCCHHHHHHHCCCC
T ss_pred EEEecCC--CeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCccccee-------------ecCHHHHHHHhCCCC
Confidence 9999998 8899999999999998876553211 1111100000000 011244567789999
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q psy6053 471 CLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 471 ~~~~l~~ki~~~~~~~~~f~ 490 (614)
.. .+.+.+.+ .++||.
T Consensus 320 ~~-~~~e~l~~---~~~~~~ 335 (361)
T 1kew_A 320 LE-TFESGIRK---TVEWYL 335 (361)
T ss_dssp SC-CHHHHHHH---HHHHHH
T ss_pred cc-CHHHHHHH---HHHHHH
Confidence 76 46777776 455554
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=274.57 Aligned_cols=296 Identities=16% Similarity=0.074 Sum_probs=209.9
Q ss_pred CcEEEEecccccccHHHHHHHHhh--CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRK--SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~--g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+|+|||||||||||++|+++|++. |++ |++++|...... + ..+++++.+|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~---V~~~~r~~~~~~----~--------------------~~~~~~~~~D~ 54 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTEN---VIASDIRKLNTD----V--------------------VNSGPFEVVNA 54 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGG---EEEEESCCCSCH----H--------------------HHSSCEEECCT
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCE---EEEEcCCCcccc----c--------------------cCCCceEEecC
Confidence 478999999999999999999998 776 899999765421 0 12456889999
Q ss_pred CCCCCCCCHHHHHHHhc--cccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-
Q psy6053 180 EADELAIKESDRQLLAS--EVDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK- 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~- 254 (614)
++++ ++..+++ ++|+|||+||..... ......+++|+.||.+++++|++ .++++|||+||.++++...
T Consensus 55 ~d~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~v~~SS~~~~~~~~~ 127 (312)
T 2yy7_A 55 LDFN------QIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKA-KKIKKIFWPSSIAVFGPTTP 127 (312)
T ss_dssp TCHH------HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHT-TSCSEEECCEEGGGCCTTSC
T ss_pred CCHH------HHHHHHhhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHH-cCCCEEEEeccHHHhCCCCC
Confidence 9865 7888887 899999999976532 44567899999999999999999 4889999999998876532
Q ss_pred --ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 255 --VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 --~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+++|+....| .+.|+.||+.+|++++.+.. .|++++++||+.|||+..
T Consensus 128 ~~~~~e~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~ 178 (312)
T 2yy7_A 128 KENTPQYTIMEP-----------------------------STVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWST 178 (312)
T ss_dssp SSSBCSSCBCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSS
T ss_pred CCCccccCcCCC-----------------------------CchhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCC
Confidence 4455432222 27899999999999988765 589999999999999876
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
.|-.+. .......+.....+.....+++++..+++++|+|+|++++.++.++... ...+++||+++ +++|+.|
T Consensus 179 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~~~~ni~~---~~~s~~e 251 (312)
T 2yy7_A 179 PPGGGT---TDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEK-IKIHSSYNLAA---MSFTPTE 251 (312)
T ss_dssp CCCSCT---TTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGGG-CCCSSCEECCS---EEECHHH
T ss_pred CCCCch---hhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCcccc-cccCceEEeCC---CccCHHH
Confidence 542211 0112233333333333345677888999999999999999998765420 00247999984 5799999
Q ss_pred HHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhH-HHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy6053 412 IIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIP-AYFLDAIIFLSGNKPCLVKIQDRINKGF 483 (614)
Q Consensus 412 ~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p-a~~~d~~~~~~G~~P~~~~l~~ki~~~~ 483 (614)
+++.+.+.+|. .++ .+.|.. + ..+ ....+ ..-.+.+.+.+||+|+. .+.+.+.+..
T Consensus 252 ~~~~i~~~~~~-~~i---~~~~~~-----~--~~~----~~~~~~~~d~~k~~~~lG~~p~~-~l~~~l~~~~ 308 (312)
T 2yy7_A 252 IANEIKKHIPE-FTI---TYEPDF-----R--QKI----ADSWPASIDDSQAREDWDWKHTF-DLESMTKDMI 308 (312)
T ss_dssp HHHHHHTTCTT-CEE---EECCCT-----H--HHH----HTTSCSSBCCHHHHHHHCCCCCC-CHHHHHHHHH
T ss_pred HHHHHHHHCCC-Cce---EeccCc-----c--ccc----cccccccCCHHHHHHHcCCCCCC-CHHHHHHHHH
Confidence 99999998772 111 122210 0 000 00000 11124456779999986 6777777643
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=274.65 Aligned_cols=292 Identities=17% Similarity=0.164 Sum_probs=212.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++++++|++.|++ |+++.|....... . ...++.++.+|++++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~~~~~~~---------------------~-~~~~~~~~~~Dl~~~ 55 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLE---VAVLDNLATGKRE---------------------N-VPKGVPFFRVDLRDK 55 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCE---EEEECCCSSCCGG---------------------G-SCTTCCEECCCTTCH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCE---EEEEECCCcCchh---------------------h-cccCeEEEECCCCCH
Confidence 57999999999999999999999876 8888885432110 0 123577899999986
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc-eeccC---C
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA-YCHLQ---E 253 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~-~~~~~---~ 253 (614)
+ +++++++ ++|+|||+||..... +.....+++|+.||.+++++|++. ++++|||+||. ++++. .
T Consensus 56 ~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~~g~~~~~ 128 (311)
T 2p5y_A 56 E------GVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVEKLVFASTGGAIYGEVPEG 128 (311)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEHHHHHCCCCTT
T ss_pred H------HHHHHHHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCChhhcCCCCCC
Confidence 5 7888777 799999999986643 345668899999999999999984 78999999998 66553 2
Q ss_pred cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 254 KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 254 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
.+++|+..+.| .+.|+.||+.+|++++.+.. .|++++++||+.|||+...
T Consensus 129 ~~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~ 179 (311)
T 2p5y_A 129 ERAEETWPPRP-----------------------------KSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQD 179 (311)
T ss_dssp CCBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCC
T ss_pred CCcCCCCCCCC-----------------------------CChHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCC
Confidence 25556533222 26899999999999988765 5899999999999999754
Q ss_pred CCccccCCCCc-hHHHHHHHhcCceeeEe-----eCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc
Q psy6053 333 PLPGWTDNING-PTGLLIGAGKGVIRTMF-----CDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ 406 (614)
Q Consensus 333 p~~gw~d~~~g-~~~~~~~~~~g~~~~~~-----~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~ 406 (614)
+.. ..+ ...++..+..|....++ ++++...++++++|+|++++.++.. .+++||++++ .+
T Consensus 180 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~-------~~~~~~i~~~--~~ 245 (311)
T 2p5y_A 180 PHG-----EAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFS-------LEGIYNVGTG--EG 245 (311)
T ss_dssp SSS-----TTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHH-------CCEEEEESCS--CC
T ss_pred CCC-----cCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhC-------CCCEEEeCCC--CC
Confidence 210 011 12344445566655556 7788899999999999999998864 2579999998 88
Q ss_pred ccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhh
Q psy6053 407 VSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVF 486 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~ 486 (614)
+|+.|+++.+.+.+|.+.+.. +.|......... ..-.+.+.+ +||+|.. .+.+.+.+ .+
T Consensus 246 ~s~~e~~~~i~~~~g~~~~~~---~~~~~~~~~~~~-------------~~d~~k~~~-lg~~p~~-~~~~~l~~---~~ 304 (311)
T 2p5y_A 246 HTTREVLMAVAEAAGKAPEVQ---PAPPRPGDLERS-------------VLSPLKLMA-HGWRPKV-GFQEGIRL---TV 304 (311)
T ss_dssp EEHHHHHHHHHHHHTCCCCEE---EECCCTTCCSBC-------------CBCCHHHHT-TTCCCSS-CHHHHHHH---HH
T ss_pred ccHHHHHHHHHHHhCCCCCce---eCCCCccchhhc-------------cCCHHHHHH-CCCCCCC-CHHHHHHH---HH
Confidence 999999999999988765432 122110000000 001234456 8999987 67778776 44
Q ss_pred hhhh
Q psy6053 487 EYYA 490 (614)
Q Consensus 487 ~~f~ 490 (614)
+||.
T Consensus 305 ~~~~ 308 (311)
T 2p5y_A 305 DHFR 308 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4553
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=276.70 Aligned_cols=292 Identities=11% Similarity=0.093 Sum_probs=207.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|||||||||||++|+++|++.|++ |+++.|.. .+|++
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~---v~~~~r~~------------------------------------~~D~~ 42 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDV---ELVLRTRD------------------------------------ELNLL 42 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTE---EEECCCTT------------------------------------TCCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCe---EEEEecCc------------------------------------cCCcc
Confidence 3689999999999999999999999875 77776641 26887
Q ss_pred CCCCCCCHHHHHHHhc--cccEEEEcccccCh----hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC-
Q psy6053 181 ADELAIKESDRQLLAS--EVDIMIHGAATIRF----DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE- 253 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~- 253 (614)
+++ ++..+++ ++|+|||+||.... ..+....+++|+.||.+++++|++. ++++|||+||.++++..
T Consensus 43 d~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~vyg~~~ 115 (321)
T 1e6u_A 43 DSR------AVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKLA 115 (321)
T ss_dssp CHH------HHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTTC
T ss_pred CHH------HHHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccHHHcCCCC
Confidence 754 7888888 89999999998752 3445678899999999999999994 88999999999887643
Q ss_pred -cccccccCCC-CCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 254 -KVLYEKPYPP-PTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 254 -~~i~E~~~~~-p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
.+++|+.... +..|. .+.|+.||+.+|++++.+.. .+++++++||+.|||+.
T Consensus 116 ~~~~~E~~~~~~~~~p~-------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~ 170 (321)
T 1e6u_A 116 KQPMAESELLQGTLEPT-------------------------NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPH 170 (321)
T ss_dssp CSSBCGGGTTSSCCCGG-------------------------GHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTT
T ss_pred CCCcCccccccCCCCCC-------------------------CCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcC
Confidence 2455543110 11110 14899999999999998765 58999999999999987
Q ss_pred CCCCccccCCCCch-HHHHHHHhc----C-ceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhc----CCCCccEEEec
Q psy6053 331 REPLPGWTDNINGP-TGLLIGAGK----G-VIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ----KEHRQSIVHLT 400 (614)
Q Consensus 331 ~~p~~gw~d~~~g~-~~~~~~~~~----g-~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~----~~~~~~vyni~ 400 (614)
..+... ..+. ..++..+.. | ....++++++..++++||+|+|++++.++.+.... ....+++||++
T Consensus 171 ~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~ 246 (321)
T 1e6u_A 171 DNFHPS----NSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVG 246 (321)
T ss_dssp CCCCTT----CSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEES
T ss_pred CCCCCC----CCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeC
Confidence 643211 1122 234444332 3 33445788899999999999999999998765420 00125799999
Q ss_pred cCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy6053 401 SSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRIN 480 (614)
Q Consensus 401 ~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~ 480 (614)
++ +++|+.|+++.+.+.+|.+.++. +.|......... ..-.+.+.+ +||+|.. .+.+.+.
T Consensus 247 ~~--~~~s~~e~~~~i~~~~g~~~~~~---~~~~~~~~~~~~-------------~~d~~k~~~-lG~~p~~-~~~~~l~ 306 (321)
T 1e6u_A 247 TG--VDCTIRELAQTIAKVVGYKGRVV---FDASKPDGTPRK-------------LLDVTRLHQ-LGWYHEI-SLEAGLA 306 (321)
T ss_dssp CS--CCEEHHHHHHHHHHHHTCCSEEE---EETTSCCCCSBC-------------CBCCHHHHH-TTCCCCC-CHHHHHH
T ss_pred CC--CCccHHHHHHHHHHHhCCCCceE---eCCCCCCCcccc-------------cCCHHHHHh-cCCccCC-cHHHHHH
Confidence 98 88999999999999988764432 122110000000 011234456 8999976 5667777
Q ss_pred HHHhhhhhhh
Q psy6053 481 KGFEVFEYYA 490 (614)
Q Consensus 481 ~~~~~~~~f~ 490 (614)
+ .++||.
T Consensus 307 ~---~~~~~~ 313 (321)
T 1e6u_A 307 S---TYQWFL 313 (321)
T ss_dssp H---HHHHHH
T ss_pred H---HHHHHH
Confidence 6 455554
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=283.43 Aligned_cols=292 Identities=14% Similarity=0.078 Sum_probs=208.4
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-HHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.+|+|||||||||+|++|+++|++.|++ |++++|....... .+. +.... ...+++++.+|+
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~------------~~~~~---~~~~~~~~~~Dl 67 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEE---VTVLDDLRVPPMIPPEG------------TGKFL---EKPVLELEERDL 67 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCC---EEEECCCSSCCSSCCTT------------SSEEE---CSCGGGCCHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCE---EEEEecCCcccccchhh------------hhhhc---cCCCeeEEeCcc
Confidence 4689999999999999999999999987 8999998652100 000 00000 112344444444
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
+ ++|+|||+||...... ......+ |+.||.+++++|++. ++++|||+||.++++...
T Consensus 68 ~----------------~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v~~~v~~SS~~v~~~~~~~ 129 (321)
T 3vps_A 68 S----------------DVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GVPKVVVGSTCEVYGQADTL 129 (321)
T ss_dssp T----------------TEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCSSS
T ss_pred c----------------cCCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CCCeEEEecCHHHhCCCCCC
Confidence 3 7999999999876432 2233556 999999999999995 799999999998876543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCC-CEEEeecceeecccCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGM-PCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~gl-p~~IvRp~~I~g~~~~ 332 (614)
+++|+....| .+.|+.||+.+|+++..+.. .|+ +++|+||+.|||+...
T Consensus 130 ~~~E~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~ 180 (321)
T 3vps_A 130 PTPEDSPLSP-----------------------------RSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGER 180 (321)
T ss_dssp SBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCC
T ss_pred CCCCCCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCC
Confidence 5666643333 27899999999999999887 689 9999999999998764
Q ss_pred CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
+ + .....++..+..|....++++++..+++++++|+|++++.++.+.. .+ +||++++ +++|+.|+
T Consensus 181 ~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~-----~g-~~~i~~~--~~~s~~e~ 245 (321)
T 3vps_A 181 P------D-ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPL-----PS-VVNFGSG--QSLSVNDV 245 (321)
T ss_dssp T------T-SHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCC-----CS-EEEESCS--CCEEHHHH
T ss_pred C------C-ChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCC-----CC-eEEecCC--CcccHHHH
Confidence 3 0 1233455666677666677889999999999999999999887643 45 9999999 88999999
Q ss_pred HHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHhhhhhhhc
Q psy6053 413 IDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKP-CLVKIQDRINKGFEVFEYYAN 491 (614)
Q Consensus 413 ~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P-~~~~l~~ki~~~~~~~~~f~~ 491 (614)
++.+. .+|.+.++.. .|......... ..-.+.+.+.+||+| .. .+.+.+.+ .++||..
T Consensus 246 ~~~i~-~~g~~~~~~~---~~~~~~~~~~~-------------~~d~~k~~~~lG~~p~~~-~~~~~l~~---~~~~~~~ 304 (321)
T 3vps_A 246 IRILQ-ATSPAAEVAR---KQPRPNEITEF-------------RADTALQTRQIGERSGGI-GIEEGIRL---TLEWWQS 304 (321)
T ss_dssp HHHHH-TTCTTCEEEE---ECCCTTCCSBC-------------CBCCHHHHHHHCCCSCCC-CHHHHHHH---HHHHHHT
T ss_pred HHHHH-HhCCCCcccc---CCCCCCCccee-------------eccHHHHHHHhCCCCCcC-CHHHHHHH---HHHHHHh
Confidence 99999 8888755431 11110000000 011244566789999 54 67777776 5667765
Q ss_pred ce
Q psy6053 492 NQ 493 (614)
Q Consensus 492 ~~ 493 (614)
+.
T Consensus 305 ~~ 306 (321)
T 3vps_A 305 RD 306 (321)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=271.33 Aligned_cols=299 Identities=19% Similarity=0.197 Sum_probs=212.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|||||||||||++|+++|++.|++ |++++|...+.. +.+.++ . ...++.++.+|+
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~--~~~~~~------------~---~~~~~~~~~~D~ 84 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGHE---VTVVDNFFTGRK--RNVEHW------------I---GHENFELINHDV 84 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCG--GGTGGG------------T---TCTTEEEEECCT
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCCE---EEEEeCCCccch--hhhhhh------------c---cCCceEEEeCcc
Confidence 56789999999999999999999999875 899999754321 001000 0 124689999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC--c
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE--K 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~--~ 254 (614)
.++. +.++|+|||+||..... ......+++|+.||.+++++|++. +. +|||+||.++++.. .
T Consensus 85 ~~~~-----------~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~~ 151 (343)
T 2b69_A 85 VEPL-----------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDPEVH 151 (343)
T ss_dssp TSCC-----------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSS
T ss_pred CChh-----------hcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC-cEEEECcHHHhCCCCCC
Confidence 9865 35799999999987642 345677899999999999999995 55 89999999877654 2
Q ss_pred ccccccCCC--CCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 255 VLYEKPYPP--PTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 ~i~E~~~~~--p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+++|+.+.. |.. ..+.|+.||+.+|+++..+.. .|++++++||+.|||+..
T Consensus 152 ~~~E~~~~~~~~~~--------------------------~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~ 205 (343)
T 2b69_A 152 PQSEDYWGHVNPIG--------------------------PRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRM 205 (343)
T ss_dssp SBCTTCCCBCCSSS--------------------------TTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred CCcccccccCCCCC--------------------------CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCC
Confidence 556653211 111 126799999999999988765 599999999999999875
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
.+..+ .....++..+..|....++++++..+++++|+|+|++++.++... .+++||++++ +++|+.|
T Consensus 206 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~------~~~~~~i~~~--~~~s~~e 272 (343)
T 2b69_A 206 HMNDG-----RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN------VSSPVNLGNP--EEHTILE 272 (343)
T ss_dssp CTTCC-----CHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS------CCSCEEESCC--CEEEHHH
T ss_pred CCCcc-----cHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcC------CCCeEEecCC--CCCcHHH
Confidence 43211 112345555666666566788899999999999999999887532 3579999998 8899999
Q ss_pred HHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 412 IIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 412 ~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
+++.+.+.+|.+.++. +.|......... ..-.+.+.+.+||+|.. .+.+.+.+ .++||.
T Consensus 273 ~~~~i~~~~g~~~~~~---~~p~~~~~~~~~-------------~~d~~k~~~~lG~~p~~-~l~e~l~~---~~~~~~ 331 (343)
T 2b69_A 273 FAQLIKNLVGSGSEIQ---FLSEAQDDPQKR-------------KPDIKKAKLMLGWEPVV-PLEEGLNK---AIHYFR 331 (343)
T ss_dssp HHHHHHHHHTCCCCEE---EECCCTTCCCCC-------------CBCCHHHHHHHCCCCCS-CHHHHHHH---HHHHHH
T ss_pred HHHHHHHHhCCCCCce---eCCCCCCCCcee-------------cCCHHHHHHHcCCCCCC-CHHHHHHH---HHHHHH
Confidence 9999999988764432 122110000000 00123456788999976 56777776 444553
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=293.42 Aligned_cols=325 Identities=17% Similarity=0.108 Sum_probs=223.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.+++|+|||||||||||++|+++|+++|++ |++++|...... ..++++.+ ...++.++.+
T Consensus 8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~l~~~----------------~~~~v~~v~~ 68 (699)
T 1z45_A 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYD---CVVADNLSNSTYDSVARLEVL----------------TKHHIPFYEV 68 (699)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCTHHHHHHHHH----------------HTSCCCEEEC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEECCCcchHHHHHHHhhc----------------cCCceEEEEc
Confidence 356899999999999999999999999865 899998764432 22223221 1246888999
Q ss_pred CCCCCCCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccC
Q psy6053 178 DAEADELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQ 252 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~ 252 (614)
|+++++ .+..+++ ++|+|||+||..... ......+++|+.||.+++++|++. ++++|||+||.++++.
T Consensus 69 Dl~d~~------~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~iV~~SS~~vyg~ 141 (699)
T 1z45_A 69 DLCDRK------GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGD 141 (699)
T ss_dssp CTTCHH------HHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCC
T ss_pred CCCCHH------HHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECcHHHhCC
Confidence 999865 7888887 799999999987643 234567899999999999999985 7899999999988764
Q ss_pred Cc------ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEeec
Q psy6053 253 EK------VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLRP 323 (614)
Q Consensus 253 ~~------~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvRp 323 (614)
.. +++|+....| .+.|+.||+.+|++++.+.. .+++++|+||
T Consensus 142 ~~~~~~~~~~~E~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~ 192 (699)
T 1z45_A 142 ATRFPNMIPIPEECPLGP-----------------------------TNPYGHTKYAIENILNDLYNSDKKSWKFAILRY 192 (699)
T ss_dssp GGGSTTCCSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEE
T ss_pred CccccccCCccccCCCCC-----------------------------CChHHHHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 32 3444322111 27899999999999988754 4899999999
Q ss_pred ceeecccCCCCccccCC--CCchHHHHHHHhcC--ceeeEee------CCCccccceeHHHHHHHHHHHHHhhhhc--CC
Q psy6053 324 SIIIPVWREPLPGWTDN--INGPTGLLIGAGKG--VIRTMFC------DNTGYADFLPVDITINGIFVAIWAYLSQ--KE 391 (614)
Q Consensus 324 ~~I~g~~~~p~~gw~d~--~~g~~~~~~~~~~g--~~~~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~--~~ 391 (614)
+.|||+....+.|-.+. .......+.....+ ....+++ +++..+++|||+|+|++++.++...... ..
T Consensus 193 ~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~ 272 (699)
T 1z45_A 193 FNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENE 272 (699)
T ss_dssp CEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTC
T ss_pred ccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhcccccc
Confidence 99999864332221110 11223344444433 2223344 5788999999999999999998754210 01
Q ss_pred CCccEEEeccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChH
Q psy6053 392 HRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPC 471 (614)
Q Consensus 392 ~~~~vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~ 471 (614)
..+++||++++ +++|+.|+++.+.+.+|.+.|... .|....... ....-.+.+.+.+||+|.
T Consensus 273 ~~~~~yni~~~--~~~s~~el~~~i~~~~g~~~~~~~---~~~~~~~~~-------------~~~~d~~ka~~~LG~~p~ 334 (699)
T 1z45_A 273 GLCREWNLGSG--KGSTVFEVYHAFCKASGIDLPYKV---TGRRAGDVL-------------NLTAKPDRAKRELKWQTE 334 (699)
T ss_dssp CEEEEEEESCS--CCEEHHHHHHHHHHHHTCCCCC------------CC-------------CCCBCCHHHHHHTCCCCC
T ss_pred CCceEEEECCC--CCCcHHHHHHHHHHHhCCCCCcee---cCCCCCccc-------------cccCCHHHHHHhcCCCCC
Confidence 23579999998 889999999999999898765431 111000000 000112345678999997
Q ss_pred HHHHHHHHHHHHhhhhhhhcceEEEechh
Q psy6053 472 LVKIQDRINKGFEVFEYYANNQWEFRNEY 500 (614)
Q Consensus 472 ~~~l~~ki~~~~~~~~~f~~~~w~f~~~n 500 (614)
. .+.+.+.+ .++||..+.+.|...+
T Consensus 335 ~-~l~egl~~---~~~w~~~~~~~~~~~~ 359 (699)
T 1z45_A 335 L-QVEDSCKD---LWKWTTENPFGYQLRG 359 (699)
T ss_dssp C-CHHHHHHH---HHHHHHHCTTCSCCTT
T ss_pred C-CHHHHHHH---HHHHHHhCCcchhhhh
Confidence 6 67788877 5567766666666654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-30 Score=266.88 Aligned_cols=256 Identities=16% Similarity=0.069 Sum_probs=194.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++++++|++.|++ |++++|....... ++++++. ...+++++.+|++
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~---V~~~~r~~~~~~~-~~~~~~~---------------~~~~~~~~~~Dl~ 62 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYE---VYGADRRSGEFAS-WRLKELG---------------IENDVKIIHMDLL 62 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECSCCSTTTT-HHHHHTT---------------CTTTEEECCCCTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEECCCccccc-ccHhhcc---------------ccCceeEEECCCC
Confidence 5789999999999999999999999876 8999998654321 2222210 1246889999999
Q ss_pred CCCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCC-ceEEEEeCceeccCCc
Q psy6053 181 ADELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHL-ELFVHISTAYCHLQEK 254 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~-k~~V~vST~~~~~~~~ 254 (614)
+++ ++.+++++ +|+|||+||..... +.+...+++|+.||.+++++|.++ ++ ++|||+||.++++...
T Consensus 63 d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~vyg~~~ 135 (345)
T 2z1m_A 63 EFS------NIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQASTSEMFGKVQ 135 (345)
T ss_dssp CHH------HHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEEGGGGCSCS
T ss_pred CHH------HHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEechhhcCCCC
Confidence 865 78888875 59999999987643 346678899999999999999986 65 8999999998776543
Q ss_pred --ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 255 --VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 --~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+++|+....| .+.|+.||+.+|++++.+.. .++++++.|+.+++|+..
T Consensus 136 ~~~~~e~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~ 186 (345)
T 2z1m_A 136 EIPQTEKTPFYP-----------------------------RSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLR 186 (345)
T ss_dssp SSSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred CCCCCccCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCC
Confidence 4555432222 26899999999999998876 589999999999999853
Q ss_pred CCCccccCCCCc--hHHHHHHHhcCce-eeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccccc
Q psy6053 332 EPLPGWTDNING--PTGLLIGAGKGVI-RTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVS 408 (614)
Q Consensus 332 ~p~~gw~d~~~g--~~~~~~~~~~g~~-~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it 408 (614)
. ++... ...++..+..|.. ....++++..+++++++|+|++++.++.+. .+++||++++ ++++
T Consensus 187 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~------~~~~~~i~~~--~~~s 252 (345)
T 2z1m_A 187 G------IEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQP------EPDDYVIATG--ETHT 252 (345)
T ss_dssp C------TTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSS------SCCCEEECCS--CCEE
T ss_pred C------CcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCC------CCceEEEeCC--CCcc
Confidence 2 22111 1123334445543 335677888999999999999999988643 3479999998 8899
Q ss_pred HHHHHHHHhhhcccccC
Q psy6053 409 WQEIIDIGKSIVTTEVP 425 (614)
Q Consensus 409 ~~e~~~~~~~~~g~~~p 425 (614)
+.|+++.+.+.+|.+.+
T Consensus 253 ~~e~~~~i~~~~g~~~~ 269 (345)
T 2z1m_A 253 VREFVEKAAKIAGFDIE 269 (345)
T ss_dssp HHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 99999999999887643
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=268.18 Aligned_cols=307 Identities=15% Similarity=0.182 Sum_probs=196.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|||||||||||++|+++|++.|++ |++++|+.........+.++ . ...+++++.+|+++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~---V~~~~r~~~~~~~~~~~~~~---------~------~~~~~~~~~~Dl~d 70 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYA---VNTTVRDPDNQKKVSHLLEL---------Q------ELGDLKIFRADLTD 70 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCE---EEEEESCTTCTTTTHHHHHH---------G------GGSCEEEEECCTTT
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE---EEEEEcCcchhhhHHHHHhc---------C------CCCcEEEEecCCCC
Confidence 689999999999999999999999976 88889975432111112111 0 12468899999999
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee-cc--CC---
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC-HL--QE--- 253 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~-~~--~~--- 253 (614)
++ ++..+++++|+|||+||...+. .+.+..+++|+.||.+++++|++.+++++|||+||..+ ++ ..
T Consensus 71 ~~------~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~ 144 (338)
T 2rh8_A 71 EL------SFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTG 144 (338)
T ss_dssp SS------SSHHHHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSC
T ss_pred hH------HHHHHHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCC
Confidence 87 6788889999999999976543 22344789999999999999999534899999999853 21 11
Q ss_pred cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCC-CchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 254 KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFP-NSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 254 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~p-n~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
.+++|+.+..+ ++ . .|. ..+ +.|+.||.++|+++.++.. .|++++++||+.|||+..
T Consensus 145 ~~~~E~~~~~~-~~--------------~---~~~---~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~ 203 (338)
T 2rh8_A 145 LVVDEKNWTDI-EF--------------L---TSA---KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSL 203 (338)
T ss_dssp CCCCTTTTTCC----------------------------CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCS
T ss_pred cccChhhccch-hh--------------c---ccc---CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence 14556532111 00 0 000 001 2699999999999988765 599999999999999975
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeC------CCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCD------NTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW 405 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~------~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~ 405 (614)
.+. .......+.....|... ..+. +....++++|+|+|++++.++.... ..+.||++++
T Consensus 204 ~~~------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~~~~~~~~~~--- 268 (338)
T 2rh8_A 204 TSD------VPSSIGLAMSLITGNEF-LINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKES-----ASGRYICCAA--- 268 (338)
T ss_dssp SSS------CCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTT-----CCEEEEECSE---
T ss_pred CCC------CCchHHHHHHHHcCCcc-ccccccccccccCcccEEEHHHHHHHHHHHHcCCC-----cCCcEEEecC---
Confidence 431 11111112122233211 0111 1123489999999999999886532 3457888654
Q ss_pred cccHHHHHHHHhhhccc-ccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy6053 406 QVSWQEIIDIGKSIVTT-EVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFE 484 (614)
Q Consensus 406 ~it~~e~~~~~~~~~g~-~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~ 484 (614)
.+|+.|+++.+.+..+. +.|.... ..+... .. ..-.+.+ +.+||+|+. .+.+.+.+
T Consensus 269 ~~s~~e~~~~l~~~~~~~~~~~~~~-~~~~~~----~~-------------~~d~~k~-~~lG~~p~~-~l~~gl~~--- 325 (338)
T 2rh8_A 269 NTSVPELAKFLSKRYPQYKVPTDFG-DFPPKS----KL-------------IISSEKL-VKEGFSFKY-GIEEIYDE--- 325 (338)
T ss_dssp EECHHHHHHHHHHHCTTSCCCCCCT-TSCSSC----SC-------------CCCCHHH-HHHTCCCSC-CHHHHHHH---
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCC-CCCcCc----ce-------------eechHHH-HHhCCCCCC-CHHHHHHH---
Confidence 58999999999987542 2222110 011000 00 0011233 568999987 78888877
Q ss_pred hhhhhhc
Q psy6053 485 VFEYYAN 491 (614)
Q Consensus 485 ~~~~f~~ 491 (614)
.++||..
T Consensus 326 ~~~~~~~ 332 (338)
T 2rh8_A 326 SVEYFKA 332 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4556643
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=270.44 Aligned_cols=244 Identities=17% Similarity=0.192 Sum_probs=189.4
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
+-++.+++|+|||||||||||++|+++|++.|++ |++++|....... . .. ...++.+
T Consensus 13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~------~-------------~~-~l~~v~~ 69 (330)
T 2pzm_A 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHE---ILVIDNFATGKRE------V-------------LP-PVAGLSV 69 (330)
T ss_dssp -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCE---EEEEECCSSSCGG------G-------------SC-SCTTEEE
T ss_pred CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCCccchh------h-------------hh-ccCCceE
Confidence 4456678899999999999999999999999865 8999996543210 0 00 2247899
Q ss_pred EeCCCCCCCCCCCHHHHHHHhc--cccEEEEcccccCh--hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceec
Q psy6053 175 ISGDAEADELAIKESDRQLLAS--EVDIMIHGAATIRF--DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCH 250 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~ 250 (614)
+.+|+++++ ++..+++ ++|+|||+||.... ...+. +++|+.||.+++++|.+. ++++|||+||.+++
T Consensus 70 ~~~Dl~d~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~ 140 (330)
T 2pzm_A 70 IEGSVTDAG------LLERAFDSFKPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKA-GVKRLLNFQTALCY 140 (330)
T ss_dssp EECCTTCHH------HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHH-TCSEEEEEEEGGGG
T ss_pred EEeeCCCHH------HHHHHHhhcCCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHc-CCCEEEEecCHHHh
Confidence 999999865 7888888 99999999998754 23333 899999999999999984 78999999999887
Q ss_pred cCCc----ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeeccee
Q psy6053 251 LQEK----VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSII 326 (614)
Q Consensus 251 ~~~~----~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I 326 (614)
+... +++|+. . ..+.|+.||+.+|++++.+ +++.+++||+++
T Consensus 141 ~~~~~~~~~~~E~~--~-----------------------------~~~~Y~~sK~~~e~~~~~~---~~~~~~iR~~~v 186 (330)
T 2pzm_A 141 GRPATVPIPIDSPT--A-----------------------------PFTSYGISKTAGEAFLMMS---DVPVVSLRLANV 186 (330)
T ss_dssp CSCSSSSBCTTCCC--C-----------------------------CCSHHHHHHHHHHHHHHTC---SSCEEEEEECEE
T ss_pred CCCccCCCCcCCCC--C-----------------------------CCChHHHHHHHHHHHHHHc---CCCEEEEeeeee
Confidence 6432 344432 1 1278999999999999887 799999999999
Q ss_pred ecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHH-HHHHHHHhhhhcCCCCccEEEeccCCcc
Q psy6053 327 IPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITIN-GIFVAIWAYLSQKEHRQSIVHLTSSQEW 405 (614)
Q Consensus 327 ~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~-aii~~~~~~~~~~~~~~~vyni~~~~~~ 405 (614)
||+... . .....++..+..|. ..++++. ..++++++|+|+ +++.++... . +++||++++ .
T Consensus 187 ~gp~~~-------~-~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~-----~-g~~~~v~~~--~ 247 (330)
T 2pzm_A 187 TGPRLA-------I-GPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSLQEGR-----P-TGVFNVSTG--E 247 (330)
T ss_dssp ECTTCC-------S-SHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHTSTTC-----C-CEEEEESCS--C
T ss_pred ECcCCC-------C-CHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHHhhcC-----C-CCEEEeCCC--C
Confidence 998631 0 11223444455554 3456666 889999999999 998887542 2 789999998 8
Q ss_pred cccHHHHHHHHhhhcccc
Q psy6053 406 QVSWQEIIDIGKSIVTTE 423 (614)
Q Consensus 406 ~it~~e~~~~~~~~~g~~ 423 (614)
++++.|+++.+.+.+|.+
T Consensus 248 ~~s~~e~~~~i~~~~g~~ 265 (330)
T 2pzm_A 248 GHSIKEVFDVVLDYVGAT 265 (330)
T ss_dssp CEEHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 899999999999998886
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=261.16 Aligned_cols=274 Identities=14% Similarity=0.043 Sum_probs=196.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||| ||+|++|+++|+++|++ |++++|+.... +.+ ...+++++.+|+++
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~---V~~~~r~~~~~---~~~-------------------~~~~~~~~~~D~~d 58 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWR---IIGTSRNPDQM---EAI-------------------RASGAEPLLWPGEE 58 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCE---EEEEESCGGGH---HHH-------------------HHTTEEEEESSSSC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCE---EEEEEcChhhh---hhH-------------------hhCCCeEEEecccc
Confidence 478999998 99999999999999876 99999975431 111 12468999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCceeccCCc--cccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHISTAYCHLQEK--VLYE 258 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~~~~~~~~--~i~E 258 (614)
.+ ++++|+|||+||......+ .+.+++++|++. .++++|||+||.++++... +++|
T Consensus 59 ~~-----------~~~~d~vi~~a~~~~~~~~----------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E 117 (286)
T 3ius_A 59 PS-----------LDGVTHLLISTAPDSGGDP----------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDE 117 (286)
T ss_dssp CC-----------CTTCCEEEECCCCBTTBCH----------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECT
T ss_pred cc-----------cCCCCEEEECCCccccccH----------HHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCC
Confidence 32 5789999999998765432 257889999884 3789999999998876543 5677
Q ss_pred ccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcccc
Q psy6053 259 KPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~ 338 (614)
+..+.|. +.|+.||+.+|+++.++ . +++++|+||+.|||+...++.
T Consensus 118 ~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~-~-~~~~~ilRp~~v~G~~~~~~~--- 163 (286)
T 3ius_A 118 TTPLTPT-----------------------------AARGRWRVMAEQQWQAV-P-NLPLHVFRLAGIYGPGRGPFS--- 163 (286)
T ss_dssp TSCCCCC-----------------------------SHHHHHHHHHHHHHHHS-T-TCCEEEEEECEEEBTTBSSST---
T ss_pred CCCCCCC-----------------------------CHHHHHHHHHHHHHHhh-c-CCCEEEEeccceECCCchHHH---
Confidence 6443332 78999999999999998 4 899999999999999764421
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhh
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKS 418 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~ 418 (614)
.+..|....+.+ ++..+++++++|+|++++.++.+.. .+++||++++ +++|+.|+++.+.+
T Consensus 164 -----------~~~~~~~~~~~~-~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~~~i~~~--~~~s~~e~~~~i~~ 224 (286)
T 3ius_A 164 -----------KLGKGGIRRIIK-PGQVFSRIHVEDIAQVLAASMARPD-----PGAVYNVCDD--EPVPPQDVIAYAAE 224 (286)
T ss_dssp -----------TSSSSCCCEEEC-TTCCBCEEEHHHHHHHHHHHHHSCC-----TTCEEEECCS--CCBCHHHHHHHHHH
T ss_pred -----------HHhcCCccccCC-CCcccceEEHHHHHHHHHHHHhCCC-----CCCEEEEeCC--CCccHHHHHHHHHH
Confidence 123454444444 4688999999999999999987654 5679999999 88999999999999
Q ss_pred hcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy6053 419 IVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGF 483 (614)
Q Consensus 419 ~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~ 483 (614)
.+|.+.|...+.+.+.. ...... ++..-...-.+.+.+.+||+|+...+.+.+.+..
T Consensus 225 ~~g~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l~~~~ 281 (286)
T 3ius_A 225 LQGLPLPPAVDFDKADL----TPMARS----FYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQ 281 (286)
T ss_dssp HHTCCCCCEEEGGGSCC----CHHHHH----TTSCCCEECCHHHHHTTCCCCSCSSHHHHHHHHH
T ss_pred HcCCCCCcccchhhhcc----ChhHHH----hhcCCceeehHHHHHHhCCCCCcCCHHHHHHHHH
Confidence 98987654321111100 000000 0000000113445677899998655666766643
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=264.97 Aligned_cols=289 Identities=15% Similarity=0.072 Sum_probs=181.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|||||||||||++|+++|+++|++ |++++|+... .+ ++.+|+++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~----------------------------~~--~~~~Dl~d 48 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWH---AVGCGFRRAR----------------------------PK--FEQVNLLD 48 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCE---EEEEC---------------------------------------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCe---EEEEccCCCC----------------------------CC--eEEecCCC
Confidence 589999999999999999999999865 8999986421 12 57799998
Q ss_pred CCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC-cc
Q psy6053 182 DELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE-KV 255 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~-~~ 255 (614)
++ ++..++++ +|+|||+||..... .+....+++|+.||.+++++|.+. +. +|||+||.++++.. .+
T Consensus 49 ~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~~~~~~~ 120 (315)
T 2ydy_A 49 SN------AVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-GA-FLIYISSDYVFDGTNPP 120 (315)
T ss_dssp ---------CHHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSSSCS
T ss_pred HH------HHHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchHHHcCCCCCC
Confidence 76 67777764 89999999976542 455678899999999999999995 55 99999999887652 25
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
++|+..+.| .+.|+.||+.+|++++.+ +++++++||+.|||+...+..
T Consensus 121 ~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~---~~~~~~lR~~~v~G~~~~~~~ 168 (315)
T 2ydy_A 121 YREEDIPAP-----------------------------LNLYGKTKLDGEKAVLEN---NLGAAVLRIPILYGEVEKLEE 168 (315)
T ss_dssp BCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHH---CTTCEEEEECSEECSCSSGGG
T ss_pred CCCCCCCCC-----------------------------cCHHHHHHHHHHHHHHHh---CCCeEEEeeeeeeCCCCcccc
Confidence 566533322 278999999999999988 678899999999998765321
Q ss_pred cccCCCCchHHHHHHHh-cCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAG-KGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~-~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
++.. .++..+. .|....+ .++...++++++|+|++++.++.+.... ...+++||++++ +++|+.|+++
T Consensus 169 ~~~~------~~~~~~~~~~~~~~~--~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~~~~~i~~~--~~~s~~e~~~ 237 (315)
T 2ydy_A 169 SAVT------VMFDKVQFSNKSANM--DHWQQRFPTHVKDVATVCRQLAEKRMLD-PSIKGTFHWSGN--EQMTKYEMAC 237 (315)
T ss_dssp STTG------GGHHHHHCCSSCEEE--ECSSBBCCEEHHHHHHHHHHHHHHHHTC-TTCCEEEECCCS--CCBCHHHHHH
T ss_pred cHHH------HHHHHHHhcCCCeee--ccCceECcEEHHHHHHHHHHHHHhhccc-cCCCCeEEEcCC--CcccHHHHHH
Confidence 2111 1333334 4543333 3467889999999999999988764100 125789999998 8899999999
Q ss_pred HHhhhcccccCCCCccc-cCC-cccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcc
Q psy6053 415 IGKSIVTTEVPLNGCVW-YPG-GSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANN 492 (614)
Q Consensus 415 ~~~~~~g~~~p~~~~~~-~p~-~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~ 492 (614)
.+.+.+|.+.+...+.. .|. ....... ...-.+.+.++ ||+|... +.+.+.+ .++||..+
T Consensus 238 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~d~~k~~~~-G~~p~~~-~~~~l~~---~~~~~~~~ 299 (315)
T 2ydy_A 238 AIADAFNLPSSHLRPITDSPVLGAQRPRN-------------AQLDCSKLETL-GIGQRTP-FRIGIKE---SLWPFLID 299 (315)
T ss_dssp HHHHHTTCCCTTEEEECSCCCSSSCCCSB-------------CCBCCHHHHHT-TCCCCCC-HHHHHHH---HHGGGCC-
T ss_pred HHHHHhCCChhheeccccccccccCCCcc-------------cccchHHHHhc-CCCCCCC-HHHHHHH---HHHHHccc
Confidence 99999887644111111 111 0000000 00112344556 9998873 7778776 55666544
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=258.20 Aligned_cols=231 Identities=19% Similarity=0.189 Sum_probs=180.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||+|++|+++|+ +|++ |++++|... .+.+|++++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~---V~~~~r~~~---------------------------------~~~~D~~d~ 43 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGN---LIALDVHSK---------------------------------EFCGDFSNP 43 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSE---EEEECTTCS---------------------------------SSCCCTTCH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCe---EEEeccccc---------------------------------cccccCCCH
Confidence 579999999999999999999 7765 899998641 246899876
Q ss_pred CCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 183 ELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
+ ++.+++++ +|+|||+||..... ......+++|+.||.+++++|++. ++ +|||+||.++++... +
T Consensus 44 ~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~vy~~~~~~~ 115 (299)
T 1n2s_A 44 K------GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-GA-WVVHYSTDYVFPGTGDIP 115 (299)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-TC-EEEEEEEGGGSCCCTTCC
T ss_pred H------HHHHHHHhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEecccEEeCCCCCC
Confidence 5 78888876 99999999987643 345678899999999999999985 66 799999998776543 5
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
++|+..+.| .+.|+.||+.+|++++.+ +.+++++||+.|||+...
T Consensus 116 ~~E~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~---~~~~~ilRp~~v~G~~~~--- 160 (299)
T 1n2s_A 116 WQETDATSP-----------------------------LNVYGKTKLAGEKALQDN---CPKHLIFRTSWVYAGKGN--- 160 (299)
T ss_dssp BCTTSCCCC-----------------------------SSHHHHHHHHHHHHHHHH---CSSEEEEEECSEECSSSC---
T ss_pred CCCCCCCCC-----------------------------ccHHHHHHHHHHHHHHHh---CCCeEEEeeeeecCCCcC---
Confidence 566533222 278999999999999988 449999999999998642
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
.....++..+..|......+ +...++++++|+|++++.++.+.... ...+++||++++ +++|+.|+++.
T Consensus 161 ------~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~~~-~~~~~~~~i~~~--~~~s~~e~~~~ 229 (299)
T 1n2s_A 161 ------NFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALNK-PEVAGLYHLVAG--GTTTWHDYAAL 229 (299)
T ss_dssp ------CHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHHC-GGGCEEEECCCB--SCEEHHHHHHH
T ss_pred ------cHHHHHHHHHhcCCCEEeec--CcccCCeeHHHHHHHHHHHHHHhccc-cccCceEEEeCC--CCCCHHHHHHH
Confidence 11223444555565444444 47899999999999999998875310 003689999998 88999999999
Q ss_pred Hhhhccccc
Q psy6053 416 GKSIVTTEV 424 (614)
Q Consensus 416 ~~~~~g~~~ 424 (614)
+.+.+|.+.
T Consensus 230 i~~~~g~~~ 238 (299)
T 1n2s_A 230 VFDEARKAG 238 (299)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhCCCc
Confidence 999988763
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=258.41 Aligned_cols=290 Identities=17% Similarity=0.100 Sum_probs=204.6
Q ss_pred EEEEecccccccHHHHHHHHhh--CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRK--SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~--g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|||||||||||++|+++|++. |++ |+++.|..... .++.++.+|+++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~---V~~~~r~~~~~---------------------------~~~~~~~~D~~d 50 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKN---VIASDIVQRDT---------------------------GGIKFITLDVSN 50 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGG---EEEEESSCCCC---------------------------TTCCEEECCTTC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCE---EEEecCCCccc---------------------------cCceEEEecCCC
Confidence 4899999999999999999998 666 88998875431 135678999998
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccCh--hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc---
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRF--DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--- 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--- 254 (614)
++ ++..+++ ++|+|||+||.... .......+++|+.||.+++++|++. ++++|||+||.++++...
T Consensus 51 ~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~ 123 (317)
T 3ajr_A 51 RD------EIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RVEKVVIPSTIGVFGPETPKN 123 (317)
T ss_dssp HH------HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCTTSCSS
T ss_pred HH------HHHHHHhhcCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CCCEEEEecCHHHhCCCCCCC
Confidence 65 7888887 89999999997643 2345678899999999999999994 889999999998876532
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+.+|+..+.| .+.|+.||+.+|+++..+.. .|++++++||+.+||+...|
T Consensus 124 ~~~e~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~ 174 (317)
T 3ajr_A 124 KVPSITITRP-----------------------------RTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEP 174 (317)
T ss_dssp SBCSSSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCC
T ss_pred CccccccCCC-----------------------------CchHHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCC
Confidence 3444432222 27899999999999988765 68999999999999987654
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
..++. ......+.....+.....+++++..+++++|+|+|++++.++.++... ...+++||+++ .++|+.|++
T Consensus 175 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~-~~~g~~~~i~~---~~~s~~e~~ 247 (317)
T 3ajr_A 175 TAGTT---DYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDK-LVLRNGYNVTA---YTFTPSELY 247 (317)
T ss_dssp CSCSS---THHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGG-CSSCSCEECCS---EEECHHHHH
T ss_pred CCcch---hHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCccc-cccCceEecCC---ccccHHHHH
Confidence 32211 112233333333333344567888999999999999999988765320 01247999985 369999999
Q ss_pred HHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhH-HHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy6053 414 DIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIP-AYFLDAIIFLSGNKPCLVKIQDRINKG 482 (614)
Q Consensus 414 ~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p-a~~~d~~~~~~G~~P~~~~l~~ki~~~ 482 (614)
+.+.+.+|. .++ .+.|. .... +....+ ..-.+.+.+.+||+|.. .+.+.+.+.
T Consensus 248 ~~i~~~~~~-~~i---~~~~~-------~~~~----~~~~~~~~~d~~k~~~~lG~~p~~-~~~~~l~~~ 301 (317)
T 3ajr_A 248 SKIKERIPE-FEI---EYKED-------FRDK----IAATWPESLDSSEASNEWGFSIEY-DLDRTIDDM 301 (317)
T ss_dssp HHHHTTCCS-CCE---EECCC-------HHHH----HHTTSCSCBCCHHHHHHHCCCCCC-CHHHHHHHH
T ss_pred HHHHHHCCc-ccc---ccccc-------cchh----hccccccccCHHHHHHHcCCCCCC-CHHHHHHHH
Confidence 999998662 111 11221 0000 000011 01124456778999986 667777763
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=264.08 Aligned_cols=262 Identities=15% Similarity=0.066 Sum_probs=193.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.|++ |++++|...... .++++++.. ... .. ...+++++.+|++++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~-~~~~~~l~~-----~~~---~~-~~~~~~~~~~Dl~d~ 91 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYE---VHGIVRRSSSFN-TGRIEHLYK-----NPQ---AH-IEGNMKLHYGDLTDS 91 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSSCC-CTTTGGGC------------------CEEEEECCTTCH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCE---EEEEECCccccc-hhhHHHHhh-----hhc---cc-cCCCceEEEccCCCH
Confidence 68999999999999999999999865 899999764311 011111000 000 00 014688999999986
Q ss_pred CCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCC---ceEEEEeCceeccCCc
Q psy6053 183 ELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHL---ELFVHISTAYCHLQEK 254 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~---k~~V~vST~~~~~~~~ 254 (614)
+ ++..++++ +|+|||+||..... +.....+++|+.||.+++++|.+. ++ ++|||+||.++++...
T Consensus 92 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS~~~~~~~~ 164 (375)
T 1t2a_A 92 T------CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQASTSELYGKVQ 164 (375)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGTCSCS
T ss_pred H------HHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecchhhhCCCC
Confidence 5 78888875 69999999987653 345678899999999999999994 66 7999999998876433
Q ss_pred --ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 255 --VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 --~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+++|+..+.| .+.|+.||+.+|++++.+.. .+++++++||+.+||+..
T Consensus 165 ~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~ 215 (375)
T 1t2a_A 165 EIPQKETTPFYP-----------------------------RSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 215 (375)
T ss_dssp SSSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCccCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCC
Confidence 5566533222 26899999999999998876 589999999999999864
Q ss_pred CCCccccCCCCchHHHHHHHhcCce-eeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVI-RTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~-~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
.+ ++... ....++..+..|.. ...+++++..+++++|+|+|++++.++.+. ..++||++++ +++|+.
T Consensus 216 ~~--~~~~~--~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~------~~~~~ni~~~--~~~s~~ 283 (375)
T 1t2a_A 216 GA--NFVTR--KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND------EPEDFVIATG--EVHSVR 283 (375)
T ss_dssp CT--TSHHH--HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSS------SCCCEEECCS--CCEEHH
T ss_pred CC--CcchH--HHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcC------CCceEEEeCC--CcccHH
Confidence 32 11100 01233444455643 245678899999999999999999988653 2479999998 889999
Q ss_pred HHHHHHhhhcccccC
Q psy6053 411 EIIDIGKSIVTTEVP 425 (614)
Q Consensus 411 e~~~~~~~~~g~~~p 425 (614)
|+++.+.+.+|.+.+
T Consensus 284 e~~~~i~~~~g~~~~ 298 (375)
T 1t2a_A 284 EFVEKSFLHIGKTIV 298 (375)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 999999999887643
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=287.50 Aligned_cols=268 Identities=13% Similarity=0.110 Sum_probs=198.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..++|+|||||||||||++|+++|++. |++ |++++|+..... + +. ...+++++.|
T Consensus 312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~---V~~~~r~~~~~~---~------------~~------~~~~v~~v~~ 367 (660)
T 1z7e_A 312 ARRRTRVLILGVNGFIGNHLTERLLREDHYE---VYGLDIGSDAIS---R------------FL------NHPHFHFVEG 367 (660)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHHHSSSEE---EEEEESCCTTTG---G------------GT------TCTTEEEEEC
T ss_pred hccCceEEEEcCCcHHHHHHHHHHHhcCCCE---EEEEEcCchhhh---h------------hc------cCCceEEEEC
Confidence 356899999999999999999999998 654 999999764321 0 00 1247899999
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK 254 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~ 254 (614)
|++++. +.++.+++++|+|||+||.... ..+....+++|+.||.+++++|++. + ++|||+||.++++...
T Consensus 368 Dl~d~~-----~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~-~r~V~~SS~~vyg~~~ 440 (660)
T 1z7e_A 368 DISIHS-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMCS 440 (660)
T ss_dssp CTTTCH-----HHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTCC
T ss_pred CCCCcH-----HHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C-CEEEEEecHHHcCCCC
Confidence 999864 2367778899999999998763 3456678899999999999999995 6 8999999998776532
Q ss_pred --ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 255 --VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 --~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
+++|+....+..+ .....+.|+.||+.+|++++.+.. .|++++++||+.|||+..
T Consensus 441 ~~~~~E~~~~~~~~p----------------------~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~ 498 (660)
T 1z7e_A 441 DKYFDEDHSNLIVGP----------------------VNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL 498 (660)
T ss_dssp SSSBCTTTCCEEECC----------------------TTCTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTS
T ss_pred CcccCCCccccccCc----------------------ccCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCc
Confidence 4555532100000 001125799999999999988765 599999999999999976
Q ss_pred CCCccccCCCC-chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc-cccH
Q psy6053 332 EPLPGWTDNIN-GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW-QVSW 409 (614)
Q Consensus 332 ~p~~gw~d~~~-g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~-~it~ 409 (614)
.+..++.-+.. ....++..+..|....++++++..+++++|+|+|++++.++..... ...+++||++++ + ++|+
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~--~~~g~~~ni~~~--~~~~s~ 574 (660)
T 1z7e_A 499 DNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN--RCDGEIINIGNP--ENEASI 574 (660)
T ss_dssp SCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGG--TTTTEEEEECCG--GGEEEH
T ss_pred cccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccc--cCCCeEEEECCC--CCCcCH
Confidence 43211110111 1234556666776666677888999999999999999999876531 015689999987 6 7999
Q ss_pred HHHHHHHhhhcccc
Q psy6053 410 QEIIDIGKSIVTTE 423 (614)
Q Consensus 410 ~e~~~~~~~~~g~~ 423 (614)
.|+++.+.+.+|.+
T Consensus 575 ~el~~~i~~~~g~~ 588 (660)
T 1z7e_A 575 EELGEMLLASFEKH 588 (660)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988865
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=255.33 Aligned_cols=224 Identities=21% Similarity=0.182 Sum_probs=180.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++++++|+++|++ |++++|. .+|++++
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~r~-------------------------------------~~D~~d~ 45 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYD---IYPFDKK-------------------------------------LLDITNI 45 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEE---EEEECTT-------------------------------------TSCTTCH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCE---EEEeccc-------------------------------------ccCCCCH
Confidence 48999999999999999999999865 8999982 2677775
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC--cc
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE--KV 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~--~~ 255 (614)
+ .+..+++ ++|+|||+||...... .....+++|+.||.+++++|++. ++ +|||+||.++++.. .+
T Consensus 46 ~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~SS~~vy~~~~~~~ 117 (287)
T 3sc6_A 46 S------QVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-GA-KLVYISTDYVFQGDRPEG 117 (287)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCCCCSSC
T ss_pred H------HHHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchhhhcCCCCCCC
Confidence 4 7888877 6999999999887543 56778999999999999999995 66 69999999877654 36
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
++|+..+.|. +.|+.||+.+|++++.+ +.+++++||+.|||+....
T Consensus 118 ~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~---~~~~~ilR~~~v~G~~~~~-- 163 (287)
T 3sc6_A 118 YDEFHNPAPI-----------------------------NIYGASKYAGEQFVKEL---HNKYFIVRTSWLYGKYGNN-- 163 (287)
T ss_dssp BCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHH---CSSEEEEEECSEECSSSCC--
T ss_pred CCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHh---CCCcEEEeeeeecCCCCCc--
Confidence 6776444332 78999999999999998 4588999999999986421
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
....++..+..|....+.+ +...++++++|+|++++.++.++ .+++||++++ +++|+.|+++.
T Consensus 164 -------~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~------~~~~~~i~~~--~~~s~~e~~~~ 226 (287)
T 3sc6_A 164 -------FVKTMIRLGKEREEISVVA--DQIGSPTYVADLNVMINKLIHTS------LYGTYHVSNT--GSCSWFEFAKK 226 (287)
T ss_dssp -------HHHHHHHHHTTCSEEEEEC--SCEECCEEHHHHHHHHHHHHTSC------CCEEEECCCB--SCEEHHHHHHH
T ss_pred -------HHHHHHHHHHcCCCeEeec--CcccCceEHHHHHHHHHHHHhCC------CCCeEEEcCC--CcccHHHHHHH
Confidence 1223444555565544444 48899999999999999988653 2679999999 88999999999
Q ss_pred HhhhcccccC
Q psy6053 416 GKSIVTTEVP 425 (614)
Q Consensus 416 ~~~~~g~~~p 425 (614)
+.+.+|.+.+
T Consensus 227 i~~~~g~~~~ 236 (287)
T 3sc6_A 227 IFSYANMKVN 236 (287)
T ss_dssp HHHHHTCCCE
T ss_pred HHHHcCCCcc
Confidence 9999887643
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=262.56 Aligned_cols=245 Identities=19% Similarity=0.205 Sum_probs=183.4
Q ss_pred cccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEE
Q psy6053 94 DRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVL 173 (614)
Q Consensus 94 ~~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~ 173 (614)
.+....+++|+|||||||||||++|+++|++.|++ |++++|...... +. + . ...+++
T Consensus 13 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~--~~------------l-----~-~~~~~~ 69 (333)
T 2q1w_A 13 GLVPRGSHMKKVFITGICGQIGSHIAELLLERGDK---VVGIDNFATGRR--EH------------L-----K-DHPNLT 69 (333)
T ss_dssp --------CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCG--GG------------S-----C-CCTTEE
T ss_pred ceeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCE---EEEEECCCccch--hh------------H-----h-hcCCce
Confidence 34455577899999999999999999999999865 999999754321 00 0 0 114789
Q ss_pred EEeCCCCCCCCCCCHHHHHHHhcc--ccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 174 PISGDAEADELAIKESDRQLLASE--VDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 174 ~v~gDl~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
++.+|+++++ .++.++++ +|+|||+||..... .... +++|+.||.+++++|.+ .++++|||+||.++
T Consensus 70 ~~~~Dl~d~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~-~~~~~iV~~SS~~~ 140 (333)
T 2q1w_A 70 FVEGSIADHA------LVNQLIGDLQPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKK-NNVGRFVYFQTALC 140 (333)
T ss_dssp EEECCTTCHH------HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHH-TTCSEEEEEEEGGG
T ss_pred EEEEeCCCHH------HHHHHHhccCCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHH-hCCCEEEEECcHHH
Confidence 9999999865 78888887 99999999986541 2223 89999999999999999 48899999999987
Q ss_pred cc----CCc-ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH-HhhCCCCEEEeec
Q psy6053 250 HL----QEK-VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE-AMNNGMPCLMLRP 323 (614)
Q Consensus 250 ~~----~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~-~~~~glp~~IvRp 323 (614)
++ ... +++|+. .| ..+.|+.||+.+|++++. +. +++++||
T Consensus 141 ~g~~~~~~~~~~~E~~--~p----------------------------~~~~Y~~sK~~~E~~~~~s~~----~~~ilR~ 186 (333)
T 2q1w_A 141 YGVKPIQQPVRLDHPR--NP----------------------------ANSSYAISKSANEDYLEYSGL----DFVTFRL 186 (333)
T ss_dssp GCSCCCSSSBCTTSCC--CC----------------------------TTCHHHHHHHHHHHHHHHHTC----CEEEEEE
T ss_pred hCCCcccCCCCcCCCC--CC----------------------------CCCchHHHHHHHHHHHHhhhC----CeEEEee
Confidence 75 221 334431 00 116899999999999998 63 8999999
Q ss_pred ceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 324 SIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 324 ~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
+.+||+... . .....++..+..|. .+++ ++...++++++|+|++++.++... .+++||++++
T Consensus 187 ~~v~gp~~~--~------~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai~~~~~~~------~g~~~~v~~~- 248 (333)
T 2q1w_A 187 ANVVGPRNV--S------GPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARATVRAVDGV------GHGAYHFSSG- 248 (333)
T ss_dssp SEEESTTCC--S------SHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHHHHHHTTC------CCEEEECSCS-
T ss_pred ceEECcCCc--C------cHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHHHHHHhcC------CCCEEEeCCC-
Confidence 999998621 0 11223445555665 3445 677899999999999999888542 2789999998
Q ss_pred cccccHHHHHHHHhhhcccc
Q psy6053 404 EWQVSWQEIIDIGKSIVTTE 423 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~ 423 (614)
.++++.|+++.+.+.+|.+
T Consensus 249 -~~~s~~e~~~~i~~~~g~~ 267 (333)
T 2q1w_A 249 -TDVAIKELYDAVVEAMALP 267 (333)
T ss_dssp -CCEEHHHHHHHHHHHTTCS
T ss_pred -CCccHHHHHHHHHHHhCCC
Confidence 8899999999999998876
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=262.60 Aligned_cols=258 Identities=16% Similarity=0.156 Sum_probs=172.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc-cCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR-QKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR-~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
||+|||||||||||++++++|+++|++ |++++| +.......+.+.+ .+. ...++.++.||++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~Dl~ 63 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYS---VNTTIRADPERKRDVSFLTN-------------LPG-ASEKLHFFNADLS 63 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEECCCC----CCCHHHHT-------------STT-HHHHEEECCCCTT
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCE---EEEEEeCCccchhHHHHHHh-------------hhc-cCCceEEEecCCC
Confidence 579999999999999999999999876 888888 4321000011110 000 1136889999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhH--HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC----c
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDE--ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE----K 254 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~--~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~----~ 254 (614)
+++ +++.+++++|+|||+|+.+.+.. +.+..+++|+.||.+++++|.+..++++|||+||.++.... .
T Consensus 64 d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~ 137 (322)
T 2p4h_X 64 NPD------SFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKD 137 (322)
T ss_dssp CGG------GGHHHHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCS
T ss_pred CHH------HHHHHHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCe
Confidence 976 78889999999999998764432 23458899999999999999985368999999998643211 2
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCC-chhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPN-SYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn-~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
+++|+..+. .+......| ++ .|+.||+++|+++.++.. .|++++++||+.|||+...
T Consensus 138 ~~~e~~~~~---------------~~~~~~~~p------~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~ 196 (322)
T 2p4h_X 138 VLDESDWSD---------------VDLLRSVKP------FGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVC 196 (322)
T ss_dssp EECTTCCCC---------------HHHHHHHCC------TTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCS
T ss_pred ecCCccccc---------------hhhhcccCc------ccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCC
Confidence 344442110 000000011 12 699999999999998775 6999999999999998653
Q ss_pred CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
+. .......+.....|....+ +. ...++++++|+|++++.++.... ..+.|| +++ .++|+.|+
T Consensus 197 ~~------~~~~~~~~~~~~~g~~~~~-~~--~~~~~i~v~Dva~a~~~~~~~~~-----~~g~~~-~~~--~~~s~~e~ 259 (322)
T 2p4h_X 197 PK------LPDSIEKALVLVLGKKEQI-GV--TRFHMVHVDDVARAHIYLLENSV-----PGGRYN-CSP--FIVPIEEM 259 (322)
T ss_dssp SS------CCHHHHHHTHHHHSCGGGC-CE--EEEEEEEHHHHHHHHHHHHHSCC-----CCEEEE-CCC--EEEEHHHH
T ss_pred CC------CCchHHHHHHHHhCCCccC-cC--CCcCEEEHHHHHHHHHHHhhCcC-----CCCCEE-EcC--CCCCHHHH
Confidence 21 1111111212233332211 12 33489999999999999886532 233598 555 67999999
Q ss_pred HHHHhhhc
Q psy6053 413 IDIGKSIV 420 (614)
Q Consensus 413 ~~~~~~~~ 420 (614)
++.+.+..
T Consensus 260 ~~~i~~~~ 267 (322)
T 2p4h_X 260 SQLLSAKY 267 (322)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998874
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=265.82 Aligned_cols=262 Identities=15% Similarity=0.103 Sum_probs=190.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|||||||||||++++++|++.|++ |++++|...... .++++++... ... ...++.++.+|+++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~-~~~~~~~~~~---------~~~-~~~~~~~~~~Dl~d 66 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYE---VHGIKRRASSFN-TERVDHIYQD---------PHT-CNPKFHLHYGDLSD 66 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECC--------------------------------CCEEECCCCSSC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE---EEEEECCCcccc-hHHHHHHhhc---------ccc-CCCceEEEECCCCC
Confidence 478999999999999999999999865 899999754311 1223222110 000 12478899999998
Q ss_pred CCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCC---ceEEEEeCceeccCC
Q psy6053 182 DELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHL---ELFVHISTAYCHLQE 253 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~---k~~V~vST~~~~~~~ 253 (614)
++ ++..++++ +|+|||+||..... +.....+++|+.||.+++++|++. ++ ++|||+||.++++..
T Consensus 67 ~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS~~v~g~~ 139 (372)
T 1db3_A 67 TS------NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQASTSELYGLV 139 (372)
T ss_dssp HH------HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGGTTC
T ss_pred HH------HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCChhhhCCC
Confidence 65 78888775 69999999976532 345667899999999999999994 66 799999999877654
Q ss_pred c--ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 254 K--VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 254 ~--~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
. +++|+....| .+.|+.||+.+|++++.+.. .+++++++||+.+||+.
T Consensus 140 ~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~ 190 (372)
T 1db3_A 140 QEIPQKETTPFYP-----------------------------RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPR 190 (372)
T ss_dssp CSSSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred CCCCCCccCCCCC-----------------------------CChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCC
Confidence 3 5556533222 27899999999999998876 58999999999999986
Q ss_pred CCCCccccCCCCchHHHHHHHhcCce-eeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccH
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVI-RTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSW 409 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~-~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~ 409 (614)
..+ ++.. .....++..+..|.. ....+++++.++++||+|+|++++.++.+. .+++||++++ +++|+
T Consensus 191 ~~~--~~~~--~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~------~~~~~ni~~~--~~~s~ 258 (372)
T 1db3_A 191 RGE--TFVT--RKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE------QPEDFVIATG--VQYSV 258 (372)
T ss_dssp SCT--TSHH--HHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS------SCCCEEECCC--CCEEH
T ss_pred CCC--cchh--hHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcC------CCceEEEcCC--CceeH
Confidence 532 1100 001234444556653 345678899999999999999999887542 3479999998 88999
Q ss_pred HHHHHHHhhhcccccC
Q psy6053 410 QEIIDIGKSIVTTEVP 425 (614)
Q Consensus 410 ~e~~~~~~~~~g~~~p 425 (614)
.|+++.+.+.+|.+.+
T Consensus 259 ~e~~~~i~~~~g~~~~ 274 (372)
T 1db3_A 259 RQFVEMAAAQLGIKLR 274 (372)
T ss_dssp HHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHhCCCcc
Confidence 9999999999887654
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=266.61 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=190.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+|||||||||||++|+++|++.| ++ |+++.|....... . ...++. +.+|
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~----~------------------~~~~~~-~~~d 97 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITD---ILVVDNLKDGTKF----V------------------NLVDLN-IADY 97 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCC---EEEEECCSSGGGG----G------------------GTTTSC-CSEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcE---EEEEecCCCcchh----h------------------cccCce-Eeee
Confidence 467899999999999999999999998 66 8899987643210 0 111222 6788
Q ss_pred CCCCCCCCCHHHHHHHhc-----cccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccC
Q psy6053 179 AEADELAIKESDRQLLAS-----EVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQ 252 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-----~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~ 252 (614)
+++++ .++.+++ ++|+|||+||.... .......+++|+.||.+++++|++. ++ +|||+||.++++.
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~-~~-r~V~~SS~~v~g~ 169 (357)
T 2x6t_A 98 MDKED------FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGG 169 (357)
T ss_dssp EEHHH------HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGCS
T ss_pred cCcHH------HHHHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcchHHhCC
Confidence 88754 6777776 59999999997654 3456778999999999999999995 77 9999999987765
Q ss_pred Cc--ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecc
Q psy6053 253 EK--VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 253 ~~--~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~ 329 (614)
.. +++|+..+.| .+.|+.||+.+|++++.+.. .|++++++||+.|||+
T Consensus 170 ~~~~~~~E~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp 220 (357)
T 2x6t_A 170 RTSDFIESREYEKP-----------------------------LNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGP 220 (357)
T ss_dssp CSSCCCSSGGGCCC-----------------------------SSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESS
T ss_pred CCCCCcCCcCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECC
Confidence 43 4555532222 27899999999999999876 6899999999999999
Q ss_pred cCCCCccccCCCCc-hHHHHHHHhcCceeeEeeCCCc-cccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccc
Q psy6053 330 WREPLPGWTDNING-PTGLLIGAGKGVIRTMFCDNTG-YADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQV 407 (614)
Q Consensus 330 ~~~p~~gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~-~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~i 407 (614)
...+.. +..+ ...++..+..|....++++++. ..++++++|+|++++.++.+. .+++||++++ +++
T Consensus 221 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~------~~~~~~i~~~--~~~ 288 (357)
T 2x6t_A 221 REGHKG----SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG------VSGIFNLGTG--RAE 288 (357)
T ss_dssp SCTTCG----GGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHC------CCEEEEESCS--CCE
T ss_pred CCCCCc----ccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcC------CCCeEEecCC--Ccc
Confidence 764311 1112 2235555666665556677788 899999999999999988753 2679999998 889
Q ss_pred cHHHHHHHHhhhcccc
Q psy6053 408 SWQEIIDIGKSIVTTE 423 (614)
Q Consensus 408 t~~e~~~~~~~~~g~~ 423 (614)
|+.|+++.+.+.+|.+
T Consensus 289 s~~e~~~~i~~~~g~~ 304 (357)
T 2x6t_A 289 SFQAVADATLAYHKKG 304 (357)
T ss_dssp EHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHcCCC
Confidence 9999999999998876
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=252.99 Aligned_cols=223 Identities=17% Similarity=0.107 Sum_probs=177.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|||||||||||++|+++|+++|++ |++++|. .+|+++
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~r~-------------------------------------~~Dl~d 51 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVE---VIPTDVQ-------------------------------------DLDITN 51 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEE---EEEECTT-------------------------------------TCCTTC
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCe---EEeccCc-------------------------------------cCCCCC
Confidence 589999999999999999999999865 8888884 257776
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
++ ++..+++ ++|+|||+||..... ......+++|+.||.+++++|++. ++ +|||+||.++++...
T Consensus 52 ~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~-~iv~~SS~~v~~~~~~~ 123 (292)
T 1vl0_A 52 VL------AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-GA-EIVQISTDYVFDGEAKE 123 (292)
T ss_dssp HH------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSCCSS
T ss_pred HH------HHHHHHHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEechHHeECCCCCC
Confidence 54 7788877 799999999987643 456678999999999999999995 66 999999998776543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~ 334 (614)
+++|+..+.| .+.|+.||+.+|++++.+ +.+++++||+.|||+ ..
T Consensus 124 ~~~E~~~~~~-----------------------------~~~Y~~sK~~~E~~~~~~---~~~~~~lR~~~v~G~-~~-- 168 (292)
T 1vl0_A 124 PITEFDEVNP-----------------------------QSAYGKTKLEGENFVKAL---NPKYYIVRTAWLYGD-GN-- 168 (292)
T ss_dssp CBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHH---CSSEEEEEECSEESS-SS--
T ss_pred CCCCCCCCCC-----------------------------ccHHHHHHHHHHHHHHhh---CCCeEEEeeeeeeCC-Cc--
Confidence 5666543322 278999999999999988 457999999999998 32
Q ss_pred ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 335 PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
+ ....++..+..|......+ +...++++++|+|++++.++... .+++||++++ +++|+.|+++
T Consensus 169 -~------~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~------~~~~~~i~~~--~~~s~~e~~~ 231 (292)
T 1vl0_A 169 -N------FVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEK------NYGTFHCTCK--GICSWYDFAV 231 (292)
T ss_dssp -C------HHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHT------CCEEEECCCB--SCEEHHHHHH
T ss_pred -C------hHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhcC------CCcEEEecCC--CCccHHHHHH
Confidence 1 1223444444555443443 57889999999999999988763 4679999998 8899999999
Q ss_pred HHhhhccccc
Q psy6053 415 IGKSIVTTEV 424 (614)
Q Consensus 415 ~~~~~~g~~~ 424 (614)
.+.+.+|.+.
T Consensus 232 ~i~~~~g~~~ 241 (292)
T 1vl0_A 232 EIFRLTGIDV 241 (292)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHHhCCCC
Confidence 9999988764
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=264.16 Aligned_cols=261 Identities=13% Similarity=0.140 Sum_probs=175.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++|+++|+++|++ |++++|+.... +++..+.+. +. ...+++++.+|++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~---V~~~~r~~~~~---~~~~~~~~~----------~~-~~~~~~~~~~Dl~ 66 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYT---VRATVRDPTNV---KKVKHLLDL----------PK-AETHLTLWKADLA 66 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCTTCH---HHHHHHHTS----------TT-HHHHEEEEECCTT
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCE---EEEEECCcchh---HHHHHHHhc----------cc-CCCeEEEEEcCCC
Confidence 4689999999999999999999999876 88889975431 122221110 00 1136889999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChh--HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceec-cC---Cc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCH-LQ---EK 254 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~-~~---~~ 254 (614)
+++ ++..+++++|+|||+||...+. .+.+..+++|+.||.+++++|++..++++|||+||..+. +. ..
T Consensus 67 d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~ 140 (337)
T 2c29_D 67 DEG------SFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLP 140 (337)
T ss_dssp STT------TTHHHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCS
T ss_pred CHH------HHHHHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCc
Confidence 987 6888889999999999976542 334467899999999999999985348999999998632 22 12
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
.++|+.+. +.+ ...... ...+.|+.||.++|+++.++.. .|++++++||+.|||+...+
T Consensus 141 ~~~E~~~~-~~~--------------~~~~~~-----~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~ 200 (337)
T 2c29_D 141 VYDESCWS-DME--------------FCRAKK-----MTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMS 200 (337)
T ss_dssp EECTTCCC-CHH--------------HHHHHC-----CTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCS
T ss_pred ccCcccCC-chh--------------hhcccC-----CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 35554221 100 000000 0124699999999999988764 59999999999999997543
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
. +............|... ..+.. ....+++|+|+|++++.++.+.. ..+.|+++++ .+|+.|++
T Consensus 201 ~------~~~~~~~~~~~~~g~~~-~~~~~-~~~~~i~v~Dva~a~~~~~~~~~-----~~~~~~~~~~---~~s~~e~~ 264 (337)
T 2c29_D 201 S------MPPSLITALSPITGNEA-HYSII-RQGQFVHLDDLCNAHIYLFENPK-----AEGRYICSSH---DCIILDLA 264 (337)
T ss_dssp S------CCHHHHHHTHHHHTCGG-GHHHH-TEEEEEEHHHHHHHHHHHHHCTT-----CCEEEEECCE---EEEHHHHH
T ss_pred C------CCchHHHHHHHHcCCCc-ccccc-CCCCEEEHHHHHHHHHHHhcCcc-----cCceEEEeCC---CCCHHHHH
Confidence 1 11111111011222211 11111 12349999999999999886532 3457877554 58999999
Q ss_pred HHHhhhc
Q psy6053 414 DIGKSIV 420 (614)
Q Consensus 414 ~~~~~~~ 420 (614)
+.+.+.+
T Consensus 265 ~~i~~~~ 271 (337)
T 2c29_D 265 KMLREKY 271 (337)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 9999875
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=264.05 Aligned_cols=279 Identities=13% Similarity=0.105 Sum_probs=195.2
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
++.++++|+|||||||||||++|+++|++.|++ |++++|+... .+++.+.+. .. ...+++++
T Consensus 5 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~---~~~~~~~~~--------~~----~~~~~~~~ 66 (342)
T 1y1p_A 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGYK---VRGTARSASK---LANLQKRWD--------AK----YPGRFETA 66 (342)
T ss_dssp TCSSCTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSHHH---HHHHHHHHH--------HH----STTTEEEE
T ss_pred cccCCCCCEEEEECCccHHHHHHHHHHHHCCCE---EEEEeCCccc---HHHHHHHhh--------cc----CCCceEEE
Confidence 445678899999999999999999999999875 8999996421 222222111 00 12468888
Q ss_pred -eCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC-
Q psy6053 176 -SGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE- 253 (614)
Q Consensus 176 -~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~- 253 (614)
.+|+++++ .++.+++++|+|||+||...........+++|+.||.+++++|.+..++++|||+||.++++..
T Consensus 67 ~~~D~~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~ 140 (342)
T 1y1p_A 67 VVEDMLKQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPK 140 (342)
T ss_dssp ECSCTTSTT------TTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCC
T ss_pred EecCCcChH------HHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCC
Confidence 89999876 6777788999999999987665566778999999999999999853478999999999776422
Q ss_pred -----cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEeecce
Q psy6053 254 -----KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLRPSI 325 (614)
Q Consensus 254 -----~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvRp~~ 325 (614)
.+++|+.+.. .......+ ........| .+.|+.||+.+|++++.+.. .+++++++||+.
T Consensus 141 ~~~~~~~~~E~~~~~----~~~~~~~~---~~~~~~~~~------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~ 207 (342)
T 1y1p_A 141 PNVEGIYLDEKSWNL----ESIDKAKT---LPESDPQKS------LWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNY 207 (342)
T ss_dssp TTCCCCEECTTCCCH----HHHHHHHH---SCTTSTTHH------HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESE
T ss_pred CCCCCcccCccccCc----hhhhhhcc---ccccccccc------hHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCc
Confidence 3455653210 00000000 000000011 26899999999999988865 278999999999
Q ss_pred eecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcc
Q psy6053 326 IIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEW 405 (614)
Q Consensus 326 I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~ 405 (614)
|||+...+... . .....++..+..|....+.+++ ...++++++|+|++++.++.+... .+..+ ++++ .
T Consensus 208 v~g~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~Dva~a~~~~~~~~~~----~g~~~-~~~g--~ 275 (342)
T 1y1p_A 208 TIGTIFDPETQ---S-GSTSGWMMSLFNGEVSPALALM-PPQYYVSAVDIGLLHLGCLVLPQI----ERRRV-YGTA--G 275 (342)
T ss_dssp EECCCSCTTTC---C-CHHHHHHHHHHTTCCCHHHHTC-CSEEEEEHHHHHHHHHHHHHCTTC----CSCEE-EECC--E
T ss_pred eECCCCCCCCC---C-ccHHHHHHHHHcCCCccccccC-CcCCEeEHHHHHHHHHHHHcCccc----CCceE-EEeC--C
Confidence 99997654211 0 1233455566666544434444 678999999999999998876431 34444 4455 6
Q ss_pred cccHHHHHHHHhhhcccc
Q psy6053 406 QVSWQEIIDIGKSIVTTE 423 (614)
Q Consensus 406 ~it~~e~~~~~~~~~g~~ 423 (614)
++|+.|+++.+.+.+|.+
T Consensus 276 ~~s~~e~~~~i~~~~~~~ 293 (342)
T 1y1p_A 276 TFDWNTVLATFRKLYPSK 293 (342)
T ss_dssp EECHHHHHHHHHHHCTTS
T ss_pred CCCHHHHHHHHHHHCCCc
Confidence 799999999999998764
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=262.78 Aligned_cols=257 Identities=15% Similarity=0.082 Sum_probs=191.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccC-eEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIID-KVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~-~v~~v~gDl~~ 181 (614)
|+|||||||||||++|+++|++.|++ |++++|....... ++++++ ..+... ... ++.++.+|+++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~---V~~~~r~~~~~~~-~~~~~~---------~~~~~~-~~~~~~~~~~~Dl~d 94 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYE---VHGLIRRSSNFNT-QRINHI---------YIDPHN-VNKALMKLHYADLTD 94 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSSCCC-TTTTTT---------C---------CCEEEEECCTTC
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCE---EEEEecCCccccc-hhhhhh---------hhcccc-ccccceEEEECCCCC
Confidence 68999999999999999999999865 8999997643110 011100 000000 112 78999999998
Q ss_pred CCCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCc-----eEEEEeCceecc
Q psy6053 182 DELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLE-----LFVHISTAYCHL 251 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k-----~~V~vST~~~~~ 251 (614)
++ .+..++++ +|+|||+||..... ......+++|+.||.+++++|.+. +++ +|||+||.++++
T Consensus 95 ~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~~~~~~v~~SS~~vyg 167 (381)
T 1n7h_A 95 AS------SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-TIDSGRTVKYYQAGSSEMFG 167 (381)
T ss_dssp HH------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEGGGGT
T ss_pred HH------HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCccCCccEEEEeCcHHHhC
Confidence 65 78888875 69999999987753 345678899999999999999985 565 999999998876
Q ss_pred CCc-ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecc
Q psy6053 252 QEK-VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 252 ~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~ 329 (614)
... +++|+....| .+.|+.||+.+|++++.+.. .+++++++|++++||+
T Consensus 168 ~~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp 218 (381)
T 1n7h_A 168 STPPPQSETTPFHP-----------------------------RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESP 218 (381)
T ss_dssp TSCSSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECT
T ss_pred CCCCCCCCCCCCCC-----------------------------CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCC
Confidence 533 4555532222 27899999999999998876 5899999999999998
Q ss_pred cCCCCccccCCCCc--hHHHHHHHhcCce-eeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc
Q psy6053 330 WREPLPGWTDNING--PTGLLIGAGKGVI-RTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ 406 (614)
Q Consensus 330 ~~~p~~gw~d~~~g--~~~~~~~~~~g~~-~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~ 406 (614)
...+ +... ...++..+..|.. ....++++...++++|+|+|++++.++... .+++||++++ ++
T Consensus 219 ~~~~------~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~------~~~~~~i~~~--~~ 284 (381)
T 1n7h_A 219 RRGE------NFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQE------KPDDYVVATE--EG 284 (381)
T ss_dssp TSCT------TSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSS------SCCEEEECCS--CE
T ss_pred CCCC------cchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCC------CCCeEEeeCC--CC
Confidence 6421 1111 1223444455543 334678889999999999999999988653 3479999998 88
Q ss_pred ccHHHHHHHHhhhcccc
Q psy6053 407 VSWQEIIDIGKSIVTTE 423 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~ 423 (614)
+|+.|+++.+.+.+|.+
T Consensus 285 ~s~~e~~~~i~~~~g~~ 301 (381)
T 1n7h_A 285 HTVEEFLDVSFGYLGLN 301 (381)
T ss_dssp EEHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHcCCC
Confidence 99999999999998875
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=261.48 Aligned_cols=245 Identities=17% Similarity=0.165 Sum_probs=175.4
Q ss_pred EEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
+|||||||||||++|+++|++.| ++ |+++.|....... +.+ .++. +.+|++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~-~~~---------------------~~~~-~~~d~~~~ 54 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITD---ILVVDNLKDGTKF-VNL---------------------VDLN-IADYMDKE 54 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCC---EEEEECCSSGGGG-HHH---------------------HTSC-CSEEEEHH
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcE---EEEEccCCCCchh-hhc---------------------Ccce-eccccccH
Confidence 48999999999999999999998 66 8899987643211 111 0122 67888875
Q ss_pred CCCCCHHHHHHHhcc-----ccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 183 ELAIKESDRQLLASE-----VDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~-----vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
+ .++.++++ +|+|||+||.... ..+....+++|+.||.+++++|++. ++ +|||+||.++++...
T Consensus 55 ~------~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~~ 126 (310)
T 1eq2_A 55 D------FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTSD 126 (310)
T ss_dssp H------HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGTTCCSC
T ss_pred H------HHHHHHhccccCCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeHHHhCCCCCC
Confidence 4 67888775 9999999998754 2346778999999999999999995 77 999999998876543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+++|+..+.| .+.|+.||+.+|+++..+.. .|++++++||+.|||+...+
T Consensus 127 ~~~E~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~ 177 (310)
T 1eq2_A 127 FIESREYEKP-----------------------------LNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGH 177 (310)
T ss_dssp BCSSGGGCCC-----------------------------SSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGG
T ss_pred CCCCCCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCC
Confidence 4555532222 27899999999999999876 68999999999999987532
Q ss_pred CccccCCCCch-HHHHHHHhcCceeeEeeCCCc-cccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 334 LPGWTDNINGP-TGLLIGAGKGVIRTMFCDNTG-YADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 334 ~~gw~d~~~g~-~~~~~~~~~g~~~~~~~~~~~-~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
.. +..+. ..++..+..|....++++++. .+++++++|+|++++.++.+. .+++||++++ +++|+.|
T Consensus 178 ~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~------~~~~~~i~~~--~~~s~~e 245 (310)
T 1eq2_A 178 KG----SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG------VSGIFNLGTG--RAESFQA 245 (310)
T ss_dssp GG----GGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHC------CCEEEEESCS--CCBCHHH
T ss_pred CC----ccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcC------CCCeEEEeCC--CccCHHH
Confidence 11 11122 235555566665555677888 999999999999999988753 2679999998 8899999
Q ss_pred HHHHHhhhcccc
Q psy6053 412 IIDIGKSIVTTE 423 (614)
Q Consensus 412 ~~~~~~~~~g~~ 423 (614)
+++.+.+.+|.+
T Consensus 246 ~~~~i~~~~g~~ 257 (310)
T 1eq2_A 246 VADATLAYHKKG 257 (310)
T ss_dssp HHHHC-------
T ss_pred HHHHHHHHcCCC
Confidence 999999998875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=253.12 Aligned_cols=230 Identities=10% Similarity=0.062 Sum_probs=168.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|+++|++ |++++|++... ++ ..|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~---V~~l~R~~~~~----------------------------~~---~~~---- 42 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHE---VTLVSRKPGPG----------------------------RI---TWD---- 42 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCCTT----------------------------EE---EHH----
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCCCcC----------------------------ee---ecc----
Confidence 68999999999999999999999987 89999975321 11 111
Q ss_pred CCCCCHHHHHHHhccccEEEEccccc------Chh-HHHHHHHHHhHHHHHHHHHHHHHcC-CCceEEEEeCceeccCCc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATI------RFD-EALKKAVLLNTRGTKMMLSLAKEMK-HLELFVHISTAYCHLQEK 254 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v------~~~-~~~~~~~~~Nv~gt~~ll~la~~~~-~~k~~V~vST~~~~~~~~ 254 (614)
+.....++++|+|||+|+.. ++. ...+...+.|+.||++++++|++.+ +.+.||+.||++++++..
T Consensus 43 ------~~~~~~l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~ 116 (298)
T 4b4o_A 43 ------ELAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSL 116 (298)
T ss_dssp ------HHHHHCCCSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCS
T ss_pred ------hhhHhhccCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCC
Confidence 12233457899999999842 122 2335678999999999999999853 344589999998777643
Q ss_pred --ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCC
Q psy6053 255 --VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 255 --~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~ 332 (614)
.++|+..+.|. +.|+.+|...|....... .+++++++||+.|||+..
T Consensus 117 ~~~~~E~~p~~~~-----------------------------~~~~~~~~~~e~~~~~~~-~~~~~~~~r~~~v~g~~~- 165 (298)
T 4b4o_A 117 TAEYDEDSPGGDF-----------------------------DFFSNLVTKWEAAARLPG-DSTRQVVVRSGVVLGRGG- 165 (298)
T ss_dssp SCCBCTTCCCSCS-----------------------------SHHHHHHHHHHHHHCCSS-SSSEEEEEEECEEECTTS-
T ss_pred CCcccccCCcccc-----------------------------chhHHHHHHHHHHHHhhc-cCCceeeeeeeeEEcCCC-
Confidence 55665332221 456677776666543322 589999999999999853
Q ss_pred CCccccCCCCchH-HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 333 PLPGWTDNINGPT-GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 333 p~~gw~d~~~g~~-~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
+.. .++.....|.. ...+++++.+++|||||+|++++.++.++. ..++||++++ +++|++|
T Consensus 166 ----------~~~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~-----~~g~yn~~~~--~~~t~~e 227 (298)
T 4b4o_A 166 ----------GAMGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHALEANH-----VHGVLNGVAP--SSATNAE 227 (298)
T ss_dssp ----------HHHHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHHHCTT-----CCEEEEESCS--CCCBHHH
T ss_pred ----------CchhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHHhCCC-----CCCeEEEECC--CccCHHH
Confidence 122 23333344443 345899999999999999999999998764 4569999999 9999999
Q ss_pred HHHHHhhhcccccC
Q psy6053 412 IIDIGKSIVTTEVP 425 (614)
Q Consensus 412 ~~~~~~~~~g~~~p 425 (614)
+++.+.+.+|++.+
T Consensus 228 ~~~~ia~~lgrp~~ 241 (298)
T 4b4o_A 228 FAQTFGAALGRRAF 241 (298)
T ss_dssp HHHHHHHHHTCCCC
T ss_pred HHHHHHHHhCcCCc
Confidence 99999999887543
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=253.82 Aligned_cols=259 Identities=15% Similarity=0.135 Sum_probs=194.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC----ccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN----VKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~----v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+++|+|||||||||||++|+++|++.|+. +.+|++++|....... . ...++.++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------------------~-~~~~~~~~ 69 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------------------G-FSGAVDAR 69 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------------------T-CCSEEEEE
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------------------c-cCCceeEE
Confidence 67899999999999999999999999820 0248999997643210 0 23578999
Q ss_pred eCCCCCCCCCCCHHHHHHHh-ccccEEEEcccccCh--hHHHHHHHHHhHHHHHHHHHHHHHcC----CCceEEEEeCce
Q psy6053 176 SGDAEADELAIKESDRQLLA-SEVDIMIHGAATIRF--DEALKKAVLLNTRGTKMMLSLAKEMK----HLELFVHISTAY 248 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~-~~vd~ViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~la~~~~----~~k~~V~vST~~ 248 (614)
.+|+++++ .++.++ .++|+|||+||.... .+.+...+++|+.||.+++++|++.. ++++|||+||.+
T Consensus 70 ~~Dl~d~~------~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~ 143 (342)
T 2hrz_A 70 AADLSAPG------EAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIA 143 (342)
T ss_dssp ECCTTSTT------HHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGG
T ss_pred EcCCCCHH------HHHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchH
Confidence 99999987 788877 489999999997653 24566788999999999999999853 278999999998
Q ss_pred eccCC--cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecce
Q psy6053 249 CHLQE--KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSI 325 (614)
Q Consensus 249 ~~~~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~ 325 (614)
+++.. .+++|+..+.| .+.|+.||+.+|+++.++.. .+++.+++|++.
T Consensus 144 ~~~~~~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~ 194 (342)
T 2hrz_A 144 VFGAPLPYPIPDEFHTTP-----------------------------LTSYGTQKAICELLLSDYSRRGFFDGIGIRLPT 194 (342)
T ss_dssp GCCSSCCSSBCTTCCCCC-----------------------------SSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECE
T ss_pred hhCCCCCCCcCCCCCCCC-----------------------------cchHHHHHHHHHHHHHHHHHhcCCCceeEEeee
Confidence 77653 35666533222 26899999999999998876 579999999999
Q ss_pred eecccCCCCccccCCCC-c-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 326 IIPVWREPLPGWTDNIN-G-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 326 I~g~~~~p~~gw~d~~~-g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
|+|.. |+..+.. . ...++.....|....++++++...++++++|+|++++.++...... ...+++||++ +
T Consensus 195 v~g~p-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~-~~~~~~~ni~-g- 266 (342)
T 2hrz_A 195 ICIRP-----GKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEK-VGPRRNLSMP-G- 266 (342)
T ss_dssp ETTCC-----SSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHH-HCSCCEEECC-C-
T ss_pred EEecC-----CCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhccccc-cCCccEEEcC-C-
Confidence 99831 2221111 1 2234555566665555566677788999999999999988754310 0146799995 4
Q ss_pred cccccHHHHHHHHhhhccccc
Q psy6053 404 EWQVSWQEIIDIGKSIVTTEV 424 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~~~ 424 (614)
+++|+.|+++.+.+.+|.+.
T Consensus 267 -~~~s~~e~~~~i~~~~g~~~ 286 (342)
T 2hrz_A 267 -LSATVGEQIEALRKVAGEKA 286 (342)
T ss_dssp -EEEEHHHHHHHHHHHHCHHH
T ss_pred -CCCCHHHHHHHHHHHcCccc
Confidence 57999999999999988754
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=247.82 Aligned_cols=220 Identities=16% Similarity=0.174 Sum_probs=172.5
Q ss_pred cEEEEecccccccHHHHHHHHhh--CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK--SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~--g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
|+|||||||||+|++++++|+++ |++ |++++|+.... +.+ ...+++++.+|++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~---V~~~~r~~~~~---~~l-------------------~~~~~~~~~~D~~ 55 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQ---IIAIVRNVEKA---STL-------------------ADQGVEVRHGDYN 55 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGG---EEEEESCTTTT---HHH-------------------HHTTCEEEECCTT
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCe---EEEEEcCHHHH---hHH-------------------hhcCCeEEEeccC
Confidence 57999999999999999999998 766 89999975432 111 1135789999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKP 260 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~ 260 (614)
+++ ++..+++++|+|||+||.. ... ++|+.|+.+++++|++ .++++|||+||.+++..
T Consensus 56 d~~------~l~~~~~~~d~vi~~a~~~-~~~------~~n~~~~~~l~~a~~~-~~~~~~v~~Ss~~~~~~-------- 113 (287)
T 2jl1_A 56 QPE------SLQKAFAGVSKLLFISGPH-YDN------TLLIVQHANVVKAARD-AGVKHIAYTGYAFAEES-------- 113 (287)
T ss_dssp CHH------HHHHHTTTCSEEEECCCCC-SCH------HHHHHHHHHHHHHHHH-TTCSEEEEEEETTGGGC--------
T ss_pred CHH------HHHHHHhcCCEEEEcCCCC-cCc------hHHHHHHHHHHHHHHH-cCCCEEEEECCCCCCCC--------
Confidence 865 8999999999999999963 211 6799999999999999 48999999999876310
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCC
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN 340 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~ 340 (614)
|..|+.+|+.+|+++++. |++++++||+.++|+.. +.+
T Consensus 114 ---------------------------------~~~y~~~K~~~E~~~~~~---~~~~~ilrp~~~~~~~~---~~~--- 151 (287)
T 2jl1_A 114 ---------------------------------IIPLAHVHLATEYAIRTT---NIPYTFLRNALYTDFFV---NEG--- 151 (287)
T ss_dssp ---------------------------------CSTHHHHHHHHHHHHHHT---TCCEEEEEECCBHHHHS---SGG---
T ss_pred ---------------------------------CCchHHHHHHHHHHHHHc---CCCeEEEECCEeccccc---hhh---
Confidence 257999999999999763 89999999998887531 111
Q ss_pred CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhc
Q psy6053 341 INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIV 420 (614)
Q Consensus 341 ~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~ 420 (614)
+......|... .+.++...++++++|+|++++.++.++. ..+++||++++ +++|+.|+++.+.+.+
T Consensus 152 ------~~~~~~~~~~~--~~~~~~~~~~i~~~Dva~~~~~~~~~~~----~~g~~~~i~~~--~~~s~~e~~~~i~~~~ 217 (287)
T 2jl1_A 152 ------LRASTESGAIV--TNAGSGIVNSVTRNELALAAATVLTEEG----HENKTYNLVSN--QPWTFDELAQILSEVS 217 (287)
T ss_dssp ------GHHHHHHTEEE--ESCTTCCBCCBCHHHHHHHHHHHHTSSS----CTTEEEEECCS--SCBCHHHHHHHHHHHH
T ss_pred ------HHHHhhCCcee--ccCCCCccCccCHHHHHHHHHHHhcCCC----CCCcEEEecCC--CcCCHHHHHHHHHHHH
Confidence 11112234322 4556788999999999999999886543 25789999998 8899999999999998
Q ss_pred ccccC
Q psy6053 421 TTEVP 425 (614)
Q Consensus 421 g~~~p 425 (614)
|.+.+
T Consensus 218 g~~~~ 222 (287)
T 2jl1_A 218 GKKVV 222 (287)
T ss_dssp SSCCE
T ss_pred CCcce
Confidence 87644
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=251.76 Aligned_cols=243 Identities=17% Similarity=0.149 Sum_probs=186.2
Q ss_pred CcccccccCCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCe
Q psy6053 93 PDRIGETFTGKTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDK 171 (614)
Q Consensus 93 ~~~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~ 171 (614)
.+++.+++++|+|||||||||+|++++++|++. |+. +|+++.|.... .+.+.+.+ ...+
T Consensus 12 ~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~--~V~~~~r~~~~---~~~~~~~~---------------~~~~ 71 (344)
T 2gn4_A 12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAK--KIIVYSRDELK---QSEMAMEF---------------NDPR 71 (344)
T ss_dssp ----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCS--EEEEEESCHHH---HHHHHHHH---------------CCTT
T ss_pred CccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCC--EEEEEECChhh---HHHHHHHh---------------cCCC
Confidence 345677889999999999999999999999999 862 49999996321 12221111 1257
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 172 VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
+.++.||+++++ .+..+++++|+|||+||.... .......+++|+.||.+++++|.+. ++++||++||..
T Consensus 72 v~~~~~Dl~d~~------~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~v~~~V~~SS~~ 144 (344)
T 2gn4_A 72 MRFFIGDVRDLE------RLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALSTDK 144 (344)
T ss_dssp EEEEECCTTCHH------HHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGG
T ss_pred EEEEECCCCCHH------HHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCCc
Confidence 899999999865 788999999999999998753 2334578999999999999999995 899999999975
Q ss_pred eccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecc
Q psy6053 249 CHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPS 324 (614)
Q Consensus 249 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~ 324 (614)
+.. | .+.|+.||+.+|.++..+.. .|++++++|||
T Consensus 145 ~~~------------p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg 183 (344)
T 2gn4_A 145 AAN------------P-----------------------------INLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYG 183 (344)
T ss_dssp GSS------------C-----------------------------CSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCC
T ss_pred cCC------------C-----------------------------ccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 421 1 17899999999999998874 47999999999
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCc-eeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGV-IRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ 403 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~-~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~ 403 (614)
+|+|+... ....+...+..|. ...+ .+++..+++++++|+|++++.++.+.. .+++||++++
T Consensus 184 ~v~g~~~~----------~i~~~~~~~~~g~~~~~i-~~~~~~r~~i~v~D~a~~v~~~l~~~~-----~g~~~~~~~~- 246 (344)
T 2gn4_A 184 NVVGSRGS----------VVPFFKKLVQNKASEIPI-TDIRMTRFWITLDEGVSFVLKSLKRMH-----GGEIFVPKIP- 246 (344)
T ss_dssp EETTCTTS----------HHHHHHHHHHHTCCCEEE-SCTTCEEEEECHHHHHHHHHHHHHHCC-----SSCEEEECCC-
T ss_pred cEECCCCC----------HHHHHHHHHHcCCCceEE-eCCCeEEeeEEHHHHHHHHHHHHhhcc-----CCCEEecCCC-
Confidence 99997531 1112344455565 3333 467788899999999999999987642 5779998765
Q ss_pred cccccHHHHHHHHhhhccc
Q psy6053 404 EWQVSWQEIIDIGKSIVTT 422 (614)
Q Consensus 404 ~~~it~~e~~~~~~~~~g~ 422 (614)
++++.|+++.+.+.++.
T Consensus 247 --~~s~~el~~~i~~~~~~ 263 (344)
T 2gn4_A 247 --SMKMTDLAKALAPNTPT 263 (344)
T ss_dssp --EEEHHHHHHHHCTTCCE
T ss_pred --cEEHHHHHHHHHHhCCe
Confidence 59999999999876443
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=269.67 Aligned_cols=234 Identities=17% Similarity=0.132 Sum_probs=174.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|||||||||||++|++.|++.|++ |++++|+.... ..+.+|+.+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~---V~~l~R~~~~~------------------------------~~v~~d~~~ 193 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHE---VIQLVRKEPKP------------------------------GKRFWDPLN 193 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESSSCCT------------------------------TCEECCTTS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCCCCc------------------------------cceeecccc
Confidence 689999999999999999999999876 99999986531 125678765
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh----hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceecc-CC--c
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF----DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHL-QE--K 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~-~~--~ 254 (614)
. ...+++++|+|||+||.... .......+++|+.||.+++++|.+..++++|||+||.++++ .. .
T Consensus 194 ~--------~~~~l~~~D~Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~ 265 (516)
T 3oh8_A 194 P--------ASDLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDE 265 (516)
T ss_dssp C--------CTTTTTTCSEEEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEE
T ss_pred h--------hHHhcCCCCEEEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCC
Confidence 3 23456799999999998632 23456788999999999999944436889999999998876 22 2
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~ 334 (614)
+++|+... | .+.|+.+|..+|.++......|++++|+||+.|||+..
T Consensus 266 ~~~E~~~~-~-----------------------------~~~y~~~~~~~E~~~~~~~~~gi~~~ilRp~~v~Gp~~--- 312 (516)
T 3oh8_A 266 ILTEESES-G-----------------------------DDFLAEVCRDWEHATAPASDAGKRVAFIRTGVALSGRG--- 312 (516)
T ss_dssp EECTTSCC-C-----------------------------SSHHHHHHHHHHHTTHHHHHTTCEEEEEEECEEEBTTB---
T ss_pred ccCCCCCC-C-----------------------------cChHHHHHHHHHHHHHHHHhCCCCEEEEEeeEEECCCC---
Confidence 55665322 1 26799999999988876655799999999999999852
Q ss_pred ccccCCCCchHHHHHH-HhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 335 PGWTDNINGPTGLLIG-AGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~-~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
+....+.. +..|.. ..++++++.+++|+++|+|++++.++.+.. ..++||++++ +++|+.|++
T Consensus 313 --------~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~-----~~g~~ni~~~--~~~s~~el~ 376 (516)
T 3oh8_A 313 --------GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVDAQ-----ISGPINAVAP--NPVSNADMT 376 (516)
T ss_dssp --------SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHCTT-----CCEEEEESCS--CCEEHHHHH
T ss_pred --------ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhCcc-----cCCcEEEECC--CCCCHHHHH
Confidence 22222222 233332 356788999999999999999999997654 4569999999 899999999
Q ss_pred HHHhhhcccccC
Q psy6053 414 DIGKSIVTTEVP 425 (614)
Q Consensus 414 ~~~~~~~g~~~p 425 (614)
+.+.+.+|.+.+
T Consensus 377 ~~i~~~~g~~~~ 388 (516)
T 3oh8_A 377 KILATSMHRPAF 388 (516)
T ss_dssp HHTTC-------
T ss_pred HHHHHHhCCCCC
Confidence 999999887643
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=242.57 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=165.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||+|++++++|+++|++ |++++|+..... . ...+++++.+|+++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~----------------------~-~~~~~~~~~~Dl~d 57 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFE---VTAVVRHPEKIK----------------------I-ENEHLKVKKADVSS 57 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCE---EEEECSCGGGCC----------------------C-CCTTEEEECCCTTC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCE---EEEEEcCcccch----------------------h-ccCceEEEEecCCC
Confidence 479999999999999999999999865 999999754311 1 23679999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-cccccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-VLYEKP 260 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-~i~E~~ 260 (614)
++ ++..+++++|+|||+|+.... ....+++|+.++.+++++|++. ++++|||+||..+..... ...|+.
T Consensus 58 ~~------~~~~~~~~~d~vi~~a~~~~~---~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~ 127 (227)
T 3dhn_A 58 LD------EVCEVCKGADAVISAFNPGWN---NPDIYDETIKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAPGLRLMDS 127 (227)
T ss_dssp HH------HHHHHHTTCSEEEECCCC---------CCSHHHHHHHHHHHHHHHT-TCSEEEEECCSTTSEEETTEEGGGT
T ss_pred HH------HHHHHhcCCCEEEEeCcCCCC---ChhHHHHHHHHHHHHHHHHHHh-CCCEEEEeCChhhccCCCCCccccC
Confidence 65 899999999999999987522 1236788999999999999994 889999999986543321 222221
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCccccC
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPGWTD 339 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~gw~d 339 (614)
...| .+.|+.+|+.+|.+++.... .|++++++||+.|||+...+ +
T Consensus 128 ~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~--~--- 173 (227)
T 3dhn_A 128 GEVP-----------------------------ENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRT--G--- 173 (227)
T ss_dssp TCSC-----------------------------GGGHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCC--C---
T ss_pred Ccch-----------------------------HHHHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCccc--c---
Confidence 1111 26899999999999988884 79999999999999986532 1
Q ss_pred CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 340 NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 340 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
.. ..+....+. .++. .++++++|+|++++.++.++.. .+++||++++ ++.+|++
T Consensus 174 -~~---------~~~~~~~~~-~~~~-~~~i~~~Dva~ai~~~l~~~~~----~g~~~~~~~~--~~~~~~~ 227 (227)
T 3dhn_A 174 -RY---------RLGKDDMIV-DIVG-NSHISVEDYAAAMIDELEHPKH----HQERFTIGYL--EHHHHHH 227 (227)
T ss_dssp -CC---------EEESSBCCC-CTTS-CCEEEHHHHHHHHHHHHHSCCC----CSEEEEEECC--SCCC---
T ss_pred -ce---------eecCCCccc-CCCC-CcEEeHHHHHHHHHHHHhCccc----cCcEEEEEee--hhcccCC
Confidence 00 011111111 1222 8999999999999999988764 7899999999 7888763
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=256.12 Aligned_cols=251 Identities=14% Similarity=0.125 Sum_probs=187.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC--CccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSP--NVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~--~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+|+|||||||||||++|+++|+++|. .+.+|++++|...... . ...+++++.+|+
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~----------------------~-~~~~~~~~~~Dl 57 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW----------------------H-EDNPINYVQCDI 57 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC----------------------C-CSSCCEEEECCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc----------------------c-ccCceEEEEeec
Confidence 57999999999999999999999981 1124999999865421 0 225688999999
Q ss_pred CCCCCCCCHHHHHHHhcc---ccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEE-------EEeCce
Q psy6053 180 EADELAIKESDRQLLASE---VDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFV-------HISTAY 248 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~---vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V-------~vST~~ 248 (614)
++++ ++.+++++ +|+|||+||... .+.....++|+.||.+++++|++. +++++|| |+||.+
T Consensus 58 ~d~~------~~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~ 129 (364)
T 2v6g_A 58 SDPD------DSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFE 129 (364)
T ss_dssp TSHH------HHHHHHTTCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGG
T ss_pred CCHH------HHHHHHhcCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechh
Confidence 9865 78888888 999999999864 345678899999999999999984 2689998 799987
Q ss_pred eccCC----cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CC-CCEEEee
Q psy6053 249 CHLQE----KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NG-MPCLMLR 322 (614)
Q Consensus 249 ~~~~~----~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~g-lp~~IvR 322 (614)
+++.. .+++|+....| .++.| +.+|+++.++.+ .+ ++++|+|
T Consensus 130 vyg~~~~~~~~~~E~~~~~~----------------------------~~~~y----~~~E~~~~~~~~~~~~~~~~ilR 177 (364)
T 2v6g_A 130 SYGKIESHDPPYTEDLPRLK----------------------------YMNFY----YDLEDIMLEEVEKKEGLTWSVHR 177 (364)
T ss_dssp GTTTSCCCCSSBCTTSCCCS----------------------------SCCHH----HHHHHHHHHHHTTSTTCEEEEEE
T ss_pred hccccccCCCCCCccccCCc----------------------------cchhh----HHHHHHHHHHhhcCCCceEEEEC
Confidence 77653 24555532211 13567 458999988876 56 9999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHH--hcCceeeEeeCC---CccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGA--GKGVIRTMFCDN---TGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~--~~g~~~~~~~~~---~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
|+.|||+...+.. +...+..++..+ ..|....+++++ ....++++|||+|++++.++.++.. .+++|
T Consensus 178 p~~v~G~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~----~g~~~ 249 (364)
T 2v6g_A 178 PGNIFGFSPYSMM----NLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYA----KNEAF 249 (364)
T ss_dssp ESSEECCCTTCSS----CHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGG----TTEEE
T ss_pred CCceeCCCCCccc----chHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCCC----CCceE
Confidence 9999998764211 100111123333 246544456666 3457889999999999999986542 57799
Q ss_pred EeccCCcccccHHHHHHHHhhhcccccC
Q psy6053 398 HLTSSQEWQVSWQEIIDIGKSIVTTEVP 425 (614)
Q Consensus 398 ni~~~~~~~it~~e~~~~~~~~~g~~~p 425 (614)
|++++ +++|+.|+++.+.+.+|.+.+
T Consensus 250 ni~~~--~~~s~~e~~~~i~~~~g~~~~ 275 (364)
T 2v6g_A 250 NVSNG--DVFKWKHFWKVLAEQFGVECG 275 (364)
T ss_dssp EECCS--CCBCHHHHHHHHHHHHTCCBC
T ss_pred EecCC--CcCCHHHHHHHHHHHhCCCCC
Confidence 99998 789999999999999887644
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-28 Score=255.95 Aligned_cols=220 Identities=20% Similarity=0.200 Sum_probs=176.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||+|++|+++|+++|+- +|++++|. +
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~--~v~~~d~~-----------------------------------------~-- 35 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDH--HIFEVHRQ-----------------------------------------T-- 35 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC--EEEECCTT-----------------------------------------C--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC--EEEEECCC-----------------------------------------C--
Confidence 68999999999999999999999861 26655552 1
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCc-eEEEEeCceeccCCcccccccC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHISTAYCHLQEKVLYEKPY 261 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~V~vST~~~~~~~~~i~E~~~ 261 (614)
+.+++..+++++|+|||+||..+.. ......++|+.++.+++++|++. +++ +|||+||.++++
T Consensus 36 ----d~~~l~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~Ss~~~~~---------- 99 (369)
T 3st7_A 36 ----KEEELESALLKADFIVHLAGVNRPE-HDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSSSIQATQ---------- 99 (369)
T ss_dssp ----CHHHHHHHHHHCSEEEECCCSBCTT-CSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEEEGGGGS----------
T ss_pred ----CHHHHHHHhccCCEEEECCcCCCCC-CHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCchhhcC----------
Confidence 2347888888999999999987643 34556789999999999999995 666 999999998754
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCccccCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPGWTDN 340 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~gw~d~ 340 (614)
++.|+.||+.+|++++++.+ .|++++|+||++|||++..|.
T Consensus 100 --------------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~------ 141 (369)
T 3st7_A 100 --------------------------------DNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPN------ 141 (369)
T ss_dssp --------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT------
T ss_pred --------------------------------CCCchHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCC------
Confidence 17899999999999999776 589999999999999987652
Q ss_pred CCchH-HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhh
Q psy6053 341 INGPT-GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 341 ~~g~~-~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
..+.. .++..+..|.... .++++..++++|+||+|++++.++..+.. ..+++||++++ +++|+.|+++.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~Dva~~~~~~l~~~~~---~~~~~~~i~~~--~~~s~~e~~~~~~~~ 215 (369)
T 3st7_A 142 YNSVIATFCYKIARNEEIQ-VNDRNVELTLNYVDDIVAEIKRAIEGTPT---IENGVPTVPNV--FKVTLGEIVDLLYKF 215 (369)
T ss_dssp SSCHHHHHHHHHHTTCCCC-CSCTTCEEEEEEHHHHHHHHHHHHHTCCC---EETTEECCSCC--EEEEHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCeE-ecCCCeEEEEEEHHHHHHHHHHHHhCCcc---cCCceEEeCCC--CceeHHHHHHHHHHH
Confidence 23333 3444555555433 35788999999999999999999987642 12789999998 899999999999999
Q ss_pred cccccCCC
Q psy6053 420 VTTEVPLN 427 (614)
Q Consensus 420 ~g~~~p~~ 427 (614)
+|.+.+..
T Consensus 216 ~g~~~~~~ 223 (369)
T 3st7_A 216 KQSRLDRT 223 (369)
T ss_dssp HHHHHHTC
T ss_pred hCCCcccc
Confidence 88865443
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=237.70 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=165.5
Q ss_pred EEEEecccccccHHHHHHHHhh--CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRK--SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~--g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|||||||||+|++++++|++. |++ |++++|+..... .+ ...+++++.+|+++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~---V~~~~r~~~~~~---~~-------------------~~~~~~~~~~D~~d 55 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQ---IVAIVRNPAKAQ---AL-------------------AAQGITVRQADYGD 55 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGG---EEEEESCTTTCH---HH-------------------HHTTCEEEECCTTC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCce---EEEEEcChHhhh---hh-------------------hcCCCeEEEcCCCC
Confidence 4899999999999999999998 766 899999764321 11 11357889999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPY 261 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~ 261 (614)
++ ++..+++++|+|||+|+... ..|+.++++++++|++. ++++|||+||.+++.
T Consensus 56 ~~------~~~~~~~~~d~vi~~a~~~~---------~~~~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~---------- 109 (286)
T 2zcu_A 56 EA------ALTSALQGVEKLLLISSSEV---------GQRAPQHRNVINAAKAA-GVKFIAYTSLLHADT---------- 109 (286)
T ss_dssp HH------HHHHHTTTCSEEEECC-----------------CHHHHHHHHHHHH-TCCEEEEEEETTTTT----------
T ss_pred HH------HHHHHHhCCCEEEEeCCCCc---------hHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCC----------
Confidence 65 89999999999999998521 25899999999999995 899999999987641
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~ 341 (614)
. |..|+.+|..+|+++++. |++++++||+.++++..
T Consensus 110 -~------------------------------~~~y~~sK~~~e~~~~~~---~~~~~ilrp~~~~~~~~---------- 145 (286)
T 2zcu_A 110 -S------------------------------PLGLADEHIETEKMLADS---GIVYTLLRNGWYSENYL---------- 145 (286)
T ss_dssp -C------------------------------CSTTHHHHHHHHHHHHHH---CSEEEEEEECCBHHHHH----------
T ss_pred -C------------------------------cchhHHHHHHHHHHHHHc---CCCeEEEeChHHhhhhH----------
Confidence 0 257999999999999874 89999999987765421
Q ss_pred CchHHHHHHH-hcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhc
Q psy6053 342 NGPTGLLIGA-GKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIV 420 (614)
Q Consensus 342 ~g~~~~~~~~-~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~ 420 (614)
..+... ..|... .++++...++++++|+|++++.++.++.. .+++||++++ +++|+.|+++.+.+.+
T Consensus 146 ----~~~~~~~~~~~~~--~~~~~~~~~~i~~~Dva~~~~~~~~~~~~----~g~~~~i~~~--~~~s~~e~~~~i~~~~ 213 (286)
T 2zcu_A 146 ----ASAPAALEHGVFI--GAAGDGKIASATRADYAAAAARVISEAGH----EGKVYELAGD--SAWTLTQLAAELTKQS 213 (286)
T ss_dssp ----TTHHHHHHHTEEE--ESCTTCCBCCBCHHHHHHHHHHHHHSSSC----TTCEEEECCS--SCBCHHHHHHHHHHHH
T ss_pred ----HHhHHhhcCCcee--ccCCCCccccccHHHHHHHHHHHhcCCCC----CCceEEEeCC--CcCCHHHHHHHHHHHH
Confidence 011122 234332 45678889999999999999999876432 5789999988 7899999999999998
Q ss_pred ccccC
Q psy6053 421 TTEVP 425 (614)
Q Consensus 421 g~~~p 425 (614)
|.+.+
T Consensus 214 g~~~~ 218 (286)
T 2zcu_A 214 GKQVT 218 (286)
T ss_dssp SSCCE
T ss_pred CCCCc
Confidence 87644
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-27 Score=237.37 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=174.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++|+++|++.|++ |+++.|..... ...+++++.+|++
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~---V~~~~r~~~~~-------------------------~~~~~~~~~~Dl~ 53 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEI---LRLADLSPLDP-------------------------AGPNEECVQCDLA 53 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEE---EEEEESSCCCC-------------------------CCTTEEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCE---EEEEecCCccc-------------------------cCCCCEEEEcCCC
Confidence 4689999999999999999999999865 89999986542 2257899999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC---cccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE---KVLY 257 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~---~~i~ 257 (614)
+++ ++..+++++|+|||+||... ..+++..+++|+.||.+++++|++ .+.+++||+||..+++.. ..++
T Consensus 54 d~~------~~~~~~~~~D~vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~-~~~~~iv~~SS~~~~g~~~~~~~~~ 125 (267)
T 3rft_A 54 DAN------AVNAMVAGCDGIVHLGGISV-EKPFEQILQGNIIGLYNLYEAARA-HGQPRIVFASSNHTIGYYPQTERLG 125 (267)
T ss_dssp CHH------HHHHHHTTCSEEEECCSCCS-CCCHHHHHHHHTHHHHHHHHHHHH-TTCCEEEEEEEGGGGTTSBTTSCBC
T ss_pred CHH------HHHHHHcCCCEEEECCCCcC-cCCHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcchHHhCCCCCCCCCC
Confidence 865 89999999999999999853 456788899999999999999999 488999999999776432 2455
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCcc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~g 336 (614)
|+....| .+.|+.||+.+|.+++.+.. .|++++++||+.|+|+.
T Consensus 126 e~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~------ 170 (267)
T 3rft_A 126 PDVPARP-----------------------------DGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEP------ 170 (267)
T ss_dssp TTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSC------
T ss_pred CCCCCCC-----------------------------CChHHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCC------
Confidence 5533222 27899999999999988765 69999999999998752
Q ss_pred ccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHH
Q psy6053 337 WTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIG 416 (614)
Q Consensus 337 w~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~ 416 (614)
.+++...++++++|+++++..++..... ...++++.++ ++.+|.++...
T Consensus 171 ------------------------~~~~~~~~~~~~~d~a~~~~~~~~~~~~----~~~~~~~~s~--~~~~~~~~~~~- 219 (267)
T 3rft_A 171 ------------------------NNYRMLSTWFSHDDFVSLIEAVFRAPVL----GCPVVWGASA--NDAGWWDNSHL- 219 (267)
T ss_dssp ------------------------CSTTHHHHBCCHHHHHHHHHHHHHCSCC----CSCEEEECCC--CTTCCBCCGGG-
T ss_pred ------------------------CCCCceeeEEcHHHHHHHHHHHHhCCCC----CceEEEEeCC--CCCCcccChhH-
Confidence 2345567899999999999888876542 4567888877 66777665332
Q ss_pred hhhcccc
Q psy6053 417 KSIVTTE 423 (614)
Q Consensus 417 ~~~~g~~ 423 (614)
+.+|++
T Consensus 220 -~~~g~~ 225 (267)
T 3rft_A 220 -GFLGWK 225 (267)
T ss_dssp -GGGCCC
T ss_pred -HHCCCC
Confidence 344664
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=232.59 Aligned_cols=225 Identities=21% Similarity=0.202 Sum_probs=173.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||+|++++++|++ |++ |++++|.... . .+ +.+|++++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~---V~~~~r~~~~--------------------------~-~~---~~~Dl~~~ 46 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHE---VIKVYNSSEI--------------------------Q-GG---YKLDLTDF 46 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSC---EEEEESSSCC--------------------------T-TC---EECCTTSH
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCe---EEEecCCCcC--------------------------C-CC---ceeccCCH
Confidence 5799999999999999999995 665 8999997632 1 12 78999986
Q ss_pred CCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-cc
Q psy6053 183 ELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-VL 256 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-~i 256 (614)
+ ++..++++ +|+|||+||..... +.+...+++|+.|+.+++++|++. +. +|||+||.++++... ++
T Consensus 47 ~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~iv~~SS~~~~~~~~~~~ 118 (273)
T 2ggs_A 47 P------RLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI-DS-YIVHISTDYVFDGEKGNY 118 (273)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEEEEGGGSCSSSCSB
T ss_pred H------HHHHHHHhcCCCEEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEecceeEcCCCCCc
Confidence 5 78888876 99999999987653 456778999999999999999984 55 899999998775433 45
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~g 336 (614)
+|+..+.| .+.|+.||+.+|++++. ++++++||+.|||+ .
T Consensus 119 ~e~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~-----~~~~~iR~~~v~G~--~---- 158 (273)
T 2ggs_A 119 KEEDIPNP-----------------------------INYYGLSKLLGETFALQ-----DDSLIIRTSGIFRN--K---- 158 (273)
T ss_dssp CTTSCCCC-----------------------------SSHHHHHHHHHHHHHCC-----TTCEEEEECCCBSS--S----
T ss_pred CCCCCCCC-----------------------------CCHHHHHHHHHHHHHhC-----CCeEEEeccccccc--c----
Confidence 55533222 27899999999999876 67899999999972 1
Q ss_pred ccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHH
Q psy6053 337 WTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIG 416 (614)
Q Consensus 337 w~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~ 416 (614)
+ ....++.....|......++ ..++++++|+|++++.++.+. ..++||+++ +++|+.|+++.+
T Consensus 159 ---~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~------~~g~~~i~~---~~~s~~e~~~~~ 221 (273)
T 2ggs_A 159 ---G--FPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLELR------KTGIIHVAG---ERISRFELALKI 221 (273)
T ss_dssp ---S--HHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHT------CCEEEECCC---CCEEHHHHHHHH
T ss_pred ---H--HHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcC------cCCeEEECC---CcccHHHHHHHH
Confidence 1 11223344455554444433 789999999999999998764 245999986 479999999999
Q ss_pred hhhcccccCC
Q psy6053 417 KSIVTTEVPL 426 (614)
Q Consensus 417 ~~~~g~~~p~ 426 (614)
.+.+|.+.+.
T Consensus 222 ~~~~g~~~~~ 231 (273)
T 2ggs_A 222 KEKFNLPGEV 231 (273)
T ss_dssp HHHTTCCSCE
T ss_pred HHHhCCChhh
Confidence 9998887543
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-27 Score=237.78 Aligned_cols=219 Identities=17% Similarity=0.118 Sum_probs=173.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|||||||||||++|+++|++.|++ |+++.|..... ...++.++.+|+++
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~-------------------------~~~~~~~~~~Dl~d 53 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHE---VRLSDIVDLGA-------------------------AEAHEEIVACDLAD 53 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEE---EEECCSSCCCC-------------------------CCTTEEECCCCTTC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCE---EEEEeCCCccc-------------------------cCCCccEEEccCCC
Confidence 368999999999999999999999855 99999976431 11357889999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCC---ccccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE---KVLYE 258 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~---~~i~E 258 (614)
++ .+..+++++|+|||+||... ..++...+++|+.|+.+++++|++ .++++|||+||..+++.. .+++|
T Consensus 54 ~~------~~~~~~~~~d~vi~~a~~~~-~~~~~~~~~~n~~~~~~l~~a~~~-~~~~~iv~~SS~~~~~~~~~~~~~~E 125 (267)
T 3ay3_A 54 AQ------AVHDLVKDCDGIIHLGGVSV-ERPWNDILQANIIGAYNLYEAARN-LGKPRIVFASSNHTIGYYPRTTRIDT 125 (267)
T ss_dssp HH------HHHHHHTTCSEEEECCSCCS-CCCHHHHHHHTHHHHHHHHHHHHH-TTCCEEEEEEEGGGSTTSBTTSCBCT
T ss_pred HH------HHHHHHcCCCEEEECCcCCC-CCCHHHHHHHHHHHHHHHHHHHHH-hCCCEEEEeCCHHHhCCCCCCCCCCC
Confidence 65 78899999999999999763 344577889999999999999999 488999999999876542 24566
Q ss_pred ccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCccc
Q psy6053 259 KPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPGW 337 (614)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~gw 337 (614)
+..+.| .+.|+.||+.+|++++.+.. .|++++++||+.+|+. |.
T Consensus 126 ~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~---~~--- 170 (267)
T 3ay3_A 126 EVPRRP-----------------------------DSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPK---PK--- 170 (267)
T ss_dssp TSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHTTCCCEEEEEECBCSSS---CC---
T ss_pred CCCCCC-----------------------------CChHHHHHHHHHHHHHHHHHHcCCCEEEEeceeecCC---CC---
Confidence 533222 27899999999999988765 6999999999999842 10
Q ss_pred cCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHh
Q psy6053 338 TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGK 417 (614)
Q Consensus 338 ~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~ 417 (614)
+++...++++++|+|++++.++..+.. ...+||+.++ .+.+|.++.+.
T Consensus 171 ------------------------~~~~~~~~~~~~dva~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~d~~~~-- 218 (267)
T 3ay3_A 171 ------------------------DARMMATWLSVDDFMRLMKRAFVAPKL----GCTVVYGASA--NTESWWDNDKS-- 218 (267)
T ss_dssp ------------------------SHHHHHHBCCHHHHHHHHHHHHHSSCC----CEEEEEECCS--CSSCCBCCGGG--
T ss_pred ------------------------CCCeeeccccHHHHHHHHHHHHhCCCC----CceeEecCCC--ccccccCHHHH--
Confidence 122356899999999999998876431 3578999887 67888888777
Q ss_pred hhcccc
Q psy6053 418 SIVTTE 423 (614)
Q Consensus 418 ~~~g~~ 423 (614)
+.+|.+
T Consensus 219 ~~lg~~ 224 (267)
T 3ay3_A 219 AFLGWV 224 (267)
T ss_dssp GGGCCC
T ss_pred HHcCCC
Confidence 555765
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-27 Score=231.09 Aligned_cols=209 Identities=15% Similarity=0.192 Sum_probs=165.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC-
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA- 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~- 181 (614)
|+|||||||||+|++++++|+++|++ |++++|+..... ...+++++.+|+++
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~---V~~~~R~~~~~~------------------------~~~~~~~~~~D~~d~ 53 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQ---IYAGARKVEQVP------------------------QYNNVKAVHFDVDWT 53 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCE---EEEEESSGGGSC------------------------CCTTEEEEECCTTSC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCccchh------------------------hcCCceEEEecccCC
Confidence 58999999999999999999999865 999999854211 22579999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPY 261 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~ 261 (614)
++ ++.++++++|+|||+||... ...+++|+.|+.+++++|++ .++++|||+||.++.... +..|.
T Consensus 54 ~~------~~~~~~~~~d~vi~~ag~~~-----~~~~~~n~~~~~~l~~a~~~-~~~~~iv~~SS~~~~~~~-~~~e~-- 118 (219)
T 3dqp_A 54 PE------EMAKQLHGMDAIINVSGSGG-----KSLLKVDLYGAVKLMQAAEK-AEVKRFILLSTIFSLQPE-KWIGA-- 118 (219)
T ss_dssp HH------HHHTTTTTCSEEEECCCCTT-----SSCCCCCCHHHHHHHHHHHH-TTCCEEEEECCTTTTCGG-GCCSH--
T ss_pred HH------HHHHHHcCCCEEEECCcCCC-----CCcEeEeHHHHHHHHHHHHH-hCCCEEEEECcccccCCC-ccccc--
Confidence 54 88999999999999999865 23678899999999999999 488999999998775432 11110
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~ 341 (614)
...| .+.|+.+|+.+|++++ ...|++++++||+.++|+...
T Consensus 119 ----------------------~~~~------~~~Y~~sK~~~e~~~~--~~~~i~~~ilrp~~v~g~~~~--------- 159 (219)
T 3dqp_A 119 ----------------------GFDA------LKDYYIAKHFADLYLT--KETNLDYTIIQPGALTEEEAT--------- 159 (219)
T ss_dssp ----------------------HHHH------THHHHHHHHHHHHHHH--HSCCCEEEEEEECSEECSCCC---------
T ss_pred ----------------------cccc------ccHHHHHHHHHHHHHH--hccCCcEEEEeCceEecCCCC---------
Confidence 0111 2689999999999996 224999999999999997432
Q ss_pred CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 342 NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 342 ~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
|... .++...++++++|+|++++.++.++.. .+++||++++ + .+++|+.+.
T Consensus 160 ------------~~~~----~~~~~~~~i~~~Dva~~i~~~l~~~~~----~g~~~~i~~g--~-~~~~e~~~~ 210 (219)
T 3dqp_A 160 ------------GLID----INDEVSASNTIGDVADTIKELVMTDHS----IGKVISMHNG--K-TAIKEALES 210 (219)
T ss_dssp ------------SEEE----ESSSCCCCEEHHHHHHHHHHHHTCGGG----TTEEEEEEEC--S-EEHHHHHHT
T ss_pred ------------Cccc----cCCCcCCcccHHHHHHHHHHHHhCccc----cCcEEEeCCC--C-ccHHHHHHH
Confidence 1111 136778999999999999999987653 5889999887 4 899888764
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=242.25 Aligned_cols=237 Identities=16% Similarity=0.126 Sum_probs=175.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+.+|+|||||||||+|++|++.|++.|++ |++++|+..... ..++++++ ...+++++.||
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~---V~~l~R~~~~~~~~~~~~~~l----------------~~~~v~~~~~D 68 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRP---TYILARPGPRSPSKAKIFKAL----------------EDKGAIIVYGL 68 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCC---EEEEECSSCCCHHHHHHHHHH----------------HHTTCEEEECC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCC---EEEEECCCCCChhHHHHHHHH----------------HhCCcEEEEee
Confidence 34678999999999999999999999876 999999874322 12222222 22578999999
Q ss_pred CCCCCCCCCHHHHHHHhc--cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccc
Q psy6053 179 AEADELAIKESDRQLLAS--EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVL 256 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i 256 (614)
+++++ ++..+++ ++|+|||+||.. |+.++.+++++|++.+.+++||+ | .++. ..
T Consensus 69 l~d~~------~l~~~~~~~~~d~Vi~~a~~~------------n~~~~~~l~~aa~~~g~v~~~v~-S-~~g~----~~ 124 (346)
T 3i6i_A 69 INEQE------AMEKILKEHEIDIVVSTVGGE------------SILDQIALVKAMKAVGTIKRFLP-S-EFGH----DV 124 (346)
T ss_dssp TTCHH------HHHHHHHHTTCCEEEECCCGG------------GGGGHHHHHHHHHHHCCCSEEEC-S-CCSS----CT
T ss_pred cCCHH------HHHHHHhhCCCCEEEECCchh------------hHHHHHHHHHHHHHcCCceEEee-c-ccCC----CC
Confidence 99865 8999999 999999999973 88999999999999633999986 4 3321 12
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~g 336 (614)
+|.....| .+.|+.+|+.+|+++++. |++++++|||.++|......
T Consensus 125 ~e~~~~~p-----------------------------~~~y~~sK~~~e~~l~~~---g~~~tivrpg~~~g~~~~~~-- 170 (346)
T 3i6i_A 125 NRADPVEP-----------------------------GLNMYREKRRVRQLVEES---GIPFTYICCNSIASWPYYNN-- 170 (346)
T ss_dssp TTCCCCTT-----------------------------HHHHHHHHHHHHHHHHHT---TCCBEEEECCEESSCCCSCC--
T ss_pred CccCcCCC-----------------------------cchHHHHHHHHHHHHHHc---CCCEEEEEecccccccCccc--
Confidence 23211111 168999999999999874 89999999999999643211
Q ss_pred ccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHH
Q psy6053 337 WTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIG 416 (614)
Q Consensus 337 w~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~ 416 (614)
..+ ......+....++++++..+++++++|+|++++.++.++.. .+++||++++ .+++|+.|+++.+
T Consensus 171 -----~~~---~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~i~g~-~~~~s~~e~~~~~ 237 (346)
T 3i6i_A 171 -----IHP---SEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRT----LNKSVHFRPS-CNCLNINELASVW 237 (346)
T ss_dssp -------------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGG----TTEEEECCCG-GGEECHHHHHHHH
T ss_pred -----ccc---ccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccc----cCeEEEEeCC-CCCCCHHHHHHHH
Confidence 111 00112333345678899999999999999999999987643 5778998742 1789999999999
Q ss_pred hhhcccccCC
Q psy6053 417 KSIVTTEVPL 426 (614)
Q Consensus 417 ~~~~g~~~p~ 426 (614)
.+.+|.+.+.
T Consensus 238 ~~~~g~~~~~ 247 (346)
T 3i6i_A 238 EKKIGRTLPR 247 (346)
T ss_dssp HHHHTSCCCE
T ss_pred HHHHCCCCce
Confidence 9998986544
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=229.69 Aligned_cols=217 Identities=13% Similarity=0.138 Sum_probs=167.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeE-EEEeC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKV-LPISG 177 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v-~~v~g 177 (614)
.+++|+|||||||||+|++++++|+++|++ |++++|+... ++++ ...++ +++.+
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~---V~~~~R~~~~------~~~~----------------~~~~~~~~~~~ 72 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNKGHE---PVAMVRNEEQ------GPEL----------------RERGASDIVVA 72 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSGGG------HHHH----------------HHTTCSEEEEC
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhCCCe---EEEEECChHH------HHHH----------------HhCCCceEEEc
Confidence 367899999999999999999999999875 9999997542 1111 11367 89999
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccc
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLY 257 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~ 257 (614)
|++ + ++.+.++++|+|||+||.... ..++..+++|+.|+.+++++|++. ++++||++||..+...
T Consensus 73 Dl~--~------~~~~~~~~~D~vi~~ag~~~~-~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~----- 137 (236)
T 3e8x_A 73 NLE--E------DFSHAFASIDAVVFAAGSGPH-TGADKTILIDLWGAIKTIQEAEKR-GIKRFIMVSSVGTVDP----- 137 (236)
T ss_dssp CTT--S------CCGGGGTTCSEEEECCCCCTT-SCHHHHHHTTTHHHHHHHHHHHHH-TCCEEEEECCTTCSCG-----
T ss_pred ccH--H------HHHHHHcCCCEEEECCCCCCC-CCccccchhhHHHHHHHHHHHHHc-CCCEEEEEecCCCCCC-----
Confidence 999 2 466777899999999997653 456778899999999999999995 7899999999644321
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGW 337 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw 337 (614)
|... ...+.|+.||+.+|+++++. |++++++|||.|+|+...
T Consensus 138 ~~~~------------------------------~~~~~Y~~sK~~~e~~~~~~---gi~~~~lrpg~v~~~~~~----- 179 (236)
T 3e8x_A 138 DQGP------------------------------MNMRHYLVAKRLADDELKRS---SLDYTIVRPGPLSNEEST----- 179 (236)
T ss_dssp GGSC------------------------------GGGHHHHHHHHHHHHHHHHS---SSEEEEEEECSEECSCCC-----
T ss_pred CCCh------------------------------hhhhhHHHHHHHHHHHHHHC---CCCEEEEeCCcccCCCCC-----
Confidence 1100 00268999999999998843 999999999999997432
Q ss_pred cCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHh
Q psy6053 338 TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGK 417 (614)
Q Consensus 338 ~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~ 417 (614)
+... ...+.+...++++++|+|++++.++.++.. .+++||++++ +.+++|+++.+.
T Consensus 180 ----------------~~~~-~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~----~g~~~~v~~~---~~~~~e~~~~i~ 235 (236)
T 3e8x_A 180 ----------------GKVT-VSPHFSEITRSITRHDVAKVIAELVDQQHT----IGKTFEVLNG---DTPIAKVVEQLG 235 (236)
T ss_dssp ----------------SEEE-EESSCSCCCCCEEHHHHHHHHHHHTTCGGG----TTEEEEEEEC---SEEHHHHHHTC-
T ss_pred ----------------CeEE-eccCCCcccCcEeHHHHHHHHHHHhcCccc----cCCeEEEeCC---CcCHHHHHHHhc
Confidence 1111 223455578999999999999999977643 6889999987 389999988654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=227.45 Aligned_cols=218 Identities=14% Similarity=0.119 Sum_probs=166.8
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+|||||||||+|++++++|++. |++ |++++|+...... + ...+++++.+|+++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~---V~~~~R~~~~~~~---------------~-------~~~~v~~~~~D~~d 55 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDH---FHIGVRNVEKVPD---------------D-------WRGKVSVRQLDYFN 55 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTT---EEEEESSGGGSCG---------------G-------GBTTBEEEECCTTC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCc---EEEEECCHHHHHH---------------h-------hhCCCEEEEcCCCC
Confidence 57999999999999999999887 776 8999997643210 0 23578999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPY 261 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~ 261 (614)
++ ++..+++++|+|||+|+..... ..|+.++++++++|++ .++++|||+||..... .
T Consensus 56 ~~------~l~~~~~~~d~vi~~a~~~~~~-------~~~~~~~~~l~~aa~~-~gv~~iv~~Ss~~~~~-------~-- 112 (289)
T 3e48_A 56 QE------SMVEAFKGMDTVVFIPSIIHPS-------FKRIPEVENLVYAAKQ-SGVAHIIFIGYYADQH-------N-- 112 (289)
T ss_dssp HH------HHHHHTTTCSEEEECCCCCCSH-------HHHHHHHHHHHHHHHH-TTCCEEEEEEESCCST-------T--
T ss_pred HH------HHHHHHhCCCEEEEeCCCCccc-------hhhHHHHHHHHHHHHH-cCCCEEEEEcccCCCC-------C--
Confidence 65 8999999999999999976533 3489999999999999 4899999999954211 0
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhh--HHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYT--KCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTD 339 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~S--K~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d 339 (614)
++|..+ +..+|+.+.+. |++++++|||.++|+..
T Consensus 113 ---------------------------------~~~~~~~~~~~~e~~~~~~---g~~~~ilrp~~~~~~~~-------- 148 (289)
T 3e48_A 113 ---------------------------------NPFHMSPYFGYASRLLSTS---GIDYTYVRMAMYMDPLK-------- 148 (289)
T ss_dssp ---------------------------------CCSTTHHHHHHHHHHHHHH---CCEEEEEEECEESTTHH--------
T ss_pred ---------------------------------CCCccchhHHHHHHHHHHc---CCCEEEEeccccccccH--------
Confidence 122222 33566666654 99999999999988521
Q ss_pred CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhh
Q psy6053 340 NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 340 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
..+.....+.. ...+.++...++++++|+|++++.++.++.. .+++||++ + +++|+.|+++.+.+.
T Consensus 149 ------~~~~~~~~~~~-~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~----~g~~~~~~-~--~~~s~~e~~~~~~~~ 214 (289)
T 3e48_A 149 ------PYLPELMNMHK-LIYPAGDGRINYITRNDIARGVIAIIKNPDT----WGKRYLLS-G--YSYDMKELAAILSEA 214 (289)
T ss_dssp ------HHHHHHHHHTE-ECCCCTTCEEEEECHHHHHHHHHHHHHCGGG----TTCEEEEC-C--EEEEHHHHHHHHHHH
T ss_pred ------HHHHHHHHCCC-EecCCCCceeeeEEHHHHHHHHHHHHcCCCc----CCceEEeC-C--CcCCHHHHHHHHHHH
Confidence 12222222211 2345678899999999999999999987653 47899999 8 899999999999999
Q ss_pred cccccCC
Q psy6053 420 VTTEVPL 426 (614)
Q Consensus 420 ~g~~~p~ 426 (614)
+|.+.+.
T Consensus 215 ~g~~~~~ 221 (289)
T 3e48_A 215 SGTEIKY 221 (289)
T ss_dssp HTSCCEE
T ss_pred HCCceeE
Confidence 9986543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-25 Score=216.66 Aligned_cols=215 Identities=11% Similarity=0.052 Sum_probs=152.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||+|++++++|+++|++ |++++|+.. ++.++ ...+++++.+|++++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~---V~~~~R~~~------~~~~~----------------~~~~~~~~~~D~~d~ 55 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHE---VLAVVRDPQ------KAADR----------------LGATVATLVKEPLVL 55 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHH----------------TCTTSEEEECCGGGC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCE---EEEEEeccc------ccccc----------------cCCCceEEecccccc
Confidence 57999999999999999999999875 999999742 22222 225789999999998
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-----ccc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-----VLY 257 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-----~i~ 257 (614)
+ + ..++++|+|||+||..... .....|+.++++++++|++. + +++|++||+.+..... ..+
T Consensus 56 ~------~--~~~~~~d~vi~~ag~~~~~----~~~~~n~~~~~~l~~a~~~~-~-~~~v~~SS~~~~~~~~~~~~~~~~ 121 (224)
T 3h2s_A 56 T------E--ADLDSVDAVVDALSVPWGS----GRGYLHLDFATHLVSLLRNS-D-TLAVFILGSASLAMPGADHPMILD 121 (224)
T ss_dssp C------H--HHHTTCSEEEECCCCCTTS----SCTHHHHHHHHHHHHTCTTC-C-CEEEEECCGGGSBCTTCSSCGGGG
T ss_pred c------H--hhcccCCEEEECCccCCCc----chhhHHHHHHHHHHHHHHHc-C-CcEEEEecceeeccCCCCcccccc
Confidence 7 3 6678999999999986211 12467999999999999995 6 9999999985433221 122
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh-hCCCCEEEeecceeecccCCCCcc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM-NNGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~-~~glp~~IvRp~~I~g~~~~p~~g 336 (614)
|...+. ..+.|+.+|+.+|.+ .... ..+++++++||+.++|+.. ..+
T Consensus 122 ~~~~~~-----------------------------~~~~y~~sK~~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~--~~~ 169 (224)
T 3h2s_A 122 FPESAA-----------------------------SQPWYDGALYQYYEY-QFLQMNANVNWIGISPSEAFPSGP--ATS 169 (224)
T ss_dssp CCGGGG-----------------------------GSTTHHHHHHHHHHH-HHHTTCTTSCEEEEEECSBCCCCC--CCC
T ss_pred CCCCCc-----------------------------cchhhHHHHHHHHHH-HHHHhcCCCcEEEEcCccccCCCc--ccC
Confidence 211111 126899999999965 3343 3699999999999999832 111
Q ss_pred ccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 337 WTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 337 w~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
+.. .... ...+....++++++|+|++++.++.++.. .+++|++++. ++.++.
T Consensus 170 ~~~------------~~~~----~~~~~~~~~~i~~~DvA~~~~~~l~~~~~----~g~~~~~~~~--~~~~~~ 221 (224)
T 3h2s_A 170 YVA------------GKDT----LLVGEDGQSHITTGNMALAILDQLEHPTA----IRDRIVVRDA--DLEHHH 221 (224)
T ss_dssp EEE------------ESSB----CCCCTTSCCBCCHHHHHHHHHHHHHSCCC----TTSEEEEEEC--C-----
T ss_pred cee------------cccc----cccCCCCCceEeHHHHHHHHHHHhcCccc----cCCEEEEecC--cchhcc
Confidence 110 0111 11234557899999999999999987653 6889999987 544443
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-25 Score=221.71 Aligned_cols=231 Identities=14% Similarity=0.075 Sum_probs=168.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhh--CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRK--SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~--g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
++|+|||||||||+|++++++|++. |++ |+++.|+.. ++++ ...++.++.+|
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~---V~~~~r~~~------~~~~-----------------~~~~~~~~~~D 56 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFV---AKGLVRSAQ------GKEK-----------------IGGEADVFIGD 56 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCE---EEEEESCHH------HHHH-----------------TTCCTTEEECC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcE---EEEEEcCCC------chhh-----------------cCCCeeEEEec
Confidence 4789999999999999999999999 544 899999631 2211 12356789999
Q ss_pred CCCCCCCCCHHHHHHHhccccEEEEcccccChh----------------HHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 179 AEADELAIKESDRQLLASEVDIMIHGAATIRFD----------------EALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~----------------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
+++++ ++.++++++|+|||+||..... +......++|+.++.+++++|++. ++++||
T Consensus 57 ~~d~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv 129 (253)
T 1xq6_A 57 ITDAD------SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIV 129 (253)
T ss_dssp TTSHH------HHHHHHTTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEE
T ss_pred CCCHH------HHHHHHcCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-CCCEEE
Confidence 99865 8999999999999999965321 111245789999999999999995 789999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEee
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLR 322 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvR 322 (614)
++||..+.....+ ..+. ..+.|+.+|+.+|.++++ .|++++++|
T Consensus 130 ~~SS~~~~~~~~~---------~~~~------------------------~~~~y~~sK~~~e~~~~~---~~i~~~~vr 173 (253)
T 1xq6_A 130 VVGSMGGTNPDHP---------LNKL------------------------GNGNILVWKRKAEQYLAD---SGTPYTIIR 173 (253)
T ss_dssp EEEETTTTCTTCG---------GGGG------------------------GGCCHHHHHHHHHHHHHT---SSSCEEEEE
T ss_pred EEcCccCCCCCCc---------cccc------------------------cchhHHHHHHHHHHHHHh---CCCceEEEe
Confidence 9999976421111 0000 014688899999999876 399999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
||.++|+..... ... .+....+++ ...++++++|+|++++.++.++.. .+++||++++
T Consensus 174 pg~v~~~~~~~~-~~~--------------~~~~~~~~~---~~~~~~~~~Dva~~~~~~~~~~~~----~g~~~~i~~~ 231 (253)
T 1xq6_A 174 AGGLLDKEGGVR-ELL--------------VGKDDELLQ---TDTKTVPRADVAEVCIQALLFEEA----KNKAFDLGSK 231 (253)
T ss_dssp ECEEECSCSSSS-CEE--------------EESTTGGGG---SSCCEEEHHHHHHHHHHHTTCGGG----TTEEEEEEEC
T ss_pred cceeecCCcchh-hhh--------------ccCCcCCcC---CCCcEEcHHHHHHHHHHHHcCccc----cCCEEEecCC
Confidence 999999864210 000 000000111 134689999999999999876542 5789999987
Q ss_pred Cc-ccccHHHHHHHHhhhccc
Q psy6053 403 QE-WQVSWQEIIDIGKSIVTT 422 (614)
Q Consensus 403 ~~-~~it~~e~~~~~~~~~g~ 422 (614)
.. +++++.|+++.+.+.+|+
T Consensus 232 ~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 232 PEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp CTTTSCCCCCHHHHHHTCCCC
T ss_pred CcCCCCCHHHHHHHHHHHhCC
Confidence 32 469999999999998775
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=210.84 Aligned_cols=216 Identities=11% Similarity=0.052 Sum_probs=142.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||+|++++++|+++|++ |++++|+.. ++.++ . .+++++.+|++++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~---V~~~~R~~~------~~~~~----------------~-~~~~~~~~D~~d~ 54 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHE---VTAIVRNAG------KITQT----------------H-KDINILQKDIFDL 54 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCSH------HHHHH----------------C-SSSEEEECCGGGC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCE---EEEEEcCch------hhhhc----------------c-CCCeEEeccccCh
Confidence 57999999999999999999999865 999999752 12211 2 5689999999998
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc---ccccc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK---VLYEK 259 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~---~i~E~ 259 (614)
+ . +.++++|+|||+||.... ....|+.++++++++|++. +.+++|++||..+..... ...|+
T Consensus 55 ~------~--~~~~~~d~vi~~ag~~~~------~~~~~~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~ 119 (221)
T 3ew7_A 55 T------L--SDLSDQNVVVDAYGISPD------EAEKHVTSLDHLISVLNGT-VSPRLLVVGGAASLQIDEDGNTLLES 119 (221)
T ss_dssp C------H--HHHTTCSEEEECCCSSTT------TTTSHHHHHHHHHHHHCSC-CSSEEEEECCCC--------------
T ss_pred h------h--hhhcCCCEEEECCcCCcc------ccchHHHHHHHHHHHHHhc-CCceEEEEecceEEEcCCCCcccccc
Confidence 7 3 667899999999998532 2467999999999999994 789999999986543221 12221
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh-hCCCCEEEeecceeecccCCCCcccc
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM-NNGMPCLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~-~~glp~~IvRp~~I~g~~~~p~~gw~ 338 (614)
..+ ...+.|+.+|..+|.+..-.. ..|++++++||+.++|+.. ..+.
T Consensus 120 ~~~-----------------------------~~~~~y~~~k~~~e~~~~~~~~~~gi~~~ivrp~~v~g~~~--~~~~- 167 (221)
T 3ew7_A 120 KGL-----------------------------REAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGE--RTGD- 167 (221)
T ss_dssp ----------------------------------CCCSCCHHHHHHHHHHHHTTTTTSCEEEEECSSCCCCC--------
T ss_pred CCC-----------------------------CCHHHHHHHHHHHHHHHHHHhhccCccEEEEeCcceecCCC--ccCc-
Confidence 110 012679999999999733332 3599999999999999722 1110
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
+. .. +......+++ .++++++|+|++++.++.++.. .+++||++++ ++.+.+|
T Consensus 168 ---------~~-~~-~~~~~~~~~~---~~~i~~~Dva~~~~~~l~~~~~----~g~~~~~~~~--~~~~~~~ 220 (221)
T 3ew7_A 168 ---------YQ-IG-KDHLLFGSDG---NSFISMEDYAIAVLDEIERPNH----LNEHFTVAGK--LEHHHHH 220 (221)
T ss_dssp ------------------------------CCCHHHHHHHHHHHHHSCSC----TTSEEECCC----------
T ss_pred ---------eE-ec-cccceecCCC---CceEeHHHHHHHHHHHHhCccc----cCCEEEECCC--Ccccccc
Confidence 00 01 1111112222 3689999999999999987653 6899999998 6656544
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-25 Score=216.04 Aligned_cols=208 Identities=15% Similarity=0.092 Sum_probs=158.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|+|||||||+|++++++|+++|+. .+|++++|+... ...+++++.+|++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~-~~V~~~~r~~~~--------------------------~~~~~~~~~~D~~ 56 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTL-AKVIAPARKALA--------------------------EHPRLDNPVGPLA 56 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTC-CEEECCBSSCCC--------------------------CCTTEECCBSCHH
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCC-CeEEEEeCCCcc--------------------------cCCCceEEecccc
Confidence 3589999999999999999999999861 249999997643 1146788899998
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEK 259 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~ 259 (614)
+++ ++.+++ +|+|||+|+.... ..+.+..+++|+.++.+++++|++. ++++|||+||..+++.
T Consensus 57 ~~~------~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~------- 120 (215)
T 2a35_A 57 ELL------PQLDGS--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAK------- 120 (215)
T ss_dssp HHG------GGCCSC--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTT-------
T ss_pred CHH------HHHHhh--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHc-CCCEEEEECCcccCCC-------
Confidence 765 455555 9999999997653 2456778899999999999999994 8899999999877532
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCC-EEEeecceeecccCCCCcccc
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMP-CLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp-~~IvRp~~I~g~~~~p~~gw~ 338 (614)
| ++.|+.+|+.+|+++++. |++ ++++||+.++|+...+ .+.
T Consensus 121 ----~-----------------------------~~~y~~sK~~~e~~~~~~---~~~~~~~vrp~~v~g~~~~~--~~~ 162 (215)
T 2a35_A 121 ----S-----------------------------SIFYNRVKGELEQALQEQ---GWPQLTIARPSLLFGPREEF--RLA 162 (215)
T ss_dssp ----C-----------------------------SSHHHHHHHHHHHHHTTS---CCSEEEEEECCSEESTTSCE--EGG
T ss_pred ----C-----------------------------ccHHHHHHHHHHHHHHHc---CCCeEEEEeCceeeCCCCcc--hHH
Confidence 1 268999999999999875 899 9999999999986541 222
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
..+ . +....+ ++ ...++++++|+|++++.++.++ .+++||++++ +++++.+
T Consensus 163 ~~~----------~-~~~~~~-~~--~~~~~i~~~Dva~~~~~~~~~~------~~~~~~i~~~--~~~~~~~ 213 (215)
T 2a35_A 163 EIL----------A-APIARI-LP--GKYHGIEACDLARALWRLALEE------GKGVRFVESD--ELRKLGK 213 (215)
T ss_dssp GGT----------T-CCCC-------CHHHHHHHHHHHHHHHHHHTCC------CSEEEEEEHH--HHHHHHH
T ss_pred HHH----------H-Hhhhhc-cC--CCcCcEeHHHHHHHHHHHHhcC------CCCceEEcHH--HHHHhhc
Confidence 111 1 111111 22 3779999999999999988653 3679999988 6666643
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=212.85 Aligned_cols=212 Identities=19% Similarity=0.134 Sum_probs=157.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+|||||||||++++++|++.|+. .+|++++|+....... ...++.++.+|+
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~-~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~D~ 72 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLF-SKVTLIGRRKLTFDEE----------------------AYKNVNQEVVDF 72 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCC-SEEEEEESSCCCCCSG----------------------GGGGCEEEECCG
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCC-CEEEEEEcCCCCcccc----------------------ccCCceEEecCc
Confidence 45789999999999999999999999871 1489999986542100 123678899999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEK 259 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~ 259 (614)
++++ +++.+++++|+|||+||........+..+++|+.|+.+++++|++ .+.++||++||.+++...
T Consensus 73 ~d~~------~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~iv~~SS~~~~~~~------ 139 (242)
T 2bka_A 73 EKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKA-GGCKHFNLLSSKGADKSS------ 139 (242)
T ss_dssp GGGG------GGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHH-TTCCEEEEECCTTCCTTC------
T ss_pred CCHH------HHHHHhcCCCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHH-CCCCEEEEEccCcCCCCC------
Confidence 9876 788888999999999998766666678899999999999999999 478999999999775420
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCC-CEEEeecceeecccCCCCcccc
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGM-PCLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~gl-p~~IvRp~~I~g~~~~p~~gw~ 338 (614)
++.|+.||+.+|++++.. ++ +++++|||.|+|+...+
T Consensus 140 ----------------------------------~~~Y~~sK~~~e~~~~~~---~~~~~~~vrpg~v~~~~~~~----- 177 (242)
T 2bka_A 140 ----------------------------------NFLYLQVKGEVEAKVEEL---KFDRYSVFRPGVLLCDRQES----- 177 (242)
T ss_dssp ----------------------------------SSHHHHHHHHHHHHHHTT---CCSEEEEEECCEEECTTGGG-----
T ss_pred ----------------------------------cchHHHHHHHHHHHHHhc---CCCCeEEEcCceecCCCCCC-----
Confidence 268999999999999876 78 59999999999985421
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.....+...... .... ......+++++|+|++++.++.++. ..+.|++.++
T Consensus 178 ---~~~~~~~~~~~~-~~~~----~~~~~~~~~~~dva~~~~~~~~~~~-----~~~~~~~~~~ 228 (242)
T 2bka_A 178 ---RPGEWLVRKFFG-SLPD----SWASGHSVPVVTVVRAMLNNVVRPR-----DKQMELLENK 228 (242)
T ss_dssp ---SHHHHHHHHHHC-SCCT----TGGGGTEEEHHHHHHHHHHHHTSCC-----CSSEEEEEHH
T ss_pred ---cHHHHHHHHhhc-ccCc----cccCCcccCHHHHHHHHHHHHhCcc-----ccCeeEeeHH
Confidence 001112222221 1111 1112358999999999999986543 3456666543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=219.06 Aligned_cols=240 Identities=13% Similarity=0.114 Sum_probs=171.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH--HHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA--RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~--~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+|+|+|||||||+|++++++|++.|++ |++++|+.....+ .+.++++ ...+++++.||+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~R~~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~ 64 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPEVVSNIDKVQMLLYF----------------KQLGAKLIEASL 64 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCSCCSSCHHHHHHHHHH----------------HTTTCEEECCCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCc---EEEEECCCcccchhHHHHHHHH----------------HhCCeEEEeCCC
Confidence 478999999999999999999999876 8999998654322 1112211 124688999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCC-CceEEEEeCceeccCCccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKH-LELFVHISTAYCHLQEKVLYE 258 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~-~k~~V~vST~~~~~~~~~i~E 258 (614)
++++ ++..+++++|+|||+|+..... .|+.++.+++++|++. + +++||+ |.++..... . +
T Consensus 65 ~d~~------~l~~~~~~~d~vi~~a~~~~~~--------~~~~~~~~l~~aa~~~-g~v~~~v~--S~~g~~~~~-~-~ 125 (313)
T 1qyd_A 65 DDHQ------RLVDALKQVDVVISALAGGVLS--------HHILEQLKLVEAIKEA-GNIKRFLP--SEFGMDPDI-M-E 125 (313)
T ss_dssp SCHH------HHHHHHTTCSEEEECCCCSSSS--------TTTTTHHHHHHHHHHS-CCCSEEEC--SCCSSCTTS-C-C
T ss_pred CCHH------HHHHHHhCCCEEEECCccccch--------hhHHHHHHHHHHHHhc-CCCceEEe--cCCcCCccc-c-c
Confidence 9865 8999999999999999976532 3788999999999995 6 999986 333321111 0 0
Q ss_pred ccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcccc
Q psy6053 259 KPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~ 338 (614)
. +..| ..+.| .+|+.+|+++++. |++++++||+.++|.....+....
T Consensus 126 ~----~~~p-------------------------~~~~y-~sK~~~e~~~~~~---g~~~~ilrp~~~~~~~~~~~~~~~ 172 (313)
T 1qyd_A 126 H----ALQP-------------------------GSITF-IDKRKVRRAIEAA---SIPYTYVSSNMFAGYFAGSLAQLD 172 (313)
T ss_dssp C----CCSS-------------------------TTHHH-HHHHHHHHHHHHT---TCCBCEEECCEEHHHHTTTSSCTT
T ss_pred c----CCCC-------------------------CcchH-HHHHHHHHHHHhc---CCCeEEEEeceecccccccccccc
Confidence 0 1000 01468 9999999999764 899999999999886432111100
Q ss_pred CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhh
Q psy6053 339 DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKS 418 (614)
Q Consensus 339 d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~ 418 (614)
+ .....+....++++++...++++++|+|++++.++.++.. .+++|+++++. +++|+.|+++.+.+
T Consensus 173 ~---------~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~-~~~s~~e~~~~~~~ 238 (313)
T 1qyd_A 173 G---------HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT----LNKTMYIRPPM-NILSQKEVIQIWER 238 (313)
T ss_dssp C---------CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG----SSSEEECCCGG-GEEEHHHHHHHHHH
T ss_pred c---------cccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCccc----CCceEEEeCCC-CccCHHHHHHHHHH
Confidence 0 0001122223457788999999999999999998876542 46777776431 67999999999999
Q ss_pred hcccccCC
Q psy6053 419 IVTTEVPL 426 (614)
Q Consensus 419 ~~g~~~p~ 426 (614)
.+|.+.+.
T Consensus 239 ~~g~~~~~ 246 (313)
T 1qyd_A 239 LSEQNLDK 246 (313)
T ss_dssp HHTCCCEE
T ss_pred hcCCCCce
Confidence 99986543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=217.92 Aligned_cols=232 Identities=12% Similarity=0.049 Sum_probs=173.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+|+|||||||||+|++++++|++.| ++ |++++|+...... +.+ ...+++++.+|++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~---V~~~~R~~~~~~~-~~l-------------------~~~~~~~~~~D~~ 61 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFK---VRVVTRNPRKKAA-KEL-------------------RLQGAEVVQGDQD 61 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSE---EEEEESCTTSHHH-HHH-------------------HHTTCEEEECCTT
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCce---EEEEEcCCCCHHH-HHH-------------------HHCCCEEEEecCC
Confidence 5789999999999999999999997 55 9999998654211 111 1146789999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKP 260 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~ 260 (614)
+++ .+..+++++|+|||+|+.... ...+.|+.++++++++|++. ++++||++||..+++.. +.
T Consensus 62 d~~------~l~~~~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~~~aa~~~-gv~~iv~~S~~~~~~~~----~~- 124 (299)
T 2wm3_A 62 DQV------IMELALNGAYATFIVTNYWES-----CSQEQEVKQGKLLADLARRL-GLHYVVYSGLENIKKLT----AG- 124 (299)
T ss_dssp CHH------HHHHHHTTCSEEEECCCHHHH-----TCHHHHHHHHHHHHHHHHHH-TCSEEEECCCCCHHHHT----TT-
T ss_pred CHH------HHHHHHhcCCEEEEeCCCCcc-----ccchHHHHHHHHHHHHHHHc-CCCEEEEEcCccccccC----CC-
Confidence 865 899999999999999985321 12356899999999999994 89999998876554311 10
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCC
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN 340 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~ 340 (614)
..++.|+.+|+.+|+++++. |++++++||+.++|+... .|...
T Consensus 125 -------------------------------~~~~~y~~sK~~~e~~~~~~---gi~~~ilrp~~~~~~~~~---~~~~~ 167 (299)
T 2wm3_A 125 -------------------------------RLAAAHFDGKGEVEEYFRDI---GVPMTSVRLPCYFENLLS---HFLPQ 167 (299)
T ss_dssp -------------------------------SCCCHHHHHHHHHHHHHHHH---TCCEEEEECCEEGGGGGT---TTCCE
T ss_pred -------------------------------cccCchhhHHHHHHHHHHHC---CCCEEEEeecHHhhhchh---hcCCc
Confidence 12368999999999999875 899999999999997432 11111
Q ss_pred CCchHHHHHHHhcCce-eeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhh
Q psy6053 341 INGPTGLLIGAGKGVI-RTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 341 ~~g~~~~~~~~~~g~~-~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
. ...|.. ....+.++...++++++|+|++++.++.++.. ..+++||+++ +++|+.|+++.+.+.
T Consensus 168 ~---------~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~---~~g~~~~~~g---~~~s~~e~~~~~~~~ 232 (299)
T 2wm3_A 168 K---------APDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEK---YVGQNIGLST---CRHTAEEYAALLTKH 232 (299)
T ss_dssp E---------CTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHH---HTTCEEECCS---EEECHHHHHHHHHHH
T ss_pred c---------cCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhh---hCCeEEEeee---ccCCHHHHHHHHHHH
Confidence 0 112311 11123477889999999999999999876421 1467999975 369999999999999
Q ss_pred cccccC
Q psy6053 420 VTTEVP 425 (614)
Q Consensus 420 ~g~~~p 425 (614)
+|.+.+
T Consensus 233 ~g~~~~ 238 (299)
T 2wm3_A 233 TRKVVH 238 (299)
T ss_dssp HSSCEE
T ss_pred HCCCce
Confidence 898654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=220.18 Aligned_cols=233 Identities=15% Similarity=0.062 Sum_probs=171.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC-CC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD-AE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD-l~ 180 (614)
+|+|||||||||+|++++++|+++|++ |++++|+..... .+.+. ...+++++.+| ++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~R~~~~~~-~~~l~------------------~~~~v~~v~~D~l~ 62 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHH---VRAQVHSLKGLI-AEELQ------------------AIPNVTLFQGPLLN 62 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCC---EEEEESCSCSHH-HHHHH------------------TSTTEEEEESCCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCE---EEEEECCCChhh-HHHHh------------------hcCCcEEEECCccC
Confidence 578999999999999999999999876 899999865421 11111 12468899999 99
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCC-CceEEEEeCceeccCCcccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKH-LELFVHISTAYCHLQEKVLYEK 259 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~-~k~~V~vST~~~~~~~~~i~E~ 259 (614)
+++ ++..+++++|+|||+++.... +.|+.+ ++++++|++. + +++|||+||.++..
T Consensus 63 d~~------~l~~~~~~~d~Vi~~a~~~~~--------~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~~~~-------- 118 (352)
T 1xgk_A 63 NVP------LMDTLFEGAHLAFINTTSQAG--------DEIAIG-KDLADAAKRA-GTIQHYIYSSMPDHSL-------- 118 (352)
T ss_dssp CHH------HHHHHHTTCSEEEECCCSTTS--------CHHHHH-HHHHHHHHHH-SCCSEEEEEECCCGGG--------
T ss_pred CHH------HHHHHHhcCCEEEEcCCCCCc--------HHHHHH-HHHHHHHHHc-CCccEEEEeCCccccc--------
Confidence 865 788999999999999986421 347777 9999999995 6 89999999986311
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccC
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTD 339 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d 339 (614)
|.. ..++.|+.||+.+|+++++. |++++|+||+ +||+...... .
T Consensus 119 -~~~----------------------------~~~~~y~~sK~~~E~~~~~~---gi~~~ivrpg-~~g~~~~~~~---~ 162 (352)
T 1xgk_A 119 -YGP----------------------------WPAVPMWAPKFTVENYVRQL---GLPSTFVYAG-IYNNNFTSLP---Y 162 (352)
T ss_dssp -TSS----------------------------CCCCTTTHHHHHHHHHHHTS---SSCEEEEEEC-EEGGGCBSSS---C
T ss_pred -cCC----------------------------CCCccHHHHHHHHHHHHHHc---CCCEEEEecc-eecCCchhcc---c
Confidence 000 11378999999999999875 8999999988 5776532110 0
Q ss_pred CCCchHHHHHHHhcCcee-eEeeCCCccccceeH-HHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHh
Q psy6053 340 NINGPTGLLIGAGKGVIR-TMFCDNTGYADFLPV-DITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGK 417 (614)
Q Consensus 340 ~~~g~~~~~~~~~~g~~~-~~~~~~~~~~d~vpV-Ddva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~ 417 (614)
..... .....|... .++++++...+++++ +|+|++++.++.++.. ...+++||+++ .++|+.|+++.+.
T Consensus 163 ~~~~~----~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~--~~~g~~~~l~~---~~~s~~e~~~~i~ 233 (352)
T 1xgk_A 163 PLFQM----ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQ--KWNGHRIALTF---ETLSPVQVCAAFS 233 (352)
T ss_dssp SSCBE----EECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHH--HHTTCEEEECS---EEECHHHHHHHHH
T ss_pred ccccc----cccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCch--hhCCeEEEEec---CCCCHHHHHHHHH
Confidence 00000 001234332 345668889999999 9999999999876421 01478999994 4699999999999
Q ss_pred hhcccccC
Q psy6053 418 SIVTTEVP 425 (614)
Q Consensus 418 ~~~g~~~p 425 (614)
+.+|.+.+
T Consensus 234 ~~~G~~~~ 241 (352)
T 1xgk_A 234 RALNRRVT 241 (352)
T ss_dssp HHHTSCEE
T ss_pred HHHCCCCc
Confidence 99898654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=213.38 Aligned_cols=237 Identities=12% Similarity=0.155 Sum_probs=167.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+|||||||+|+++++.|+++|++ |++++|+.......++.+.+. .+ ...+++++.+|+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~---V~~l~R~~~~~~~~~~~~~~~------~l-------~~~~v~~v~~D~~d 67 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHP---TFLLVRESTASSNSEKAQLLE------SF-------KASGANIVHGSIDD 67 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCCCCTTTTHHHHHHHH------HH-------HTTTCEEECCCTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCC---EEEEECCcccccCHHHHHHHH------HH-------HhCCCEEEEeccCC
Confidence 578999999999999999999999876 899999865431111211110 00 12468899999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPY 261 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~ 261 (614)
++ .+..+++++|+|||+|+... +.++.+++++|++.+++++||+ | .++... +|..
T Consensus 68 ~~------~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S-~~g~~~----~~~~- 122 (308)
T 1qyc_A 68 HA------SLVEAVKNVDVVISTVGSLQ------------IESQVNIIKAIKEVGTVKRFFP-S-EFGNDV----DNVH- 122 (308)
T ss_dssp HH------HHHHHHHTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCSEEEC-S-CCSSCT----TSCC-
T ss_pred HH------HHHHHHcCCCEEEECCcchh------------hhhHHHHHHHHHhcCCCceEee-c-ccccCc----cccc-
Confidence 65 88999999999999998643 5567899999999633999984 4 333111 1110
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~ 341 (614)
+..|. .+.| .+|..+|+.+++. +++++++||+.++|.....+..+..
T Consensus 123 --~~~p~-------------------------~~~y-~sK~~~e~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~~~-- 169 (308)
T 1qyc_A 123 --AVEPA-------------------------KSVF-EVKAKVRRAIEAE---GIPYTYVSSNCFAGYFLRSLAQAGL-- 169 (308)
T ss_dssp --CCTTH-------------------------HHHH-HHHHHHHHHHHHH---TCCBEEEECCEEHHHHTTTTTCTTC--
T ss_pred --cCCcc-------------------------hhHH-HHHHHHHHHHHhc---CCCeEEEEeceeccccccccccccc--
Confidence 11110 1468 9999999999875 8999999999998864321111000
Q ss_pred CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhcc
Q psy6053 342 NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVT 421 (614)
Q Consensus 342 ~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g 421 (614)
....+....++++++...++++++|+|++++.++.++.. .+++|++.++. +.+|+.|+++.+.+.+|
T Consensus 170 --------~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~-~~~s~~e~~~~~~~~~g 236 (308)
T 1qyc_A 170 --------TAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRT----LNKTLYLRLPA-NTLSLNELVALWEKKID 236 (308)
T ss_dssp --------SSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHTT
T ss_pred --------cCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCccc----cCeEEEEeCCC-CccCHHHHHHHHHHHhC
Confidence 001222334567888999999999999999988866542 46778876431 67999999999999989
Q ss_pred cccC
Q psy6053 422 TEVP 425 (614)
Q Consensus 422 ~~~p 425 (614)
.+.+
T Consensus 237 ~~~~ 240 (308)
T 1qyc_A 237 KTLE 240 (308)
T ss_dssp SCCE
T ss_pred CCCc
Confidence 8654
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=201.32 Aligned_cols=202 Identities=12% Similarity=0.061 Sum_probs=150.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+|||||||+|++++++|++.|++ |+++.|++..... . ...+++++.+|+++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~---V~~~~r~~~~~~~---------------------~-~~~~~~~~~~D~~~ 57 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYE---VTVLVRDSSRLPS---------------------E-GPRPAHVVVGDVLQ 57 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCGGGSCS---------------------S-SCCCSEEEESCTTS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCe---EEEEEeChhhccc---------------------c-cCCceEEEEecCCC
Confidence 479999999999999999999999865 9999997532110 0 13578999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPY 261 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~ 261 (614)
++ ++.++++++|+|||+|+...... ..++|+.++.+++++|++. ++++||++||..+++.....
T Consensus 58 ~~------~~~~~~~~~d~vi~~a~~~~~~~----~~~~n~~~~~~~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~----- 121 (206)
T 1hdo_A 58 AA------DVDKTVAGQDAVIVLLGTRNDLS----PTTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPTKV----- 121 (206)
T ss_dssp HH------HHHHHHTTCSEEEECCCCTTCCS----CCCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTTCS-----
T ss_pred HH------HHHHHHcCCCEEEECccCCCCCC----ccchHHHHHHHHHHHHHHh-CCCeEEEEeeeeeccCcccc-----
Confidence 65 88999999999999999765421 1258999999999999995 88999999999776532210
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~ 341 (614)
|. ..+.|+.+|..+|+++++. +++++++||+.++.... .+..
T Consensus 122 --~~---------------------------~~~~y~~~K~~~e~~~~~~---~i~~~~lrp~~~~~~~~---~~~~--- 163 (206)
T 1hdo_A 122 --PP---------------------------RLQAVTDDHIRMHKVLRES---GLKYVAVMPPHIGDQPL---TGAY--- 163 (206)
T ss_dssp --CG---------------------------GGHHHHHHHHHHHHHHHHT---CSEEEEECCSEEECCCC---CSCC---
T ss_pred --cc---------------------------cchhHHHHHHHHHHHHHhC---CCCEEEEeCCcccCCCC---Ccce---
Confidence 00 0268999999999999653 89999999999832211 1110
Q ss_pred CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 342 NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 342 ~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.....+... .++++++|+|++++.++.++. ..+++||++++
T Consensus 164 ---------------~~~~~~~~~-~~~i~~~Dva~~~~~~~~~~~----~~g~~~~i~~g 204 (206)
T 1hdo_A 164 ---------------TVTLDGRGP-SRVISKHDLGHFMLRCLTTDE----YDGHSTYPSHQ 204 (206)
T ss_dssp ---------------EEESSSCSS-CSEEEHHHHHHHHHHTTSCST----TTTCEEEEECC
T ss_pred ---------------EecccCCCC-CCccCHHHHHHHHHHHhcCcc----ccccceeeecc
Confidence 000011111 489999999999999887643 26789999886
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=208.79 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=166.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC-CCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK-KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~-~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+|+|+|||||||+|++++++|+++|++ |++++|+. ....+.++.+.+. .+ ...+++++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~---V~~~~R~~~~~~~~~~~~~~~~------~l-------~~~~v~~v~~D~~ 65 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNP---TYALVRKTITAANPETKEELID------NY-------QSLGVILLEGDIN 65 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCC---EEEEECCSCCSSCHHHHHHHHH------HH-------HHTTCEEEECCTT
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCc---EEEEECCCcccCChHHHHHHHH------HH-------HhCCCEEEEeCCC
Confidence 578999999999999999999999976 89999986 3222202222110 00 1146889999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKP 260 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~ 260 (614)
+++ .+..+++++|+|||+|+... +.++.+++++|++.+++++||+ |.++... +|..
T Consensus 66 d~~------~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~--S~~g~~~----~~~~ 121 (307)
T 2gas_A 66 DHE------TLVKAIKQVDIVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP--SEFGLDV----DRHD 121 (307)
T ss_dssp CHH------HHHHHHTTCSEEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC--SCCSSCT----TSCC
T ss_pred CHH------HHHHHHhCCCEEEECCcccc------------cccHHHHHHHHHhcCCceEEee--cccccCc----cccc
Confidence 865 89999999999999999754 4567899999999533999983 4433211 1111
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCC
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN 340 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~ 340 (614)
+..|. .+.| .+|+.+|+++++. |++++++||+.+++.... .+...
T Consensus 122 ---~~~p~-------------------------~~~y-~sK~~~e~~~~~~---~i~~~~lrp~~~~~~~~~---~~~~~ 166 (307)
T 2gas_A 122 ---AVEPV-------------------------RQVF-EEKASIRRVIEAE---GVPYTYLCCHAFTGYFLR---NLAQL 166 (307)
T ss_dssp ---CCTTH-------------------------HHHH-HHHHHHHHHHHHH---TCCBEEEECCEETTTTGG---GTTCT
T ss_pred ---CCCcc-------------------------hhHH-HHHHHHHHHHHHc---CCCeEEEEcceeeccccc---ccccc
Confidence 11110 1478 9999999999865 899999999998875321 11100
Q ss_pred CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhc
Q psy6053 341 INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIV 420 (614)
Q Consensus 341 ~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~ 420 (614)
+ .....+....++++++...++++++|+|++++.++.++.. .+++|++.++. +.+|+.|+++.+.+.+
T Consensus 167 --~-----~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~~~~-~~~s~~e~~~~~~~~~ 234 (307)
T 2gas_A 167 --D-----ATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNT----LNKAVHIRLPK-NYLTQNEVIALWEKKI 234 (307)
T ss_dssp --T-----CSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHH
T ss_pred --c-----cccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccc----cCceEEEeCCC-CcCCHHHHHHHHHHHh
Confidence 0 0001122234567788899999999999999999876542 46677776431 5799999999999998
Q ss_pred ccccCC
Q psy6053 421 TTEVPL 426 (614)
Q Consensus 421 g~~~p~ 426 (614)
|.+.+.
T Consensus 235 g~~~~~ 240 (307)
T 2gas_A 235 GKTLEK 240 (307)
T ss_dssp TSCCEE
T ss_pred CCCCce
Confidence 986543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-23 Score=213.28 Aligned_cols=232 Identities=15% Similarity=0.123 Sum_probs=167.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC-CCcCH--HHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK-KGKNA--RQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~-~~~~~--~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.+|+|+|||||||+|++++++|+++|++ |++++|+. +.... .+.++++ ...+++++.+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~R~~~~~~~~~~~~~l~~~----------------~~~~v~~v~~ 63 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHP---TFIYARPLTPDSTPSSVQLREEF----------------RSMGVTIIEG 63 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCC---EEEEECCCCTTCCHHHHHHHHHH----------------HHTTCEEEEC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCc---EEEEECCcccccChHHHHHHHHh----------------hcCCcEEEEe
Confidence 3578999999999999999999999876 89999986 32211 1122211 1246889999
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCC-CceEEEEeCceeccCCccc
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKH-LELFVHISTAYCHLQEKVL 256 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~-~k~~V~vST~~~~~~~~~i 256 (614)
|+++++ .+..+++++|+|||+|+... +.++++++++|++. + +++||+ |.++...
T Consensus 64 D~~d~~------~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~-g~v~~~v~--S~~g~~~---- 118 (321)
T 3c1o_A 64 EMEEHE------KMVSVLKQVDIVISALPFPM------------ISSQIHIINAIKAA-GNIKRFLP--SDFGCEE---- 118 (321)
T ss_dssp CTTCHH------HHHHHHTTCSEEEECCCGGG------------SGGGHHHHHHHHHH-CCCCEEEC--SCCSSCG----
T ss_pred cCCCHH------HHHHHHcCCCEEEECCCccc------------hhhHHHHHHHHHHh-CCccEEec--cccccCc----
Confidence 999865 89999999999999998643 56789999999995 6 999983 4443211
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCcc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~g 336 (614)
+|.. +..|. .+.| .+|+.+|+++++. +++++++||+.+++....
T Consensus 119 ~~~~---~~~p~-------------------------~~~y-~sK~~~e~~~~~~---~~~~~~lrp~~~~~~~~~---- 162 (321)
T 3c1o_A 119 DRIK---PLPPF-------------------------ESVL-EKKRIIRRAIEAA---ALPYTYVSANCFGAYFVN---- 162 (321)
T ss_dssp GGCC---CCHHH-------------------------HHHH-HHHHHHHHHHHHH---TCCBEEEECCEEHHHHHH----
T ss_pred cccc---cCCCc-------------------------chHH-HHHHHHHHHHHHc---CCCeEEEEeceecccccc----
Confidence 1210 11000 1479 9999999999865 899999999998775210
Q ss_pred ccCCCCchHHHHH---HHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 337 WTDNINGPTGLLI---GAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 337 w~d~~~g~~~~~~---~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
.+.. ....+.....+++++...++++++|+|++++.++.++.. .+++|+++++. +++|+.|++
T Consensus 163 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~g~~~~~~g~~-~~~t~~e~~ 228 (321)
T 3c1o_A 163 ---------YLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRC----CNRIVIYRPPK-NIISQNELI 228 (321)
T ss_dssp ---------HHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGG----TTEEEECCCGG-GEEEHHHHH
T ss_pred ---------ccccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccc----cCeEEEEeCCC-CcccHHHHH
Confidence 0110 001222234567788999999999999999999987543 46778876421 689999999
Q ss_pred HHHhhhcccccCC
Q psy6053 414 DIGKSIVTTEVPL 426 (614)
Q Consensus 414 ~~~~~~~g~~~p~ 426 (614)
+.+.+.+|.+.+.
T Consensus 229 ~~~~~~~g~~~~~ 241 (321)
T 3c1o_A 229 SLWEAKSGLSFKK 241 (321)
T ss_dssp HHHHHHHTSCCCE
T ss_pred HHHHHHcCCccee
Confidence 9999999986543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-23 Score=211.79 Aligned_cols=229 Identities=14% Similarity=0.117 Sum_probs=165.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|+|||||||+|++++++|+++|++ |++++|+.... .+.++++ ...+++++.+|++++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~---V~~l~R~~~~~--~~~~~~l----------------~~~~v~~v~~Dl~d~ 70 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHP---TYVFTRPNSSK--TTLLDEF----------------QSLGAIIVKGELDEH 70 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCC---EEEEECTTCSC--HHHHHHH----------------HHTTCEEEECCTTCH
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCc---EEEEECCCCch--hhHHHHh----------------hcCCCEEEEecCCCH
Confidence 58999999999999999999999876 89999987522 2222222 114688999999986
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccCC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYP 262 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~~ 262 (614)
+ ++..+++++|+|||+|+... +.++++++++|++.+++++||+ | .++... +|.
T Consensus 71 ~------~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S-~~g~~~----~~~--- 123 (318)
T 2r6j_A 71 E------KLVELMKKVDVVISALAFPQ------------ILDQFKILEAIKVAGNIKRFLP-S-DFGVEE----DRI--- 123 (318)
T ss_dssp H------HHHHHHTTCSEEEECCCGGG------------STTHHHHHHHHHHHCCCCEEEC-S-CCSSCT----TTC---
T ss_pred H------HHHHHHcCCCEEEECCchhh------------hHHHHHHHHHHHhcCCCCEEEe-e-ccccCc----ccc---
Confidence 5 89999999999999998642 5678999999999533999985 3 332111 111
Q ss_pred CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCCC
Q psy6053 263 PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNIN 342 (614)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~ 342 (614)
.+..|. .+.| .+|+.+|+++++. +++++++||+.+++...
T Consensus 124 ~~~~p~-------------------------~~~y-~sK~~~e~~~~~~---~~~~~~lr~~~~~~~~~----------- 163 (318)
T 2r6j_A 124 NALPPF-------------------------EALI-ERKRMIRRAIEEA---NIPYTYVSANCFASYFI----------- 163 (318)
T ss_dssp CCCHHH-------------------------HHHH-HHHHHHHHHHHHT---TCCBEEEECCEEHHHHH-----------
T ss_pred cCCCCc-------------------------chhH-HHHHHHHHHHHhc---CCCeEEEEcceehhhhh-----------
Confidence 011000 0468 9999999999764 89999999998866411
Q ss_pred chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhccc
Q psy6053 343 GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTT 422 (614)
Q Consensus 343 g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~ 422 (614)
..++.....+....++++++...++++++|+|++++.++.++.. .+++|++.++. +.+|+.|+++.+.+.+|.
T Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~ 236 (318)
T 2r6j_A 164 --NYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRA----LNRVVIYRPST-NIITQLELISRWEKKIGK 236 (318)
T ss_dssp --HHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHHTC
T ss_pred --hhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCccc----cCeEEEecCCC-CccCHHHHHHHHHHHhCC
Confidence 01111112223334567888999999999999999998876542 46677776421 679999999999999898
Q ss_pred ccCC
Q psy6053 423 EVPL 426 (614)
Q Consensus 423 ~~p~ 426 (614)
+.+.
T Consensus 237 ~~~~ 240 (318)
T 2r6j_A 237 KFKK 240 (318)
T ss_dssp CCEE
T ss_pred CCce
Confidence 6543
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=192.83 Aligned_cols=241 Identities=14% Similarity=0.122 Sum_probs=172.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||||+||++++++|++.|++ |+++.|... +.++..+ +.+ ...++.++.+|
T Consensus 13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~---V~~~~r~~~------~~~~~~~---------~~~--~~~~~~~~~~D 72 (278)
T 2bgk_A 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAK---VVIADIADD------HGQKVCN---------NIG--SPDVISFVHCD 72 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH---------HHC--CTTTEEEEECC
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEcCChh------HHHHHHH---------HhC--CCCceEEEECC
Confidence 367899999999999999999999999875 888888532 1221110 001 11368999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh---------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCc
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF---------DEALKKAVLLNTRGTKMMLSLAKEM---KHLE 239 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k 239 (614)
+++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..
T Consensus 73 ~~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ 146 (278)
T 2bgk_A 73 VTKDE------DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG 146 (278)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC
Confidence 99865 6777665 78999999996532 2567788999999999999988763 2467
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+..... .....|+.||+..|.+++..+. .|
T Consensus 147 ~iv~isS~~~~~~~~-------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~g 189 (278)
T 2bgk_A 147 SIVFTASISSFTAGE-------------------------------------GVSHVYTATKHAVLGLTTSLCTELGEYG 189 (278)
T ss_dssp EEEEECCGGGTCCCT-------------------------------------TSCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred eEEEEeeccccCCCC-------------------------------------CCCcchHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999987643210 0015799999999999887754 48
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++++++|||.|+++......+ ........+..+ .+.....+++++|+|++++.++..... ...++
T Consensus 190 i~v~~v~Pg~v~t~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~ 254 (278)
T 2bgk_A 190 IRVNCVSPYIVASPLLTDVFG------VDSSRVEELAHQ-------AANLKGTLLRAEDVADAVAYLAGDESK--YVSGL 254 (278)
T ss_dssp EEEEEEEESCCSCCCCTTSSS------CCHHHHHHHHHH-------TCSSCSCCCCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred cEEEEEEeceecchhhhhhcc------cchhHHHHhhhc-------ccccccccCCHHHHHHHHHHHcCcccc--cCCCC
Confidence 999999999999875432110 011122121111 111224578999999999998865431 13588
Q ss_pred EEEeccCCcccccHHHHHHHHhhh
Q psy6053 396 IVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 396 vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
+|++.++ ..+++.|+.+.+.+.
T Consensus 255 ~~~v~gg--~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 255 NLVIDGG--YTRTNPAFPTALKHG 276 (278)
T ss_dssp EEEESTT--GGGCCTHHHHHSCSC
T ss_pred EEEECCc--ccccCCccchhhhhh
Confidence 9999998 789999999988765
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-22 Score=197.30 Aligned_cols=240 Identities=13% Similarity=0.067 Sum_probs=157.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++++++|++.|++ |+++.|..... . . .+.+|++++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~---V~~~~r~~~~~-------------------------~-~---~~~~D~~~~ 49 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHT---VIGIDRGQADI-------------------------E-A---DLSTPGGRE 49 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSSSSE-------------------------E-C---CTTSHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCE---EEEEeCChhHc-------------------------c-c---cccCCcccH
Confidence 58999999999999999999999875 89999975431 0 1 156788775
Q ss_pred CCCCCHHHHHHHhc----cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeCceeccCCcc
Q psy6053 183 ELAIKESDRQLLAS----EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHISTAYCHLQEKV 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~----~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST~~~~~~~~~ 255 (614)
+ +++.+++ ++|+|||+||......+++..+++|+.|+.+++++|... .+.+++|++||..++.....
T Consensus 50 ~------~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~ 123 (255)
T 2dkn_A 50 T------AVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA 123 (255)
T ss_dssp H------HHHHHHHHHTTCCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGG
T ss_pred H------HHHHHHHHcCCCccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccccccccc
Confidence 4 6777665 899999999987644567888999999999999988763 24589999999977653311
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecceeecccC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g~~~ 331 (614)
.. + ..+.....+++........ .....+.|+.||+..|.+++.... .|++++++|||.|+|+..
T Consensus 124 ~~------~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~ 191 (255)
T 2dkn_A 124 EL------P-----MVEAMLAGDEARAIELAEQ-QGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLL 191 (255)
T ss_dssp GC------H-----HHHHHHHTCHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHH
T ss_pred cc------c-----hhhhhcccchhhhhhhccc-cCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhh
Confidence 00 0 0000111111111110000 001125899999999999988654 489999999999988632
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
.. .+.....+....... + ...++++++|+|++++.++..... ...+++||++++ ..++++|
T Consensus 192 ~~-------------~~~~~~~~~~~~~~~-~-~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~gg--~~~~~~e 252 (255)
T 2dkn_A 192 QA-------------SKADPRYGESTRRFV-A-PLGRGSEPREVAEAIAFLLGPQAS--FIHGSVLFVDGG--MDALMRA 252 (255)
T ss_dssp HH-------------HHHCTTTHHHHHSCC-C-TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT--HHHHHCT
T ss_pred hh-------------cccchhhHHHHHHHH-H-HhcCCCCHHHHHHHHHHHhCCCcc--cceeeEEEecCC--eEeeeec
Confidence 10 000000000000000 1 334789999999999999876521 125789999988 6665543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=191.80 Aligned_cols=239 Identities=16% Similarity=0.144 Sum_probs=162.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+||||||||+||++++++|++.|++ |+++.|+.... +.+.+ + ...++.++.+|++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~---V~~~~r~~~~~---~~~~~------------~----~~~~~~~~~~Dv~ 61 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGDT---VIGTARRTEAL---DDLVA------------A----YPDRAEAISLDVT 61 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSGGGG---HHHHH------------H----CTTTEEEEECCTT
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHHH---HHHHH------------h----ccCCceEEEeeCC
Confidence 5789999999999999999999999875 88999975321 11111 1 3357899999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHH----HHHHHHHHHHcCCCceEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRG----TKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~g----t~~ll~la~~~~~~k~~V 242 (614)
+++ +++.+++ ++|+|||+||.... .+.++..+++|+.| ++.++..+++ .+..++|
T Consensus 62 ~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~~~iv 134 (281)
T 3m1a_A 62 DGE------RIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRE-RGSGSVV 134 (281)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEE
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEE
Confidence 976 6766665 68999999996432 35667789999999 5666666666 3678999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... + .+.|+.||+..|.+++..+. +|+++
T Consensus 135 ~~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 176 (281)
T 3m1a_A 135 NISSFGGQLSFA---------G-----------------------------FSAYSATKAALEQLSEGLADEVAPFGIKV 176 (281)
T ss_dssp EECCGGGTCCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcCccccCCCC---------C-----------------------------chHHHHHHHHHHHHHHHHHHHhhccCcEE
Confidence 999986543210 0 15899999999999887654 58999
Q ss_pred EEeecceeecccCCCCccc-cCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 319 LMLRPSIIIPVWREPLPGW-TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw-~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+++|||.|.++...+.... ................ .........+.+++|+|++++.++.+.. .+..|
T Consensus 177 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~dva~a~~~~~~~~~-----~~~~~ 245 (281)
T 3m1a_A 177 LIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQ------LVQGSDGSQPGDPAKAAAAIRLALDTEK-----TPLRL 245 (281)
T ss_dssp EEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHH------HHHC-----CBCHHHHHHHHHHHHHSSS-----CCSEE
T ss_pred EEEecCccccccccccccccCCcchhhHHHhHHHHH------HHhhccCCCCCCHHHHHHHHHHHHhCCC-----CCeEE
Confidence 9999999987754332211 1111111111100000 0111223456789999999999987653 56789
Q ss_pred EeccCCcccccHHHHHHHHhhh
Q psy6053 398 HLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 398 ni~~~~~~~it~~e~~~~~~~~ 419 (614)
+++++ ......+....+.+.
T Consensus 246 ~l~s~--~~~~i~g~~~~i~~~ 265 (281)
T 3m1a_A 246 ALGGD--AVDFLTGHLDSVRAE 265 (281)
T ss_dssp EESHH--HHHHHHHHHHHHHHH
T ss_pred ecCch--HHHHHHHHHHHHHHH
Confidence 99987 555666666665554
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=186.50 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=159.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.. +++++.+ .++. ...++.++.+|+
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~D~ 69 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGAS---VVVSDINAD------AANHVVD-----EIQQ-----LGGQAFACRCDI 69 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCE---EEEEESCHH------HHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCE---EEEEcCCHH------HHHHHHH-----HHHH-----hCCceEEEEcCC
Confidence 56899999999999999999999999875 889998642 2222111 1111 234688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+.+++|+
T Consensus 70 ~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~ 143 (255)
T 1fmc_A 70 TSEQ------ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILT 143 (255)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9865 6777665 79999999997542 3556788999999999999888521 25689999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... + ...|+.||+..|.+++.... .|++++
T Consensus 144 ~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~ 185 (255)
T 1fmc_A 144 ITSMAAENKNI---------N-----------------------------MTSYASSKAAASHLVRNMAFDLGEKNIRVN 185 (255)
T ss_dssp ECCGGGTCCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred EcchhhcCCCC---------C-----------------------------CcccHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 99987643210 0 15799999999999887664 489999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
++|||.|+++.... ...+ .+......+. ....+.+++|+|++++.++..... ...+++||+
T Consensus 186 ~v~Pg~v~t~~~~~-------~~~~-~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v 246 (255)
T 1fmc_A 186 GIAPGAILTDALKS-------VITP-EIEQKMLQHT---------PIRRLGQPQDIANAALFLCSPAAS--WVSGQILTV 246 (255)
T ss_dssp EEEECSBCSHHHHT-------TCCH-HHHHHHHHTC---------SSCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EEecccCcchhhhh-------ccCh-HHHHHHHhcC---------CcccCCCHHHHHHHHHHHhCCccc--cCCCcEEEE
Confidence 99999998764321 0111 1222222221 113467899999999988865431 125789999
Q ss_pred ccCCcccccH
Q psy6053 400 TSSQEWQVSW 409 (614)
Q Consensus 400 ~~~~~~~it~ 409 (614)
+++ ...|+
T Consensus 247 ~gg--~~~s~ 254 (255)
T 1fmc_A 247 SGG--GVQEL 254 (255)
T ss_dssp STT--SCCCC
T ss_pred CCc--eeccC
Confidence 988 55553
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=181.23 Aligned_cols=200 Identities=11% Similarity=0.025 Sum_probs=139.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.+|+||||||||+||++++++|++.| ++ |++++|+...... . ...++.++.+|+
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~---V~~~~R~~~~~~~---------------------~-~~~~~~~~~~Dl 76 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIK---QTLFARQPAKIHK---------------------P-YPTNSQIIMGDV 76 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEE---EEEEESSGGGSCS---------------------S-CCTTEEEEECCT
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCce---EEEEEcChhhhcc---------------------c-ccCCcEEEEecC
Confidence 45899999999999999999999998 44 8999997543110 0 235789999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcc--cc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKV--LY 257 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~--i~ 257 (614)
++++ +++.+++++|+|||+|+...+. .++++++++|++ .++++||++||..+++.... ..
T Consensus 77 ~d~~------~~~~~~~~~D~vv~~a~~~~~~-----------~~~~~~~~~~~~-~~~~~iV~iSS~~~~~~~~~~~~~ 138 (236)
T 3qvo_A 77 LNHA------ALKQAMQGQDIVYANLTGEDLD-----------IQANSVIAAMKA-CDVKRLIFVLSLGIYDEVPGKFVE 138 (236)
T ss_dssp TCHH------HHHHHHTTCSEEEEECCSTTHH-----------HHHHHHHHHHHH-TTCCEEEEECCCCC----------
T ss_pred CCHH------HHHHHhcCCCEEEEcCCCCchh-----------HHHHHHHHHHHH-cCCCEEEEEecceecCCCCccccc
Confidence 9865 8999999999999999875432 346789999999 48899999999977654321 00
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGW 337 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw 337 (614)
+. ...+..+...|..+|+.+.. .|++++++|||.++++.....
T Consensus 139 ~~-------------------------------~~~~~~~~~~~~~~~~~l~~---~gi~~~~vrPg~i~~~~~~~~--- 181 (236)
T 3qvo_A 139 WN-------------------------------NAVIGEPLKPFRRAADAIEA---SGLEYTILRPAWLTDEDIIDY--- 181 (236)
T ss_dssp -------------------------------------CGGGHHHHHHHHHHHT---SCSEEEEEEECEEECCSCCCC---
T ss_pred ch-------------------------------hhcccchHHHHHHHHHHHHH---CCCCEEEEeCCcccCCCCcce---
Confidence 00 00112344556666776653 399999999999988643211
Q ss_pred cCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 338 TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 338 ~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
............+++++|+|++++.++.++.. ..+++|+++++
T Consensus 182 -------------------~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~~---~~g~~~~i~~~ 224 (236)
T 3qvo_A 182 -------------------ELTSRNEPFKGTIVSRKSVAALITDIIDKPEK---HIGENIGINQP 224 (236)
T ss_dssp -------------------EEECTTSCCSCSEEEHHHHHHHHHHHHHSTTT---TTTEEEEEECS
T ss_pred -------------------EEeccCCCCCCcEECHHHHHHHHHHHHcCccc---ccCeeEEecCC
Confidence 00011111123579999999999999987652 26789999987
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=180.01 Aligned_cols=218 Identities=14% Similarity=0.177 Sum_probs=155.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+. ++++++.+ ...+++++.+|+
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~---V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~D~ 61 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAK---VVAVTRTN------SDLVSLAK--------------ECPGIEPVCVDL 61 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------HSTTCEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH--------------hccCCCcEEecC
Confidence 56899999999999999999999999876 88898863 22222211 112456779999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceEEEEe
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELFVHIS 245 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~V~vS 245 (614)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++.+... .+ .+++|++|
T Consensus 62 ~~~~------~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~s 135 (244)
T 1cyd_A 62 GDWD------ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVS 135 (244)
T ss_dssp TCHH------HHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCHH------HHHHHHHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 9865 7888776 48999999996432 3556778999999999999887652 13 57899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|..+..... + ...|+.||+..|.+++.... .|++++++
T Consensus 136 S~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v 177 (244)
T 1cyd_A 136 SMVAHVTFP---------N-----------------------------LITYSSTKGAMTMLTKAMAMELGPHKIRVNSV 177 (244)
T ss_dssp CGGGTSCCT---------T-----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred chhhcCCCC---------C-----------------------------cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 986643210 0 15799999999999987654 48999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
|||.|+++...+. .....++..+..+ ....++++++|+|++++.++..... ...++++++.+
T Consensus 178 ~pg~v~t~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~g 239 (244)
T 1cyd_A 178 NPTVVLTDMGKKV-------SADPEFARKLKER---------HPLRKFAEVEDVVNSILFLLSDRSA--STSGGGILVDA 239 (244)
T ss_dssp EECCBTTHHHHHH-------TCCHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSSEEEEST
T ss_pred ecCcccCcccccc-------ccCHHHHHHHHhc---------CCccCCCCHHHHHHHHHHHhCchhh--cccCCEEEECC
Confidence 9999988642110 0011122222221 1225789999999999998865432 12577888877
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
+
T Consensus 240 G 240 (244)
T 1cyd_A 240 G 240 (244)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-20 Score=179.15 Aligned_cols=202 Identities=14% Similarity=0.137 Sum_probs=143.0
Q ss_pred cEEEEecccccccHHHHHHHH-hhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKIL-RKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll-~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+|+||||||++|++++++|+ +.|++ |+++.|+.. ++++++.. ...++.++.+|+++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~---V~~~~r~~~-----~~~~~~~~--------------~~~~~~~~~~D~~d 63 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMH---ITLYGRQLK-----TRIPPEII--------------DHERVTVIEGSFQN 63 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCE---EEEEESSHH-----HHSCHHHH--------------TSTTEEEEECCTTC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCce---EEEEecCcc-----ccchhhcc--------------CCCceEEEECCCCC
Confidence 569999999999999999999 78765 899999742 02222110 23578999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcc-ccccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKV-LYEKP 260 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~-i~E~~ 260 (614)
++ ++..+++++|+|||+|+.. |+. ++++++.+++ .++++||++||..++..... ..+
T Consensus 64 ~~------~~~~~~~~~d~vv~~ag~~------------n~~-~~~~~~~~~~-~~~~~iv~iSs~~~~~~~~~~~~~-- 121 (221)
T 3r6d_A 64 PG------XLEQAVTNAEVVFVGAMES------------GSD-MASIVKALSR-XNIRRVIGVSMAGLSGEFPVALEK-- 121 (221)
T ss_dssp HH------HHHHHHTTCSEEEESCCCC------------HHH-HHHHHHHHHH-TTCCEEEEEEETTTTSCSCHHHHH--
T ss_pred HH------HHHHHHcCCCEEEEcCCCC------------Chh-HHHHHHHHHh-cCCCeEEEEeeceecCCCCccccc--
Confidence 65 8999999999999999964 444 8999999999 58899999999977553210 000
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCC
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN 340 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~ 340 (614)
+ ..+ ..++.|+.+|..+|.++++. |++++++|||.++++...
T Consensus 122 ---------------~--------~~~----~~~~~y~~~K~~~e~~~~~~---~i~~~~vrpg~v~~~~~~-------- 163 (221)
T 3r6d_A 122 ---------------W--------TFD----NLPISYVQGERQARNVLRES---NLNYTILRLTWLYNDPEX-------- 163 (221)
T ss_dssp ---------------H--------HHH----TSCHHHHHHHHHHHHHHHHS---CSEEEEEEECEEECCTTC--------
T ss_pred ---------------c--------ccc----ccccHHHHHHHHHHHHHHhC---CCCEEEEechhhcCCCCC--------
Confidence 0 000 11237999999999999764 999999999999886211
Q ss_pred CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHH--HhhhhcCCCCccEEEeccC
Q psy6053 341 INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAI--WAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 341 ~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~--~~~~~~~~~~~~vyni~~~ 402 (614)
+..............+++.+|+|++++.++ .++.. ..++.+.++++
T Consensus 164 -------------~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~---~~~~~~~i~~~ 211 (221)
T 3r6d_A 164 -------------TDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETP---FHRTSIGVGEP 211 (221)
T ss_dssp -------------CCCEEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGG---GTTEEEEEECT
T ss_pred -------------cceeeccCCccCCCceeeHHHHHHHHHHHHHhcChhh---hhcceeeecCC
Confidence 001111111111223789999999999998 65442 24567777755
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.9e-20 Score=187.23 Aligned_cols=243 Identities=18% Similarity=0.117 Sum_probs=167.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||||+||++++++|++.|++ |+++.|... ++++..+ .+... ...++.++.+|
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~~~D 84 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQ---CVIASRKMD------VLKATAE-----QISSQ----TGNKVHAIQCD 84 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHH----HSSCEEEEECC
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHHh----cCCceEEEEeC
Confidence 367899999999999999999999999875 888888642 2222111 11111 13578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLEL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~ 240 (614)
+++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..+
T Consensus 85 l~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~ 158 (302)
T 1w6u_A 85 VRDPD------MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAA 158 (302)
T ss_dssp TTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCE
Confidence 99865 6666665 45999999995422 3556788999999999998887542 24579
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||.++..... ....|+.||+..|.+++..+. .|+
T Consensus 159 iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~gi 200 (302)
T 1w6u_A 159 FLSITTIYAETGSG--------------------------------------FVVPSASAKAGVEAMSKSLAAEWGKYGM 200 (302)
T ss_dssp EEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEcccccccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhcCc
Confidence 99999987643210 015799999999999887654 489
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++++|||.|.++... +..............+. ....+.+++|+|++++.++..... ...+++
T Consensus 201 ~v~~v~Pg~v~t~~~~------~~~~~~~~~~~~~~~~~---------p~~~~~~~~dva~~~~~l~~~~~~--~~~G~~ 263 (302)
T 1w6u_A 201 RFNVIQPGPIKTKGAF------SRLDPTGTFEKEMIGRI---------PCGRLGTVEELANLAAFLCSDYAS--WINGAV 263 (302)
T ss_dssp EEEEEEECCBCC------------CCTTSHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHTSGGGT--TCCSCE
T ss_pred EEEEEeeccCCCcchh------hhcccchhhHHHHHhcC---------CcCCCCCHHHHHHHHHHHcCCccc--ccCCCE
Confidence 9999999999876211 01000000111112211 112467899999999988864331 125789
Q ss_pred EEeccCCcccccHHHHHHHHhhhccc
Q psy6053 397 VHLTSSQEWQVSWQEIIDIGKSIVTT 422 (614)
Q Consensus 397 yni~~~~~~~it~~e~~~~~~~~~g~ 422 (614)
|++.++ ..+++.++.+.+.+..|.
T Consensus 264 ~~v~gg--~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 264 IKFDGG--EEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp EEESTT--HHHHHHSTTGGGGGCCHH
T ss_pred EEECCC--eeeccCCccccchhhccc
Confidence 999998 778888888777776554
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=178.79 Aligned_cols=207 Identities=14% Similarity=0.103 Sum_probs=153.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+||||||+|+||++++++|++.|.+ |+++.|+.... ...++.++.+|+
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~~~-------------------------~~~~~~~~~~Dv 77 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNYR---VVATSRSIKPS-------------------------ADPDIHTVAGDI 77 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESSCCCC-------------------------SSTTEEEEESCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCChhhc-------------------------ccCceEEEEccC
Confidence 46899999999999999999999999876 88999975432 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHH----HcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAK----EMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+. + .+..++
T Consensus 78 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~i 150 (260)
T 3un1_A 78 SKPE------TADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLK-QGSGHI 150 (260)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCcEE
Confidence 9976 6776665 7999999999653 135677889999999999998873 4 356799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... .. ....|+.||+..|.+.+..+. +|++
T Consensus 151 v~isS~~~~~~~~-------~~-----------------------------~~~~Y~~sKaa~~~l~~~la~e~~~~gI~ 194 (260)
T 3un1_A 151 VSITTSLVDQPMV-------GM-----------------------------PSALASLTKGGLNAVTRSLAMEFSRSGVR 194 (260)
T ss_dssp EEECCTTTTSCBT-------TC-----------------------------CCHHHHHHHHHHHHHHHHHHHHTTTTTEE
T ss_pred EEEechhhccCCC-------CC-----------------------------ccHHHHHHHHHHHHHHHHHHHHhCcCCeE
Confidence 9999986532211 00 015799999999999887765 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+.+++||.|.++...+ . ....... ......+..++|+|++++.+..... ..++++
T Consensus 195 vn~v~PG~v~t~~~~~---------~---~~~~~~~---------~~p~~r~~~~~dva~av~~L~~~~~----itG~~i 249 (260)
T 3un1_A 195 VNAVSPGVIKTPMHPA---------E---THSTLAG---------LHPVGRMGEIRDVVDAVLYLEHAGF----ITGEIL 249 (260)
T ss_dssp EEEEEECCBCCTTSCG---------G---GHHHHHT---------TSTTSSCBCHHHHHHHHHHHHHCTT----CCSCEE
T ss_pred EEEEeecCCCCCCCCH---------H---HHHHHhc---------cCCCCCCcCHHHHHHHHHHhcccCC----CCCcEE
Confidence 9999999998764321 0 0111111 1122346789999999998833222 368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 250 ~vdGG 254 (260)
T 3un1_A 250 HVDGG 254 (260)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=178.81 Aligned_cols=224 Identities=14% Similarity=0.104 Sum_probs=155.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|+++|++ |+++.|+.. ++++.. +.++. ...++.++.+|+
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~-----~~l~~-----~~~~~~~~~~D~ 71 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGAR---VIIADLDEA------MATKAV-----EDLRM-----EGHDVSSVVMDV 71 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHH-----HHHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHH-----HHHHh-----cCCceEEEEecC
Confidence 46899999999999999999999999865 889988642 222111 11111 224689999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.+++ ++|+|||+||... ..+.+...+++|+.|+.++++.+... .+..++
T Consensus 72 ~~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~i 145 (260)
T 3awd_A 72 TNTE------SVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVI 145 (260)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEE
Confidence 9865 6666664 6899999999643 13456778999999999999888642 256799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||.++...... .| ...|+.||+..|.+++.... .|++
T Consensus 146 v~~sS~~~~~~~~~-------~~-----------------------------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~ 189 (260)
T 3awd_A 146 VAIGSMSGLIVNRP-------QQ-----------------------------QAAYNASKAGVHQYIRSLAAEWAPHGIR 189 (260)
T ss_dssp EEECCGGGTSCCSS-------SC-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEecchhcccCCC-------CC-----------------------------ccccHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 99999876432110 00 15799999999999887654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.|+++...+ +...+ .+......+. ....+++++|+|++++.++..... ...+.+|
T Consensus 190 v~~v~pg~v~t~~~~~------~~~~~-~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 251 (260)
T 3awd_A 190 ANAVAPTYIETTLTRF------GMEKP-ELYDAWIAGT---------PMGRVGQPDEVASVVQFLASDAAS--LMTGAIV 251 (260)
T ss_dssp EEEEEECCBCCTTTHH------HHTCH-HHHHHHHHTC---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeeeeccchhhc------ccCCh-HHHHHHHhcC---------CcCCCCCHHHHHHHHHHHhCchhc--cCCCcEE
Confidence 9999999998874320 00011 1222222211 113478999999999988865332 1357899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 252 ~v~gg 256 (260)
T 3awd_A 252 NVDAG 256 (260)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 99877
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=177.40 Aligned_cols=246 Identities=14% Similarity=0.087 Sum_probs=155.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+. +++++..+ .+... .. ...++.++.+|+
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~~-~~-~~~~~~~~~~D~ 67 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAK---VTITGRHA------ERLEETRQ-----QILAA-GV-SEQNVNSVVADV 67 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHT-TC-CGGGEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHhc-cc-CCCceeEEeccc
Confidence 56899999999999999999999999875 88888863 22322211 11000 11 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-----------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCC
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-----------FDEALKKAVLLNTRGTKMMLSLAKEM---KHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-----------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~ 238 (614)
++++ +++.+++ ++|++||+||... ..+.++..+++|+.|+.++++.+... .+
T Consensus 68 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~- 140 (278)
T 1spx_A 68 TTDA------GQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK- 140 (278)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-
Confidence 9865 6777665 7999999999653 23456778999999999999888753 13
Q ss_pred ceEEEEeCcee-ccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 239 ELFVHISTAYC-HLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 239 k~~V~vST~~~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
.++|++||..+ .... | ....|+.||+..|.+.+....
T Consensus 141 g~iv~isS~~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~ 182 (278)
T 1spx_A 141 GEIVNISSIASGLHAT----------P----------------------------DFPYYSIAKAAIDQYTRNTAIDLIQ 182 (278)
T ss_dssp CEEEEECCTTSSSSCC----------T----------------------------TSHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CeEEEEecccccccCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999865 3211 0 014799999999998877653
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC-C
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE-H 392 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~-~ 392 (614)
.|++++++|||.|.++.......-................. . + ...+.+++|+|++++.++..... . .
T Consensus 183 ~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----~---p--~~~~~~~~dvA~~v~~l~s~~~~--~~~ 251 (278)
T 1spx_A 183 HGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC----V---P--AGVMGQPQDIAEVIAFLADRKTS--SYI 251 (278)
T ss_dssp GTCEEEEEEECCBCCCC--------------HHHHHHHHHH----C---T--TSSCBCHHHHHHHHHHHHCHHHH--TTC
T ss_pred cCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhc----C---C--CcCCCCHHHHHHHHHHHcCcccc--Ccc
Confidence 58999999999998764321000000000000001111110 0 1 12478999999999988865432 1 2
Q ss_pred CccEEEeccCCcccccHHHHHHHHhhh
Q psy6053 393 RQSIVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 393 ~~~vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
.++++++.++ ..+++.++.+.+.+.
T Consensus 252 tG~~~~vdgG--~~~~~~~~~~~~~~~ 276 (278)
T 1spx_A 252 IGHQLVVDGG--SSLIMGLHCQDFAKL 276 (278)
T ss_dssp CSCEEEESTT--GGGC-----------
T ss_pred cCcEEEECCC--cccccCcccccHHHH
Confidence 5889999988 789999999888765
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-19 Score=176.46 Aligned_cols=232 Identities=13% Similarity=0.113 Sum_probs=151.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhcc--ccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHG--QKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p--~~~~~~v~~v~g 177 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.. ++++..+. +..... .....++.++.+
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 70 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGAT---VAACDLDRA------AAQETVRL-----LGGPGSKEGPPRGNHAAFQA 70 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSHH------HHHHHHHT-----C------------CCEEEEC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCChH------HHHHHHHH-----HHhcCccccccCcceEEEEe
Confidence 56899999999999999999999999865 889988642 22222110 000000 001146889999
Q ss_pred CCCCCCCCCCHHHHHHHhcc-------c-cEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-C
Q psy6053 178 DAEADELAIKESDRQLLASE-------V-DIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-L 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~-------v-d~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~ 238 (614)
|+++++ +++.++++ + |+|||+||.... .+.++..+++|+.|+.++++++... .+ .
T Consensus 71 D~~~~~------~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ 144 (264)
T 2pd6_A 71 DVSEAR------AARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCR 144 (264)
T ss_dssp CTTSHH------HHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCHH------HHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 999865 66666654 3 999999997542 3567788999999999999988763 12 4
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||.++..... ....|+.||+..|.+++.... .
T Consensus 145 g~iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~ 186 (264)
T 2pd6_A 145 GSIINISSIVGKVGNV--------------------------------------GQTNYAASKAGVIGLTQTAARELGRH 186 (264)
T ss_dssp EEEEEECCTHHHHCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ceEEEECChhhccCCC--------------------------------------CChhhHHHHHHHHHHHHHHHHHhhhc
Confidence 6899999986532210 015799999999888877654 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|++++++|||.|+++.....+. .+...+..+ .....+.+++|+|++++.++..... ...+
T Consensus 187 gi~v~~v~Pg~v~t~~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G 246 (264)
T 2pd6_A 187 GIRCNSVLPGFIATPMTQKVPQ---------KVVDKITEM---------IPMGHLGDPEDVADVVAFLASEDSG--YITG 246 (264)
T ss_dssp TEEEEEEEECSBCSCC-------------------CTGGG---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CeEEEEEeeecccccchhhcCH---------HHHHHHHHh---------CCCCCCCCHHHHHHHHHHHcCCccc--CCCC
Confidence 8999999999998875321110 011001111 0112467899999999988865331 1367
Q ss_pred cEEEeccCCcccccHHH
Q psy6053 395 SIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 395 ~vyni~~~~~~~it~~e 411 (614)
.++++.++ ..+++..
T Consensus 247 ~~~~v~gg--~~~~~~~ 261 (264)
T 2pd6_A 247 TSVEVTGG--LFMAENL 261 (264)
T ss_dssp CEEEESTT--C------
T ss_pred CEEEECCC--ceecccc
Confidence 89999888 5555444
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=174.98 Aligned_cols=218 Identities=15% Similarity=0.216 Sum_probs=154.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+. ++++++.+ ...+++++.+|+
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~---V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~D~ 61 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGAR---VVAVSRTQ------ADLDSLVR--------------ECPGIEPVCVDL 61 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------HSTTCEEEECCT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH--------------HcCCCCEEEEeC
Confidence 56899999999999999999999999875 88888863 23332211 112456779999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceEEEEe
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELFVHIS 245 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~V~vS 245 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|++|
T Consensus 62 ~~~~------~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~s 135 (244)
T 3d3w_A 62 GDWE------ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVS 135 (244)
T ss_dssp TCHH------HHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCHH------HHHHHHHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 9865 7777775 58999999996532 3456788999999999998887652 13 57899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|..+..... ....|+.||+..|.+++..+. .|++++++
T Consensus 136 S~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v 177 (244)
T 3d3w_A 136 SQCSQRAVT--------------------------------------NHSVYCSTKGALDMLTKVMALELGPHKIRVNAV 177 (244)
T ss_dssp CGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred chhhccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEE
Confidence 986543210 015799999999999987654 48999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
|||.|.++.... .|.+ + ........+ ....++++++|+|++++.++..... ...+++|++.+
T Consensus 178 ~Pg~v~t~~~~~--~~~~----~-~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~v~g 239 (244)
T 3d3w_A 178 NPTVVMTSMGQA--TWSD----P-HKAKTMLNR---------IPLGKFAEVEHVVNAILFLLSDRSG--MTTGSTLPVEG 239 (244)
T ss_dssp EECCBTTTTHHH--HSCS----T-THHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEEST
T ss_pred Eeccccccchhh--hccC----h-HHHHHHHhh---------CCCCCCcCHHHHHHHHHHHcCcccc--CCCCCEEEECC
Confidence 999998764210 0000 0 011111111 1123678999999999998865431 12578999987
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
+
T Consensus 240 G 240 (244)
T 3d3w_A 240 G 240 (244)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-20 Score=176.52 Aligned_cols=186 Identities=13% Similarity=0.136 Sum_probs=139.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||+||++++++|+++ +|+++.|+. ++++++.+ + . .. .++.+|++++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-----~V~~~~r~~------~~~~~~~~---------~----~-~~-~~~~~D~~~~ 54 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-----DLLLSGRRA------GALAELAR---------E----V-GA-RALPADLADE 54 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-----EEEEECSCH------HHHHHHHH---------H----H-TC-EECCCCTTSH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-----CEEEEECCH------HHHHHHHH---------h----c-cC-cEEEeeCCCH
Confidence 57999999999999999999987 489999863 22222211 0 1 12 7889999986
Q ss_pred CCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccC
Q psy6053 183 ELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQ 252 (614)
Q Consensus 183 ~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~ 252 (614)
+ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++++ .+.+++|++||..++..
T Consensus 55 ~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~iv~~sS~~~~~~ 127 (207)
T 2yut_A 55 L------EAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARF-QKGARAVFFGAYPRYVQ 127 (207)
T ss_dssp H------HHHHHHHHHCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE-EEEEEEEEECCCHHHHS
T ss_pred H------HHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh-cCCcEEEEEcChhhccC
Confidence 5 7888877 89999999997532 245677899999999999999965 46789999999976432
Q ss_pred CcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecceeec
Q psy6053 253 EKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIP 328 (614)
Q Consensus 253 ~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g 328 (614)
.. ....|+.||+..|.+++.... .|++++++|||.+++
T Consensus 128 ~~--------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t 169 (207)
T 2yut_A 128 VP--------------------------------------GFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVAT 169 (207)
T ss_dssp ST--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCS
T ss_pred CC--------------------------------------CcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccC
Confidence 10 015799999999999887654 489999999999977
Q ss_pred ccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 329 VWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 329 ~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+... +.+....++++++|+|++++.++.++.
T Consensus 170 ~~~~----------------------------~~~~~~~~~~~~~dva~~~~~~~~~~~ 200 (207)
T 2yut_A 170 GLWA----------------------------PLGGPPKGALSPEEAARKVLEGLFREP 200 (207)
T ss_dssp GGGG----------------------------GGTSCCTTCBCHHHHHHHHHHHHC--C
T ss_pred CCcc----------------------------ccCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 5310 112233678999999999999886543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=174.54 Aligned_cols=221 Identities=13% Similarity=0.160 Sum_probs=155.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc-CCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ-KKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~-~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|. ... . +.+.+. ++. ...++.++.+|
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~---V~~~~r~~~~~--~-~~~~~~--------~~~-----~~~~~~~~~~D 65 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAK---VGLHGRKAPAN--I-DETIAS--------MRA-----DGGDAAFFAAD 65 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCCTT--H-HHHHHH--------HHH-----TTCEEEEEECC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEECCCchhh--H-HHHHHH--------HHh-----cCCceEEEECC
Confidence 56899999999999999999999999876 8899997 332 1 112111 110 23578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccc-cC---h----hHHHHHHHHHhHHHHHHHHHHHHHc---CC--C
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAAT-IR---F----DEALKKAVLLNTRGTKMMLSLAKEM---KH--L 238 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~-v~---~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~--~ 238 (614)
+++++ +++.+++ ++|+|||+||. .. + .+.++..+++|+.|+.++++.+... .+ .
T Consensus 66 ~~~~~------~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 139 (258)
T 3afn_B 66 LATSE------ACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKAS 139 (258)
T ss_dssp TTSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCC
Confidence 99865 6777766 79999999996 22 1 2456778999999999998876531 11 2
Q ss_pred ---ceEEEEeCceecc-CCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-
Q psy6053 239 ---ELFVHISTAYCHL-QEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN- 313 (614)
Q Consensus 239 ---k~~V~vST~~~~~-~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~- 313 (614)
.++|++||.++.. .. ++ ...|+.||+..|.+++....
T Consensus 140 ~~~~~iv~~sS~~~~~~~~---------~~-----------------------------~~~Y~~sK~a~~~~~~~~~~e 181 (258)
T 3afn_B 140 GQTSAVISTGSIAGHTGGG---------PG-----------------------------AGLYGAAKAFLHNVHKNWVDF 181 (258)
T ss_dssp TSCEEEEEECCTHHHHCCC---------TT-----------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhccCCC---------CC-----------------------------chHHHHHHHHHHHHHHHHHHh
Confidence 6899999987643 11 00 15799999999999887654
Q ss_pred ---CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcC
Q psy6053 314 ---NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQK 390 (614)
Q Consensus 314 ---~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~ 390 (614)
.|++++++|||.|.++..... . ..+...+..+. ....+++++|+|++++.++..... .
T Consensus 182 ~~~~gi~v~~v~Pg~v~t~~~~~~--------~-~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~-~ 242 (258)
T 3afn_B 182 HTKDGVRFNIVSPGTVDTAFHADK--------T-QDVRDRISNGI---------PMGRFGTAEEMAPAFLFFASHLAS-G 242 (258)
T ss_dssp HGGGTEEEEEEEECSBSSGGGTTC--------C-HHHHHHHHTTC---------TTCSCBCGGGTHHHHHHHHCHHHH-T
T ss_pred hcccCeEEEEEeCCCccccccccc--------C-HHHHHHHhccC---------CCCcCCCHHHHHHHHHHHhCcchh-c
Confidence 489999999999988754211 1 12222222221 123688999999999988865421 0
Q ss_pred CCCccEEEeccC
Q psy6053 391 EHRQSIVHLTSS 402 (614)
Q Consensus 391 ~~~~~vyni~~~ 402 (614)
...+++|++.++
T Consensus 243 ~~~G~~~~v~gg 254 (258)
T 3afn_B 243 YITGQVLDINGG 254 (258)
T ss_dssp TCCSEEEEESTT
T ss_pred cccCCEEeECCC
Confidence 025789999877
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=181.48 Aligned_cols=225 Identities=15% Similarity=0.152 Sum_probs=156.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|+. +++++..+ + ...++.++.+|+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D~ 63 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGAT---VAIADIDI------ERARQAAA---------E----IGPAAYAVQMDV 63 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HCTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----hCCCceEEEeeC
Confidence 57899999999999999999999999876 88888853 23332211 0 224678999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... +.-.++
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~i 137 (259)
T 4e6p_A 64 TRQD------SIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKI 137 (259)
T ss_dssp TCHH------HHHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9976 6776665 79999999997532 3567788999999999999988652 114589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+..+. +|++
T Consensus 138 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 179 (259)
T 4e6p_A 138 INMASQAGRRGEA--------------------------------------LVAIYCATKAAVISLTQSAGLDLIKHRIN 179 (259)
T ss_dssp EEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECChhhccCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHhhhcCCE
Confidence 9999987643210 015799999999999887664 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhc---CceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGK---GVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~---g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
+.+++||.|.++.... ...++..... +.......+......+.+++|+|++++.++..... -..+
T Consensus 180 vn~v~PG~v~t~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~--~itG 247 (259)
T 4e6p_A 180 VNAIAPGVVDGEHWDG----------VDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESD--YIVS 247 (259)
T ss_dssp EEEEEECCBCSTTHHH----------HHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGT--TCCS
T ss_pred EEEEEECCCccchhhh----------hhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccC--CCCC
Confidence 9999999998763211 0011111110 00000111223345688999999999888754432 1358
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
++|++.++
T Consensus 248 ~~i~vdgG 255 (259)
T 4e6p_A 248 QTYNVDGG 255 (259)
T ss_dssp CEEEESTT
T ss_pred CEEEECcC
Confidence 89999887
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-19 Score=178.37 Aligned_cols=229 Identities=16% Similarity=0.137 Sum_probs=155.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|... ++++++.+ .++. ...++.++.+|+
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~~---v~~~~r~~~-----~~~~~~~~-----~l~~-----~~~~~~~~~~D~ 80 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGAS---VVVNYGSSS-----KAAEEVVA-----ELKK-----LGAQGVAIQADI 80 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCH-----HHHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEcCCch-----HHHHHHHH-----HHHh-----cCCcEEEEEecC
Confidence 57899999999999999999999999865 888888421 22222110 1111 235688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|++
T Consensus 81 ~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~ 154 (274)
T 1ja9_A 81 SKPS------EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 154 (274)
T ss_dssp TSHH------HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEE
Confidence 9865 6776665 78999999996532 3456778999999999999998773 111689999
Q ss_pred eCceec-cCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 245 STAYCH-LQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 245 ST~~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
||..+. ... | ....|+.||+..|.+++.... .|++++
T Consensus 155 sS~~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~ 196 (274)
T 1ja9_A 155 SSIAAVMTGI----------P----------------------------NHALYAGSKAAVEGFCRAFAVDCGAKGVTVN 196 (274)
T ss_dssp CCGGGTCCSC----------C----------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred cChHhccCCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 998764 211 0 015799999999999887654 489999
Q ss_pred EeecceeecccCCCC-----ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 320 MLRPSIIIPVWREPL-----PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 320 IvRp~~I~g~~~~p~-----~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
++|||.|.++...+. +...... ........... .....++++++|+|++++.++..... ...+
T Consensus 197 ~v~Pg~v~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~dva~~i~~l~~~~~~--~~~G 264 (274)
T 1ja9_A 197 CIAPGGVKTDMFDENSWHYAPGGYKGM-PQEKIDEGLAN---------MNPLKRIGYPADIGRAVSALCQEESE--WING 264 (274)
T ss_dssp EEEECCBSSHHHHHHGGGTSTTCCTTC-CHHHHHHHHHH---------TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred EEeeCcccccchhcccccccccccccC-chHHHHHHHHh---------cCCCCCccCHHHHHHHHHHHhCcccc--cccC
Confidence 999999977632110 0000000 00111111111 12234688999999999988865431 1257
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
++|+++++
T Consensus 265 ~~~~v~gG 272 (274)
T 1ja9_A 265 QVIKLTGG 272 (274)
T ss_dssp CEEEESTT
T ss_pred cEEEecCC
Confidence 89999876
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=176.74 Aligned_cols=220 Identities=15% Similarity=0.128 Sum_probs=142.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.. ++++..+ .+.. ...++.++.+|+
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~D~ 72 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAV---IHTCARNEY------ELNECLS-----KWQK-----KGFQVTGSVCDA 72 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHh-----cCCeeEEEECCC
Confidence 56899999999999999999999999875 888888632 2222111 1111 224688999999
Q ss_pred CCCCCCCCHHHHHHHh--------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHH----HcCCCce
Q psy6053 180 EADELAIKESDRQLLA--------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAK----EMKHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~--------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~ 240 (614)
++++ +++.++ .++|+|||+||.... .+.++..+++|+.|+.++++++. + .+.++
T Consensus 73 ~~~~------~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~~~ 145 (266)
T 1xq1_A 73 SLRP------EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKA-SGCGN 145 (266)
T ss_dssp TSHH------HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSCE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcE
Confidence 9865 666665 568999999996532 34567789999999999999883 4 35789
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..|.+++.... .|+
T Consensus 146 iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi 187 (266)
T 1xq1_A 146 IIFMSSIAGVVSAS--------------------------------------VGSIYSATKGALNQLARNLACEWASDGI 187 (266)
T ss_dssp EEEEC------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEEccchhccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHhHhCc
Confidence 99999986643210 015799999999999887654 489
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++++|||.|+++...... . ..+....... .....+++++|+|++++.++..... ...+++
T Consensus 188 ~v~~v~Pg~v~t~~~~~~~-------~-~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~ 248 (266)
T 1xq1_A 188 RANAVAPAVIATPLAEAVY-------D-DEFKKVVISR---------KPLGRFGEPEEVSSLVAFLCMPAAS--YITGQT 248 (266)
T ss_dssp EEEEEECCSCC------------------------------------------CCGGGGHHHHHHHTSGGGT--TCCSCE
T ss_pred EEEEEeeCCCccchhhhhc-------C-HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc--CccCcE
Confidence 9999999999887532110 0 0010001110 0112467899999999988754321 125789
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 249 ~~v~gG 254 (266)
T 1xq1_A 249 ICVDGG 254 (266)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999887
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=175.53 Aligned_cols=220 Identities=14% Similarity=0.128 Sum_probs=151.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.. +++++.+ .+... ...++.++.+|+
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~~----~~~~~~~~~~D~ 66 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGST---VIITGTSGE------RAKAVAE-----EIANK----YGVKAHGVEMNL 66 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSHH------HHHHHHH-----HHHHH----HCCCEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCChH------HHHHHHH-----HHHhh----cCCceEEEEccC
Confidence 56899999999999999999999999875 889998632 2222110 11100 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~ 241 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+ ++ .+.+++
T Consensus 67 ~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~~~i 139 (248)
T 2pnf_A 67 LSEE------SINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIK-QRWGRI 139 (248)
T ss_dssp TCHH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHH-HTCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-cCCcEE
Confidence 9865 6777765 79999999997542 3456788999999997666554 34 356899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+.... .|++
T Consensus 140 v~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~ 181 (248)
T 2pnf_A 140 VNISSVVGFTGNV--------------------------------------GQVNYSTTKAGLIGFTKSLAKELAPRNVL 181 (248)
T ss_dssp EEECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEccHHhcCCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999985432110 015799999999988877654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.+.++.... . . .........+. ....+++++|+|++++.++..... ...+++|
T Consensus 182 v~~v~Pg~v~t~~~~~-------~-~-~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 241 (248)
T 2pnf_A 182 VNAVAPGFIETDMTAV-------L-S-EEIKQKYKEQI---------PLGRFGSPEEVANVVLFLCSELAS--YITGEVI 241 (248)
T ss_dssp EEEEEECSBCCGGGGG-------S-C-HHHHHHHHHTC---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeceecCchhhh-------c-c-HHHHHHHHhcC---------CCCCccCHHHHHHHHHHHhCchhh--cCCCcEE
Confidence 9999999998764321 1 1 11111111111 113478999999999988865321 1357899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 242 ~v~gg 246 (248)
T 2pnf_A 242 HVNGG 246 (248)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 99876
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=173.13 Aligned_cols=184 Identities=13% Similarity=0.141 Sum_probs=139.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||+||++++++|+ +|++ |+++.|... .+.+|++++
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~---V~~~~r~~~---------------------------------~~~~D~~~~ 46 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAE---VITAGRHSG---------------------------------DVTVDITNI 46 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSE---EEEEESSSS---------------------------------SEECCTTCH
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCe---EEEEecCcc---------------------------------ceeeecCCH
Confidence 489999999999999999999 8865 888888642 367899986
Q ss_pred CCCCCHHHHHHHhcc---ccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCceecc
Q psy6053 183 ELAIKESDRQLLASE---VDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHISTAYCHL 251 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~---vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~~~~~ 251 (614)
+ +++.++++ +|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|++||.++..
T Consensus 47 ~------~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~ 120 (202)
T 3d7l_A 47 D------SIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED 120 (202)
T ss_dssp H------HHHHHHHHHCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS
T ss_pred H------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC
Confidence 5 77777765 8999999996431 2456678899999999999999873 1126899999986532
Q ss_pred CCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEeecceeec
Q psy6053 252 QEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLRPSIIIP 328 (614)
Q Consensus 252 ~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvRp~~I~g 328 (614)
... ....|+.||...|.+++.... .|++++++|||.+++
T Consensus 121 ~~~--------------------------------------~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~ 162 (202)
T 3d7l_A 121 PIV--------------------------------------QGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEE 162 (202)
T ss_dssp CCT--------------------------------------TCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGG
T ss_pred CCC--------------------------------------ccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCC
Confidence 210 015799999999999998775 389999999999977
Q ss_pred ccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 329 VWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 329 ~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
+... .. +.....++++++|+|++++.++.. . ..+++||+
T Consensus 163 ~~~~------------------~~---------~~~~~~~~~~~~dva~~~~~~~~~-~----~~G~~~~v 201 (202)
T 3d7l_A 163 SWDK------------------LE---------PFFEGFLPVPAAKVARAFEKSVFG-A----QTGESYQV 201 (202)
T ss_dssp GHHH------------------HG---------GGSTTCCCBCHHHHHHHHHHHHHS-C----CCSCEEEE
T ss_pred chhh------------------hh---------hhccccCCCCHHHHHHHHHHhhhc-c----ccCceEec
Confidence 6310 01 112245689999999998887732 2 25778886
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=174.05 Aligned_cols=205 Identities=15% Similarity=0.164 Sum_probs=150.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||||+||++++++|+++|++ |+++.|+... +++.++.+|+++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~---V~~~~r~~~~----------------------------~~~~~~~~D~~~ 50 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYR---VVVLDLRREG----------------------------EDLIYVEGDVTR 50 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCE---EEEEESSCCS----------------------------SSSEEEECCTTC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEccCccc----------------------------cceEEEeCCCCC
Confidence 689999999999999999999999876 8899987541 235789999998
Q ss_pred CCCCCCHHHHHHHhc------cccEEEEcccccChh-----------HHHHHHHHHhHHHHHHHHHHHHHc-CC------
Q psy6053 182 DELAIKESDRQLLAS------EVDIMIHGAATIRFD-----------EALKKAVLLNTRGTKMMLSLAKEM-KH------ 237 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~~-----------~~~~~~~~~Nv~gt~~ll~la~~~-~~------ 237 (614)
++ +++++++ ++|+|||+||..... +.++..+++|+.|+.++++++... ..
T Consensus 51 ~~------~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~ 124 (242)
T 1uay_A 51 EE------DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAE 124 (242)
T ss_dssp HH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTT
T ss_pred HH------HHHHHHHHHHhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCC
Confidence 65 7777776 789999999965321 267788999999999999988763 11
Q ss_pred --CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--
Q psy6053 238 --LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-- 313 (614)
Q Consensus 238 --~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-- 313 (614)
..++|++||..+..... ....|+.||+..|.+++....
T Consensus 125 ~~~~~iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~e~ 166 (242)
T 1uay_A 125 GQRGVIVNTASVAAFEGQI--------------------------------------GQAAYAASKGGVVALTLPAAREL 166 (242)
T ss_dssp SCSEEEEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhccCCC--------------------------------------CCchhhHHHHHHHHHHHHHHHHH
Confidence 13899999997643211 015799999999988876654
Q ss_pred --CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC
Q psy6053 314 --NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391 (614)
Q Consensus 314 --~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~ 391 (614)
.|++++++|||.|+++..... +..+......+.. ....+++++|+|++++.++....
T Consensus 167 ~~~gi~v~~v~Pg~v~t~~~~~~---------~~~~~~~~~~~~~--------~~~~~~~~~dva~~~~~l~~~~~---- 225 (242)
T 1uay_A 167 AGWGIRVVTVAPGLFDTPLLQGL---------PEKAKASLAAQVP--------FPPRLGRPEEYAALVLHILENPM---- 225 (242)
T ss_dssp GGGTEEEEEEEECSCSSHHHHTS---------CHHHHHHHHTTCC--------SSCSCCCHHHHHHHHHHHHHCTT----
T ss_pred hhcCcEEEEEEeccCcchhhhcc---------chhHHHHHHhhCC--------CcccCCCHHHHHHHHHHHhcCCC----
Confidence 489999999999988643211 1111222222210 00236789999999999887632
Q ss_pred CCccEEEeccC
Q psy6053 392 HRQSIVHLTSS 402 (614)
Q Consensus 392 ~~~~vyni~~~ 402 (614)
..+++|++.++
T Consensus 226 ~~G~~~~v~gG 236 (242)
T 1uay_A 226 LNGEVVRLDGA 236 (242)
T ss_dssp CCSCEEEESTT
T ss_pred CCCcEEEEcCC
Confidence 36889999887
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=172.69 Aligned_cols=228 Identities=11% Similarity=0.070 Sum_probs=155.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.... .+.++++. .+ ...++.++.+|+
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~~---V~~~~r~~~~~--~~~~~~l~---------~~----~~~~~~~~~~Dl 73 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGAN---VAVIYRSAADA--VEVTEKVG---------KE----FGVKTKAYQCDV 73 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEE---EEEEESSCTTH--HHHHHHHH---------HH----HTCCEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEeCcchhh--HHHHHHHH---------Hh----cCCeeEEEEeeC
Confidence 56899999999999999999999999865 89999965432 22222221 11 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 241 (614)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... +...++
T Consensus 74 ~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~i 147 (265)
T 1h5q_A 74 SNTD------IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSI 147 (265)
T ss_dssp TCHH------HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceE
Confidence 9865 6666554 48999999997532 3456778999999999999988652 224789
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+......-.. +. .....|+.||+..|.+++.... .|++
T Consensus 148 v~~sS~~~~~~~~~~~~-----~~--------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 196 (265)
T 1h5q_A 148 VVTSSMSSQIINQSSLN-----GS--------------------------LTQVFYNSSKAACSNLVKGLAAEWASAGIR 196 (265)
T ss_dssp EEECCGGGTSCCEEETT-----EE--------------------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEeCCchhhcccccccc-----cc--------------------------ccccccHHHHHHHHHHHHHHHHHHHhcCcE
Confidence 99999865432110000 00 0125799999999999887654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.|.++..... .+ .......... ....+++++|+|++++.++..... ...+++|
T Consensus 197 v~~v~Pg~v~t~~~~~~--------~~-~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 256 (265)
T 1h5q_A 197 VNALSPGYVNTDQTAHM--------DK-KIRDHQASNI---------PLNRFAQPEEMTGQAILLLSDHAT--YMTGGEY 256 (265)
T ss_dssp EEEEEECSBCCGGGGGS--------CH-HHHHHHHHTC---------TTSSCBCGGGGHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEecCcccccccccc--------ch-hHHHHHHhcC---------cccCCCCHHHHHHHHHhhccCchh--cCcCcEE
Confidence 99999999987643210 11 1111111110 112367899999999988865431 1367899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 257 ~v~gG 261 (265)
T 1h5q_A 257 FIDGG 261 (265)
T ss_dssp EECTT
T ss_pred EecCC
Confidence 99887
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=178.97 Aligned_cols=245 Identities=16% Similarity=0.163 Sum_probs=167.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||+|+||++++++|++.|.+ |+++.|... ++++..+ .++.. .. ...++.++.+|
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~-~~-~~~~~~~~~~D 71 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAS---VMIVGRNPD------KLAGAVQ-----ELEAL-GA-NGGAIRYEPTD 71 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHTT-CC-SSCEEEEEECC
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHHh-CC-CCceEEEEeCC
Confidence 467899999999999999999999999876 888888642 2222111 11111 11 12378999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
+++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+-.+
T Consensus 72 v~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~ 145 (281)
T 3svt_A 72 ITNED------ETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGS 145 (281)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE
Confidence 99976 6666655 5799999999621 1 3556788999999999999987652 23348
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..|.+.+..+. +|+
T Consensus 146 iv~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi 187 (281)
T 3svt_A 146 FVGISSIAASNTHR--------------------------------------WFGAYGVTKSAVDHLMQLAADELGASWV 187 (281)
T ss_dssp EEEECCHHHHSCCT--------------------------------------TCTHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEeCHHHcCCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhhhcCe
Confidence 99999986543211 125899999999999887654 579
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++..++||.|.++..... ............+. ....+..++|+|++++.++..... -..+++
T Consensus 188 ~vn~v~PG~v~t~~~~~~-------~~~~~~~~~~~~~~---------p~~r~~~~~dva~~~~~l~s~~~~--~itG~~ 249 (281)
T 3svt_A 188 RVNSIRPGLIRTDLVAAI-------TESAELSSDYAMCT---------PLPRQGEVEDVANMAMFLLSDAAS--FVTGQV 249 (281)
T ss_dssp EEEEEEECSBCSGGGHHH-------HTCHHHHHHHHHHC---------SSSSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEEeCcCcCcchhhc-------ccCHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCcccC--CCCCCE
Confidence 999999999977642110 00011111111111 112356799999999988865432 136889
Q ss_pred EEeccCCccccc-HHHHHHHHhhhcccc
Q psy6053 397 VHLTSSQEWQVS-WQEIIDIGKSIVTTE 423 (614)
Q Consensus 397 yni~~~~~~~it-~~e~~~~~~~~~g~~ 423 (614)
+++.++ ..++ ..++.+.+.+.+|.+
T Consensus 250 ~~vdgG--~~~~~~~~~~~~~~~~~~~~ 275 (281)
T 3svt_A 250 INVDGG--QMLRRGPDFSAMLEPVFGRD 275 (281)
T ss_dssp EEESTT--GGGSCCCCCHHHHHHHHCTT
T ss_pred EEeCCC--hhcccCCcchhccccccCCc
Confidence 999888 5555 667888887776654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=172.35 Aligned_cols=226 Identities=15% Similarity=0.178 Sum_probs=155.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ +|+++.|+... +.++++. +.. ...++.++.+|+
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~--~v~~~~r~~~~----~~~~~l~---------~~~---~~~~~~~~~~D~ 64 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLK--NFVILDRVENP----TALAELK---------AIN---PKVNITFHTYDV 64 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCS--EEEEEESSCCH----HHHHHHH---------HHC---TTSEEEEEECCT
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCc--EEEEEecCchH----HHHHHHH---------HhC---CCceEEEEEEec
Confidence 46899999999999999999999999875 37788887532 2222221 111 124789999999
Q ss_pred CCC-CCCCCHHHHHHHhc-------cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc-C-C----CceEEEEe
Q psy6053 180 EAD-ELAIKESDRQLLAS-------EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM-K-H----LELFVHIS 245 (614)
Q Consensus 180 ~~~-~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~-~----~k~~V~vS 245 (614)
+++ + +++.+++ ++|+|||+||... .+.++..+++|+.|+.++++++... . + ..++|++|
T Consensus 65 ~~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~is 137 (254)
T 1sby_A 65 TVPVA------ESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC 137 (254)
T ss_dssp TSCHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred CCChH------HHHHHHHHHHHhcCCCCEEEECCccCC-HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 987 4 4555544 7899999999764 3556788999999999999988752 1 1 35799999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|..+..... ....|+.||+..|.+.+..+. .|++++++
T Consensus 138 S~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v 179 (254)
T 1sby_A 138 SVTGFNAIH--------------------------------------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSI 179 (254)
T ss_dssp CGGGTSCCT--------------------------------------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEE
T ss_pred chhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 987643210 015799999999998877654 48999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
+||.|.++.......|.+... .+..... ...+.+++|+|++++.++... ..+.+|++.+
T Consensus 180 ~Pg~v~t~~~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~dvA~~i~~~~~~~-----~~G~~~~v~g 238 (254)
T 1sby_A 180 NPGITRTPLVHTFNSWLDVEP----RVAELLL------------SHPTQTSEQCGQNFVKAIEAN-----KNGAIWKLDL 238 (254)
T ss_dssp EECSEESHHHHSCCCGGGSCT----THHHHHT------------TSCCEEHHHHHHHHHHHHHHC-----CTTCEEEEET
T ss_pred ecCCccCccccccchhhhhhH----HHHHHHh------------cCCCCCHHHHHHHHHHHHHcC-----CCCCEEEEeC
Confidence 999998764322222211000 0011111 112348999999999888632 2688999988
Q ss_pred CCcccccH
Q psy6053 402 SQEWQVSW 409 (614)
Q Consensus 402 ~~~~~it~ 409 (614)
+...+++|
T Consensus 239 G~~~~~~~ 246 (254)
T 1sby_A 239 GTLEAIEW 246 (254)
T ss_dssp TEEEECCC
T ss_pred CceeEecc
Confidence 74344444
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=172.48 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=151.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeE-EEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKV-LPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v-~~v~gD 178 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+. +++++..+ . ...++ .++.+|
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~--------~~~~~~~~~~~D 66 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGAR---LILIDREA------AALDRAAQ-----E--------LGAAVAARIVAD 66 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----H--------HGGGEEEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----H--------hcccceeEEEEe
Confidence 56899999999999999999999999875 88999863 22222211 0 11345 889999
Q ss_pred CCCCCCCCCHHHHHHHh------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 179 AEADELAIKESDRQLLA------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
+++++ +++.++ .++|+|||+||.... .+.++..+++|+.|+.++++.+... .+.+++|
T Consensus 67 ~~~~~------~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv 140 (254)
T 2wsb_A 67 VTDAE------AMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIV 140 (254)
T ss_dssp TTCHH------HHHHHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCHH------HHHHHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 99865 666655 478999999996532 3556788999999977777655321 2568999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... . .....|+.||+..|.+++.... .|+++
T Consensus 141 ~isS~~~~~~~~----------~--------------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v 184 (254)
T 2wsb_A 141 NLGSMSGTIVNR----------P--------------------------QFASSYMASKGAVHQLTRALAAEWAGRGVRV 184 (254)
T ss_dssp EECCGGGTSCCS----------S--------------------------SCBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEecchhccCCC----------C--------------------------CcchHHHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 999987643211 0 0015799999999999887654 48999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+++|||.|+++.....+ ..+ ........+. ....+++++|+|++++.++..... ...+.+++
T Consensus 185 ~~v~Pg~v~t~~~~~~~------~~~-~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~ 246 (254)
T 2wsb_A 185 NALAPGYVATEMTLKMR------ERP-ELFETWLDMT---------PMGRCGEPSEIAAAALFLASPAAS--YVTGAILA 246 (254)
T ss_dssp EEEEECCBCSHHHHHHH------TCH-HHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEecccCchhhhccc------cCh-HHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCcccc--cccCCEEE
Confidence 99999999876421100 001 1122222111 113478999999999988865331 13578999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 247 v~gG 250 (254)
T 2wsb_A 247 VDGG 250 (254)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8876
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=173.15 Aligned_cols=217 Identities=17% Similarity=0.153 Sum_probs=131.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|.+ |+++.|+.. +++++.+ .+. . ...++.++.+|+
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~----~-~~~~~~~~~~D~ 67 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGAA---VVVADINAE------AAEAVAK-----QIV----A-DGGTAISVAVDV 67 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHH----H-TTCEEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEcCCHH------HHHHHHH-----HHH----h-cCCcEEEEEccC
Confidence 56899999999999999999999999876 888888632 2222111 111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----------hhHHHHHHHHHhHHHHHHHHHHH----HHcCCC
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----------FDEALKKAVLLNTRGTKMMLSLA----KEMKHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----------~~~~~~~~~~~Nv~gt~~ll~la----~~~~~~ 238 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++.+.+ ++ .+.
T Consensus 68 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~ 140 (253)
T 3qiv_A 68 SDPE------SAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTK-RGG 140 (253)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTC
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-cCC
Confidence 9976 6666665 7899999999731 13556788999999966655544 44 256
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+... ...|+.||+..|.+++..+. .
T Consensus 141 g~iv~isS~~~~~~-----------------------------------------~~~Y~asK~a~~~~~~~la~e~~~~ 179 (253)
T 3qiv_A 141 GAIVNQSSTAAWLY-----------------------------------------SNYYGLAKVGINGLTQQLSRELGGR 179 (253)
T ss_dssp EEEEEECC----------------------------------------------------CCHHHHHHHHHHHHHHTTTT
T ss_pred CEEEEECCccccCC-----------------------------------------CchhHHHHHHHHHHHHHHHHHHhhc
Confidence 78999999876421 15799999999988877665 4
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++..++||.|.++..... .+..+...+.++ .....+..++|+|++++.++..... ...+
T Consensus 180 gi~v~~v~PG~v~t~~~~~~--------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~--~~tG 240 (253)
T 3qiv_A 180 NIRINAIAPGPIDTEANRTT--------TPKEMVDDIVKG---------LPLSRMGTPDDLVGMCLFLLSDEAS--WITG 240 (253)
T ss_dssp TEEEEEEEC------------------------------------------------CCHHHHHHHHHHSGGGT--TCCS
T ss_pred CeEEEEEEecCCcccchhhc--------CcHHHHHHHhcc---------CCCCCCCCHHHHHHHHHHHcCcccc--CCCC
Confidence 89999999999987643211 111111111111 1122345689999999988865432 1368
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
++|++.++
T Consensus 241 ~~~~vdgG 248 (253)
T 3qiv_A 241 QIFNVDGG 248 (253)
T ss_dssp CEEEC---
T ss_pred CEEEECCC
Confidence 89999887
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=171.99 Aligned_cols=220 Identities=17% Similarity=0.183 Sum_probs=143.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+|+||||||+||++++++|++.|++ |+++ .|+... .+.+.+.+ +. ...++.++.+|
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~---V~~~~~r~~~~---~~~~~~~~--------~~-----~~~~~~~~~~D 63 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGAN---IVLNGSPASTS---LDATAEEF--------KA-----AGINVVVAKGD 63 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEECTTCSH---HHHHHHHH--------HH-----TTCCEEEEESC
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCcCHHH---HHHHHHHH--------Hh-----cCCcEEEEECC
Confidence 46799999999999999999999999875 7777 444321 12221111 10 23568999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++
T Consensus 64 ~~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~i 137 (247)
T 2hq1_A 64 VKNPE------DVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKI 137 (247)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 99865 6666665 78999999997542 2345678899999998888877642 256799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..|.+++.... .|++
T Consensus 138 v~~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 179 (247)
T 2hq1_A 138 INITSIAGIIGN----------A----------------------------GQANYAASKAGLIGFTKSIAKEFAAKGIY 179 (247)
T ss_dssp EEECC-----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcChhhccCC----------C----------------------------CCcHhHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 999998542211 0 015799999999998887654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+++++||.+.++.... . +.........+ .....+++++|+|++++.++..... ...+++|
T Consensus 180 v~~v~Pg~v~t~~~~~-------~--~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 239 (247)
T 2hq1_A 180 CNAVAPGIIKTDMTDV-------L--PDKVKEMYLNN---------IPLKRFGTPEEVANVVGFLASDDSN--YITGQVI 239 (247)
T ss_dssp EEEEEECSBCCHHHHT-------S--CHHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEEEEEeccchhh-------c--chHHHHHHHhh---------CCCCCCCCHHHHHHHHHHHcCcccc--cccCcEE
Confidence 9999999886542211 0 11111112221 1123578999999999888765431 1257899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
|+.++
T Consensus 240 ~v~gG 244 (247)
T 2hq1_A 240 NIDGG 244 (247)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 99876
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=169.59 Aligned_cols=219 Identities=15% Similarity=0.172 Sum_probs=154.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+++||||+|+||++++++|++.|.+ |+++.|... +++++..+ .++ . ...++.++.+|++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~---V~~~~~~~~-----~~~~~~~~-----~~~----~-~~~~~~~~~~Dv~ 64 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYN---VAVNYAGSK-----EKAEAVVE-----EIK----A-KGVDSFAIQANVA 64 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCH-----HHHHHHHH-----HHH----H-TTSCEEEEECCTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCCH-----HHHHHHHH-----HHH----h-cCCcEEEEEccCC
Confidence 5789999999999999999999999876 777777532 22222111 111 1 3357889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLA----KEMKHLELFV 242 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V 242 (614)
+++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+ ++ .+..++|
T Consensus 65 d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv 137 (246)
T 3osu_A 65 DAD------EVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLR-QRSGAII 137 (246)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCCEEE
Confidence 866 6766665 7899999999753 23567788999999999999988 44 3567999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 138 ~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 179 (246)
T 3osu_A 138 NLSSVVGAVGNP--------------------------------------GQANYVATKAGVIGLTKSAARELASRGITV 179 (246)
T ss_dssp EECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 999986532210 015799999988888776554 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++..... ..........+. ....+...+|+|++++.++..... ...+++++
T Consensus 180 n~v~PG~v~t~~~~~~---------~~~~~~~~~~~~---------p~~r~~~~~dva~~v~~l~s~~~~--~itG~~i~ 239 (246)
T 3osu_A 180 NAVAPGFIVSDMTDAL---------SDELKEQMLTQI---------PLARFGQDTDIANTVAFLASDKAK--YITGQTIH 239 (246)
T ss_dssp EEEEECSBGGGCCSCS---------CHHHHHHHHTTC---------TTCSCBCHHHHHHHHHHHTSGGGT--TCCSCEEE
T ss_pred EEEEECCCcCCccccc---------CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--CCCCCEEE
Confidence 9999999987654321 112222222221 123466789999999988865432 13588999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 240 vdgG 243 (246)
T 3osu_A 240 VNGG 243 (246)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 9876
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=171.85 Aligned_cols=219 Identities=13% Similarity=0.139 Sum_probs=150.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
||+|+||||||+||++++++|++.|++ |+++ .|+... .+.+.+. ++. ...++.++.+|++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~---v~~~~~r~~~~---~~~~~~~--------~~~-----~~~~~~~~~~D~~ 61 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCK---VLVNYARSAKA---AEEVSKQ--------IEA-----YGGQAITFGGDVS 61 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHHH---HHHHHHH--------HHH-----HTCEEEEEECCTT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEcCCCHHH---HHHHHHH--------HHh-----cCCcEEEEeCCCC
Confidence 578999999999999999999999876 6764 565311 1122111 111 2247889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 62 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 135 (244)
T 1edo_A 62 KEA------DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIIN 135 (244)
T ss_dssp SHH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 865 6777665 68999999997542 3566788999999999999888652 25679999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... | ....|+.||+..|.+.+.... .|++++
T Consensus 136 ~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 177 (244)
T 1edo_A 136 IASVVGLIGN----------I----------------------------GQANYAAAKAGVIGFSKTAAREGASRNINVN 177 (244)
T ss_dssp ECCTHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred ECChhhcCCC----------C----------------------------CCccchhhHHHHHHHHHHHHHHhhhcCCEEE
Confidence 9998653211 0 015799999988888776554 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
++|||.|.++.... ..+ .......... ....+++++|+|++++.++..+.. ....+++|++
T Consensus 178 ~v~Pg~v~t~~~~~--------~~~-~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~-~~~~G~~~~v 238 (244)
T 1edo_A 178 VVCPGFIASDMTAK--------LGE-DMEKKILGTI---------PLGRTGQPENVAGLVEFLALSPAA-SYITGQAFTI 238 (244)
T ss_dssp EEEECSBCSHHHHT--------TCH-HHHHHHHTSC---------TTCSCBCHHHHHHHHHHHHHCSGG-GGCCSCEEEE
T ss_pred EEeeCccccchhhh--------cCh-HHHHHHhhcC---------CCCCCCCHHHHHHHHHHHhCCCcc-CCcCCCEEEe
Confidence 99999997763211 011 1111111111 112478999999999988854321 0125789998
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 239 ~gG 241 (244)
T 1edo_A 239 DGG 241 (244)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-18 Score=169.32 Aligned_cols=211 Identities=13% Similarity=0.122 Sum_probs=150.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|.. +++++..+ + ...++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D~ 62 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAK---VVFGDILD------EEGKAMAA---------E----LADAARYVHLDV 62 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----TGGGEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----hhcCceEEEecC
Confidence 56899999999999999999999999876 88888863 22222111 0 123578899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+ ++ .+..++
T Consensus 63 ~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~i 135 (260)
T 1nff_A 63 TQPA------QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKE-AGRGSI 135 (260)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCEE
Confidence 9865 6777766 79999999996532 3567788999999996665554 44 256799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+..+. .|++
T Consensus 136 v~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 177 (260)
T 1nff_A 136 INISSIEGLAGTV--------------------------------------ACHGYTATKFAVRGLTKSTALELGPSGIR 177 (260)
T ss_dssp EEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeehhhcCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhCccCcE
Confidence 9999987643210 014799999999998877654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.|.++... +... ... ......+.+++|+|++++.++..... ...+++|
T Consensus 178 v~~v~Pg~v~t~~~~----~~~~--------------~~~-----~~~~~~~~~~~dvA~~v~~l~s~~~~--~~~G~~~ 232 (260)
T 1nff_A 178 VNSIHPGLVKTPMTD----WVPE--------------DIF-----QTALGRAAEPVEVSNLVVYLASDESS--YSTGAEF 232 (260)
T ss_dssp EEEEEECCBCSGGGT----TSCT--------------TCS-----CCSSSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeCCCCCCccc----cchh--------------hHH-----hCccCCCCCHHHHHHHHHHHhCcccc--CCcCCEE
Confidence 999999999887432 1000 000 00112467899999999988865331 1257899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 233 ~v~gG 237 (260)
T 1nff_A 233 VVDGG 237 (260)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-18 Score=169.18 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=150.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|++ |+++.|.... +.+.+. . .+ .++.+|+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~----~~~~~~----------------~-~~-~~~~~D~ 58 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGAL---VALCDLRPEG----KEVAEA----------------I-GG-AFFQVDL 58 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSTTH----HHHHHH----------------H-TC-EEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCChhH----HHHHHH----------------h-hC-CEEEeeC
Confidence 46899999999999999999999999875 8888987532 111110 1 13 6789999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 59 ~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv 132 (256)
T 2d1y_A 59 EDER------ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIV 132 (256)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9865 6666554 68999999996532 3467788999999999999887542 3567999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..|.+.+..+. .|+++
T Consensus 133 ~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 174 (256)
T 2d1y_A 133 NVASVQGLFAE----------Q----------------------------ENAAYNASKGGLVNLTRSLALDLAPLRIRV 174 (256)
T ss_dssp EECCGGGTSBC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEccccccCCC----------C----------------------------CChhHHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 99998653221 0 015799999999998877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
.+++||.|.++... .+.... ...+..............+++++|+|++++.++..... ...+++++
T Consensus 175 ~~v~Pg~v~t~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~--~~~G~~~~ 240 (256)
T 2d1y_A 175 NAVAPGAIATEAVL---EAIALS---------PDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKAS--FITGAILP 240 (256)
T ss_dssp EEEEECSBCCHHHH---HHHC-----------------CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCCccCchhh---hccccc---------cCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhc--CCCCCEEE
Confidence 99999988654210 000000 00000000001112234578999999999988865431 13678999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 241 v~gG 244 (256)
T 2d1y_A 241 VDGG 244 (256)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9888
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=170.65 Aligned_cols=223 Identities=15% Similarity=0.105 Sum_probs=152.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|... ++++++.+ .++. ...++.++.+|+
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~---V~~~~r~~~-----~~~~~~~~-----~l~~-----~~~~~~~~~~D~ 66 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAK---VVVNYRSKE-----DEANSVLE-----EIKK-----VGGEAIAVKGDV 66 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCH-----HHHHHHHH-----HHHH-----TTCEEEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEcCCCh-----HHHHHHHH-----HHHh-----cCCceEEEECCC
Confidence 56899999999999999999999999875 888888321 12222111 1111 235788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~ 241 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+ ..++
T Consensus 67 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~i 140 (261)
T 1gee_A 67 TVES------DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTV 140 (261)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEE
Confidence 9865 6666665 78999999996532 3556788999999999988876652 23 5799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..|.+.+.... .|++
T Consensus 141 v~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 182 (261)
T 1gee_A 141 INMSSVHEKIPW----------P----------------------------LFVHYAASKGGMKLMTETLALEYAPKGIR 182 (261)
T ss_dssp EEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEeCCHHhcCCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999998653211 0 015799999888887766544 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.|.++..... . ..+ .....+... .....+++++|+|++++.++..... ...++++
T Consensus 183 v~~v~Pg~v~t~~~~~~---~---~~~-~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 244 (261)
T 1gee_A 183 VNNIGPGAINTPINAEK---F---ADP-EQRADVESM---------IPMGYIGEPEEIAAVAAWLASSEAS--YVTGITL 244 (261)
T ss_dssp EEEEEECSBCSGGGHHH---H---HSH-HHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCCcCCchhhhc---c---cCh-hHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc--CCCCcEE
Confidence 99999999987642100 0 001 111111111 0113478999999999988864321 1357899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 245 ~v~gg 249 (261)
T 1gee_A 245 FADGG 249 (261)
T ss_dssp EESTT
T ss_pred EEcCC
Confidence 99887
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-18 Score=170.68 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=152.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.. .+..+++.. ...++.++.+|+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~---V~~~~r~~~----~~~~~~l~~--------------~~~~~~~~~~D~ 60 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGAN---IVLNGFGDP----APALAEIAR--------------HGVKAVHHPADL 60 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEECSSCC----HHHHHHHHT--------------TSCCEEEECCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCch----HHHHHHHHh--------------cCCceEEEeCCC
Confidence 46899999999999999999999999875 888888754 111222110 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++.+.+ ++ .+..++
T Consensus 61 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-~~~g~i 133 (255)
T 2q2v_A 61 SDVA------QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRA-RNWGRI 133 (255)
T ss_dssp TSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCcEE
Confidence 9865 7777766 79999999996432 3567788999999877766655 44 356899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. .|++
T Consensus 134 v~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 175 (255)
T 2q2v_A 134 INIASVHGLVGST--------------------------------------GKAAYVAAKHGVVGLTKVVGLETATSNVT 175 (255)
T ss_dssp EEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHTTTSSEE
T ss_pred EEEcCchhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCcE
Confidence 9999987643210 015799999999998877654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++++|||.|.++.......-.+...+ ......... ........+++++|+|++++.++..... ...+++
T Consensus 176 v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~ 245 (255)
T 2q2v_A 176 CNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLL--------AEKQPSLAFVTPEHLGELVLFLCSEAGS--QVRGAA 245 (255)
T ss_dssp EEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHH--------TTTCTTCCCBCHHHHHHHHHHHTSGGGT--TCCSCE
T ss_pred EEEEeeCCCcCcchhhhcccccccccchHHHHHHHH--------hccCCCCCCcCHHHHHHHHHHHhCCccC--CCCCCE
Confidence 99999999977532100000000000 000001110 1111223588999999999988765432 125789
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 246 ~~vdgG 251 (255)
T 2q2v_A 246 WNVDGG 251 (255)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999877
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-18 Score=170.02 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=154.4
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+|+||||| |+||++++++|++.|++ |+++.|+.. ..+.++++.+ ...++.++.+
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~---V~~~~r~~~---~~~~~~~l~~--------------~~~~~~~~~~ 65 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAE---VALSYQAER---LRPEAEKLAE--------------ALGGALLFRA 65 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCE---EEEEESCGG---GHHHHHHHHH--------------HTTCCEEEEC
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCE---EEEEcCCHH---HHHHHHHHHH--------------hcCCcEEEEC
Confidence 568999999999 99999999999999876 888888753 2233333211 1123688999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-CCC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-KHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~ 238 (614)
|+++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+-
T Consensus 66 D~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 139 (261)
T 2wyu_A 66 DVTQDE------ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG 139 (261)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 999865 6666655 68999999997542 3557788999999999999999763 112
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..|.+.+..+. +
T Consensus 140 g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~ 181 (261)
T 2wyu_A 140 GGIVTLTYYASEKVV----------P----------------------------KYNVMAIAKAALEASVRYLAYELGPK 181 (261)
T ss_dssp EEEEEEECGGGTSBC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEecccccCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 489999997653211 0 014799999999998877654 4
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++++++||.|.++..... .........+.... ....+.+++|+|++++.++..... ...+
T Consensus 182 gi~v~~v~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~---------p~~~~~~~~dva~~v~~l~s~~~~--~~tG 243 (261)
T 2wyu_A 182 GVRVNAISAGPVRTVAARSI-------PGFTKMYDRVAQTA---------PLRRNITQEEVGNLGLFLLSPLAS--GITG 243 (261)
T ss_dssp TCEEEEEEECCCCCTGGGGC-------TTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CcEEEEEeeCCCcCchhhhc-------cccHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcChhhc--CCCC
Confidence 89999999999987643211 11111222221111 012356899999999988854332 1357
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.++
T Consensus 244 ~~~~vdgG 251 (261)
T 2wyu_A 244 EVVYVDAG 251 (261)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 89999887
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=170.89 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=154.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|... ++++..+ .++. ...++.++.+|+
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~D~ 67 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGAS---VYTCSRNQK------ELNDCLT-----QWRS-----KGFKVEASVCDL 67 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHH-----TTCEEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHh-----cCCcEEEEEcCC
Confidence 56899999999999999999999999876 888888642 2222111 1111 224788999999
Q ss_pred CCCCCCCCHHHHHHHh--------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLA--------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~--------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.++ .++|++||+||.... .+.++..+++|+.|+.++++++... .+..++
T Consensus 68 ~~~~------~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~i 141 (260)
T 2ae2_A 68 SSRS------ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNV 141 (260)
T ss_dssp TCHH------HHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 666665 469999999996532 3567788999999999999988431 356899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..|.+.+..+. .|++
T Consensus 142 v~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 183 (260)
T 2ae2_A 142 VFISSVSGALAV----------P----------------------------YEAVYGATKGAMDQLTRCLAFEWAKDNIR 183 (260)
T ss_dssp EEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred EEEcchhhccCC----------C----------------------------CcchHHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 999998653221 0 015799999999999887654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchH--HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPT--GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~--~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++++||.|.++... .+. ..+. ..+...... .....+.+++|+|++++.++..... ...++
T Consensus 184 v~~v~Pg~v~t~~~~---~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~v~~l~s~~~~--~~tG~ 246 (260)
T 2ae2_A 184 VNGVGPGVIATSLVE---MTI---QDPEQKENLNKLIDR---------CALRRMGEPKELAAMVAFLCFPAAS--YVTGQ 246 (260)
T ss_dssp EEEEEECSBCSHHHH---HHT---TSHHHHHHHHHHHHT---------STTCSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEEecCCCCCcchh---hhc---cChhhHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccc--CCCCC
Confidence 999999988665311 000 0110 111111111 1123478999999999988754331 13678
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 247 ~~~vdgG 253 (260)
T 2ae2_A 247 IIYVDGG 253 (260)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999877
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=166.86 Aligned_cols=220 Identities=16% Similarity=0.126 Sum_probs=157.2
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
...+++|+++||||+|+||++++++|++.|.+ |+++.|+.... .+-.++ ...++.++.
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~~~--~~~~~~-----------------~~~~~~~~~ 63 (271)
T 3tzq_B 6 TAELENKVAIITGACGGIGLETSRVLARAGAR---VVLADLPETDL--AGAAAS-----------------VGRGAVHHV 63 (271)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECTTSCH--HHHHHH-----------------HCTTCEEEE
T ss_pred CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEcCCHHHH--HHHHHH-----------------hCCCeEEEE
Confidence 34467899999999999999999999999875 88888876432 211111 124678899
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh---------hHHHHHHHHHhHHHHHHHHHHH----HHcC
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF---------DEALKKAVLLNTRGTKMMLSLA----KEMK 236 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~---------~~~~~~~~~~Nv~gt~~ll~la----~~~~ 236 (614)
+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+ ++ .
T Consensus 64 ~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~ 136 (271)
T 3tzq_B 64 VDLTNEV------SVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLIS-A 136 (271)
T ss_dssp CCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred CCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-c
Confidence 9999866 6777665 78999999997522 3556788999999999999988 44 3
Q ss_pred CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---
Q psy6053 237 HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--- 313 (614)
Q Consensus 237 ~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--- 313 (614)
+..++|++||..+..... ....|+.||+..|.+.+..+.
T Consensus 137 ~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~ 178 (271)
T 3tzq_B 137 GGGAIVNISSATAHAAYD--------------------------------------MSTAYACTKAAIETLTRYVATQYG 178 (271)
T ss_dssp TCEEEEEECCGGGTSBCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCEEEEECCHHHcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999986643211 015799999999988877655
Q ss_pred -CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
+|+++..++||.|.++.... .. +........... ....+...+|+|++++.++..... -.
T Consensus 179 ~~gi~vn~v~PG~v~t~~~~~------~~--~~~~~~~~~~~~---------~~~r~~~p~dvA~~v~~L~s~~~~--~i 239 (271)
T 3tzq_B 179 RHGVRCNAIAPGLVRTPRLEV------GL--PQPIVDIFATHH---------LAGRIGEPHEIAELVCFLASDRAA--FI 239 (271)
T ss_dssp GGTEEEEEEEECCBCCTTTC-----------CHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGT--TC
T ss_pred hcCEEEEEEEeCCCcCccccc------cC--CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccC--Cc
Confidence 58999999999998764321 10 112222222211 112356789999999988865432 13
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.++++++.++
T Consensus 240 tG~~i~vdGG 249 (271)
T 3tzq_B 240 TGQVIAADSG 249 (271)
T ss_dssp CSCEEEESTT
T ss_pred CCCEEEECCC
Confidence 6889999877
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=175.09 Aligned_cols=231 Identities=16% Similarity=0.115 Sum_probs=155.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.. ++++..+ .+... ...++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~~~D~ 66 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAH---IVLVARQVD------RLHEAAR-----SLKEK----FGVRVLEVAVDV 66 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHH----HCCCEEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCHH------HHHHHHH-----HHHHh----cCCceEEEEcCC
Confidence 56899999999999999999999999875 888888632 2222111 11110 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++.+... .+..++|
T Consensus 67 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 140 (263)
T 3ai3_A 67 ATPE------GVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAII 140 (263)
T ss_dssp TSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 6766665 7899999999653 23567788999999999998887531 2567999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..|.+.+..+. .|+++
T Consensus 141 ~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 182 (263)
T 3ai3_A 141 HNASICAVQPLW--------------------------------------YEPIYNVTKAALMMFSKTLATEVIKDNIRV 182 (263)
T ss_dssp EECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECchhhcCCCC--------------------------------------CcchHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 999997643210 014799999999998877654 58999
Q ss_pred EEeecceeecccCCCC-ccccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 319 LMLRPSIIIPVWREPL-PGWTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~-~gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++|||.|.++..... +.+...... ..........+. .....+.+++|+|++++.++..... ...+++
T Consensus 183 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~p~~~~~~~~dvA~~~~~l~s~~~~--~~~G~~ 252 (263)
T 3ai3_A 183 NCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH--------APIKRFASPEELANFFVFLCSERAT--YSVGSA 252 (263)
T ss_dssp EEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH--------CTTCSCBCHHHHHHHHHHHTSTTCT--TCCSCE
T ss_pred EEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC--------CCCCCCcCHHHHHHHHHHHcCcccc--CCCCcE
Confidence 9999999987642110 000000000 011111111110 1123578999999999988754321 125789
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
|++.++
T Consensus 253 ~~vdgG 258 (263)
T 3ai3_A 253 YFVDGG 258 (263)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-18 Score=170.98 Aligned_cols=237 Identities=16% Similarity=0.161 Sum_probs=159.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc------CHHHHHHHHHhChhhHHhhhhccccccCeEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK------NARQRIEELFASPLFNLLKSVHGQKIIDKVL 173 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~------~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~ 173 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|+.... ...+++++..+ .+. . ...++.
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~~~~~~ 74 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAGAD---IAICDRCENSDVVGYPLATADDLAETVA-----LVE----K-TGRRCI 74 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSCCTTCSSCCCCHHHHHHHHH-----HHH----H-TTCCEE
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe---EEEEeCCccccccccccccHHHHHHHHH-----HHH----h-cCCeEE
Confidence 67899999999999999999999999876 88889874321 01233332211 111 1 335789
Q ss_pred EEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---C
Q psy6053 174 PISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM---K 236 (614)
Q Consensus 174 ~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~ 236 (614)
++.+|+++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++++... .
T Consensus 75 ~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~ 148 (281)
T 3s55_A 75 SAKVDVKDRA------ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR 148 (281)
T ss_dssp EEECCTTCHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 9999999976 6666665 7899999999753 24567888999999999999986431 2
Q ss_pred CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---
Q psy6053 237 HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--- 313 (614)
Q Consensus 237 ~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--- 313 (614)
+..++|++||..+..... ....|+.||+..+.+.+..+.
T Consensus 149 ~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~ 190 (281)
T 3s55_A 149 NYGRIVTVSSMLGHSANF--------------------------------------AQASYVSSKWGVIGLTKCAAHDLV 190 (281)
T ss_dssp TCEEEEEECCGGGGSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTG
T ss_pred CCCEEEEECChhhcCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHh
Confidence 457899999987643211 015799999999988877655
Q ss_pred -CCCCEEEeecceeecccCCCCc---cccCCCCch-HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhh
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLP---GWTDNINGP-TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~---gw~d~~~g~-~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~ 388 (614)
+|+++..++||.|.++...+.. .+......+ ..-...... ........+..++|+|++++.++.....
T Consensus 191 ~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~p~dvA~~v~~L~s~~~~ 263 (281)
T 3s55_A 191 GYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFA-------SLHLQYAPFLKPEEVTRAVLFLVDEASS 263 (281)
T ss_dssp GGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHHH-------HHCSSSCSCBCHHHHHHHHHHHHSGGGT
T ss_pred hcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHHH-------hhhccCcCCCCHHHHHHHHHHHcCCccc
Confidence 5899999999999887543100 000000000 000000000 0111225688999999999998865432
Q ss_pred cCCCCccEEEeccC
Q psy6053 389 QKEHRQSIVHLTSS 402 (614)
Q Consensus 389 ~~~~~~~vyni~~~ 402 (614)
...++++++.++
T Consensus 264 --~itG~~i~vdgG 275 (281)
T 3s55_A 264 --HITGTVLPIDAG 275 (281)
T ss_dssp --TCCSCEEEESTT
T ss_pred --CCCCCEEEECCC
Confidence 135889999888
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=168.08 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=150.3
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
....++|+||||||||+||++++++|++.|++ |+++.|+. ++++++.+ + ...++.++.
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~ 66 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSK---VIISGSNE------EKLKSLGN---------A----LKDNYTIEV 66 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HCSSEEEEE
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEcCCH------HHHHHHHH---------H----hccCccEEE
Confidence 34577899999999999999999999999865 88888853 23332211 0 224788999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 177 GDAEADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 67 ~D~~~~~------~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~ 140 (249)
T 3f9i_A 67 CNLANKE------ECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIIN 140 (249)
T ss_dssp CCTTSHH------HHHHHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCHH------HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 9999865 6777776 68999999997542 2446778999999999998877431 24568999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+..|.+++..+. +|+++.
T Consensus 141 isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 182 (249)
T 3f9i_A 141 ISSIVGIAGNP--------------------------------------GQANYCASKAGLIGMTKSLSYEVATRGITVN 182 (249)
T ss_dssp ECCCCC--CCS--------------------------------------CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EccHHhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEE
Confidence 99986643210 015799999988888776554 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
+++||.|.++..... .+ ........ ......+..++|+|++++.++..... ...++++++
T Consensus 183 ~v~PG~v~t~~~~~~--------~~-~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~s~~~~--~~tG~~~~v 242 (249)
T 3f9i_A 183 AVAPGFIKSDMTDKL--------NE-KQREAIVQ---------KIPLGTYGIPEDVAYAVAFLASNNAS--YITGQTLHV 242 (249)
T ss_dssp EEEECCBC------C--------CH-HHHHHHHH---------HCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EEecCccccCccccc--------CH-HHHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCCccC--CccCcEEEE
Confidence 999999976543211 11 11111111 11223577899999999988865432 136889999
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 243 dgG 245 (249)
T 3f9i_A 243 NGG 245 (249)
T ss_dssp STT
T ss_pred CCC
Confidence 877
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-18 Score=170.83 Aligned_cols=221 Identities=12% Similarity=0.089 Sum_probs=155.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|.... .+.+.+. ++ . ...++.++.+|+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~---~~~~~~~--------~~----~-~~~~~~~~~~Dv 70 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGAS---VVVTDLKSEG---AEAVAAA--------IR----Q-AGGKAIGLECNV 70 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTCE---EEEEESSHHH---HHHHHHH--------HH----H-TTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHH--------HH----h-cCCcEEEEECCC
Confidence 67899999999999999999999999876 8888886421 1222111 11 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 71 ~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~ 144 (256)
T 3gaf_A 71 TDEQ------HREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILN 144 (256)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9876 6666654 78999999997532 3567788999999999999987431 34569999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+..|.+.+..+. +|+++.
T Consensus 145 isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn 186 (256)
T 3gaf_A 145 ISSMAGENTNV--------------------------------------RMASYGSSKAAVNHLTRNIAFDVGPMGIRVN 186 (256)
T ss_dssp ECCGGGTCCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcCHHHcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEE
Confidence 99987642210 015799999999988877654 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.|.++.... ... .......... .....+..++|+|++++.++..... -..++++++
T Consensus 187 ~v~PG~v~T~~~~~-------~~~-~~~~~~~~~~---------~p~~r~~~~~dva~~~~~L~s~~~~--~itG~~i~v 247 (256)
T 3gaf_A 187 AIAPGAIKTDALAT-------VLT-PEIERAMLKH---------TPLGRLGEAQDIANAALFLCSPAAA--WISGQVLTV 247 (256)
T ss_dssp EEEECCBCCHHHHH-------HCC-HHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EEEEccccCchhhh-------ccC-HHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCCccc--CccCCEEEE
Confidence 99999886652110 000 1111122221 1223467899999999998865432 136889999
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 248 dgG 250 (256)
T 3gaf_A 248 SGG 250 (256)
T ss_dssp STT
T ss_pred CCC
Confidence 888
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=170.03 Aligned_cols=216 Identities=13% Similarity=0.135 Sum_probs=151.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.... .+-.++ ...++.++.+|+
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~---V~~~~r~~~~~--~~~~~~-----------------~~~~~~~~~~D~ 67 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGAS---AVLLDLPNSGG--EAQAKK-----------------LGNNCVFAPADV 67 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECTTSSH--HHHHHH-----------------HCTTEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCcHhH--HHHHHH-----------------hCCceEEEEcCC
Confidence 56899999999999999999999999876 88999976431 111111 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------------hhHHHHHHHHHhHHHHHHHHHHHHHc---C
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------------FDEALKKAVLLNTRGTKMMLSLAKEM---K 236 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------------~~~~~~~~~~~Nv~gt~~ll~la~~~---~ 236 (614)
++++ +++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... .
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~ 141 (265)
T 2o23_A 68 TSEK------DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQN 141 (265)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 9865 6777665 7999999999652 23457788999999999999988763 1
Q ss_pred ------CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH
Q psy6053 237 ------HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE 310 (614)
Q Consensus 237 ------~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~ 310 (614)
+..++|++||.++..... ....|+.||+..|.+.+.
T Consensus 142 ~~~~~~~~~~iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~ 183 (265)
T 2o23_A 142 EPDQGGQRGVIINTASVAAFEGQV--------------------------------------GQAAYSASKGGIVGMTLP 183 (265)
T ss_dssp CCCTTSCCEEEEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEEeCChhhcCCCC--------------------------------------CCchhHHHHHHHHHHHHH
Confidence 457899999987643210 015799999988888776
Q ss_pred Hhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 311 AMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 311 ~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
... .|+++++++||.|.++.....+ ........... + ....++.++|+|++++.++...
T Consensus 184 la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---------~~~~~~~~~~~----~----~~~~~~~~~dva~~~~~l~~~~ 246 (265)
T 2o23_A 184 IARDLAPIGIRVMTIAPGLFGTPLLTSLP---------EKVCNFLASQV----P----FPSRLGDPAEYAHLVQAIIENP 246 (265)
T ss_dssp HHHHHGGGTEEEEEEEECCBCCC-------------------CHHHHTC----S----SSCSCBCHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcCcEEEEEEeccccCccccccC---------HHHHHHHHHcC----C----CcCCCCCHHHHHHHHHHHhhcC
Confidence 554 5899999999998665321110 00000001100 0 0023678999999999988543
Q ss_pred hhcCCCCccEEEeccC
Q psy6053 387 LSQKEHRQSIVHLTSS 402 (614)
Q Consensus 387 ~~~~~~~~~vyni~~~ 402 (614)
. ..++++++.++
T Consensus 247 ~----~~G~~i~vdgG 258 (265)
T 2o23_A 247 F----LNGEVIRLDGA 258 (265)
T ss_dssp T----CCSCEEEESTT
T ss_pred c----cCceEEEECCC
Confidence 3 36788988776
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-18 Score=169.37 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=153.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|++ |+++.|.. +++++..+. ...++.++.+|+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~D~ 67 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGAT---VAIADLDV------MAAQAVVAG-------------LENGGFAVEVDV 67 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHT-------------CTTCCEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHHH-------------HhcCCeEEEEeC
Confidence 46899999999999999999999999875 88888863 223322110 223678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~ 241 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++
T Consensus 68 ~d~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~i 141 (263)
T 3ak4_A 68 TKRA------SVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVI 141 (263)
T ss_dssp TCHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9865 6777665 79999999996532 2467788999999999999887652 13 5799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..|.+.+..+. .|++
T Consensus 142 v~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 183 (263)
T 3ak4_A 142 VNTASLAAKVGA----------P----------------------------LLAHYSASKFAVFGWTQALAREMAPKNIR 183 (263)
T ss_dssp EEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEecccccccCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHHhHcCeE
Confidence 999998653221 0 015799999999988877654 5999
Q ss_pred EEEeecceeecccCCCCcccc--CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 318 CLMLRPSIIIPVWREPLPGWT--DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~--d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++++|||.|.++.......|. ..-..+.........+ .....+++++|+|++++.++..... ...++
T Consensus 184 v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~~dvA~~v~~l~s~~~~--~~tG~ 252 (263)
T 3ak4_A 184 VNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSL---------TPLGRIEEPEDVADVVVFLASDAAR--FMTGQ 252 (263)
T ss_dssp EEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEEecccccChhhhhhccccccccccCcHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc--CCCCC
Confidence 999999999765321000000 0000000111111111 1123478999999999988865431 13678
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 253 ~~~vdgG 259 (263)
T 3ak4_A 253 GINVTGG 259 (263)
T ss_dssp EEEESSS
T ss_pred EEEECcC
Confidence 9999877
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=165.98 Aligned_cols=198 Identities=15% Similarity=0.156 Sum_probs=143.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCc----cEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNV----KKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v----~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+|+|+||||||+||++++++|++.|+.- .+|+++.|+. ++++++.+ .++ . ...++.++.+
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~------~~~~~~~~-----~~~----~-~~~~~~~~~~ 65 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA------ADLEKISL-----ECR----A-EGALTDTITA 65 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH------HHHHHHHH-----HHH----T-TTCEEEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH------HHHHHHHH-----HHH----c-cCCeeeEEEe
Confidence 6899999999999999999999998710 0488888863 22222111 111 1 2357899999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
|+++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..+
T Consensus 66 D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ 139 (244)
T 2bd0_A 66 DISDMA------DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGH 139 (244)
T ss_dssp CTTSHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred cCCCHH------HHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCE
Confidence 999865 6666665 69999999996532 3567788999999999999887531 25679
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..|.+++.... .|+
T Consensus 140 iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi 181 (244)
T 2bd0_A 140 IFFITSVAATKAFR--------------------------------------HSSIYCMSKFGQRGLVETMRLYARKCNV 181 (244)
T ss_dssp EEEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTTE
T ss_pred EEEEecchhcCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhhccCc
Confidence 99999987643210 015799999999998865543 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+++++|||.|.++.....+ . .. ...+++++|+|++++.++...
T Consensus 182 ~v~~v~Pg~v~t~~~~~~~-------~-------------------~~-~~~~~~~~dva~~~~~l~~~~ 224 (244)
T 2bd0_A 182 RITDVQPGAVYTPMWGKVD-------D-------------------EM-QALMMMPEDIAAPVVQAYLQP 224 (244)
T ss_dssp EEEEEEECCBCSTTTCCCC-------S-------------------TT-GGGSBCHHHHHHHHHHHHTSC
T ss_pred EEEEEECCCccchhhhhcc-------c-------------------cc-cccCCCHHHHHHHHHHHHhCC
Confidence 9999999999886432110 0 00 135789999999999988654
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=170.76 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=145.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE-EeCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP-ISGDA 179 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~-v~gDl 179 (614)
+|+|+||||||+||++++++|++.|++ |+++ .|+.. +++++.+ .++. ...++.. +.+|+
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~---v~~~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~~D~ 61 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFA---LAIHYGQNRE------KAEEVAE-----EARR-----RGSPLVAVLGANL 61 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCE---EEEEESSCHH------HHHHHHH-----HHHH-----TTCSCEEEEECCT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEcCCCHH------HHHHHHH-----HHHh-----cCCceEEEEeccC
Confidence 478999999999999999999999876 7776 66532 2222110 1111 1234566 89999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHH----HHHHHHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMM----LSLAKEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~l----l~la~~~~~~k~~ 241 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++ ++.+++ .+.+++
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~~~i 134 (245)
T 2ph3_A 62 LEAE------AATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMK-ARFGRI 134 (245)
T ss_dssp TSHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHh-cCCCEE
Confidence 9865 6666543 79999999996532 345678899999995554 455555 367899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+.... .|++
T Consensus 135 v~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 176 (245)
T 2ph3_A 135 VNITSVVGILGNP--------------------------------------GQANYVASKAGLIGFTRAVAKEYAQRGIT 176 (245)
T ss_dssp EEECCTHHHHCCS--------------------------------------SBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeChhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHHHcCeE
Confidence 9999985432210 015799999988888876654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.|.++.... . +.........+. ....+++++|+|++++.++..... ...+++|
T Consensus 177 v~~v~Pg~v~t~~~~~-------~--~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 236 (245)
T 2ph3_A 177 VNAVAPGFIETEMTER-------L--PQEVKEAYLKQI---------PAGRFGRPEEVAEAVAFLVSEKAG--YITGQTL 236 (245)
T ss_dssp EEEEEECSBCCHHHHT-------S--CHHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEEEEEeecCcchhh-------c--CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--cccCCEE
Confidence 9999999997764321 1 111111221111 123578999999999988865321 1257899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 237 ~v~gg 241 (245)
T 2ph3_A 237 CVDGG 241 (245)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99876
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=170.62 Aligned_cols=234 Identities=15% Similarity=0.151 Sum_probs=153.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+.+|++|||||+|+||++++++|++.|.+ |+++.|... +++++..+ .+.. . ...++.++.+|+
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G~~---V~~~~r~~~-----~~~~~~~~-----~~~~-~---~~~~~~~~~~Dv 85 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAGAN---IVLNGFGAP-----DEIRTVTD-----EVAG-L---SSGTVLHHPADM 85 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEECCCCH-----HHHHHHHH-----HHHT-T---CSSCEEEECCCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCCh-----HHHHHHHH-----HHhh-c---cCCcEEEEeCCC
Confidence 56899999999999999999999999875 888888532 12222111 0110 0 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 86 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv 159 (281)
T 3v2h_A 86 TKPS------EIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRII 159 (281)
T ss_dssp TCHH------HHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9976 6766665 68999999997532 3567788999999999999987321 2557899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..+.+.+..+. +|+++
T Consensus 160 ~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~v 201 (281)
T 3v2h_A 160 NIASAHGLVAS----------P----------------------------FKSAYVAAKHGIMGLTKTVALEVAESGVTV 201 (281)
T ss_dssp EECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCcccccCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 99998653221 0 015799999999988877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++....... ......+.. .................+..++|+|++++.++..... ...+++++
T Consensus 202 n~v~PG~v~t~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~--~itG~~i~ 273 (281)
T 3v2h_A 202 NSICPGYVLTPLVEKQIP---DQARTRGIT---EEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAA--QITGTHVS 273 (281)
T ss_dssp EEEEECSBCC----------------------------------CCTTCSCBCHHHHHHHHHHHHSSGGG--GCCSCEEE
T ss_pred EEEECCCCcCcchhhhcc---hhhhhcCCC---HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcC--CCCCcEEE
Confidence 999999998764321100 000000000 0000011122334446789999999999988865432 13688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 274 vdGG 277 (281)
T 3v2h_A 274 MDGG 277 (281)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9877
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=166.86 Aligned_cols=211 Identities=13% Similarity=0.147 Sum_probs=147.8
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
...+++|+|+||||||+||++++++|++.|.+..+|+++.|+..... .++++.. ...++.++.
T Consensus 16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~---~~~~l~~--------------~~~~~~~~~ 78 (267)
T 1sny_A 16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK---ELEDLAK--------------NHSNIHILE 78 (267)
T ss_dssp ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH---HHHHHHH--------------HCTTEEEEE
T ss_pred ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH---HHHHhhc--------------cCCceEEEE
Confidence 34467899999999999999999999999832235999999865432 2322211 124689999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---C
Q psy6053 177 GDAEADELAIKESDRQLLAS---------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---K 236 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~---------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~ 236 (614)
+|+++++ +++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... .
T Consensus 79 ~Dl~~~~------~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 152 (267)
T 1sny_A 79 IDLRNFD------AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKA 152 (267)
T ss_dssp CCTTCGG------GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ecCCChH------HHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhc
Confidence 9999976 6666665 6999999999754 13567778999999999999988653 0
Q ss_pred ------C-----CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHH
Q psy6053 237 ------H-----LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSE 305 (614)
Q Consensus 237 ------~-----~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE 305 (614)
+ ..++|++||..+...... . .....|+.||+..|
T Consensus 153 ~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------~----------------------------~~~~~Y~~sK~a~~ 197 (267)
T 1sny_A 153 AKANESQPMGVGRAAIINMSSILGSIQGNT-------D----------------------------GGMYAYRTSKSALN 197 (267)
T ss_dssp HHHTTTSCSSTTTCEEEEECCGGGCSTTCC-------S----------------------------CCCHHHHHHHHHHH
T ss_pred ccccccccccCCCceEEEEecccccccCCC-------C----------------------------CCchHHHHHHHHHH
Confidence 1 468999999866432110 0 00147999999999
Q ss_pred HHHHHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHH
Q psy6053 306 GLVVEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFV 381 (614)
Q Consensus 306 ~lv~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~ 381 (614)
.+++..+. .|++++++|||.|..+... . ...+..+++|+.++.
T Consensus 198 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~----------------------~~~~~~~~~a~~~~~ 244 (267)
T 1sny_A 198 AATKSLSVDLYPQRIMCVSLHPGWVKTDMGG-----------S----------------------SAPLDVPTSTGQIVQ 244 (267)
T ss_dssp HHHHHHHHHHGGGTCEEEEECCCSBCSTTTC-----------T----------------------TCSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEeCCcceecCCCC-----------C----------------------CCCCCHHHHHHHHHH
Confidence 99887654 4899999999988543210 0 124678999999999
Q ss_pred HHHhhhhcCCCCccEEEec
Q psy6053 382 AIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 382 ~~~~~~~~~~~~~~vyni~ 400 (614)
++..... ...+..+++.
T Consensus 245 ~~~~~~~--~~~G~~~~~~ 261 (267)
T 1sny_A 245 TISKLGE--KQNGGFVNYD 261 (267)
T ss_dssp HHHHCCG--GGTTCEECTT
T ss_pred HHHhcCc--CCCCcEEccC
Confidence 8876432 1245555543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=168.38 Aligned_cols=221 Identities=14% Similarity=0.130 Sum_probs=152.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||||+||++++++|++.|++ |+++.|+.. ++++..+ .+. .. ...++.++.+|+++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~---~~-~~~~~~~~~~D~~~ 63 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDR---VAALDLSAE------TLEETAR-----THW---HA-YADKVLRVRADVAD 63 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHS---TT-TGGGEEEEECCTTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHH---Hh-cCCcEEEEEecCCC
Confidence 689999999999999999999999865 888888642 2222111 010 01 23468999999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh----------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF----------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+.+++
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~i 137 (250)
T 2cfc_A 64 EG------DVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVI 137 (250)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEE
Confidence 65 6766665 78999999986431 2456778999999998776665431 256899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+++.... .|++
T Consensus 138 v~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~ 179 (250)
T 2cfc_A 138 VNIASVASLVAFP--------------------------------------GRSAYTTSKGAVLQLTKSVAVDYAGSGIR 179 (250)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECChhhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986543210 015799999999999887654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++++|||.|+++.... .. .. ..+...+..+. ....+...+|+|++++.++..... ...++++
T Consensus 180 v~~v~Pg~v~t~~~~~---~~---~~-~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 241 (250)
T 2cfc_A 180 CNAVCPGMIETPMTQW---RL---DQ-PELRDQVLARI---------PQKEIGTAAQVADAVMFLAGEDAT--YVNGAAL 241 (250)
T ss_dssp EEEEEECSBCSTTTHH---HH---TS-HHHHHHHHTTC---------TTCSCBCHHHHHHHHHHHHSTTCT--TCCSCEE
T ss_pred EEEEEeCcCccCcccc---cc---CC-HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhh--cccCCEE
Confidence 9999999998874311 00 00 11222222211 112467899999999988865321 1257899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 242 ~v~gG 246 (250)
T 2cfc_A 242 VMDGA 246 (250)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 98776
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=168.87 Aligned_cols=220 Identities=14% Similarity=0.094 Sum_probs=151.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.. ++++..+ +.. ...++.++.+|+
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~---V~~~~r~~~------~~~~~~~---------~~~--~~~~~~~~~~D~ 63 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAK---VMITGRHSD------VGEKAAK---------SVG--TPDQIQFFQHDS 63 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH---------HHC--CTTTEEEEECCT
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH---------Hhh--ccCceEEEECCC
Confidence 56899999999999999999999999876 888888632 2222111 001 114789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCC-ceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHL-ELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k~~ 241 (614)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++.+.+... .+. +++
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~i 137 (251)
T 1zk4_A 64 SDED------GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASI 137 (251)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEE
Confidence 9865 6666665 48999999996431 3556788999999888776665431 244 789
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh------hCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM------NNG 315 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~------~~g 315 (614)
|++||..+..... ....|+.||+..|.+++... ..|
T Consensus 138 v~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~ 179 (251)
T 1zk4_A 138 INMSSIEGFVGDP--------------------------------------SLGAYNASKGAVRIMSKSAALDCALKDYD 179 (251)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEeCCchhccCCC--------------------------------------CCccchHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999986543210 01579999999998887654 348
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++++++|||.|.++..... .. ........ .......+++++|+|++++.++..... ...++
T Consensus 180 i~v~~v~Pg~v~t~~~~~~-------~~--~~~~~~~~--------~~~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~ 240 (251)
T 1zk4_A 180 VRVNTVHPGYIKTPLVDDL-------PG--AEEAMSQR--------TKTPMGHIGEPNDIAYICVYLASNESK--FATGS 240 (251)
T ss_dssp EEEEEEEECCBCCHHHHTS-------TT--HHHHHTST--------TTCTTSSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred eEEEEEeeCcCcchhhhhc-------Cc--hhhhHHHh--------hcCCCCCCcCHHHHHHHHHHHcCcccc--cccCc
Confidence 9999999999987643211 11 11111011 111123478999999999998865431 12578
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 241 ~~~v~gG 247 (251)
T 1zk4_A 241 EFVVDGG 247 (251)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999877
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=168.51 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=152.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|..... +.+.+.++ . ...++.++.+|+
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~~---V~~~~r~~~~~---~~~~~~~~--------~-----~~~~~~~~~~Dl 92 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGAD---VAIWYNSHPAD---EKAEHLQK--------T-----YGVHSKAYKCNI 92 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTCE---EEEEESSSCCH---HHHHHHHH--------H-----HCSCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCHHHH---HHHHHHHH--------h-----cCCcceEEEeec
Confidence 57899999999999999999999999876 88899976432 22222111 0 224688999999
Q ss_pred CCCCCCCCHHHHHHHhcc-------ccEEEEcccccCh---------hHHHHHHHHHhHHH----HHHHHHHHHHcCCCc
Q psy6053 180 EADELAIKESDRQLLASE-------VDIMIHGAATIRF---------DEALKKAVLLNTRG----TKMMLSLAKEMKHLE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~-------vd~ViH~AA~v~~---------~~~~~~~~~~Nv~g----t~~ll~la~~~~~~k 239 (614)
++++ +++.++++ +|+|||+||.... .+.++..+++|+.| ++++++.+++. +.+
T Consensus 93 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~ 165 (279)
T 3ctm_A 93 SDPK------SVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN-GKG 165 (279)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCC
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCC
Confidence 9865 66666653 8999999996533 24456789999999 56777777763 678
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+..... .+ ....|+.||+..|.+++.... .+
T Consensus 166 ~iv~isS~~~~~~~~--------~~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~ 209 (279)
T 3ctm_A 166 SLIITSSISGKIVNI--------PQ----------------------------LQAPYNTAKAACTHLAKSLAIEWAPFA 209 (279)
T ss_dssp EEEEECCCTTSCC-----------C----------------------------CHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred eEEEECchHhccCCC--------CC----------------------------CcccHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999986532200 00 015799999999999987765 46
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++.+++||.|.++... . .. ........... ....+++++|+|++++.++..... ...++
T Consensus 210 -~v~~v~Pg~v~t~~~~-------~-~~-~~~~~~~~~~~---------p~~~~~~~~dvA~~~~~l~s~~~~--~~tG~ 268 (279)
T 3ctm_A 210 -RVNTISPGYIDTDITD-------F-AS-KDMKAKWWQLT---------PLGREGLTQELVGGYLYLASNAST--FTTGS 268 (279)
T ss_dssp -EEEEEEECSBSSTTTS-------S-CC-HHHHHHHHHHS---------TTCSCBCGGGTHHHHHHHHSGGGT--TCCSC
T ss_pred -CEEEEeccCCcccccc-------c-cC-hHHHHHHHHhC---------CccCCcCHHHHHHHHHHHhCcccc--CccCC
Confidence 9999999998665321 1 11 11111111100 112378899999999998865432 13678
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 269 ~i~vdgG 275 (279)
T 3ctm_A 269 DVVIDGG 275 (279)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999877
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=168.74 Aligned_cols=220 Identities=11% Similarity=0.065 Sum_probs=151.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc-cCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR-QKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR-~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+|+||||+|+||++++++|++.|++ |+++.| +. ++++++.+ .+... ...++.++.+|
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~~-----~~~~~----~~~~~~~~~~D 70 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFR---VVVHYRHSE------GAAQRLVA-----ELNAA----RAGSAVLCKGD 70 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCH------HHHHHHHH-----HHHHH----STTCEEEEECC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCCh------HHHHHHHH-----HHHHh----cCCceEEEecc
Confidence 56899999999999999999999999875 888888 42 22222211 11110 12468899999
Q ss_pred CCCC----CCCCCHHHHHHHhc-------cccEEEEcccccCh-------h-----------HHHHHHHHHhHHHHHHHH
Q psy6053 179 AEAD----ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------D-----------EALKKAVLLNTRGTKMML 229 (614)
Q Consensus 179 l~~~----~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~-----------~~~~~~~~~Nv~gt~~ll 229 (614)
++++ + +++.+++ ++|++||+||.... . +.++..+++|+.|+.+++
T Consensus 71 l~~~~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 144 (276)
T 1mxh_A 71 LSLSSSLLD------CCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLI 144 (276)
T ss_dssp CSSSTTHHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCccccHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHH
Confidence 9997 5 5665554 68999999996432 1 567788999999999999
Q ss_pred HHHHHc--CCC------ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhH
Q psy6053 230 SLAKEM--KHL------ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTK 301 (614)
Q Consensus 230 ~la~~~--~~~------k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK 301 (614)
+++... .+. .++|++||..+.... | ....|+.||
T Consensus 145 ~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asK 186 (276)
T 1mxh_A 145 RAFARRQGEGGAWRSRNLSVVNLCDAMTDLPL----------P----------------------------GFCVYTMAK 186 (276)
T ss_dssp HHHHHTC-------CCCEEEEEECCGGGGSCC----------T----------------------------TCHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCcEEEEECchhhcCCC----------C----------------------------CCeehHHHH
Confidence 999873 123 689999998764321 0 014799999
Q ss_pred HHHHHHHHHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHH
Q psy6053 302 CLSEGLVVEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITIN 377 (614)
Q Consensus 302 ~~aE~lv~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~ 377 (614)
+..+.+.+..+. .|+++++++||.|.++ . . ..+ .......... ....++..++|+|+
T Consensus 187 ~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~----~-----~~~-~~~~~~~~~~--------p~~r~~~~~~dva~ 247 (276)
T 1mxh_A 187 HALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P----A-----MPQ-ETQEEYRRKV--------PLGQSEASAAQIAD 247 (276)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S----S-----SCH-HHHHHHHTTC--------TTTSCCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c----c-----CCH-HHHHHHHhcC--------CCCCCCCCHHHHHH
Confidence 999998877654 4899999999999876 2 1 111 1222222211 01123788999999
Q ss_pred HHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 378 GIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 378 aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
+++.++..... ...+.++++.++
T Consensus 248 ~v~~l~s~~~~--~~tG~~~~vdgG 270 (276)
T 1mxh_A 248 AIAFLVSKDAG--YITGTTLKVDGG 270 (276)
T ss_dssp HHHHHHSGGGT--TCCSCEEEESTT
T ss_pred HHHHHhCcccc--CccCcEEEECCc
Confidence 99988865331 135789998876
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=167.11 Aligned_cols=234 Identities=14% Similarity=0.108 Sum_probs=157.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc-------CHHHHHHHHHhChhhHHhhhhccccccCe
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK-------NARQRIEELFASPLFNLLKSVHGQKIIDK 171 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~-------~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~ 171 (614)
.+++|+++||||+|+||++++++|++.|.+ |+++.|..... ...+++++..+ .+. . ...+
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~~~~ 78 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGAD---IIACDICAPVSASVTYAPASPEDLDETAR-----LVE----D-QGRK 78 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEECCSCCCTTCCSCCCCHHHHHHHHH-----HHH----T-TTCC
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeccccccccccccccCHHHHHHHHH-----HHH----h-cCCe
Confidence 467899999999999999999999999876 88888843210 01233333211 111 1 3357
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc--
Q psy6053 172 VLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-- 235 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-- 235 (614)
+.++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+...
T Consensus 79 ~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~ 152 (280)
T 3pgx_A 79 ALTRVLDVRDDA------ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMI 152 (280)
T ss_dssp EEEEECCTTCHH------HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 899999999876 6666654 68999999997542 3567788999999999999887441
Q ss_pred --CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh
Q psy6053 236 --KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN 313 (614)
Q Consensus 236 --~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~ 313 (614)
+.-.++|++||..+..... ....|+.||+..+.+.+..+.
T Consensus 153 ~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~ 194 (280)
T 3pgx_A 153 EAGNGGSIVVVSSSAGLKATP--------------------------------------GNGHYSASKHGLTALTNTLAI 194 (280)
T ss_dssp HHCSCEEEEEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEcchhhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHH
Confidence 2246899999986543210 015799999999988877654
Q ss_pred ----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcC--ceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 314 ----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKG--VIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 314 ----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g--~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+|+++..++||.|.++... ........... ....+.........+..++|+|++++.++....
T Consensus 195 e~~~~gi~vn~v~PG~v~t~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~ 263 (280)
T 3pgx_A 195 ELGEYGIRVNSIHPYSVETPMIE-----------PEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGS 263 (280)
T ss_dssp HHGGGTEEEEEEEECSBCSTTCC-----------HHHHHHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGG
T ss_pred HhhhcCeEEEEEeeCcccCcccc-----------hhhhhhhhhcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccc
Confidence 5899999999999776432 11111111000 000000011111248899999999998886543
Q ss_pred hcCCCCccEEEeccC
Q psy6053 388 SQKEHRQSIVHLTSS 402 (614)
Q Consensus 388 ~~~~~~~~vyni~~~ 402 (614)
. -..++++++.++
T Consensus 264 ~--~itG~~i~vdGG 276 (280)
T 3pgx_A 264 G--TLTGTQIPVDKG 276 (280)
T ss_dssp T--TCSSCEEEESTT
T ss_pred c--CCCCCEEEECCC
Confidence 2 136889999877
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=169.21 Aligned_cols=241 Identities=14% Similarity=0.108 Sum_probs=160.2
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc------CHHHHHHHHHhChhhHHhhhhccccccCe
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK------NARQRIEELFASPLFNLLKSVHGQKIIDK 171 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~------~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~ 171 (614)
..+++|+||||||+|+||++++++|++.|.+ |+++.|..... ...+++++..+ .+. . ...+
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~~~~ 75 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGAD---IIAVDLCDQIASVPYPLATPEELAATVK-----LVE----D-IGSR 75 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEECCSCCTTCSSCCCCHHHHHHHHH-----HHH----H-HTCC
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCe---EEEEecccccccccccccchHHHHHHHH-----HHH----h-cCCe
Confidence 3467899999999999999999999999876 88888873211 01233333211 111 1 2357
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh---hHHHHHHHHHhHHHHHHHHHHHHHc----CC
Q psy6053 172 VLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF---DEALKKAVLLNTRGTKMMLSLAKEM----KH 237 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~la~~~----~~ 237 (614)
+.++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... +.
T Consensus 76 ~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~ 149 (278)
T 3sx2_A 76 IVARQADVRDRE------SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGT 149 (278)
T ss_dssp EEEEECCTTCHH------HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS
T ss_pred EEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC
Confidence 999999999876 6776665 78999999997542 4667889999999999999987542 22
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+...... +. +. ...|+.||+..+.+.+..+.
T Consensus 150 ~g~iv~isS~~~~~~~~~--------~~-~~-------------------------~~~Y~asKaa~~~~~~~la~e~~~ 195 (278)
T 3sx2_A 150 GGSIVLISSSAGLAGVGS--------AD-PG-------------------------SVGYVAAKHGVVGLMRVYANLLAG 195 (278)
T ss_dssp CEEEEEECCGGGTSCCCC--------SS-HH-------------------------HHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CcEEEEEccHHhcCCCcc--------CC-CC-------------------------chHhHHHHHHHHHHHHHHHHHHhc
Confidence 468999999865432110 00 00 14799999999988877654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHh-cCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAG-KGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~-~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
+|+++..++||.|.++.... ......+.... ........++... ..+..++|+|++++.++..... -.
T Consensus 196 ~gi~vn~v~PG~v~T~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~--~i 264 (278)
T 3sx2_A 196 QMIRVNSIHPSGVETPMINN--------EFTREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQAR--YI 264 (278)
T ss_dssp GTEEEEEEEESCBSSTTTSS--------HHHHHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGT--TC
T ss_pred cCcEEEEEecCCccCccchh--------hhHHHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcccc--cc
Confidence 58999999999997764321 00111111111 1100001112222 5678999999999988865432 13
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.++++++.++
T Consensus 265 tG~~i~vdGG 274 (278)
T 3sx2_A 265 TGVTLPVDAG 274 (278)
T ss_dssp CSCEEEESTT
T ss_pred cCCEEeECCC
Confidence 6889999877
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=167.48 Aligned_cols=215 Identities=15% Similarity=0.143 Sum_probs=148.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|+..... +-.++ ...++.++.+|+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~~~~--~~~~~-----------------~~~~~~~~~~Dv 62 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGAT---VLGLDLKPPAGE--EPAAE-----------------LGAAVRFRNADV 62 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESSCC-------------------------------CEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCChHHHH--HHHHH-----------------hCCceEEEEccC
Confidence 56899999999999999999999999876 888898764321 10010 224678999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc------
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM------ 235 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~------ 235 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++...
T Consensus 63 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~ 136 (257)
T 3tpc_A 63 TNEA------DATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEP 136 (257)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCC
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 9865 6766665 78999999997531 3567788999999999999988763
Q ss_pred ---CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh
Q psy6053 236 ---KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM 312 (614)
Q Consensus 236 ---~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~ 312 (614)
++..++|++||..+..... ....|+.||+..+.+.+..+
T Consensus 137 ~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la 178 (257)
T 3tpc_A 137 DADGERGVIVNTASIAAFDGQI--------------------------------------GQAAYAASKGGVAALTLPAA 178 (257)
T ss_dssp CTTSCCEEEEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEechhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHH
Confidence 1345799999986543210 01579999998888876655
Q ss_pred h----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCcc-ccceeHHHHHHHHHHHHHhhh
Q psy6053 313 N----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGY-ADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 313 ~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~-~d~vpVDdva~aii~~~~~~~ 387 (614)
. +|+++..++||.|.++.....+. ........ .... ..+...+|+|++++.++....
T Consensus 179 ~e~~~~gi~vn~v~PG~v~t~~~~~~~~---------~~~~~~~~---------~~p~~~r~~~~~dva~~v~~l~s~~~ 240 (257)
T 3tpc_A 179 RELARFGIRVVTIAPGIFDTPMMAGMPQ---------DVQDALAA---------SVPFPPRLGRAEEYAALVKHICENTM 240 (257)
T ss_dssp HHHGGGTEEEEEEEECCBSCC-----------------------C---------CSSSSCSCBCHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCeEEEEEEeCCCCChhhccCCH---------HHHHHHHh---------cCCCCCCCCCHHHHHHHHHHHcccCC
Confidence 4 58999999999997654321110 01001111 1111 346789999999999886533
Q ss_pred hcCCCCccEEEeccC
Q psy6053 388 SQKEHRQSIVHLTSS 402 (614)
Q Consensus 388 ~~~~~~~~vyni~~~ 402 (614)
..++++++.++
T Consensus 241 ----itG~~i~vdGG 251 (257)
T 3tpc_A 241 ----LNGEVIRLDGA 251 (257)
T ss_dssp ----CCSCEEEESTT
T ss_pred ----cCCcEEEECCC
Confidence 37889999877
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=171.39 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=156.8
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||+||||||+|+||++++++|++.|.+ |+++.|.... ..+.+.+..+. ...++.++.+|
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~---V~~~~r~~~~--~~~~~~~~~~~-------------~~~~~~~~~~D 105 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGAN---IAIAYLDEEG--DANETKQYVEK-------------EGVKCVLLPGD 105 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHHHHT-------------TTCCEEEEESC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCchH--HHHHHHHHHHh-------------cCCcEEEEECC
Confidence 367899999999999999999999999876 8888887532 12222222111 33578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V 242 (614)
+++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+... .+..++|
T Consensus 106 v~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv 179 (291)
T 3ijr_A 106 LSDEQ------HCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVII 179 (291)
T ss_dssp TTSHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEE
Confidence 99866 6666654 6899999999642 13567789999999999999999863 2345899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..|.+.+..+. +|+++
T Consensus 180 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v 221 (291)
T 3ijr_A 180 NTASIVAYEGNE--------------------------------------TLIDYSATKGAIVAFTRSLSQSLVQKGIRV 221 (291)
T ss_dssp EECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEechHhcCCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHHhhcCEEE
Confidence 999986543211 015799999999988877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++.... . .. ........ .......+..++|+|++++.++..... -..+++++
T Consensus 222 n~v~PG~v~T~~~~~------~-~~-~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~L~s~~~~--~itG~~i~ 282 (291)
T 3ijr_A 222 NGVAPGPIWTPLIPS------S-FD-EKKVSQFG---------SNVPMQRPGQPYELAPAYVYLASSDSS--YVTGQMIH 282 (291)
T ss_dssp EEEEECSBCSTHHHH------H-SC-HHHHHHTT---------TTSTTSSCBCGGGTHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCCCcCCcccc------c-CC-HHHHHHHH---------ccCCCCCCcCHHHHHHHHHHHhCCccC--CCcCCEEE
Confidence 999999987653100 0 00 01111111 122233467899999999988865432 13688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 283 vdGG 286 (291)
T 3ijr_A 283 VNGG 286 (291)
T ss_dssp ESSS
T ss_pred ECCC
Confidence 9877
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=175.50 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=165.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC-------CCcCHHHHHHHHHhChhhHHhhhhccccccCe
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK-------KGKNARQRIEELFASPLFNLLKSVHGQKIIDK 171 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~-------~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~ 171 (614)
.+++|+||||||+|+||++++++|++.|.+ |+++.|.. +.....+.+.+.+ . . ...+
T Consensus 24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~---Vv~~~r~~~~~~~~~~~~~~~~~~~~~~--------~----~-~~~~ 87 (322)
T 3qlj_A 24 VVDGRVVIVTGAGGGIGRAHALAFAAEGAR---VVVNDIGVGLDGSPASGGSAAQSVVDEI--------T----A-AGGE 87 (322)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEECCCBCTTSSBTCTTSHHHHHHHHH--------H----H-TTCE
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCcccccccccccHHHHHHHHHHH--------H----h-cCCc
Confidence 367899999999999999999999999876 88888761 1122222222111 1 1 3357
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-C
Q psy6053 172 VLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-K 236 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~ 236 (614)
+.++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .
T Consensus 88 ~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~ 161 (322)
T 3qlj_A 88 AVADGSNVADWD------QAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWR 161 (322)
T ss_dssp EEEECCCTTSHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 899999999976 6666665 78999999997532 3567788999999999999987542 0
Q ss_pred C--------CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHH
Q psy6053 237 H--------LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLV 308 (614)
Q Consensus 237 ~--------~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv 308 (614)
. -.++|++||..+..... ....|+.||+..+.+.
T Consensus 162 ~~~~~~~~~~g~IV~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~ 203 (322)
T 3qlj_A 162 GLSKAGKAVDGRIINTSSGAGLQGSV--------------------------------------GQGNYSAAKAGIATLT 203 (322)
T ss_dssp HHHHTTCCCCEEEEEECCHHHHHCBT--------------------------------------TCHHHHHHHHHHHHHH
T ss_pred HccccCCCCCcEEEEEcCHHHccCCC--------------------------------------CCccHHHHHHHHHHHH
Confidence 0 14899999986532210 0157999999999888
Q ss_pred HHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHH
Q psy6053 309 VEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIW 384 (614)
Q Consensus 309 ~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~ 384 (614)
+..+. .|+++..++|| +..+.... +.... .........++.++|+|++++.++.
T Consensus 204 ~~la~e~~~~gI~vn~v~PG-~~t~~~~~---~~~~~------------------~~~~~~~~~~~~pedva~~v~~L~s 261 (322)
T 3qlj_A 204 LVGAAEMGRYGVTVNAIAPS-ARTRMTET---VFAEM------------------MATQDQDFDAMAPENVSPLVVWLGS 261 (322)
T ss_dssp HHHHHHHGGGTEEEEEEEEC-TTSCCSCC---SCCC--------------------------CCTTCGGGTHHHHHHHTS
T ss_pred HHHHHHhcccCcEEEEecCC-CCCccchh---hhhhh------------------hhccccccCCCCHHHHHHHHHHHhC
Confidence 76654 58999999999 53322111 00000 0011222345688999999998885
Q ss_pred hhhhcCCCCccEEEeccCCcc---------------cccHHHHHHHHhhhcccccCC
Q psy6053 385 AYLSQKEHRQSIVHLTSSQEW---------------QVSWQEIIDIGKSIVTTEVPL 426 (614)
Q Consensus 385 ~~~~~~~~~~~vyni~~~~~~---------------~it~~e~~~~~~~~~g~~~p~ 426 (614)
.... -..+.++++.++... .++..|+.+.+.+.+|.+.|.
T Consensus 262 ~~~~--~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~ 316 (322)
T 3qlj_A 262 AEAR--DVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLGKARPP 316 (322)
T ss_dssp GGGG--GCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHHHSCCC
T ss_pred cccc--CCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhhccCCC
Confidence 5432 136788888877211 236699999999988876553
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=168.91 Aligned_cols=226 Identities=16% Similarity=0.116 Sum_probs=151.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+|+||||||+||++++++|++.|.+ |+++.|+. +++++..+. ...++.++.+|+
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~Dl 71 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGAT---VIMAVRDT------RKGEAAART-------------MAGQVEVRELDL 71 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHTT-------------SSSEEEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH-------------hcCCeeEEEcCC
Confidence 57899999999999999999999999865 88999864 233332211 335799999999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccCh-----hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceecc
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIRF-----DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHL 251 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~ 251 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... ..+++|++||..+..
T Consensus 72 ~d~~------~v~~~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~riv~isS~~~~~ 144 (291)
T 3rd5_A 72 QDLS------SVRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPR-LTDRVVTVSSMAHWP 144 (291)
T ss_dssp TCHH------HHHHHHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGG-EEEEEEEECCGGGTT
T ss_pred CCHH------HHHHHHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheeEeechhhcc
Confidence 9876 7888877 57999999997532 2456678999999999999999884 567999999987654
Q ss_pred CCcccccccCC-CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC--CCEEEeecc
Q psy6053 252 QEKVLYEKPYP-PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG--MPCLMLRPS 324 (614)
Q Consensus 252 ~~~~i~E~~~~-~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g--lp~~IvRp~ 324 (614)
.....++.... .+..+ ...|+.||+..+.+.+..+. .| +.+..++||
T Consensus 145 ~~~~~~~~~~~~~~~~~--------------------------~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG 198 (291)
T 3rd5_A 145 GRINLEDLNWRSRRYSP--------------------------WLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPG 198 (291)
T ss_dssp CCCCSSCTTCSSSCCCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCS
T ss_pred CCCCcccccccccCCCC--------------------------cchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCC
Confidence 32211110000 01110 14799999999988877654 45 999999999
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.|..+.....+ ......... .....-..+.+++|++++.++..+. ..++.+++.++
T Consensus 199 ~v~T~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~~A~~~~~l~~~~~----~~G~~~~vdgG 254 (291)
T 3rd5_A 199 YSHTNLQGASG---------RKLGDALMS---------AATRVVATDADFGARQTLYAASQDL----PGDSFVGPRFG 254 (291)
T ss_dssp GGGSCC--------------------------------------CHHHHHHHHHHHHHHHSCC----CTTCEEEETTS
T ss_pred CCccccccccc---------hHHHHHHHH---------HHHHHHhCCHHHHHHHHHHHHcCCC----CCCceeCCccc
Confidence 98554322110 000000000 0111223468999999999988743 36777777543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=164.25 Aligned_cols=216 Identities=17% Similarity=0.104 Sum_probs=149.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|.. +++++..+. ...++.++.+|+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~D~ 60 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGAR---VVLADVLD------EEGAATARE-------------LGDAARYQHLDV 60 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHT-------------TGGGEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHHH-------------hCCceeEEEecC
Confidence 56899999999999999999999999876 88888863 233332211 123688899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHH----HHHHHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMML----SLAKEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll----~la~~~~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+. ..+++ .+..++
T Consensus 61 ~~~~------~~~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~i 133 (254)
T 1hdc_A 61 TIEE------DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKD-AGGGSI 133 (254)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCCEE
Confidence 9865 6766665 79999999996532 3567788999999998554 44444 256899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+..+. .|++
T Consensus 134 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 175 (254)
T 1hdc_A 134 VNISSAAGLMGLA--------------------------------------LTSSYGASKWGVRGLSKLAAVELGTDRIR 175 (254)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECchhhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999987643210 015799999999988877654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccce-eHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFL-PVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~v-pVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++++|||.|.++.... ........+ ........+. +.+|+|++++.++..... ...+++
T Consensus 176 v~~v~Pg~v~t~~~~~-----------------~~~~~~~~~-~~~~p~~~~~~~~~dvA~~v~~l~s~~~~--~~tG~~ 235 (254)
T 1hdc_A 176 VNSVHPGMTYTPMTAE-----------------TGIRQGEGN-YPNTPMGRVGNEPGEIAGAVVKLLSDTSS--YVTGAE 235 (254)
T ss_dssp EEEEEECSBCCHHHHH-----------------HTCCCSTTS-CTTSTTSSCB-CHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEecccCcCccccc-----------------cchhHHHHH-HhcCCCCCCCCCHHHHHHHHHHHhCchhc--CCCCCE
Confidence 9999999987653110 000000000 0000112356 899999999988865431 136788
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 236 ~~vdgG 241 (254)
T 1hdc_A 236 LAVDGG 241 (254)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 988877
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=171.10 Aligned_cols=226 Identities=13% Similarity=0.039 Sum_probs=146.0
Q ss_pred CCcEEEEecccccccHHHHHHHHh-hCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILR-KSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~-~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++|+|+||||||+||++++++|++ .|++ |+++.|... ++++..+ .+.. ...++.++.+|+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~---V~~~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~Dl 63 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGD---VVLTARDVT------RGQAAVQ-----QLQA-----EGLSPRFHQLDI 63 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSE---EEEEESSHH------HHHHHHH-----HHHH-----TTCCCEEEECCT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCe---EEEEeCChH------HHHHHHH-----HHHh-----cCCeeEEEECCC
Confidence 578999999999999999999999 8865 888998632 2221111 1111 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 64 DDLQ------SIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp TCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 9865 6666665 79999999996531 4667788999999999999999873 112489999
Q ss_pred eCceeccCC----cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCC-CchhhhHHHHHHHHHHHhh------
Q psy6053 245 STAYCHLQE----KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFP-NSYAYTKCLSEGLVVEAMN------ 313 (614)
Q Consensus 245 ST~~~~~~~----~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~p-n~Y~~SK~~aE~lv~~~~~------ 313 (614)
||..+.... ....+.....+.+.+++........++......+. ..+| +.|+.||+..|.+++..+.
T Consensus 138 sS~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~ 215 (276)
T 1wma_A 138 SSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQK--EGWPSSAYGVTKIGVTVLSRIHARKLSEQR 215 (276)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTT--TTCCSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CChhhhcccccCChhHHhhccccccchhhhhhhhhhhhhhhccccccc--CCCccchhHHHHHHHHHHHHHHHHHhhccc
Confidence 998654210 00011111112222222222111111111110110 1122 6899999999888876543
Q ss_pred --CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 314 --NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 314 --~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
.|+++++++||.|.++... + ..+...+++|++++.++..+
T Consensus 216 ~~~~i~v~~v~PG~v~t~~~~---------------------~------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 216 KGDKILLNACCPGWVRTDMAG---------------------P------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp TTSCCEEEEEECCSBCSTTTC---------------------T------------TCSBCHHHHTHHHHHHHSCC
T ss_pred CCCceEEEEecCCccccCcCC---------------------c------------cccCChhHhhhhHhhhhcCc
Confidence 3899999999988554210 0 13578999999999988644
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-18 Score=167.67 Aligned_cols=208 Identities=11% Similarity=0.140 Sum_probs=140.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|+||||+|+||++++++|++.|.. .+|+++.|+.... +.+.+. ...++.++.+|++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~-~~V~~~~r~~~~~---~~l~~~----------------~~~~~~~~~~D~~ 61 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNI-RHIIATARDVEKA---TELKSI----------------KDSRVHVLPLTVT 61 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTC-CEEEEEESSGGGC---HHHHTC----------------CCTTEEEEECCTT
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCC-cEEEEEecCHHHH---HHHHhc----------------cCCceEEEEeecC
Confidence 5789999999999999999999999821 2489999975332 112110 1247899999999
Q ss_pred CCCCCCCHHHHHHHhc---------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---C----
Q psy6053 181 ADELAIKESDRQLLAS---------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---K---- 236 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~---------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~---- 236 (614)
+++ +++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... .
T Consensus 62 ~~~------~~~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~ 135 (250)
T 1yo6_A 62 CDK------SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKE 135 (250)
T ss_dssp CHH------HHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSS
T ss_pred CHH------HHHHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhccccc
Confidence 865 6666665 7999999999754 13557788999999999999887652 1
Q ss_pred --C-----CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHH
Q psy6053 237 --H-----LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVV 309 (614)
Q Consensus 237 --~-----~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~ 309 (614)
+ ..++|++||..+...... +..++.+ ...|+.||+..|.+++
T Consensus 136 ~~~~~~~~~~~iv~isS~~~~~~~~~--~~~~~~~-----------------------------~~~Y~~sK~a~~~~~~ 184 (250)
T 1yo6_A 136 SGDQLSVSRAAVITISSGLGSITDNT--SGSAQFP-----------------------------VLAYRMSKAAINMFGR 184 (250)
T ss_dssp CSSCCCTTTCEEEEECCGGGCSTTCC--STTSSSC-----------------------------BHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCcEEEEeccCccccCCcc--cccccCC-----------------------------ccHHHHHHHHHHHHHH
Confidence 2 578999999865432210 1001011 1579999999999988
Q ss_pred HHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 310 EAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 310 ~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
..+. .|+++.++|||.|.++... + ..+++.+++|++++.++..
T Consensus 185 ~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------------~------------~~~~~~~~~a~~~~~~~~~ 231 (250)
T 1yo6_A 185 TLAVDLKDDNVLVVNFCPGWVQTNLGG---------------------K------------NAALTVEQSTAELISSFNK 231 (250)
T ss_dssp HHHHHTGGGTCEEEEEECCCC----------------------------------------------HHHHHHHHHHHTT
T ss_pred HHHHHhccCCeEEEEEcCCceecCCCC---------------------C------------CCCCCHHHHHHHHHHHHhc
Confidence 7665 4899999999988554210 0 1357889999999998865
Q ss_pred hhhcCCCCccEEEec
Q psy6053 386 YLSQKEHRQSIVHLT 400 (614)
Q Consensus 386 ~~~~~~~~~~vyni~ 400 (614)
... ...+..+.+.
T Consensus 232 ~~~--~~~G~~~~~~ 244 (250)
T 1yo6_A 232 LDN--SHNGRFFMRN 244 (250)
T ss_dssp CCG--GGTTCEEETT
T ss_pred ccc--cCCCeEEEEC
Confidence 432 1134555543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=171.63 Aligned_cols=226 Identities=14% Similarity=0.100 Sum_probs=154.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|... ++++..+ .++. ...++.++.+|+
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~D~ 72 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAH---VVVSSRKQE------NVDRTVA-----TLQG-----EGLSVTGTVCHV 72 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHh-----cCCceEEEEccC
Confidence 57899999999999999999999999875 888888642 2222111 1111 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+..++
T Consensus 73 ~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~i 146 (260)
T 2zat_A 73 GKAE------DRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSV 146 (260)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEE
Confidence 9865 6666654 7999999999642 1 3457788999999999988887531 356899
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+..+. .|++
T Consensus 147 v~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 188 (260)
T 2zat_A 147 LIVSSVGAYHPFP--------------------------------------NLGPYNVSKTALLGLTKNLAVELAPRNIR 188 (260)
T ss_dssp EEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEechhhcCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999987643210 015799999999998887654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+++++||.|.++.... .|. .. ........+ .....+.+++|+|++++.++..... -..++++
T Consensus 189 v~~v~Pg~v~t~~~~~--~~~----~~-~~~~~~~~~---------~~~~~~~~~~dva~~v~~l~s~~~~--~~tG~~~ 250 (260)
T 2zat_A 189 VNCLAPGLIKTNFSQV--LWM----DK-ARKEYMKES---------LRIRRLGNPEDCAGIVSFLCSEDAS--YITGETV 250 (260)
T ss_dssp EEEEEECSBCSSTTHH--HHS----SH-HHHHHHHHH---------HTCSSCBCGGGGHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEEEECcccCccchh--ccc----Ch-HHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccC--CccCCEE
Confidence 9999999886653210 010 00 000001110 0112478899999999888765431 1257899
Q ss_pred EeccCCccccc
Q psy6053 398 HLTSSQEWQVS 408 (614)
Q Consensus 398 ni~~~~~~~it 408 (614)
++.++ .+.+
T Consensus 251 ~vdgG--~~~s 259 (260)
T 2zat_A 251 VVGGG--TASR 259 (260)
T ss_dssp EESTT--CCCC
T ss_pred EECCC--cccc
Confidence 99988 5443
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-18 Score=168.39 Aligned_cols=220 Identities=12% Similarity=0.054 Sum_probs=153.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|+... .+.+.+. ++. ...++.++.+|+
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~---v~~~~r~~~~---~~~~~~~--------~~~-----~~~~~~~~~~D~ 63 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGAT---VVGTATSQAS---AEKFENS--------MKE-----KGFKARGLVLNI 63 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESSHHH---HHHHHHH--------HHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHH--------HHh-----cCCceEEEEecC
Confidence 46899999999999999999999999876 8888886421 1222211 111 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 137 (247)
T 3lyl_A 64 SDIE------SIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRII 137 (247)
T ss_dssp TCHH------HHHHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9876 6666654 47999999997532 3567788999999999999887542 2446899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 138 ~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 179 (247)
T 3lyl_A 138 SIGSVVGSAGNP--------------------------------------GQTNYCAAKAGVIGFSKSLAYEVASRNITV 179 (247)
T ss_dssp EECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhccCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHHHHHcCeEE
Confidence 999986532210 015799999977777766544 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++..... .+ ........ ......+.+++|+|++++.++..... ...+++++
T Consensus 180 ~~v~PG~v~t~~~~~~--------~~-~~~~~~~~---------~~~~~~~~~~~dva~~i~~l~s~~~~--~~tG~~i~ 239 (247)
T 3lyl_A 180 NVVAPGFIATDMTDKL--------TD-EQKSFIAT---------KIPSGQIGEPKDIAAAVAFLASEEAK--YITGQTLH 239 (247)
T ss_dssp EEEEECSBCCTTTTTS--------CH-HHHHHHHT---------TSTTCCCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCcEecccchhc--------cH-HHHHHHhh---------cCCCCCCcCHHHHHHHHHHHhCCCcC--CccCCEEE
Confidence 9999999876543221 11 11111111 22234578999999999988865432 13688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 240 vdgG 243 (247)
T 3lyl_A 240 VNGG 243 (247)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9877
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=166.42 Aligned_cols=221 Identities=15% Similarity=0.125 Sum_probs=155.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|.+ |+++.|+.. ++++..+ .++.. ...++.++.+|+
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~~~Dv 69 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGAN---VAVAGRSTA------DIDACVA-----DLDQL----GSGKVIGVQTDV 69 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHTT----SSSCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHhh----CCCcEEEEEcCC
Confidence 57899999999999999999999999875 888888642 2222111 11110 225789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+... .+..++|
T Consensus 70 ~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv 143 (262)
T 3pk0_A 70 SDRA------QCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVV 143 (262)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9976 6666655 7899999999653 13567788999999999998887663 2557999
Q ss_pred EEeCceec-cCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 243 HISTAYCH-LQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 243 ~vST~~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
++||..+. ... | ....|+.||+..|.+.+..+. +|++
T Consensus 144 ~isS~~~~~~~~----------~----------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~ 185 (262)
T 3pk0_A 144 LTSSITGPITGY----------P----------------------------GWSHYGATKAAQLGFMRTAAIELAPHKIT 185 (262)
T ss_dssp EECCSBTTTBCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEechhhccCCC----------C----------------------------CChhhHHHHHHHHHHHHHHHHHHHhhCcE
Confidence 99998652 110 0 015799999999998887655 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|.++.... .. ........... ....+...+|+|++++.++..... -..++++
T Consensus 186 vn~v~PG~v~t~~~~~--------~~-~~~~~~~~~~~---------p~~r~~~p~dva~~v~~L~s~~~~--~itG~~i 245 (262)
T 3pk0_A 186 VNAIMPGNIMTEGLLE--------NG-EEYIASMARSI---------PAGALGTPEDIGHLAAFLATKEAG--YITGQAI 245 (262)
T ss_dssp EEEEEECSBCCHHHHT--------TC-HHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeCcCcCccccc--------cC-HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--CCcCCEE
Confidence 9999999997763211 11 12222222221 112356789999999988865432 2368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 246 ~vdGG 250 (262)
T 3pk0_A 246 AVDGG 250 (262)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=168.80 Aligned_cols=221 Identities=15% Similarity=0.145 Sum_probs=152.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|+||||+|+||++++++|++.|.+ |+++.|.... ..+.+.+... . ...++.++.+|++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~---v~~~~~~~~~--~~~~~~~~~~------------~-~~~~~~~~~~Dl~ 67 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGYS---VTVTYHSDTT--AMETMKETYK------------D-VEERLQFVQADVT 67 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHHTG------------G-GGGGEEEEECCTT
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCCE---EEEEcCCChH--HHHHHHHHHH------------h-cCCceEEEEecCC
Confidence 4689999999999999999999999876 7787776422 2222332211 1 3357999999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccc--c---C----hhHHHHHHHHHhHHHHHHHHHHH----HHcCCCce
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAAT--I---R----FDEALKKAVLLNTRGTKMMLSLA----KEMKHLEL 240 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~--v---~----~~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~ 240 (614)
+++ +++.+++ ++|+|||+||. . . -.+.++..+++|+.|+.++++.+ ++ .+..+
T Consensus 68 ~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~g~ 140 (264)
T 3i4f_A 68 KKE------DLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRK-QNFGR 140 (264)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHh-cCCCe
Confidence 976 6666665 78999999993 1 1 13557788999999999999988 44 35678
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... .+ ....|+.||+..+.+++..+. .|+
T Consensus 141 iv~iss~~~~~~~~--------~~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi 184 (264)
T 3i4f_A 141 IINYGFQGADSAPG--------WI----------------------------YRSAFAAAKVGLVSLTKTVAYEEAEYGI 184 (264)
T ss_dssp EEEECCTTGGGCCC--------CT----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEeechhcccCC--------CC----------------------------CCchhHHHHHHHHHHHHHHHHHhhhcCc
Confidence 99999884421110 00 015799999999988876654 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++.+++||.|.++..... ......... .......+...+|+|++++.++..... -..+++
T Consensus 185 ~v~~v~PG~v~t~~~~~~---------~~~~~~~~~---------~~~p~~r~~~~~dva~~v~~l~s~~~~--~itG~~ 244 (264)
T 3i4f_A 185 TANMVCPGDIIGEMKEAT---------IQEARQLKE---------HNTPIGRSGTGEDIARTISFLCEDDSD--MITGTI 244 (264)
T ss_dssp EEEEEEECCCCGGGGSCC---------HHHHHHC-----------------CCCCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEccCCccCccchhc---------cHHHHHHHh---------hcCCCCCCcCHHHHHHHHHHHcCcccC--CCCCcE
Confidence 999999999988754321 111111000 111123467899999999998865432 136889
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.+|
T Consensus 245 i~vdGG 250 (264)
T 3i4f_A 245 IEVTGA 250 (264)
T ss_dssp EEESCS
T ss_pred EEEcCc
Confidence 999887
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=169.60 Aligned_cols=221 Identities=13% Similarity=0.129 Sum_probs=153.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|... ..+..+++. + ...++.++.+|+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~~---~~~~~~~~~-------------~-~~~~~~~~~~Dv 88 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAGAH---VLAWGRTDG---VKEVADEIA-------------D-GGGSAEAVVADL 88 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSTH---HHHHHHHHH-------------T-TTCEEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEcCHHH---HHHHHHHHH-------------h-cCCcEEEEEecC
Confidence 57899999999999999999999999876 777777532 122122221 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +.+.+.+ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 89 ~d~~------~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~ 162 (273)
T 3uf0_A 89 ADLE------GAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVT 162 (273)
T ss_dssp TCHH------HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 9876 5555443 78999999997542 3567788999999999999877431 25578999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+..+.+.+..+. +|+++.
T Consensus 163 isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 204 (273)
T 3uf0_A 163 IASMLSFQGGR--------------------------------------NVAAYAASKHAVVGLTRALASEWAGRGVGVN 204 (273)
T ss_dssp ECCGGGTSCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcchHhcCCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 99986642210 015799999999988877654 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.|.++..... ............+. ....+..++|+|++++.++..... -..++++++
T Consensus 205 ~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------p~~r~~~pedva~~v~~L~s~~a~--~itG~~i~v 266 (273)
T 3uf0_A 205 ALAPGYVVTANTAAL-------RADDERAAEITARI---------PAGRWATPEDMVGPAVFLASDAAS--YVHGQVLAV 266 (273)
T ss_dssp EEEECSBCSGGGHHH-------HTSHHHHHHHHHHS---------TTSSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EEEeCCCcCCchhhc-------ccCHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCchhc--CCcCCEEEE
Confidence 999999977642110 00011111111111 112467889999999998865432 236889999
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.+|
T Consensus 267 dGG 269 (273)
T 3uf0_A 267 DGG 269 (273)
T ss_dssp STT
T ss_pred CcC
Confidence 887
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=168.11 Aligned_cols=221 Identities=15% Similarity=0.117 Sum_probs=153.2
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+|+||||+ |+||++++++|++.|++ |+++.|..+ ..+.++++.. +. .+..++.+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~---V~~~~r~~~---~~~~~~~l~~---------~~-----~~~~~~~~ 66 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAE---LAFTYQNDK---LKGRVEEFAA---------QL-----GSDIVLQC 66 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE---EEEEESSTT---THHHHHHHHH---------HT-----TCCCEEEC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE---EEEEcCcHH---HHHHHHHHHH---------hc-----CCcEEEEc
Confidence 568999999999 99999999999999876 888899762 2233333211 11 22368899
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------------hHHHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF------------DEALKKAVLLNTRGTKMMLSLAKEM-KH 237 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~-~~ 237 (614)
|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+
T Consensus 67 D~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~ 140 (265)
T 1qsg_A 67 DVAEDA------SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP 140 (265)
T ss_dssp CTTCHH------HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 999865 6666665 68999999996531 2456778999999999999999763 11
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+.... | ....|+.||+..|.+.+..+.
T Consensus 141 ~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~ 182 (265)
T 1qsg_A 141 GSALLTLSYLGAERAI----------P----------------------------NYNVMGLAKASLEANVRYMANAMGP 182 (265)
T ss_dssp EEEEEEEECGGGTSBC----------T----------------------------TTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcchhhccCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhhh
Confidence 2489999998653211 0 015799999999999887654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
.|+++.+++||.|.++.... .............+. ....+.+++|+|++++.++..... ...
T Consensus 183 ~gi~v~~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~~---------p~~~~~~~~dva~~v~~l~s~~~~--~~t 244 (265)
T 1qsg_A 183 EGVRVNAISAGPIRTLAASG-------IKDFRKMLAHCEAVT---------PIRRTVTIEDVGNSAAFLCSDLSA--GIS 244 (265)
T ss_dssp TTEEEEEEEECCCCCTTGGG-------STTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHTSGGGT--TCC
T ss_pred cCeEEEEEEeCCCccchhhc-------ccccHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCchhc--Ccc
Confidence 48999999999998764321 111112222221111 011357899999999988864331 135
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.++
T Consensus 245 G~~~~vdgG 253 (265)
T 1qsg_A 245 GEVVHVDGG 253 (265)
T ss_dssp SCEEEESTT
T ss_pred CCEEEECCC
Confidence 789999887
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=163.96 Aligned_cols=218 Identities=13% Similarity=0.116 Sum_probs=144.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|..... . .++.++.+|+
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~---V~~~~r~~~~~-------------------------~-~~~~~~~~D~ 55 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAK---VTGFDQAFTQE-------------------------Q-YPFATEVMDV 55 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCCCSS-------------------------C-CSSEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCchhhh-------------------------c-CCceEEEcCC
Confidence 46899999999999999999999999876 88899875321 1 1277889999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHH----HcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAK----EMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++. + .+..++
T Consensus 56 ~d~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-~~~g~i 128 (250)
T 2fwm_X 56 ADAA------QVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRR-QRGGAI 128 (250)
T ss_dssp TCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh-cCCCEE
Confidence 9865 6777665 68999999997532 35678899999999999999883 3 256799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..|.+.+..+. .|++
T Consensus 129 v~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 170 (250)
T 2fwm_X 129 VTVASDAAHTPR----------I----------------------------GMSAYGASKAALKSLALSVGLELAGSGVR 170 (250)
T ss_dssp EEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEECchhhCCCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhCccCCE
Confidence 999998764321 0 015799999999998887654 4899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHH-HHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLI-GAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~-~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++++|||.|.++...... ....... ... ..... .........+...+|+|++++.++..... ...+++
T Consensus 171 v~~v~Pg~v~t~~~~~~~-------~~~~~~~~~~~-~~~~~-~~~~~p~~~~~~p~dvA~~v~~l~s~~~~--~~tG~~ 239 (250)
T 2fwm_X 171 CNVVSPGSTDTDMQRTLW-------VSDDAEEQRIR-GFGEQ-FKLGIPLGKIARPQEIANTILFLASDLAS--HITLQD 239 (250)
T ss_dssp EEEEEECCC---------------------------------------------CHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEECCcccCccccccc-------cChhHHHHHHh-hhhhc-ccccCCCCCCcCHHHHHHHHHHHhCcccc--CCCCCE
Confidence 999999999876432110 0000000 000 00000 00000112367899999999998865432 136788
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 240 i~vdGG 245 (250)
T 2fwm_X 240 IVVDGG 245 (250)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 988876
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=168.16 Aligned_cols=220 Identities=12% Similarity=0.106 Sum_probs=149.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|+.. +++++.+ .++. ...++.++.+|+
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~Dl 102 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSVSH---VICISRTQK------SCDSVVD-----EIKS-----FGYESSGYAGDV 102 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSE---EEEEESSHH------HHHHHHH-----HHHT-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCE---EEEEcCCHH------HHHHHHH-----HHHh-----cCCceeEEECCC
Confidence 56899999999999999999999999865 777777532 2222111 1111 234688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 103 ~d~~------~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv 176 (285)
T 2c07_A 103 SKKE------EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRII 176 (285)
T ss_dssp TCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9865 6666653 68999999997532 3567788999999988887776531 2567999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..|.+++..+. .|+++
T Consensus 177 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 218 (285)
T 2c07_A 177 NISSIVGLTGNV--------------------------------------GQANYSSSKAGVIGFTKSLAKELASRNITV 218 (285)
T ss_dssp EECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECChhhccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 999986532210 015799999988888877654 48999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+++|||.|.++..... . ........... ....++.++|+|++++.++..... ...+++++
T Consensus 219 ~~v~Pg~v~t~~~~~~--------~-~~~~~~~~~~~---------~~~~~~~~~dvA~~~~~l~~~~~~--~~~G~~i~ 278 (285)
T 2c07_A 219 NAIAPGFISSDMTDKI--------S-EQIKKNIISNI---------PAGRMGTPEEVANLACFLSSDKSG--YINGRVFV 278 (285)
T ss_dssp EEEEECSBCC-----C--------C-HHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEeCcEecCchhhc--------C-HHHHHHHHhhC---------CCCCCCCHHHHHHHHHHHhCCCcC--CCCCCEEE
Confidence 9999999976543211 1 11111221111 112378999999999988865431 13578899
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 279 v~gG 282 (285)
T 2c07_A 279 IDGG 282 (285)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 8776
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=165.10 Aligned_cols=222 Identities=17% Similarity=0.175 Sum_probs=152.1
Q ss_pred cCCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGF-LGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGF-lG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+|+||||||+ ||++++++|++.|.+ |+++.|... ++++..+ .+++. ...++.++.+|
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~~~D 81 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGAD---VVISDYHER------RLGETRD-----QLADL----GLGRVEAVVCD 81 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHTT----CSSCEEEEECC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCE---EEEecCCHH------HHHHHHH-----HHHhc----CCCceEEEEeC
Confidence 67899999999985 999999999999876 888888642 2222211 11110 23579999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLEL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~ 240 (614)
+++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++.+... ++..+
T Consensus 82 l~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~ 155 (266)
T 3o38_A 82 VTSTE------AVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGV 155 (266)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEE
T ss_pred CCCHH------HHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeE
Confidence 99866 6666654 57999999996432 3567788999999999999988763 24468
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..|.+++..+. .|+
T Consensus 156 iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi 197 (266)
T 3o38_A 156 IVNNASVLGWRAQH--------------------------------------SQSHYAAAKAGVMALTRCSAIEAVEFGV 197 (266)
T ss_dssp EEEECCGGGTCCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEeCCHHHcCCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999987643210 015799999999998876654 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++..++||.|..+..... .. ...... .........+.+.+|+|++++.++..... ...+++
T Consensus 198 ~v~~v~PG~v~t~~~~~~-------~~-~~~~~~---------~~~~~~~~r~~~~~dva~~i~~l~s~~~~--~~tG~~ 258 (266)
T 3o38_A 198 RINAVSPSIARHKFLEKT-------SS-SELLDR---------LASDEAFGRAAEPWEVAATIAFLASDYSS--YMTGEV 258 (266)
T ss_dssp EEEEEEECCCCC----------------------------------CCTTSSCCCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEeCCcccchhhhcc-------Cc-HHHHHH---------HHhcCCcCCCCCHHHHHHHHHHHcCcccc--CccCCE
Confidence 999999998876532110 00 000000 11122334567899999999988865432 236889
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 259 i~vdgG 264 (266)
T 3o38_A 259 VSVSSQ 264 (266)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 998876
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=167.05 Aligned_cols=221 Identities=15% Similarity=0.133 Sum_probs=153.6
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+|+||||| |+||++++++|++.|.+ |+++.|+.. ..+.++++.+ ...++.++.+
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~---V~~~~r~~~---~~~~~~~l~~--------------~~~~~~~~~~ 78 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQ---LAFTYATPK---LEKRVREIAK--------------GFGSDLVVKC 78 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCE---EEEEESSGG---GHHHHHHHHH--------------HTTCCCEEEC
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCE---EEEEeCCHH---HHHHHHHHHH--------------hcCCeEEEEc
Confidence 568999999999 99999999999999875 888888753 2333333311 1123678999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-C-C
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-K-H 237 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~-~ 237 (614)
|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... . +
T Consensus 79 Dl~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 152 (285)
T 2p91_A 79 DVSLDE------DIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR 152 (285)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 999865 6666654 68999999996532 2456788999999999999998763 1 2
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+.... | ....|+.||+..|.+.+..+.
T Consensus 153 ~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~ 194 (285)
T 2p91_A 153 NGAIVTLSYYGAEKVV----------P----------------------------HYNVMGIAKAALESTVRYLAYDIAK 194 (285)
T ss_dssp CCEEEEEECGGGTSBC----------T----------------------------TTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEccchhccCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhcc
Confidence 3689999997653211 0 015799999999998877654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
.|+++++++||.|.++..... .............. + ...+.+++|+|++++.++..... ...
T Consensus 195 ~gi~v~~v~PG~v~t~~~~~~-------~~~~~~~~~~~~~~-------p--~~~~~~~~dva~~~~~l~s~~~~--~~t 256 (285)
T 2p91_A 195 HGHRINAISAGPVKTLAAYSI-------TGFHLLMEHTTKVN-------P--FGKPITIEDVGDTAVFLCSDWAR--AIT 256 (285)
T ss_dssp TTCEEEEEEECCCCCSCC--C-------TTHHHHHHHHHHHS-------T--TSSCCCHHHHHHHHHHHTSGGGT--TCC
T ss_pred cCcEEEEEEeCcccCchhhcc-------cchHHHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHcCCccc--CCC
Confidence 589999999999987643211 11112222111110 0 11256899999999988854331 135
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
+.++++.++
T Consensus 257 G~~~~vdgg 265 (285)
T 2p91_A 257 GEVVHVDNG 265 (285)
T ss_dssp SCEEEESTT
T ss_pred CCEEEECCC
Confidence 788998877
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=167.26 Aligned_cols=231 Identities=14% Similarity=0.100 Sum_probs=150.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|+... ..+.+.+. +... ...++.++.+|+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~--~~~~~~~~--------~~~~----~~~~~~~~~~D~ 64 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGAD---IVLNGFGDAA--EIEKVRAG--------LAAQ----HGVKVLYDGADL 64 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEECCSCHH--HHHHHHHH--------HHHH----HTSCEEEECCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCE---EEEEeCCcch--HHHHHHHH--------HHhc----cCCcEEEEECCC
Confidence 46899999999999999999999999876 8888886421 01111111 1110 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+... .+..++|
T Consensus 65 ~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 138 (260)
T 1x1t_A 65 SKGE------AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRII 138 (260)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 6666665 6899999999653 13567788999999999998887531 2467999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..|.+.+..+. .|+++
T Consensus 139 ~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 180 (260)
T 1x1t_A 139 NIASAHGLVAS----------A----------------------------NKSAYVAAKHGVVGFTKVTALETAGQGITA 180 (260)
T ss_dssp EECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred EECcHHhCcCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhccCCEEE
Confidence 99998654321 0 015799999999988876654 58999
Q ss_pred EEeecceeecccCCCC-ccccCCCCc--hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 319 LMLRPSIIIPVWREPL-PGWTDNING--PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~-~gw~d~~~g--~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++++||.|.++..... +.+... .+ +........ ........+...+|+|++++.++..... ...+.
T Consensus 181 ~~v~Pg~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~p~~~~~~p~dva~~~~~l~s~~~~--~~tG~ 249 (260)
T 1x1t_A 181 NAICPGWVRTPLVEKQISALAEK-NGVDQETAARELL--------SEKQPSLQFVTPEQLGGTAVFLASDAAA--QITGT 249 (260)
T ss_dssp EEEEECCBCC-------------------------CH--------HHHCTTCCCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEeecCccCchHHHhhhhhccc-cCCchHHHHHHHh--------hccCCCCCCcCHHHHHHHHHHHhChhhc--CCCCC
Confidence 9999999977643211 000000 00 000000000 0000113477899999999988865431 13678
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 250 ~~~vdgG 256 (260)
T 1x1t_A 250 TVSVDGG 256 (260)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9998876
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=167.80 Aligned_cols=234 Identities=13% Similarity=0.065 Sum_probs=160.5
Q ss_pred ccccccCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeE
Q psy6053 95 RIGETFTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKV 172 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v 172 (614)
.....+++|+|+||||+ |+||++++++|++.|.+ |+++.|..+. .++++++.+ ...++
T Consensus 7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~---V~~~~r~~~~---~~~~~~~~~--------------~~~~~ 66 (271)
T 3ek2_A 7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAE---LAFTYVGDRF---KDRITEFAA--------------EFGSE 66 (271)
T ss_dssp --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE---EEEEESSGGG---HHHHHHHHH--------------HTTCC
T ss_pred CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCC---EEEEecchhh---HHHHHHHHH--------------HcCCc
Confidence 34456789999999999 99999999999999875 8888887432 344443321 12347
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------------hHHHHHHHHHhHHHHHHHHHHHH
Q psy6053 173 LPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF------------DEALKKAVLLNTRGTKMMLSLAK 233 (614)
Q Consensus 173 ~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~ 233 (614)
.++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+.
T Consensus 67 ~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 140 (271)
T 3ek2_A 67 LVFPCDVADDA------QIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAAL 140 (271)
T ss_dssp CEEECCTTCHH------HHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHG
T ss_pred EEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88999999866 6776665 57999999996532 34567889999999999999987
Q ss_pred Hc-CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh
Q psy6053 234 EM-KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM 312 (614)
Q Consensus 234 ~~-~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~ 312 (614)
.. .+-.++|++||..+..... ....|+.||+..+.+.+..+
T Consensus 141 ~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la 182 (271)
T 3ek2_A 141 PMLSDDASLLTLSYLGAERAIP--------------------------------------NYNTMGLAKAALEASVRYLA 182 (271)
T ss_dssp GGEEEEEEEEEEECGGGTSBCT--------------------------------------TTTHHHHHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeccccccCCC--------------------------------------CccchhHHHHHHHHHHHHHH
Confidence 63 1234899999986543210 01579999999998887766
Q ss_pred h----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhh
Q psy6053 313 N----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388 (614)
Q Consensus 313 ~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~ 388 (614)
. .|+++..++||.|..+..... .............. ....+...+|+|++++.++.....
T Consensus 183 ~e~~~~gi~v~~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~pedva~~i~~l~s~~~~ 246 (271)
T 3ek2_A 183 VSLGAKGVRVNAISAGPIKTLAASGI-------KSFGKILDFVESNS---------PLKRNVTIEQVGNAGAFLLSDLAS 246 (271)
T ss_dssp HHHHTTTCEEEEEEECCC-----CCC-------HHHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT
T ss_pred HHHHhcCcEEEEEecCcccchhhhcc-------cchHHHHHHHHhcC---------CcCCCCCHHHHHHHHHHHcCcccC
Confidence 4 589999999999976543211 11112222222111 112356789999999998865432
Q ss_pred cCCCCccEEEeccCCcccccHHHH
Q psy6053 389 QKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 389 ~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
...++++++.++ ..++..++
T Consensus 247 --~~tG~~i~vdgG--~~~~~~~~ 266 (271)
T 3ek2_A 247 --GVTAEVMHVDSG--FNAVVGGM 266 (271)
T ss_dssp --TCCSEEEEESTT--GGGBCCCC
T ss_pred --CeeeeEEEECCC--eeeehhhh
Confidence 236889999988 66665554
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=170.04 Aligned_cols=229 Identities=11% Similarity=0.085 Sum_probs=153.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|+.. ++++..+ .++. ...++.++.+|+
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~Dv 80 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGLR---VFVCARGEE------GLRTTLK-----ELRE-----AGVEADGRTCDV 80 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHh-----cCCceEEEECCC
Confidence 56899999999999999999999999875 888888642 2222111 1111 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-----CCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-----KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-----~~~k~ 240 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..+
T Consensus 81 ~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~ 154 (277)
T 2rhc_B 81 RSVP------EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGR 154 (277)
T ss_dssp TCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeE
Confidence 9865 6666655 68999999996432 3456788999999999999987652 14579
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.... | ....|+.||+..|.+.+..+. .|+
T Consensus 155 iv~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi 196 (277)
T 2rhc_B 155 IVNIASTGGKQGV----------V----------------------------HAAPYSASKHGVVGFTKALGLELARTGI 196 (277)
T ss_dssp EEEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred EEEECccccccCC----------C----------------------------CCccHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999998653211 0 015799999999988877654 589
Q ss_pred CEEEeecceeecccCCCCcc-ccCCC-CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 317 PCLMLRPSIIIPVWREPLPG-WTDNI-NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~g-w~d~~-~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
+++++|||.|.++....... +.+.. ............ ......++.++|+|++++.++..... ...+
T Consensus 197 ~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~~~dvA~~v~~l~s~~~~--~~tG 265 (277)
T 2rhc_B 197 TVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITA---------RVPIGRYVQPSEVAEMVAYLIGPGAA--AVTA 265 (277)
T ss_dssp EEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred EEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCchhc--CCCC
Confidence 99999999987653110000 00000 000001111111 01123478999999999988865431 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.++
T Consensus 266 ~~~~vdGG 273 (277)
T 2rhc_B 266 QALNVCGG 273 (277)
T ss_dssp CEEEESTT
T ss_pred cEEEECCC
Confidence 89999876
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=166.79 Aligned_cols=222 Identities=15% Similarity=0.157 Sum_probs=146.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++|+|+||||||+||++++++|++.|.+ |+++ .|+.. ..+.+.+.+ . + ...++.++.+|
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~---V~~~~~~~~~---~~~~~~~~~--------~----~-~~~~~~~~~~D 84 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWR---VGVNYAANRE---AADAVVAAI--------T----E-SGGEAVAIPGD 84 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHH---HHHHHHHHH--------H----H-TTCEEEEEECC
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCChh---HHHHHHHHH--------H----h-cCCcEEEEEcC
Confidence 45789999999999999999999999876 6555 44321 112222111 1 1 33579999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc------CC
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM------KH 237 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~------~~ 237 (614)
+++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... ++
T Consensus 85 l~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~ 158 (272)
T 4e3z_A 85 VGNAA------DIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQ 158 (272)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCC
T ss_pred CCCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCC
Confidence 99865 6666655 67999999997542 3556788999999999999888653 12
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
..++|++||..+..... .....|+.||+..|.+++..+.
T Consensus 159 ~g~iv~isS~~~~~~~~-------------------------------------~~~~~Y~asKaa~~~~~~~la~e~~~ 201 (272)
T 4e3z_A 159 GGAIVNVSSMAAILGSA-------------------------------------TQYVDYAASKAAIDTFTIGLAREVAA 201 (272)
T ss_dssp CEEEEEECCTHHHHCCT-------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCEEEEEcchHhccCCC-------------------------------------CCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 45799999986532110 0014699999999998876655
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
.|+++.+++||.|.++.... ........... .......+..++|+|++++.++..... ...
T Consensus 202 ~gi~v~~v~PG~v~t~~~~~--------~~~~~~~~~~~---------~~~~~~~~~~~edvA~~i~~l~s~~~~--~~t 262 (272)
T 4e3z_A 202 EGIRVNAVRPGIIETDLHAS--------GGLPDRAREMA---------PSVPMQRAGMPEEVADAILYLLSPSAS--YVT 262 (272)
T ss_dssp GTEEEEEEEECSBC-----------------------------------CCTTSSCBCHHHHHHHHHHHHSGGGT--TCC
T ss_pred cCcEEEEEecCCCcCCcccc--------cCChHHHHHHh---------hcCCcCCCcCHHHHHHHHHHHhCCccc--ccc
Confidence 48999999999997764321 00000111111 111223356799999999998865432 136
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.+|
T Consensus 263 G~~i~vdgG 271 (272)
T 4e3z_A 263 GSILNVSGG 271 (272)
T ss_dssp SCEEEESTT
T ss_pred CCEEeecCC
Confidence 889999876
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-17 Score=162.79 Aligned_cols=224 Identities=13% Similarity=0.096 Sum_probs=153.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|++|||||+|+||++++++|++.|.+ |+++.|+.. ++++..+ +... ...++.++.+|
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~---------~~~~-~~~~~~~~~~D 63 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGAR---VVITGRTKE------KLEEAKL---------EIEQ-FPGQILTVQMD 63 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH---------HHCC-STTCEEEEECC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH---------HHHh-cCCcEEEEEcc
Confidence 367899999999999999999999999875 888888642 2222111 1111 33578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH----cCCCce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE----MKHLEL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~~~k~ 240 (614)
+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++.. .++..+
T Consensus 64 v~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~ 137 (257)
T 3imf_A 64 VRNTD------DIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGN 137 (257)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcE
Confidence 99976 6666665 68999999995421 356778899999999999988832 134578
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-----CC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-----NG 315 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-----~g 315 (614)
+|++||..+..... ....|+.||+..+.+.+..+. .|
T Consensus 138 iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~~g 179 (257)
T 3imf_A 138 IINMVATYAWDAGP--------------------------------------GVIHSAAAKAGVLAMTKTLAVEWGRKYG 179 (257)
T ss_dssp EEEECCGGGGSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECchhhccCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999986543210 014799999988888766542 48
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++..++||.|.++..... .|.+. .+...... ......+...+|+|++++.++..... -..++
T Consensus 180 Irvn~v~PG~v~t~~~~~~-~~~~~-----~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~ 242 (257)
T 3imf_A 180 IRVNAIAPGPIERTGGADK-LWISE-----EMAKRTIQ---------SVPLGRLGTPEEIAGLAYYLCSDEAA--YINGT 242 (257)
T ss_dssp CEEEEEEECCBSSCCCC-------------CCSHHHHT---------TSTTCSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred eEEEEEEECCCcCCcchhh-cccCH-----HHHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCchhc--CccCC
Confidence 9999999999976632110 01100 00001111 11122467899999999988865432 13688
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 243 ~i~vdGG 249 (257)
T 3imf_A 243 CMTMDGG 249 (257)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999887
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-17 Score=167.30 Aligned_cols=221 Identities=13% Similarity=0.068 Sum_probs=154.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |++..|..... ..+.+.+..+ . ...++.++.+|+
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G~~---V~~~~~~~~~~-~~~~~~~~~~------------~-~~~~~~~~~~Dv 109 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREGAD---VAINYLPAEEE-DAQQVKALIE------------E-CGRKAVLLPGDL 109 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECCGGGHH-HHHHHHHHHH------------H-TTCCEEECCCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCcchh-HHHHHHHHHH------------H-cCCcEEEEEecC
Confidence 57899999999999999999999999976 77777763221 1222222211 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~ 243 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+... .+-.++|+
T Consensus 110 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~ 183 (294)
T 3r3s_A 110 SDES------FARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT 183 (294)
T ss_dssp TSHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence 9865 6665554 6899999999643 13567788999999999999999763 12248999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+..|.+.+..+. +|+++.
T Consensus 184 isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 225 (294)
T 3r3s_A 184 TSSIQAYQPSP--------------------------------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVN 225 (294)
T ss_dssp ECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ECChhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 99987643211 015799999999988877654 589999
Q ss_pred EeecceeecccCCC---CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 320 MLRPSIIIPVWREP---LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 320 IvRp~~I~g~~~~p---~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
.++||.|.++.... .+.+... .........+...+|+|++++.++..... -..+++
T Consensus 226 ~v~PG~v~t~~~~~~~~~~~~~~~-------------------~~~~~p~~r~~~p~dvA~~v~~L~s~~~~--~itG~~ 284 (294)
T 3r3s_A 226 IVAPGPIWTALQISGGQTQDKIPQ-------------------FGQQTPMKRAGQPAELAPVYVYLASQESS--YVTAEV 284 (294)
T ss_dssp EEEECSBCSHHHHTTTSCGGGSTT-------------------TTTTSTTSSCBCGGGGHHHHHHHHSGGGT--TCCSCE
T ss_pred EEecCcCccccccccCCCHHHHHH-------------------HHhcCCCCCCcCHHHHHHHHHHHhCcccc--CCCCCE
Confidence 99999998764110 0000000 01111223456789999999988865432 136889
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.+|
T Consensus 285 i~vdGG 290 (294)
T 3r3s_A 285 HGVCGG 290 (294)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=165.28 Aligned_cols=221 Identities=17% Similarity=0.168 Sum_probs=146.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|.+ |+++.|+. ++++++.+ + ...++.++.+|+
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D~ 64 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGAK---VVIVDRDK------AGAERVAG---------E----IGDAALAVAADI 64 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HCTTEEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCH------HHHHHHHH---------H----hCCceEEEEecC
Confidence 56899999999999999999999999865 88888864 23332211 1 235689999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHcC-------C
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEMK-------H 237 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~~-------~ 237 (614)
++++ +++++++ ++|++||+||... -.+.++..+++|+.|+.++++.+...- +
T Consensus 65 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~ 138 (261)
T 3n74_A 65 SKEA------DVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQ 138 (261)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCC
Confidence 9865 6666665 6899999999754 235677789999999999888775420 1
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
..++|++||..+.... | ....|+.||+..+.+.+..+.
T Consensus 139 ~~~iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~ 180 (261)
T 3n74_A 139 ECVILNVASTGAGRPR----------P----------------------------NLAWYNATKGWVVSVTKALAIELAP 180 (261)
T ss_dssp CEEEEEECCTTTTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CeEEEEeCchhhcCCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhhh
Confidence 3469999998653221 0 014699999999988877654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+|+++..++||.|.++......+ . ....... ..........++.++|+|++++.++..... ...
T Consensus 181 ~gi~v~~v~PG~v~t~~~~~~~~---~--~~~~~~~---------~~~~~~~~~~~~~~~dva~~~~~l~s~~~~--~it 244 (261)
T 3n74_A 181 AKIRVVALNPVAGETPLLTTFMG---E--DSEEIRK---------KFRDSIPMGRLLKPDDLAEAAAFLCSPQAS--MIT 244 (261)
T ss_dssp GTEEEEEEEEC---------------------------------------CTTSSCCCHHHHHHHHHHHTSGGGT--TCC
T ss_pred cCcEEEEEecCcccChhhhhhcc---c--CcHHHHH---------HHhhcCCcCCCcCHHHHHHHHHHHcCCccc--CcC
Confidence 58999999999987764321100 0 0000000 011122234578999999999988854332 236
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.++
T Consensus 245 G~~i~vdgG 253 (261)
T 3n74_A 245 GVALDVDGG 253 (261)
T ss_dssp SCEEEESTT
T ss_pred CcEEEecCC
Confidence 889999887
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=168.54 Aligned_cols=223 Identities=14% Similarity=0.149 Sum_probs=153.3
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
....+++|+||||||+|+||++++++|++.|.+ |+++.|.... ....+..+
T Consensus 8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~---V~~~~r~~~~--------------------------~~~~~~~~ 58 (269)
T 3vtz_A 8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAK---VVSVSLDEKS--------------------------DVNVSDHF 58 (269)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESCC----------------------------CTTSSEEE
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCchh--------------------------ccCceeEE
Confidence 445678999999999999999999999999876 8888887543 11356788
Q ss_pred eCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCC
Q psy6053 176 SGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHL 238 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~ 238 (614)
.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+.
T Consensus 59 ~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~ 132 (269)
T 3vtz_A 59 KIDVTNEE------EVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGH 132 (269)
T ss_dssp ECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred EecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence 99999865 6666665 68999999997432 3557788999999999998876541 245
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CC
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NG 315 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~g 315 (614)
.++|++||..+..... ....|+.||+..|.+.+..+. .+
T Consensus 133 g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~ 174 (269)
T 3vtz_A 133 GSIINIASVQSYAATK--------------------------------------NAAAYVTSKHALLGLTRSVAIDYAPK 174 (269)
T ss_dssp EEEEEECCGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEEEECchhhccCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhcCC
Confidence 7899999987643211 015799999999999887665 38
Q ss_pred CCEEEeecceeecccCCCCcccc--CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWT--DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~--d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+.+..++||.|.++......... ............... ......+..++|+|++++.++..... -..
T Consensus 175 i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~--~it 243 (269)
T 3vtz_A 175 IRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGR---------QHPMGRIGRPEEVAEVVAFLASDRSS--FIT 243 (269)
T ss_dssp EEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHSGGGT--TCC
T ss_pred CEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCCccC--CCc
Confidence 99999999998765311000000 000000111111111 11223467899999999988865432 236
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.++
T Consensus 244 G~~i~vdGG 252 (269)
T 3vtz_A 244 GACLTVDGG 252 (269)
T ss_dssp SCEEEESTT
T ss_pred CcEEEECCC
Confidence 889999887
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=167.46 Aligned_cols=233 Identities=14% Similarity=0.177 Sum_probs=156.2
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+...+++|++|||||+|+||++++++|++.|.+ |+++.|+. +++++..+ .+. + ...++.++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~----~-~~~~~~~~ 65 (264)
T 3ucx_A 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGAD---LVLAARTV------ERLEDVAK-----QVT----D-TGRRALSV 65 (264)
T ss_dssp --CTTTTCEEEEESCCTTHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----H-TTCCEEEE
T ss_pred cCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCE---EEEEeCCH------HHHHHHHH-----HHH----h-cCCcEEEE
Confidence 445578999999999999999999999999876 88888863 22222211 111 1 33578999
Q ss_pred eCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc--CCC
Q psy6053 176 SGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM--KHL 238 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~--~~~ 238 (614)
.+|+++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... ++-
T Consensus 66 ~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~ 139 (264)
T 3ucx_A 66 GTDITDDA------QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK 139 (264)
T ss_dssp ECCTTCHH------HHHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT
T ss_pred EcCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 99999976 6666664 6899999998642 1 2567788999999999999887542 111
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+..... ....|+.||+..+.+.+..+. +
T Consensus 140 g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~ 181 (264)
T 3ucx_A 140 GAVVNVNSMVVRHSQA--------------------------------------KYGAYKMAKSALLAMSQTLATELGEK 181 (264)
T ss_dssp CEEEEECCGGGGCCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECcchhccCCC--------------------------------------ccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 5899999986543210 014799999999988876654 6
Q ss_pred CCCEEEeecceeecccCCCCcccc-CC-CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWT-DN-INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~-d~-~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
|+++..++||.|.++......... .. ...+......... ......+..++|+|++++.++..... -.
T Consensus 182 gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~p~dvA~~v~~L~s~~~~--~i 250 (264)
T 3ucx_A 182 GIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAA---------GSDLKRLPTEDEVASAILFMASDLAS--GI 250 (264)
T ss_dssp TCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHT---------TSSSSSCCBHHHHHHHHHHHHSGGGT--TC
T ss_pred CeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhc---------cCCcccCCCHHHHHHHHHHHcCcccc--CC
Confidence 899999999999765321100000 00 0001111111111 22233577899999999988865432 23
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.++++++.++
T Consensus 251 tG~~i~vdGG 260 (264)
T 3ucx_A 251 TGQALDVNCG 260 (264)
T ss_dssp CSCEEEESTT
T ss_pred CCCEEEECCC
Confidence 6889999877
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-17 Score=163.52 Aligned_cols=220 Identities=13% Similarity=0.111 Sum_probs=149.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+. +++++..+ + ...++.++.+|+
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D~ 61 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAK---VAFSDINE------AAGQQLAA---------E----LGERSMFVRHDV 61 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEECSCH------HHHHHHHH---------H----HCTTEEEECCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----cCCceEEEEccC
Confidence 56899999999999999999999999876 88888863 22332211 0 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V 242 (614)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. + .+ .++|
T Consensus 62 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv 134 (253)
T 1hxh_A 62 SSEA------DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSII 134 (253)
T ss_dssp TCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEE
Confidence 9865 6666654 46999999997532 356778899999988777665432 1 24 7999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C--CC
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N--GM 316 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~--gl 316 (614)
++||..+..... ....|+.||+..|.+.+..+. . |+
T Consensus 135 ~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi 176 (253)
T 1hxh_A 135 NMASVSSWLPIE--------------------------------------QYAGYSASKAAVSALTRAAALSCRKQGYAI 176 (253)
T ss_dssp EECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred EEcchhhcCCCC--------------------------------------CCccHHHHHHHHHHHHHHHHHHhhhcCCCe
Confidence 999987643210 014799999999998887654 3 89
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHH-HhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIG-AGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~-~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++++|||.|.++.... +.+. ..... ..... .......+...+|+|++++.++..... ...++
T Consensus 177 ~v~~v~Pg~v~t~~~~~---~~~~-----~~~~~~~~~~~------~~~p~~~~~~~~dvA~~~~~l~s~~~~--~~tG~ 240 (253)
T 1hxh_A 177 RVNSIHPDGIYTPMMQA---SLPK-----GVSKEMVLHDP------KLNRAGRAYMPERIAQLVLFLASDESS--VMSGS 240 (253)
T ss_dssp EEEEEEESEECCHHHHH---HSCT-----TCCHHHHBCBT------TTBTTCCEECHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEEEEeCCccCchhhh---ccch-----hhhHHHHhhhh------ccCccCCCCCHHHHHHHHHHHcCcccc--CCCCc
Confidence 99999999998764210 0000 00000 10000 000112467899999999998865432 13578
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 241 ~~~vdgG 247 (253)
T 1hxh_A 241 ELHADNS 247 (253)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 8988776
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=170.86 Aligned_cols=172 Identities=19% Similarity=0.294 Sum_probs=126.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|++ |++.+|...+.+ .++++++.+ .++ . ...++.++.+|+
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~---V~~~~r~~~~r~-~~~~~~l~~-----~~~----~-~~~~~~~~~~Dv 68 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHR---VYASMRDIVGRN-ASNVEAIAG-----FAR----D-NDVDLRTLELDV 68 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESCTTTTT-HHHHHHHHH-----HHH----H-HTCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEecCcccccC-HHHHHHHHH-----HHH----h-cCCcEEEEEeec
Confidence 35789999999999999999999999976 889999754332 233333211 011 1 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++ ++ .+..++
T Consensus 69 td~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~-~~~g~i 141 (324)
T 3u9l_A 69 QSQV------SVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRR-QKHGLL 141 (324)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCEE
Confidence 9865 6777665 79999999996421 3556788999999999999998 44 366799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... | ....|+.||+..|.+.+..+. .|++
T Consensus 142 V~isS~~~~~~~~---------~----------------------------~~~~Y~asKaa~~~~~~~la~el~~~gI~ 184 (324)
T 3u9l_A 142 IWISSSSSAGGTP---------P----------------------------YLAPYFAAKAAMDAIAVQYARELSRWGIE 184 (324)
T ss_dssp EEECCGGGTSCCC---------S----------------------------SCHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred EEEecchhccCCC---------C----------------------------cchhHHHHHHHHHHHHHHHHHHhhhhCcE
Confidence 9999987642110 0 014799999999998887655 5899
Q ss_pred EEEeecceeecc
Q psy6053 318 CLMLRPSIIIPV 329 (614)
Q Consensus 318 ~~IvRp~~I~g~ 329 (614)
+++++||.|.++
T Consensus 185 v~~v~PG~v~t~ 196 (324)
T 3u9l_A 185 TSIIVPGAFTSG 196 (324)
T ss_dssp EEEEEECCC---
T ss_pred EEEEECCccccC
Confidence 999999999754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=167.98 Aligned_cols=245 Identities=10% Similarity=0.075 Sum_probs=159.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC------HHHHHHHHHhChhhHHhhhhccccccCeEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN------ARQRIEELFASPLFNLLKSVHGQKIIDKVL 173 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~------~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~ 173 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|...... ..+++++... .+. . ...++.
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~~~~~~ 74 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGAD---IILFDICHDIETNEYPLATSRDLEEAGL-----EVE----K-TGRKAY 74 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSCCTTSCSCCCCHHHHHHHHH-----HHH----H-TTSCEE
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCe---EEEEcccccccccccchhhhHHHHHHHH-----HHH----h-cCCceE
Confidence 67899999999999999999999999876 888888733211 1233332211 011 1 335799
Q ss_pred EEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----hHHHHHHHHHhHHHHHHHHHHHHHc-CCCce
Q psy6053 174 PISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----DEALKKAVLLNTRGTKMMLSLAKEM-KHLEL 240 (614)
Q Consensus 174 ~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~ 240 (614)
++.+|+++++ +++++++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+-.+
T Consensus 75 ~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~ 148 (287)
T 3pxx_A 75 TAEVDVRDRA------AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGAS 148 (287)
T ss_dssp EEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCE
T ss_pred EEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcE
Confidence 9999999876 6666655 78999999997542 3567889999999999999998763 23458
Q ss_pred EEEEeCceeccCCc--ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 241 FVHISTAYCHLQEK--VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 241 ~V~vST~~~~~~~~--~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
+|++||..+..... +..|.. + .| ....|+.||+..+.+.+..+. +
T Consensus 149 iv~isS~~~~~~~~~~~~~~~~---~---------------------~~-----~~~~Y~asK~a~~~~~~~la~e~~~~ 199 (287)
T 3pxx_A 149 IITTGSVAGLIAAAQPPGAGGP---Q---------------------GP-----GGAGYSYAKQLVDSYTLQLAAQLAPQ 199 (287)
T ss_dssp EEEECCHHHHHHHHCCC--------C---------------------HH-----HHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEEeccchhccccccccccccc---C---------------------CC-----ccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999986543211 111110 0 00 014799999999998877665 4
Q ss_pred CCCEEEeecceeecccCCCCcc---ccCCCC--chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPG---WTDNIN--GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ 389 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~g---w~d~~~--g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~ 389 (614)
|+++..++||.|.++.....+. +..... ......... .........+..++|+|++++.++.....
T Consensus 200 gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~p~dva~~v~fL~s~~a~- 270 (287)
T 3pxx_A 200 SIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAF--------PAMQAMPTPYVEASDISNAVCFLASDESR- 270 (287)
T ss_dssp TCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHG--------GGGCSSSCSCBCHHHHHHHHHHHHSGGGT-
T ss_pred CcEEEEEecCccccccccccchhhhhccccccchhHHHHhhh--------hhhcccCCCCCCHHHHHhhHheecchhhc-
Confidence 8999999999997764321100 000000 000000000 00111114678999999999988865432
Q ss_pred CCCCccEEEeccC
Q psy6053 390 KEHRQSIVHLTSS 402 (614)
Q Consensus 390 ~~~~~~vyni~~~ 402 (614)
-..+.++++.+|
T Consensus 271 -~itG~~i~vdGG 282 (287)
T 3pxx_A 271 -YVTGLQFKVDAG 282 (287)
T ss_dssp -TCCSCEEEESTT
T ss_pred -CCCCceEeECch
Confidence 136889999887
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=166.28 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=152.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|.+ |+++.|.... ..+.+.+.++ . ...++.++.+|+
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~---V~~~~r~~~~--~~~~~~~~~~------------~-~~~~~~~~~~D~ 88 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGLK---VWINYRSNAE--VADALKNELE------------E-KGYKAAVIKFDA 88 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHHHH------------H-TTCCEEEEECCT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCCHH--HHHHHHHHHH------------h-cCCceEEEECCC
Confidence 57899999999999999999999999876 8888885421 1222222111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++++++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 89 ~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv 162 (271)
T 4iin_A 89 ASES------DFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVV 162 (271)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEE
Confidence 9865 6666654 78999999997532 3567788999999999988877542 2557899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..|.+++..+. .|+++
T Consensus 163 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 204 (271)
T 4iin_A 163 NVASIIGERGNM--------------------------------------GQTNYSASKGGMIAMSKSFAYEGALRNIRF 204 (271)
T ss_dssp EECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred EEechhhcCCCC--------------------------------------CchHhHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 999986532210 015799999999988877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|..+.....+. ..... .........+.+.+|+|++++.++..... -..+++++
T Consensus 205 ~~v~PG~v~T~~~~~~~~---------~~~~~---------~~~~~~~~~~~~p~dvA~~i~~l~s~~~~--~itG~~i~ 264 (271)
T 4iin_A 205 NSVTPGFIETDMNANLKD---------ELKAD---------YVKNIPLNRLGSAKEVAEAVAFLLSDHSS--YITGETLK 264 (271)
T ss_dssp EEEEECSBCCC------------------------------CGGGCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEeCcccCCchhhhcH---------HHHHH---------HHhcCCcCCCcCHHHHHHHHHHHhCCCcC--CCcCCEEE
Confidence 999999886553221110 00000 11111223477899999999988865432 23688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 265 vdGG 268 (271)
T 4iin_A 265 VNGG 268 (271)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 8876
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-17 Score=161.81 Aligned_cols=218 Identities=14% Similarity=0.151 Sum_probs=147.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|... +++++.+ +. ...++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~-----~~~~~~~--------~~-----~~~~~~~~~~Dv 63 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGAD---IAIADLVPA-----PEAEAAI--------RN-----LGRRVLTVKCDV 63 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCC-----HHHHHHH--------HH-----TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEcCCch-----hHHHHHH--------Hh-----cCCcEEEEEeec
Confidence 56899999999999999999999999875 888888752 1122111 00 224688999999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceE
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~ 241 (614)
++++ +++.++ .++|++||+||.... .+.++..+++|+.|+.++++.+ ++ .+..++
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~i 136 (249)
T 2ew8_A 64 SQPG------DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKR-NGWGRI 136 (249)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCeEE
Confidence 9865 666654 378999999996532 3557788999999988887774 34 256799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+..+. .|++
T Consensus 137 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 178 (249)
T 2ew8_A 137 INLTSTTYWLKIE--------------------------------------AYTHYISTKAANIGFTRALASDLGKDGIT 178 (249)
T ss_dssp EEECCGGGGSCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHHHhcCcE
Confidence 9999987643210 015799999999998877654 5899
Q ss_pred EEEeecceeecccCC-CCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 318 CLMLRPSIIIPVWRE-PLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~-p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++++||.|.++... ... ... ........ .....+...+|+|++++.++..... ...+++
T Consensus 179 v~~v~Pg~v~t~~~~~~~~-------~~~---~~~~~~~~-------~~~~~~~~p~dva~~~~~l~s~~~~--~~tG~~ 239 (249)
T 2ew8_A 179 VNAIAPSLVRTATTEASAL-------SAM---FDVLPNML-------QAIPRLQVPLDLTGAAAFLASDDAS--FITGQT 239 (249)
T ss_dssp EEEEEECCC----------------------------CTT-------SSSCSCCCTHHHHHHHHHHTSGGGT--TCCSCE
T ss_pred EEEEecCcCcCccchhccc-------cch---hhHHHHhh-------CccCCCCCHHHHHHHHHHHcCcccC--CCCCcE
Confidence 999999999775422 100 000 00000000 0112367899999999988864321 136788
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 240 ~~vdGG 245 (249)
T 2ew8_A 240 LAVDGG 245 (249)
T ss_dssp EEESSS
T ss_pred EEECCC
Confidence 988776
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=164.21 Aligned_cols=223 Identities=11% Similarity=0.106 Sum_probs=153.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|.. +++++..+. ...++.++.+|+
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~Dv 82 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNGAY---VVVADVNE------DAAVRVANE-------------IGSKAFGVRVDV 82 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSH------HHHHHHHHH-------------HCTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHHH-------------hCCceEEEEecC
Confidence 56899999999999999999999999875 88888863 223322110 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 83 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv 156 (277)
T 4dqx_A 83 SSAK------DAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSII 156 (277)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9876 6666665 68999999996421 3567788999999999998887542 2446899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 157 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v 198 (277)
T 4dqx_A 157 NTTSYTATSAIA--------------------------------------DRTAYVASKGAISSLTRAMAMDHAKEGIRV 198 (277)
T ss_dssp EECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECchhhCcCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 999986542210 015799999999988877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++... ........+......... ......+..++|+|++++.++..... -..+++++
T Consensus 199 n~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~ 264 (277)
T 4dqx_A 199 NAVAPGTIDSPYFT---KIFAEAKDPAKLRSDFNA---------RAVMDRMGTAEEIAEAMLFLASDRSR--FATGSILT 264 (277)
T ss_dssp EEEEECSBCCHHHH---HHHHTCSCHHHHHHHHHT---------TSTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCcCcCchhh---hhcccccchhHHHHHHHh---------cCcccCCcCHHHHHHHHHHHhCCccC--CCcCCEEE
Confidence 99999988654200 000000111111111111 12223467899999999988865432 13688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 265 vdGG 268 (277)
T 4dqx_A 265 VDGG 268 (277)
T ss_dssp ESSS
T ss_pred ECCc
Confidence 9887
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=167.65 Aligned_cols=219 Identities=11% Similarity=0.140 Sum_probs=151.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|.+ |+++.|.... ..+.+.+.+ + . ...++.++.+|+
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~~---V~~~~~~~~~--~~~~~~~~~--------~----~-~~~~~~~~~~D~ 87 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGAK---VAVNYASSAG--AADEVVAAI--------A----A-AGGEAFAVKADV 87 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHHH--------H----H-TTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCChH--HHHHHHHHH--------H----h-cCCcEEEEECCC
Confidence 57899999999999999999999999876 7777875321 112222111 1 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 88 ~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv 161 (269)
T 4dmm_A 88 SQES------EVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRII 161 (269)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9976 6666665 68999999997532 3567788999999999999887431 2456899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 162 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v 203 (269)
T 4dmm_A 162 NIASVVGEMGNP--------------------------------------GQANYSAAKAGVIGLTKTVAKELASRGITV 203 (269)
T ss_dssp EECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EECchhhcCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHHhhhCcEE
Confidence 999986532210 015799999977777665544 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++.... . .-...... .....+..++|+|++++.++..+... -..+++++
T Consensus 204 n~v~PG~v~T~~~~~-----------~-~~~~~~~~---------~p~~r~~~~~dvA~~v~~l~s~~~~~-~itG~~i~ 261 (269)
T 4dmm_A 204 NAVAPGFIATDMTSE-----------L-AAEKLLEV---------IPLGRYGEAAEVAGVVRFLAADPAAA-YITGQVIN 261 (269)
T ss_dssp EEEEECCBTTSCSCH-----------H-HHHHHGGG---------CTTSSCBCHHHHHHHHHHHHHCGGGG-GCCSCEEE
T ss_pred EEEEECCCcCccccc-----------c-cHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCCcccC-CCcCCEEE
Confidence 999999987653210 0 00111111 11224677899999999988763210 13588999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 262 vdGG 265 (269)
T 4dmm_A 262 IDGG 265 (269)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9877
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-17 Score=163.06 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=151.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+++||||||+||++++++|++.|.+ |+++.|+...... +.+.+. ++ . ...++.++.+|+++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~~~-~~~~~~--------~~----~-~~~~~~~~~~Dv~~ 64 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFD---IAVADLPQQEEQA-AETIKL--------IE----A-ADQKAVFVGLDVTD 64 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCE---EEEEECGGGHHHH-HHHHHH--------HH----T-TTCCEEEEECCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCcchHHH-HHHHHH--------HH----h-cCCcEEEEEccCCC
Confidence 689999999999999999999999876 8888887532101 111111 11 1 23468899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCC-ceEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHL-ELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~-k~~V~ 243 (614)
++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+. .++|+
T Consensus 65 ~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~ 138 (258)
T 3a28_C 65 KA------NFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIIN 138 (258)
T ss_dssp HH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 65 6666655 78999999996532 3567788999999999999888652 244 79999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... | ....|+.||+..|.+.+..+. .|+++.
T Consensus 139 isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn 180 (258)
T 3a28_C 139 AASIAAIQGF----------P----------------------------ILSAYSTTKFAVRGLTQAAAQELAPKGHTVN 180 (258)
T ss_dssp ECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ECcchhccCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHHHhhCeEEE
Confidence 9998653321 0 015799999999988877654 589999
Q ss_pred EeecceeecccCCCCccccCCC---Cch--HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNI---NGP--TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~---~g~--~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
+++||.|..+... .+.... .++ .......... .....+...+|+|++++.++..... -..+
T Consensus 181 ~v~PG~v~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~~l~s~~~~--~~tG 246 (258)
T 3a28_C 181 AYAPGIVGTGMWE---QIDAELSKINGKPIGENFKEYSSS---------IALGRPSVPEDVAGLVSFLASENSN--YVTG 246 (258)
T ss_dssp EEEECCBCSHHHH---HHHHHHHHHHCCCTTHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred EEECCccCChhhh---hhhhhhccccCCchHHHHHHHHhc---------CCCCCccCHHHHHHHHHHHhCcccC--CCCC
Confidence 9999988554210 000000 000 0011111110 0112367899999999988865431 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.++
T Consensus 247 ~~i~vdGG 254 (258)
T 3a28_C 247 QVMLVDGG 254 (258)
T ss_dssp CEEEESSS
T ss_pred CEEEECCC
Confidence 88988876
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=164.43 Aligned_cols=231 Identities=15% Similarity=0.077 Sum_probs=149.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+. +++++..+ .+....+ ..++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~~~~---~~~~~~~~~D~ 67 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGAR---LLLFSRNR------EKLEAAAS-----RIASLVS---GAQVDIVAGDI 67 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHHST---TCCEEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHhcCC---CCeEEEEEccC
Confidence 56899999999999999999999999875 88888863 22222211 1111000 12688999999
Q ss_pred CCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++.+.+... .+..++|+
T Consensus 68 ~~~~------~v~~~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~ 141 (260)
T 2z1n_A 68 REPG------DIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVY 141 (260)
T ss_dssp TCHH------HHHHHHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9865 6777665 59999999996432 3467788999999997776655421 35689999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+..+.+.+..+. .|++++
T Consensus 142 isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 183 (260)
T 2z1n_A 142 IGSVTLLRPWQ--------------------------------------DLALSNIMRLPVIGVVRTLALELAPHGVTVN 183 (260)
T ss_dssp ECCGGGTSCCT--------------------------------------TBHHHHHHTHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECchhhcCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHhhhCeEEE
Confidence 99987643210 015799999999888876654 589999
Q ss_pred EeecceeecccCCCCc-cccCCCCchHHH-HHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 320 MLRPSIIIPVWREPLP-GWTDNINGPTGL-LIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~-gw~d~~~g~~~~-~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
++|||.|.++...... ........+... ..... .......+...+|+|++++.++..... ...++++
T Consensus 184 ~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~~r~~~~~dva~~v~~l~s~~~~--~~tG~~i 252 (260)
T 2z1n_A 184 AVLPSLILTDRVRSLAEERARRSGITVEEALKSMA---------SRIPMGRVGKPEELASVVAFLASEKAS--FITGAVI 252 (260)
T ss_dssp EEEECHHHHCCCC--------------------------------CCTTSSCCCHHHHHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEECCcccchhhhhhhhhhcccCCcHHHHHHHHH---------hcCCCCCccCHHHHHHHHHHHhCcccc--CCCCCEE
Confidence 9999999876432100 000000000000 00000 011112367899999999988865432 1367888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 253 ~vdGG 257 (260)
T 2z1n_A 253 PVDGG 257 (260)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 88776
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=162.66 Aligned_cols=211 Identities=11% Similarity=0.125 Sum_probs=145.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|.... ..+.+.+ .++.++.+|+
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~~--~~~~~~~-------------------~~~~~~~~Dv 80 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHGHR---VIISYRTEHA--SVTELRQ-------------------AGAVALYGDF 80 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTTCC---EEEEESSCCH--HHHHHHH-------------------HTCEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCChHH--HHHHHHh-------------------cCCeEEECCC
Confidence 56899999999999999999999999987 8889997642 1222211 1367899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 81 ~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~ 154 (260)
T 3gem_A 81 SCET------GIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVH 154 (260)
T ss_dssp TSHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9865 6666664 58999999996431 3456778999999999999887542 34568999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLM 320 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~I 320 (614)
+||..+..... ....|+.||+..|.+.+..+. .++++..
T Consensus 155 isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~ 196 (260)
T 3gem_A 155 ISDDVTRKGSS--------------------------------------KHIAYCATKAGLESLTLSFAARFAPLVKVNG 196 (260)
T ss_dssp ECCGGGGTCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred ECChhhcCCCC--------------------------------------CcHhHHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 99986543210 015799999999988877665 3699999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.|..+...+ .......... ....-+..++|+|++++.++.... ..++++++.
T Consensus 197 v~PG~v~t~~~~~-----------~~~~~~~~~~---------~p~~r~~~~edva~~v~~L~~~~~----itG~~i~vd 252 (260)
T 3gem_A 197 IAPALLMFQPKDD-----------AAYRANALAK---------SALGIEPGAEVIYQSLRYLLDSTY----VTGTTLTVN 252 (260)
T ss_dssp EEECTTCC-----------------------------------CCSCCCCCTHHHHHHHHHHHHCSS----CCSCEEEES
T ss_pred EeecccccCCCCC-----------HHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhhCCC----CCCCEEEEC
Confidence 9999886542110 0011111111 011124568999999999884332 378899998
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 253 GG 254 (260)
T 3gem_A 253 GG 254 (260)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=165.01 Aligned_cols=217 Identities=14% Similarity=0.116 Sum_probs=149.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|.+ |+++.|.... ..++.++.+|+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~---------------------------~~~~~~~~~Dl 55 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSK---VIDLSIHDPG---------------------------EAKYDHIECDV 55 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESSCCC---------------------------SCSSEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEecCccc---------------------------CCceEEEEecC
Confidence 56899999999999999999999999875 8888987532 13578899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 56 ~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv 129 (264)
T 2dtx_A 56 TNPD------QVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIV 129 (264)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 6666665 68999999996532 3567788999999999998888652 2457999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCL 319 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~ 319 (614)
++||..+..... ....|+.||+..|.+.+..+. ..++++
T Consensus 130 ~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn 171 (264)
T 2dtx_A 130 NISSVQASIITK--------------------------------------NASAYVTSKHAVIGLTKSIALDYAPLLRCN 171 (264)
T ss_dssp EECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred EECCchhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999987643210 015799999999999887665 128999
Q ss_pred EeecceeecccCCCCccccCCCCchH---HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPT---GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~---~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++||.|.++..........+ .... ........+ .....++.++|+|++++.++..... -..+++
T Consensus 172 ~v~PG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~p~~~~~~p~dvA~~v~~l~s~~~~--~~tG~~ 239 (264)
T 2dtx_A 172 AVCPATIDTPLVRKAAELEVG-SDPMRIEKKISEWGHE---------HPMQRIGKPQEVASAVAFLASREAS--FITGTC 239 (264)
T ss_dssp EEEECSBCSHHHHHHHHHHHC-SCHHHHHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEeCCCcCcchhhhhhcccc-cCchhhHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhc--CCCCcE
Confidence 999998855421000000000 0000 111111110 1113478999999999988865431 136788
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 240 i~vdGG 245 (264)
T 2dtx_A 240 LYVDGG 245 (264)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 888776
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=165.79 Aligned_cols=217 Identities=12% Similarity=0.124 Sum_probs=148.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|.. |++..|+. ++++++.+ + ...++.++.+|+
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~Dv 82 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQGAI---VGLHGTRE------DKLKEIAA---------D----LGKDVFVFSANL 82 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HCSSEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----hCCceEEEEeec
Confidence 67899999999999999999999999875 78888753 33333211 0 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++.+.+... .+..++|
T Consensus 83 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv 156 (266)
T 3grp_A 83 SDRK------SIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRII 156 (266)
T ss_dssp TSHH------HHHHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9976 6766665 78999999997532 3567788999999976666655321 3557999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 157 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~v 198 (266)
T 3grp_A 157 NITSIVGVVGNP--------------------------------------GQTNYCAAKAGLIGFSKALAQEIASRNITV 198 (266)
T ss_dssp EECCC---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHHcCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 999986532210 015799999988777766554 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++.... . . .........+ .....+...+|+|++++.++..... -..+++++
T Consensus 199 n~v~PG~v~t~~~~~-------~-~-~~~~~~~~~~---------~p~~r~~~~edvA~~v~~L~s~~~~--~itG~~i~ 258 (266)
T 3grp_A 199 NCIAPGFIKSAMTDK-------L-N-EKQKEAIMAM---------IPMKRMGIGEEIAFATVYLASDEAA--YLTGQTLH 258 (266)
T ss_dssp EEEEECSBCSHHHHT-------C-C-HHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCcCCCchhhc-------c-C-HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc--CccCCEEE
Confidence 999999987653211 0 1 1111222221 1123456789999999988865432 13688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 259 vdGG 262 (266)
T 3grp_A 259 INGG 262 (266)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9876
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=165.51 Aligned_cols=221 Identities=15% Similarity=0.091 Sum_probs=152.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++|+||||||+|+||++++++|++.|.+ |+++ .|+.. ..+.+.+.+ + . ...++.++.+|+
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~---vv~~~~r~~~---~~~~~~~~~--------~----~-~~~~~~~~~~Dv 63 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYN---IVINYARSKK---AALETAEEI--------E----K-LGVKVLVVKANV 63 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESSCHH---HHHHHHHHH--------H----T-TTCCEEEEECCT
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCE---EEEEcCCCHH---HHHHHHHHH--------H----h-cCCcEEEEEcCC
Confidence 5789999999999999999999999976 6665 56431 112221111 1 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv 137 (258)
T 3oid_A 64 GQPA------KIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIV 137 (258)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9976 6666665 56999999985321 3557778999999999999888531 3456899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 138 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v 179 (258)
T 3oid_A 138 SISSLGSIRYLE--------------------------------------NYTTVGVSKAALEALTRYLAVELSPKQIIV 179 (258)
T ss_dssp EEEEGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEE
T ss_pred EECchhhCCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 999986542210 015799999999998887665 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|..+.... ............... ....+..++|+|++++.++..... -..+++++
T Consensus 180 n~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~~---------p~~r~~~~~dva~~v~~L~s~~~~--~itG~~i~ 241 (258)
T 3oid_A 180 NAVSGGAIDTDALKH-------FPNREDLLEDARQNT---------PAGRMVEIKDMVDTVEFLVSSKAD--MIRGQTII 241 (258)
T ss_dssp EEEEECCBCSGGGGG-------CTTHHHHHHHHHHHC---------TTSSCBCHHHHHHHHHHHTSSTTT--TCCSCEEE
T ss_pred EEEeeCCCcChhhhh-------cccCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccC--CccCCEEE
Confidence 999999997654321 111112222222211 113467899999999988865432 13688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 242 vdGG 245 (258)
T 3oid_A 242 VDGG 245 (258)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=164.14 Aligned_cols=228 Identities=14% Similarity=0.159 Sum_probs=152.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||||+||++++++|++.|++ |+++.|+.. ++++..+ .++...+.....++.++.+|
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~~~~~~~~~~~~~~~D 80 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSN---VVIASRKLE------RLKSAAD-----ELQANLPPTKQARVIPIQCN 80 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHTSCTTCCCCEEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHhhccccCCccEEEEecC
Confidence 467899999999999999999999999875 888888632 2222111 11111110023578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... .+..++
T Consensus 81 ~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~i 154 (303)
T 1yxm_A 81 IRNEE------EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSI 154 (303)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeE
Confidence 99865 6766665 4899999999532 13456778999999999999998652 134689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||.. .... |. ...|+.||+..+.+.+..+. .|++
T Consensus 155 v~isS~~-~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 195 (303)
T 1yxm_A 155 VNIIVPT-KAGF----------PL----------------------------AVHSGAARAGVYNLTKSLALEWACSGIR 195 (303)
T ss_dssp EEECCCC-TTCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred EEEEeec-ccCC----------Cc----------------------------chhhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986 2110 00 14799999988888876654 4899
Q ss_pred EEEeecceeecccC-CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 318 CLMLRPSIIIPVWR-EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 318 ~~IvRp~~I~g~~~-~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++++|||.|+++.. .....+... . ...... ......+..++|+|++++.++..... ...+++
T Consensus 196 v~~v~Pg~v~t~~~~~~~~~~~~~------~----~~~~~~-----~~p~~~~~~~~dvA~~i~~l~~~~~~--~~~G~~ 258 (303)
T 1yxm_A 196 INCVAPGVIYSQTAVENYGSWGQS------F----FEGSFQ-----KIPAKRIGVPEEVSSVVCFLLSPAAS--FITGQS 258 (303)
T ss_dssp EEEEEECSBCCTGGGTTSGGGGGG------G----GTTGGG-----GSTTSSCBCTHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEecCCcccchhhhhccccchH------H----HHHHHh-----cCcccCCCCHHHHHHHHHHHhCcccc--cCCCcE
Confidence 99999999998731 111110000 0 011000 00112378899999999998854331 136789
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 259 ~~v~gG 264 (303)
T 1yxm_A 259 VDVDGG 264 (303)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=168.15 Aligned_cols=225 Identities=11% Similarity=0.091 Sum_probs=153.7
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
++...+++|+||||||+|+||++++++|++.|.+ |+++.|.... .+.+.+. +.. ...++..
T Consensus 21 ~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~~~---~~~~~~~--------~~~-----~~~~~~~ 81 (270)
T 3ftp_A 21 SMDKTLDKQVAIVTGASRGIGRAIALELARRGAM---VIGTATTEAG---AEGIGAA--------FKQ-----AGLEGRG 81 (270)
T ss_dssp --CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSHHH---HHHHHHH--------HHH-----HTCCCEE
T ss_pred ccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHH--------HHh-----cCCcEEE
Confidence 3444578999999999999999999999999875 8888886321 1222111 111 2246788
Q ss_pred EeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC
Q psy6053 175 ISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH 237 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~ 237 (614)
+.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+
T Consensus 82 ~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~ 155 (270)
T 3ftp_A 82 AVLNVNDAT------AVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR 155 (270)
T ss_dssp EECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 999999865 6666665 68999999996432 3567788999999999999987531 24
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+..... ....|+.||+..+.+.+..+.
T Consensus 156 ~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~ 197 (270)
T 3ftp_A 156 GGRIVNITSVVGSAGNP--------------------------------------GQVNYAAAKAGVAGMTRALAREIGS 197 (270)
T ss_dssp CEEEEEECCHHHHHCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCEEEEECchhhCCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999986532210 015799999988777766544
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+|+++.+++||.|..+.... . +......... ......+...+|+|++++.++..... -..
T Consensus 198 ~gI~vn~v~PG~v~T~~~~~-------~--~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~--~it 257 (270)
T 3ftp_A 198 RGITVNCVAPGFIDTDMTKG-------L--PQEQQTALKT---------QIPLGRLGSPEDIAHAVAFLASPQAG--YIT 257 (270)
T ss_dssp GTEEEEEEEECSBCSHHHHH-------S--CHHHHHHHHT---------TCTTCSCBCHHHHHHHHHHHHSGGGT--TCC
T ss_pred hCeEEEEEEeCCCcCcchhh-------c--CHHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHhCCCcC--Ccc
Confidence 58999999999886543211 0 0111111111 11223467899999999988854332 136
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.++
T Consensus 258 G~~i~vdGG 266 (270)
T 3ftp_A 258 GTTLHVNGG 266 (270)
T ss_dssp SCEEEESTT
T ss_pred CcEEEECCC
Confidence 889999877
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=163.98 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=151.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||++++++|++.|++ |+++.|+. +++++..+ .++. ...++.++.+|+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~-----~~~~~~~~~~D~ 79 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGAR---VYTCSRNE------KELDECLE-----IWRE-----KGLNVEGSVCDL 79 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHh-----cCCceEEEECCC
Confidence 56899999999999999999999999875 88888863 22222211 1111 224688999999
Q ss_pred CCCCCCCCHHHHHHHh--------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLA--------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~--------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.++ .++|++||+||.... .+.++..+++|+.|+.++++++... .+..++
T Consensus 80 ~~~~------~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~i 153 (273)
T 1ae1_A 80 LSRT------ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNV 153 (273)
T ss_dssp TCHH------HHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 666665 578999999997532 3567788999999999999988421 255799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+..+. .|++
T Consensus 154 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 195 (273)
T 1ae1_A 154 IFLSSIAGFSALP--------------------------------------SVSLYSASKGAINQMTKSLACEWAKDNIR 195 (273)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcCHhhcCCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 9999987643210 015799999999988877654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+++++||.|.++...... ................. + ...+...+|+|++++.++..... ...++++
T Consensus 196 v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~~~~~~-------p--~~r~~~p~dvA~~v~~l~s~~~~--~~tG~~i 261 (273)
T 1ae1_A 196 VNSVAPGVILTPLVETAI---KKNPHQKEEIDNFIVKT-------P--MGRAGKPQEVSALIAFLCFPAAS--YITGQII 261 (273)
T ss_dssp EEEEEECSBC----------------CHHHHHHHHHHS-------T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeCCCcCchhhhhh---hcccCcHHHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHhCcccc--CcCCCEE
Confidence 999999999876432110 00000011111111110 0 11367899999999988754331 1367899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 262 ~vdGG 266 (273)
T 1ae1_A 262 WADGG 266 (273)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 98877
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=164.28 Aligned_cols=221 Identities=16% Similarity=0.201 Sum_probs=149.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|... +++++..+ .++. ...++.++.+|+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~---V~~~~r~~~-----~~~~~~~~-----~~~~-----~~~~~~~~~~D~ 63 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGAN---VVVNYAGNE-----QKANEVVD-----EIKK-----LGSDAIAVRADV 63 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCH-----HHHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCCH-----HHHHHHHH-----HHHh-----cCCcEEEEEcCC
Confidence 46799999999999999999999999876 888888421 22222111 1111 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++.+.+... .+..++|
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 137 (246)
T 2uvd_A 64 ANAE------DVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIV 137 (246)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 6766665 69999999996532 3567788999999977776655421 2568999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..+.+.+..+. .|+++
T Consensus 138 ~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 179 (246)
T 2uvd_A 138 NIASVVGVTGN----------P----------------------------GQANYVAAKAGVIGLTKTSAKELASRNITV 179 (246)
T ss_dssp EECCTHHHHCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHhcCCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 99998653211 0 015799999988887765543 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++++||.|.++.....+ . .......... ....+++.+|+|++++.++..... -..+++++
T Consensus 180 ~~v~Pg~v~t~~~~~~~-------~--~~~~~~~~~~---------p~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~~~ 239 (246)
T 2uvd_A 180 NAIAPGFIATDMTDVLD-------E--NIKAEMLKLI---------PAAQFGEAQDIANAVTFFASDQSK--YITGQTLN 239 (246)
T ss_dssp EEEEECSBGGGCSSCCC-------T--THHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEeccccCcchhhcC-------H--HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhc--CCCCCEEE
Confidence 99999999766432110 0 0111111110 012378999999999988854331 13578888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 240 vdgG 243 (246)
T 2uvd_A 240 VDGG 243 (246)
T ss_dssp ESTT
T ss_pred ECcC
Confidence 8776
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=162.56 Aligned_cols=225 Identities=13% Similarity=0.122 Sum_probs=152.2
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||+|+||++++++|++.|.+ |+++.|.. +++++..+ + ...++.++.+|
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D 83 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCH---VLCADIDG------DAADAAAT---------K----IGCGAAACRVD 83 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCE---EEEEESSH------HHHHHHHH---------H----HCSSCEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----cCCcceEEEec
Confidence 367899999999999999999999999875 88888863 22322211 0 22468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++
T Consensus 84 v~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~I 157 (277)
T 3gvc_A 84 VSDEQ------QIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAI 157 (277)
T ss_dssp TTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEE
Confidence 99876 6666554 68999999997532 3567788999999999998887542 345689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+..+. +|++
T Consensus 158 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~ 199 (277)
T 3gvc_A 158 VNLSSLAGQVAVG--------------------------------------GTGAYGMSKAGIIQLSRITAAELRSSGIR 199 (277)
T ss_dssp EEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986532210 015799999999988876543 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+.+++||.|.++....... ...+ . .......... ......+..++|+|++++.++..... -..++++
T Consensus 200 vn~v~PG~v~t~~~~~~~~---~~~~--~----~~~~~~~~~~--~~~~~r~~~pedvA~~v~~L~s~~a~--~itG~~i 266 (277)
T 3gvc_A 200 SNTLLPAFVDTPMQQTAMA---MFDG--A----LGAGGARSMI--ARLQGRMAAPEEMAGIVVFLLSDDAS--MITGTTQ 266 (277)
T ss_dssp EEEEEECSBCCHHHHHHHT---CC------------CCHHHHH--HHHHSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCCccCchHHHhhh---cchh--h----HHHHhhhhhh--hccccCCCCHHHHHHHHHHHcCCccC--CccCcEE
Confidence 9999999997653210000 0000 0 0000000000 00112467899999999998865432 1368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.+|
T Consensus 267 ~vdGG 271 (277)
T 3gvc_A 267 IADGG 271 (277)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 99887
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=160.59 Aligned_cols=223 Identities=9% Similarity=0.044 Sum_probs=156.8
Q ss_pred cCCcEEEEeccccc--ccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASGF--LGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTGF--lG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+|+||||+|+ ||++++++|++.|.+ |+++.|..+. .+.++++.+. . ...++.++.+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~---V~~~~r~~~~---~~~~~~~~~~---------~---~~~~~~~~~~ 66 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGAR---LIFTYAGERL---EKSVHELAGT---------L---DRNDSIILPC 66 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCE---EEEEESSGGG---HHHHHHHHHT---------S---SSCCCEEEEC
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE---EEEecCchHH---HHHHHHHHHh---------c---CCCCceEEeC
Confidence 56899999999999 999999999999876 8888887432 3334433221 1 1137899999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccC-----------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIR-----------FDEALKKAVLLNTRGTKMMLSLAKEM-KHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-----------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~ 238 (614)
|+++++ +++.+++ .+|++||+||... -.+.+...+++|+.|+.++++.+... .+-
T Consensus 67 D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 140 (266)
T 3oig_A 67 DVTNDA------EIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEG 140 (266)
T ss_dssp CCSSSH------HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC
T ss_pred CCCCHH------HHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCC
Confidence 999976 6666654 6899999999653 13456778999999999999998763 223
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. .
T Consensus 141 g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~ 182 (266)
T 3oig_A 141 GSIVTLTYLGGELVM----------P----------------------------NYNVMGVAKASLDASVKYLAADLGKE 182 (266)
T ss_dssp EEEEEEECGGGTSCC----------T----------------------------TTHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ceEEEEecccccccC----------C----------------------------CcchhHHHHHHHHHHHHHHHHHHhhc
Confidence 589999998654221 0 015799999999988877654 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++..++||.|..+..... .............. ....+...+|+|++++.++..... ...+
T Consensus 183 gi~v~~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~p~dva~~v~~l~s~~~~--~~tG 244 (266)
T 3oig_A 183 NIRVNSISAGPIRTLSAKGI-------SDFNSILKDIEERA---------PLRRTTTPEEVGDTAAFLFSDMSR--GITG 244 (266)
T ss_dssp TEEEEEEEECCCCSGGGTTC-------TTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CcEEEEEecCcccccccccc-------cchHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCCchh--cCcC
Confidence 89999999999977543221 11112222222111 112356889999999998875432 2368
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.+|
T Consensus 245 ~~i~vdGG 252 (266)
T 3oig_A 245 ENLHVDSG 252 (266)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 89999877
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=167.62 Aligned_cols=219 Identities=20% Similarity=0.172 Sum_probs=138.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|++ |++.+|+.. ++++..+ .+.... ...++.++.+|+
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~~---Vv~~~r~~~------~~~~~~~-----~l~~~~---~~~~~~~~~~Dl 68 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCK---VAIADIRQD------SIDKALA-----TLEAEG---SGPEVMGVQLDV 68 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHHT---CGGGEEEEECCT
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCCE---EEEEECCHH------HHHHHHH-----HHHhcC---CCCeEEEEECCC
Confidence 56899999999999999999999999876 888998742 2222211 111111 123789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcC---------
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMK--------- 236 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~--------- 236 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+...-
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~ 142 (319)
T 3ioy_A 69 ASRE------GFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQ 142 (319)
T ss_dssp TCHH------HHHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCC
Confidence 9866 6766665 57999999996421 35677889999999999999887631
Q ss_pred CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHH----HHHHHHHHHh
Q psy6053 237 HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKC----LSEGLVVEAM 312 (614)
Q Consensus 237 ~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~----~aE~lv~~~~ 312 (614)
+-.++|++||..+..... ....|+.||+ ++|.+..++.
T Consensus 143 ~~g~iV~isS~a~~~~~~--------------------------------------~~~~Y~aSKaal~~~~~~la~e~~ 184 (319)
T 3ioy_A 143 KGGHVVNTASMAAFLAAG--------------------------------------SPGIYNTTKFAVRGLSESLHYSLL 184 (319)
T ss_dssp CCCEEEEECCGGGTCCCS--------------------------------------SSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCcEEEEecccccccCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 234699999987643210 1257999999 5666655555
Q ss_pred hCCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeC-CCccccceeHHHHHHHHHHHHHhh
Q psy6053 313 NNGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCD-NTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 313 ~~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~-~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
..|+.+++++||.|.++...+.. ..+ ..+.............. .......++++++|++++.++...
T Consensus 185 ~~gi~v~~v~PG~v~T~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~ 252 (319)
T 3ioy_A 185 KYEIGVSVLCPGLVKSYIYASDD------IRP-DALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARVIEAMKAN 252 (319)
T ss_dssp GGTCEEEEECCCCBC------------------------------------CCGGGSSBCHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEEcCeEccCcccccc------cCc-hhhcccccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcC
Confidence 56999999999999765432110 000 00000000000000011 111112279999999999998653
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-18 Score=170.78 Aligned_cols=235 Identities=17% Similarity=0.190 Sum_probs=152.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+... .+.+.+. +.... ...++.++.+|+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~---~~~~~~~--------l~~~~---~~~~~~~~~~D~ 67 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAK---VALVDWNLEA---GVQCKAA--------LHEQF---EPQKTLFIQCDV 67 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHHH---HHHHHHH--------HTTTS---CGGGEEEEECCT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCE---EEEEECCHHH---HHHHHHH--------HHhhc---CCCceEEEecCC
Confidence 56889999999999999999999999876 8888886321 1111111 11110 124688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHH----HHHcC--CCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSL----AKEMK--HLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~l----a~~~~--~~k~~V~vST 246 (614)
++++ +++.+++ ++|++||+||... .+.++..+++|+.|+..+.+. +++.+ +..++|++||
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS 140 (267)
T 2gdz_A 68 ADQQ------QLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 140 (267)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence 9865 6666665 4799999999764 345677889999976655544 43321 1578999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHH------hhCCCCEEE
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEA------MNNGMPCLM 320 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~------~~~glp~~I 320 (614)
..+..... ....|+.||+..|.+.+.. ...|+++++
T Consensus 141 ~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~ 182 (267)
T 2gdz_A 141 LAGLMPVA--------------------------------------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNA 182 (267)
T ss_dssp GGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ccccCCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEE
Confidence 97643210 0147999999999988763 126899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.|.++.... ...... .... ......+ ..+.....+++++|+|++++.++.... ..++++++.
T Consensus 183 v~Pg~v~t~~~~~-------~~~~~~-~~~~-~~~~~~~-~~~~~~~~~~~~~dvA~~v~~l~s~~~----~~G~~~~v~ 248 (267)
T 2gdz_A 183 ICPGFVNTAILES-------IEKEEN-MGQY-IEYKDHI-KDMIKYYGILDPPLIANGLITLIEDDA----LNGAIMKIT 248 (267)
T ss_dssp EEESCBSSHHHHG-------GGCHHH-HGGG-GGGHHHH-HHHHHHHCCBCHHHHHHHHHHHHHCTT----CSSCEEEEE
T ss_pred EecCcCcchhhhc-------cccccc-cchh-hhHHHHH-HHHhccccCCCHHHHHHHHHHHhcCcC----CCCcEEEec
Confidence 9999986653110 000000 0000 0000000 000012346799999999999887653 378899999
Q ss_pred cCCcccccHHHH
Q psy6053 401 SSQEWQVSWQEI 412 (614)
Q Consensus 401 ~~~~~~it~~e~ 412 (614)
++ +++++.|+
T Consensus 249 gg--~~~~~~~~ 258 (267)
T 2gdz_A 249 TS--KGIHFQDY 258 (267)
T ss_dssp TT--TEEEECCC
T ss_pred CC--CcccccCc
Confidence 88 67776654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=160.41 Aligned_cols=229 Identities=14% Similarity=0.100 Sum_probs=150.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|+.. ++++..+ .+....+ ..++.++.+|+
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~~~~---~~~~~~~~~D~ 73 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGAK---LSLVDVSSE------GLEASKA-----AVLETAP---DAEVLTTVADV 73 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHHCT---TCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHhhcC---CceEEEEEccC
Confidence 57899999999999999999999999875 888888642 2222111 1111111 25788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLA----KEMKHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~ 240 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+ ++ .+..+
T Consensus 74 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~ 146 (267)
T 1iy8_A 74 SDEA------QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMRE-QGSGM 146 (267)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCCE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCCE
Confidence 9865 6666665 68999999996532 2567788999999988766554 33 25679
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..+.+.+..+. .|+
T Consensus 147 iv~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi 188 (267)
T 1iy8_A 147 VVNTASVGGIRGIG--------------------------------------NQSGYAAAKHGVVGLTRNSAVEYGRYGI 188 (267)
T ss_dssp EEEECCGGGTSBCS--------------------------------------SBHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEEcchhhccCCC--------------------------------------CCccHHHHHHHHHHHHHHHHHHHHhcCe
Confidence 99999986532210 015799999999988876554 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++++++||.|.++...... .................. .....+...+|+|++++.++..... -..+.+
T Consensus 189 ~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~---------~p~~r~~~~~dvA~~v~~l~s~~~~--~~tG~~ 256 (267)
T 1iy8_A 189 RINAIAPGAIWTPMVENSM-KQLDPENPRKAAEEFIQV---------NPSKRYGEAPEIAAVVAFLLSDDAS--YVNATV 256 (267)
T ss_dssp EEEEEEECSBCSHHHHHHH-HHHCTTCHHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHTSGGGT--TCCSCE
T ss_pred EEEEEEeCCCcCcchhccc-cccChhhhhhHHHHHhcc---------CCCCCCcCHHHHHHHHHHHcCcccc--CCCCCE
Confidence 9999999998765311000 000000000000011111 0112367899999999988754421 136788
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 257 i~vdGG 262 (267)
T 1iy8_A 257 VPIDGG 262 (267)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 988877
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-17 Score=161.54 Aligned_cols=213 Identities=13% Similarity=0.059 Sum_probs=143.8
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
+....+++|+|+||||||+||++++++|++.|.+ |+++.|+. +.+++ . .++.+
T Consensus 12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~---V~~~~r~~------~~~~~-----------------~-~~~~~ 64 (249)
T 1o5i_A 12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAE---VTICARNE------ELLKR-----------------S-GHRYV 64 (249)
T ss_dssp ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHH-----------------T-CSEEE
T ss_pred hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEcCCH------HHHHh-----------------h-CCeEE
Confidence 4455678999999999999999999999999875 88888864 11211 1 24667
Q ss_pred EeCCCCCCCCCCCHHHHHHHh---ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHH----HHHcCCCce
Q psy6053 175 ISGDAEADELAIKESDRQLLA---SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSL----AKEMKHLEL 240 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~---~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~l----a~~~~~~k~ 240 (614)
+ +|+ . + +.+.++ .++|+|||+||.... .+.++..+++|+.|+.++.+. +++ .+..+
T Consensus 65 ~-~D~-~-~------~~~~~~~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~ 134 (249)
T 1o5i_A 65 V-CDL-R-K------DLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKE-KGWGR 134 (249)
T ss_dssp E-CCT-T-T------CHHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEE
T ss_pred E-eeH-H-H------HHHHHHHHhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCcE
Confidence 7 999 2 2 344443 379999999996432 355778899999997766544 444 35689
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..+.+.+..+. .|+
T Consensus 135 iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi 176 (249)
T 1o5i_A 135 IVAITSFSVISPIE--------------------------------------NLYTSNSARMALTGFLKTLSFEVAPYGI 176 (249)
T ss_dssp EEEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEcchHhcCCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCe
Confidence 99999997643210 015799999999988876554 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHH-HHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLI-GAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~-~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++++|||.|.++.... + . + .... ..... .....+.+++|+|++++.++..... ...++
T Consensus 177 ~v~~v~Pg~v~t~~~~~---~----~-~-~~~~~~~~~~---------~p~~~~~~~~dvA~~i~~l~s~~~~--~~tG~ 236 (249)
T 1o5i_A 177 TVNCVAPGWTETERVKE---L----L-S-EEKKKQVESQ---------IPMRRMAKPEEIASVVAFLCSEKAS--YLTGQ 236 (249)
T ss_dssp EEEEEEECSBCCTTHHH---H----S-C-HHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEEEeeCCCccCcccc---c----c-h-hhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc--CCCCC
Confidence 99999999997753210 0 0 0 1111 11111 1113477999999999988865432 13578
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 237 ~~~vdgG 243 (249)
T 1o5i_A 237 TIVVDGG 243 (249)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999877
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=161.75 Aligned_cols=213 Identities=15% Similarity=0.135 Sum_probs=147.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|++|||||||+||++++++|++.|.+ |+++.|... + ..+. ...++.++.+|+
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~-----~-~~~~----------------~~~~~~~~~~D~ 61 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQ---VVVLDIRGE-----D-VVAD----------------LGDRARFAAADV 61 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTCE---EEEEESSCH-----H-HHHH----------------TCTTEEEEECCT
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCchH-----H-HHHh----------------cCCceEEEECCC
Confidence 56899999999999999999999999976 888888421 1 1111 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-------
Q psy6053 180 EADELAIKESDRQLLAS------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM------- 235 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~------- 235 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++...
T Consensus 62 ~~~~------~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~ 135 (257)
T 3tl3_A 62 TDEA------AVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPV 135 (257)
T ss_dssp TCHH------HHHHHHHHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhccc
Confidence 9876 6666665 79999999996431 3456788999999999999988762
Q ss_pred ----CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHH
Q psy6053 236 ----KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEA 311 (614)
Q Consensus 236 ----~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~ 311 (614)
.+-.++|++||..+..... + ...|+.||+..+.+.+..
T Consensus 136 ~~~~~~~g~iv~isS~~~~~~~~--------------------------------~------~~~Y~asKaa~~~~~~~l 177 (257)
T 3tl3_A 136 GPNAEERGVIINTASVAAFDGQI--------------------------------G------QAAYSASKGGVVGMTLPI 177 (257)
T ss_dssp --CCCCSEEEEEECCCC--CCHH--------------------------------H------HHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcchhhcCCCC--------------------------------C------CccHHHHHHHHHHHHHHH
Confidence 1234799999987642210 0 147999999888777665
Q ss_pred hh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 312 MN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 312 ~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+. +|+.+..++||.|..+.... . +............ ....+...+|+|++++.++....
T Consensus 178 a~e~~~~gI~vn~v~PG~v~T~~~~~-------~--~~~~~~~~~~~~~--------~~~r~~~p~dva~~v~~l~s~~~ 240 (257)
T 3tl3_A 178 ARDLASHRIRVMTIAPGLFDTPLLAS-------L--PEEARASLGKQVP--------HPSRLGNPDEYGALAVHIIENPM 240 (257)
T ss_dssp HHHHGGGTEEEEEEEECSBCCTTC------------CHHHHHHHHHTSS--------SSCSCBCHHHHHHHHHHHHHCTT
T ss_pred HHHhcccCcEEEEEEecCccChhhhh-------c--cHHHHHHHHhcCC--------CCCCccCHHHHHHHHHHHhcCCC
Confidence 44 58999999999986653221 1 1111122222110 11246788999999999987633
Q ss_pred hcCCCCccEEEeccC
Q psy6053 388 SQKEHRQSIVHLTSS 402 (614)
Q Consensus 388 ~~~~~~~~vyni~~~ 402 (614)
..++++++.++
T Consensus 241 ----itG~~i~vdGG 251 (257)
T 3tl3_A 241 ----LNGEVIRLDGA 251 (257)
T ss_dssp ----CCSCEEEESTT
T ss_pred ----CCCCEEEECCC
Confidence 37889999887
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=164.24 Aligned_cols=215 Identities=15% Similarity=0.138 Sum_probs=150.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|.+ |++..|..... .....+.+|+
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G~~---V~~~~r~~~~~---------------------------~~~~~~~~Dv 75 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAGAR---VAVADRAVAGI---------------------------AADLHLPGDL 75 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEECSSCCTTS---------------------------CCSEECCCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCHHHH---------------------------HhhhccCcCC
Confidence 57899999999999999999999999875 88888865431 1124458899
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~ 241 (614)
++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+.++++++ ++ .+..++
T Consensus 76 ~~~~------~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~i 148 (266)
T 3uxy_A 76 REAA------YADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAA-AGGGAI 148 (266)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEE
Confidence 9865 5554443 68999999997542 3567788999999999999988 34 256799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+.+..+. +|++
T Consensus 149 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~ 190 (266)
T 3uxy_A 149 VNVASCWGLRPGP--------------------------------------GHALYCLTKAALASLTQCMGMDHAPQGIR 190 (266)
T ss_dssp EEECCSBTTBCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECCHHhCCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 9999987643210 015799999999988877654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+.+++||.|.++..... +......+......... ......+..++|+|++++.++..... -..++++
T Consensus 191 vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~i 257 (266)
T 3uxy_A 191 INAVCPNEVNTPMLRTG--FAKRGFDPDRAVAELGR---------TVPLGRIAEPEDIADVVLFLASDAAR--YLCGSLV 257 (266)
T ss_dssp EEEEEESSBCCHHHHHH--HHHTTCCHHHHHHHHHT---------TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCCCcchHhhhh--hhcccccchHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCchhc--CCcCCEE
Confidence 99999999876532100 00000011111112221 12234567899999999988865432 1368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 258 ~vdGG 262 (266)
T 3uxy_A 258 EVNGG 262 (266)
T ss_dssp EESTT
T ss_pred EECcC
Confidence 99887
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=159.65 Aligned_cols=217 Identities=13% Similarity=0.098 Sum_probs=152.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |++..|+. +++++..+ + ...++..+.+|+
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~Dv 64 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERGAK---VIGTATSE------SGAQAISD---------Y----LGDNGKGMALNV 64 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESSH------HHHHHHHH---------H----HGGGEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----hcccceEEEEeC
Confidence 56899999999999999999999999876 88888863 22222211 0 123577899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 65 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv 138 (248)
T 3op4_A 65 TNPE------SIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRII 138 (248)
T ss_dssp TCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9876 6776665 78999999997532 3567788999999999999887541 2457899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 139 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v 180 (248)
T 3op4_A 139 NVGSVVGTMGNA--------------------------------------GQANYAAAKAGVIGFTKSMAREVASRGVTV 180 (248)
T ss_dssp EECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHHHHhCeEE
Confidence 999986532210 015799999977777766544 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|..+..... .+ ........+ .....+..++|+|++++.++..... -..+++++
T Consensus 181 n~v~PG~v~T~~~~~~--------~~-~~~~~~~~~---------~p~~r~~~p~dva~~v~~L~s~~~~--~itG~~i~ 240 (248)
T 3op4_A 181 NTVAPGFIETDMTKAL--------ND-EQRTATLAQ---------VPAGRLGDPREIASAVAFLASPEAA--YITGETLH 240 (248)
T ss_dssp EEEEECSBSSTTTTTS--------CH-HHHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCCCCCchhhhc--------CH-HHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCCccC--CccCcEEE
Confidence 9999998865533211 11 111111111 1123467899999999988865432 13688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 241 vdgG 244 (248)
T 3op4_A 241 VNGG 244 (248)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9876
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=164.30 Aligned_cols=221 Identities=16% Similarity=0.129 Sum_probs=154.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|+.... +.+.+.+ . . ...++.++.+|+
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~~~~---~~~~~~~--------~----~-~~~~~~~~~~Dl 90 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGAQ---VAVAARHSDAL---QVVADEI--------A----G-VGGKALPIRCDV 90 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESSGGGG---HHHHHHH--------H----H-TTCCCEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCHHHH---HHHHHHH--------H----h-cCCeEEEEEcCC
Confidence 57899999999999999999999999875 88899965321 2222111 1 1 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... +.-.++
T Consensus 91 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~i 164 (276)
T 3r1i_A 91 TQPD------QVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTI 164 (276)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 9976 6777665 78999999997542 3567788999999999999887652 113679
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... +.+ ...|+.||+..+.+.+..+. +|++
T Consensus 165 v~isS~~~~~~~~-------~~~-----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gIr 208 (276)
T 3r1i_A 165 ITTASMSGHIINI-------PQQ-----------------------------VSHYCTSKAAVVHLTKAMAVELAPHQIR 208 (276)
T ss_dssp EEECCGGGTSCCC-------SSC-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECchHhcccCC-------CCC-----------------------------cchHHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 9999986542210 000 14799999999988877654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|..+...+.+. ......... ....+...+|+|++++.++..... -..++++
T Consensus 209 vn~v~PG~v~T~~~~~~~~----------~~~~~~~~~---------p~~r~~~pedvA~~v~fL~s~~~~--~itG~~i 267 (276)
T 3r1i_A 209 VNSVSPGYIRTELVEPLAD----------YHALWEPKI---------PLGRMGRPEELTGLYLYLASAASS--YMTGSDI 267 (276)
T ss_dssp EEEEEECCBCSTTTGGGGG----------GHHHHGGGS---------TTSSCBCGGGSHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCCCcCCccccchH----------HHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcccc--CccCcEE
Confidence 9999999997654322110 111111111 112356789999999988865432 2368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 268 ~vdGG 272 (276)
T 3r1i_A 268 VIDGG 272 (276)
T ss_dssp EESTT
T ss_pred EECcC
Confidence 98876
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=164.70 Aligned_cols=222 Identities=13% Similarity=0.111 Sum_probs=152.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|+. ++++++. + . .++.++.+|+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~-------------~-~-~~~~~~~~D~ 59 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAK---VIATDINE------SKLQELE-------------K-Y-PGIQTRVLDV 59 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHGGGG-------------G-S-TTEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHH-------------h-c-cCceEEEeeC
Confidence 56899999999999999999999999865 88888863 2222110 0 1 2688999999
Q ss_pred CCCCCCCCHHHHHHHh---ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLA---SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~---~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST 246 (614)
++++ +++++. .++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++||
T Consensus 60 ~~~~------~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS 133 (246)
T 2ag5_A 60 TKKK------QIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSS 133 (246)
T ss_dssp TCHH------HHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCHH------HHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 9865 555554 478999999997542 3567788999999999999887531 25679999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+..... . ....|+.||+..|.+.+..+. .|++++++|
T Consensus 134 ~~~~~~~~--------~-----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 176 (246)
T 2ag5_A 134 VASSVKGV--------V-----------------------------NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVC 176 (246)
T ss_dssp SBTTTBCC--------T-----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hHhCcCCC--------C-----------------------------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEe
Confidence 86532210 0 015799999999998887654 489999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
||.|.++.... +......+........... ....+...+|+|++++.++..... -..++++++.++
T Consensus 177 Pg~v~t~~~~~---~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~dvA~~v~~l~s~~~~--~~tG~~i~vdgG 242 (246)
T 2ag5_A 177 PGTVDTPSLQE---RIQARGNPEEARNDFLKRQ---------KTGRFATAEEIAMLCVYLASDESA--YVTGNPVIIDGG 242 (246)
T ss_dssp ESCEECHHHHH---HHHHSSSHHHHHHHHHHTC---------TTSSCEEHHHHHHHHHHHHSGGGT--TCCSCEEEECTT
T ss_pred eCcCcCcchhh---hhhcccCcHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCcccc--CCCCCEEEECCC
Confidence 99998763210 0000000111111111110 112367899999999998865432 135788888776
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-17 Score=165.81 Aligned_cols=220 Identities=12% Similarity=0.085 Sum_probs=154.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|..... +.+.+.+ +.. ...++.++.+|+
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G~~---V~~~~r~~~~~---~~~~~~l--------~~~----~~~~~~~~~~Dv 100 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAGAN---VAVAARSPREL---SSVTAEL--------GEL----GAGNVIGVRLDV 100 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSGGGG---HHHHHHH--------TTS----SSSCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCHHHH---HHHHHHH--------Hhh----CCCcEEEEEEeC
Confidence 57899999999999999999999999875 88888875432 1111111 100 125789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHH----HcCCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAK----EMKHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+. + .+..++
T Consensus 101 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~i 173 (293)
T 3rih_A 101 SDPG------SCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTA-SGRGRV 173 (293)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHH-HSSCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCEE
Confidence 9875 6666554 57999999997532 35677889999999999999884 3 356799
Q ss_pred EEEeCceec-cCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 242 VHISTAYCH-LQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 242 V~vST~~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
|++||..+. ... | ....|+.||+..+.+.+..+. +|+
T Consensus 174 V~isS~~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI 215 (293)
T 3rih_A 174 ILTSSITGPVTGY----------P----------------------------GWSHYGASKAAQLGFMRTAAIELAPRGV 215 (293)
T ss_dssp EEECCSBTTTBBC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEeChhhccCCC----------C----------------------------CCHHHHHHHHHHHHHHHHHHHHHhhhCe
Confidence 999998652 110 0 015799999999988876654 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++..++||.|.++.... .. ............ ..-+...+|+|++++.++..... -..+++
T Consensus 216 ~vn~v~PG~v~t~~~~~--------~~-~~~~~~~~~~~p---------~~r~~~p~dvA~~v~fL~s~~a~--~itG~~ 275 (293)
T 3rih_A 216 TVNAILPGNILTEGLVD--------MG-EEYISGMARSIP---------MGMLGSPVDIGHLAAFLATDEAG--YITGQA 275 (293)
T ss_dssp EEEEEEECSBCCHHHHH--------TC-HHHHHHHHTTST---------TSSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEecCCCcCcchhh--------cc-HHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCcccc--CCCCCE
Confidence 99999999998763210 01 122222222211 11245689999999988865432 136889
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 276 i~vdGG 281 (293)
T 3rih_A 276 IVVDGG 281 (293)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=162.09 Aligned_cols=225 Identities=11% Similarity=0.063 Sum_probs=149.9
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
.....++|+||||||+|+||++++++|++.|.+ |+++.|..... ..+.++++.. ...++.++
T Consensus 7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~---v~~~~~~~~~~-~~~~~~~~~~--------------~~~~~~~~ 68 (256)
T 3ezl_A 7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFR---VVAGCGPNSPR-RVKWLEDQKA--------------LGFDFYAS 68 (256)
T ss_dssp ------CEEEEETTTTSHHHHHHHHHHHHTTEE---EEEEECTTCSS-HHHHHHHHHH--------------TTCCCEEE
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCCHHH-HHHHHHHHHh--------------cCCeeEEE
Confidence 344567899999999999999999999999865 77777433222 2222222211 33578899
Q ss_pred eCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCC
Q psy6053 176 SGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHL 238 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~ 238 (614)
.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+.
T Consensus 69 ~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~ 142 (256)
T 3ezl_A 69 EGNVGDWD------STKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGW 142 (256)
T ss_dssp ECCTTCHH------HHHHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence 99999865 6666655 68999999997532 3567788999999988887766331 255
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+..... ....|+.||+..+.+.+..+. +
T Consensus 143 g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~ 184 (256)
T 3ezl_A 143 GRIINISSVNGQKGQF--------------------------------------GQTNYSTAKAGIHGFTMSLAQEVATK 184 (256)
T ss_dssp EEEEEECCCCGGGSCS--------------------------------------CCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEcchhhccCCC--------------------------------------CCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999986543210 015799999988877766554 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++.+++||.|.++.... . . ......+.... ....+...+|+|++++.++..... ...+
T Consensus 185 gi~v~~v~PG~v~t~~~~~-------~-~-~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~s~~~~--~~tG 244 (256)
T 3ezl_A 185 GVTVNTVSPGYIGTDMVKA-------I-R-PDVLEKIVATI---------PVRRLGSPDEIGSIVAWLASEESG--FSTG 244 (256)
T ss_dssp TEEEEEEEECSBCCHHHHT-------S-C-HHHHHHHHHHS---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CCEEEEEEECcccCccccc-------c-C-HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCCccc--CCcC
Confidence 8999999999886653211 0 1 11222222211 112366889999999988854432 2368
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.++
T Consensus 245 ~~i~vdgG 252 (256)
T 3ezl_A 245 ADFSLNGG 252 (256)
T ss_dssp CEEEESTT
T ss_pred cEEEECCC
Confidence 89999877
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=162.53 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=145.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
..++|+++||||+|+||++++++|++.|.+ |+++.|... +++++..+ .+. . ...++.++.+|
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~---V~~~~~~~~-----~~~~~~~~-----~~~----~-~~~~~~~~~~D 87 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFD---IAITGIGDA-----EGVAPVIA-----ELS----G-LGARVIFLRAD 87 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCCH-----HHHHHHHH-----HHH----H-TTCCEEEEECC
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCe---EEEEeCCCH-----HHHHHHHH-----HHH----h-cCCcEEEEEec
Confidence 357899999999999999999999999876 788876432 22222111 111 1 33578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccC---------hhHHHHHHHHHhHHHHHHHHHHHHHc---CC--
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIR---------FDEALKKAVLLNTRGTKMMLSLAKEM---KH-- 237 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~---------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~-- 237 (614)
+++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+... .+
T Consensus 88 v~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~ 161 (280)
T 4da9_A 88 LADLS------SHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDAR 161 (280)
T ss_dssp TTSGG------GHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 99987 6666655 7899999999731 13567788999999999998887652 11
Q ss_pred -CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---
Q psy6053 238 -LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--- 313 (614)
Q Consensus 238 -~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--- 313 (614)
..++|++||..+..... ....|+.||+..+.+.+..+.
T Consensus 162 ~~g~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~ 203 (280)
T 4da9_A 162 ASRSIINITSVSAVMTSP--------------------------------------ERLDYCMSKAGLAAFSQGLALRLA 203 (280)
T ss_dssp CCEEEEEECCC---------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcchhhccCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999986542110 014799999999988877654
Q ss_pred -CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
.|+++..++||.|.++......+ ........+ ......+..++|+|++++.++..... -.
T Consensus 204 ~~gI~vn~v~PG~v~T~~~~~~~~---------~~~~~~~~~--------~~p~~r~~~pedvA~~v~~L~s~~~~--~i 264 (280)
T 4da9_A 204 ETGIAVFEVRPGIIRSDMTAAVSG---------KYDGLIESG--------LVPMRRWGEPEDIGNIVAGLAGGQFG--FA 264 (280)
T ss_dssp TTTEEEEEEEECCBCC---------------------------------------CCBCHHHHHHHHHHHHTSTTG--GG
T ss_pred HhCcEEEEEeecCCcCCchhhcch---------hHHHHHhhc--------CCCcCCcCCHHHHHHHHHHHhCcccc--CC
Confidence 58999999999987654321110 000000000 11123467889999999988865431 12
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.++++++.++
T Consensus 265 tG~~i~vdGG 274 (280)
T 4da9_A 265 TGSVIQADGG 274 (280)
T ss_dssp TTCEEEESTT
T ss_pred CCCEEEECCC
Confidence 6889999877
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=164.86 Aligned_cols=233 Identities=11% Similarity=0.057 Sum_probs=154.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||++++++|++.|++ |+++.|.... ..+.+.+. +.. ...++.++.+|+
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~--~~~~~~~~--------~~~-----~~~~~~~~~~D~ 88 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGCK---VIVNYANSTE--SAEEVVAA--------IKK-----NGSDAACVKANV 88 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHH--------HHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCchH--HHHHHHHH--------HHH-----hCCCeEEEEcCC
Confidence 57899999999999999999999999876 8888886421 11111111 111 234688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 89 ~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 162 (283)
T 1g0o_A 89 GVVE------DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 162 (283)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 9865 5555543 68999999997542 3567788999999999999998873 345799999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... + ....|+.||+..|.+.+..+. .|+++.+
T Consensus 163 sS~~~~~~~~---------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~ 205 (283)
T 1g0o_A 163 GSITGQAKAV---------P----------------------------KHAVYSGSKGAIETFARCMAIDMADKKITVNV 205 (283)
T ss_dssp CCGGGTCSSC---------S----------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred echhhccCCC---------C----------------------------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 9986532110 0 015799999999988877653 5899999
Q ss_pred eecceeecccCCCC-ccccCCCC-chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 321 LRPSIIIPVWREPL-PGWTDNIN-GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 321 vRp~~I~g~~~~p~-~gw~d~~~-g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++||.|.++..... ..+..... ........+..+. ......+...+|+|++++.++..... -..+.+++
T Consensus 206 v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~r~~~p~dvA~~v~~l~s~~~~--~itG~~i~ 276 (283)
T 1g0o_A 206 VAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ-------WSPLRRVGLPIDIARVVCFLASNDGG--WVTGKVIG 276 (283)
T ss_dssp EEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH-------SCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EecCcccchhhhhhhhhccccccccCHHHHHHHHhhc-------CCCCCCCcCHHHHHHHHHHHhCcccc--CcCCCEEE
Confidence 99999977532100 00000000 0011111111100 00112367889999999998865432 13678888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 277 vdgG 280 (283)
T 1g0o_A 277 IDGG 280 (283)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 8776
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-17 Score=161.40 Aligned_cols=221 Identities=11% Similarity=0.133 Sum_probs=153.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||+|+||++++++|++.|.+ |+++.|+. ++++++.+ + ...++.++.+|+
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~Dv 63 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAE---VLLTGRNE------SNIARIRE---------E----FGPRVHALRSDI 63 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HGGGEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----hCCcceEEEccC
Confidence 57899999999999999999999999875 88888863 23333211 1 124689999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+... .+-.++|++
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 64 ADLN------EIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp TCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9876 5665543 6899999999753 23567788999999999999998763 223489999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+..+.+.+..+. +|+++..
T Consensus 138 sS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~ 179 (255)
T 4eso_A 138 SSVADEGGHP--------------------------------------GMSVYSASKAALVSFASVLAAELLPRGIRVNS 179 (255)
T ss_dssp CCGGGSSBCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEE
T ss_pred CChhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEE
Confidence 9987543211 015799999999888877655 5899999
Q ss_pred eecceeecccCCCCccccCCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 321 LRPSIIIPVWREPLPGWTDNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
++||.|.++..... .... ....+...... ......+...+|+|++++.++.. .. -..++++++
T Consensus 180 v~PG~v~T~~~~~~-----~~~~~~~~~~~~~~~~--------~~p~~r~~~pedvA~~v~~L~s~-~~--~itG~~i~v 243 (255)
T 4eso_A 180 VSPGFIDTPTKGVA-----GITEAERAEFKTLGDN--------ITPMKRNGTADEVARAVLFLAFE-AT--FTTGAKLAV 243 (255)
T ss_dssp EEECSBCCSSTTCT-----TSCHHHHHHHHHHHHH--------HSTTSSCBCHHHHHHHHHHHHHT-CT--TCCSCEEEE
T ss_pred EecCcccCcccccc-----cCChhhHHHHHHHHhc--------cCCCCCCcCHHHHHHHHHHHcCc-Cc--CccCCEEEE
Confidence 99999977643210 0011 01111111110 01112356889999999988865 21 236889999
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 244 dGG 246 (255)
T 4eso_A 244 DGG 246 (255)
T ss_dssp STT
T ss_pred CCC
Confidence 888
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=160.61 Aligned_cols=216 Identities=15% Similarity=0.130 Sum_probs=152.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||++++++|++.|++ |+++.|+. +++++..+. ...++.++.+|+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~D~ 61 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGAS---LVAVDREE------RLLAEAVAA-------------LEAEAIAVVADV 61 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHT-------------CCSSEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHHH-------------hcCceEEEEcCC
Confidence 56899999999999999999999999875 88888863 333332211 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... ++..++|++
T Consensus 62 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 135 (263)
T 2a4k_A 62 SDPK------AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT 135 (263)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9865 6666655 47999999997542 3456778999999999999998773 123589999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+. ... . ...|+.||+..+.+.+.... .|+++++
T Consensus 136 sS~~~~-~~~---~-----------------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~ 176 (263)
T 2a4k_A 136 GSVAGL-GAF---G-----------------------------------LAHYAAGKLGVVGLARTLALELARKGVRVNV 176 (263)
T ss_dssp CCCTTC-CHH---H-----------------------------------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEE
T ss_pred ecchhc-CCC---C-----------------------------------cHHHHHHHHHHHHHHHHHHHHhhhhCcEEEE
Confidence 999764 110 0 15799999977777765543 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+|||.|.++.... . .+ .......... ....+...+|+|++++.++..... -..++++++.
T Consensus 177 v~PG~v~t~~~~~-------~-~~-~~~~~~~~~~---------p~~~~~~p~dvA~~v~~l~s~~~~--~~tG~~i~vd 236 (263)
T 2a4k_A 177 LLPGLIQTPMTAG-------L-PP-WAWEQEVGAS---------PLGRAGRPEEVAQAALFLLSEESA--YITGQALYVD 236 (263)
T ss_dssp EEECSBCCGGGTT-------S-CH-HHHHHHHHTS---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred EEeCcCcCchhhh-------c-CH-HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--CCcCCEEEEC
Confidence 9999997764321 1 11 1111111111 012367899999999988865431 1367889888
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 237 gG 238 (263)
T 2a4k_A 237 GG 238 (263)
T ss_dssp TT
T ss_pred CC
Confidence 77
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=161.09 Aligned_cols=226 Identities=16% Similarity=0.135 Sum_probs=154.2
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||+|+||++++++|++.|....+|++..|.. ++++++.+ .+....+ ..++.++.+|
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~------~~~~~~~~-----~l~~~~~---~~~~~~~~~D 95 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL------EKLEELKK-----TIDQEFP---NAKVHVAQLD 95 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH------HHHHHHHH-----HHHHHCT---TCEEEEEECC
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH------HHHHHHHH-----HHHhhCC---CCeEEEEECC
Confidence 36789999999999999999999999987444688888863 22322211 1111111 2578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
+++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+... .+..+
T Consensus 96 v~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~ 169 (287)
T 3rku_A 96 ITQAE------KIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGD 169 (287)
T ss_dssp TTCGG------GHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE
T ss_pred CCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 99987 7777765 5899999999643 24567889999999999999988421 25579
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.... | ....|+.||+..+.+.+..+. .|+
T Consensus 170 IV~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI 211 (287)
T 3rku_A 170 IVNLGSIAGRDAY----------P----------------------------TGSIYCASKFAVGAFTDSLRKELINTKI 211 (287)
T ss_dssp EEEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred EEEECChhhcCCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999998653221 0 015799999999988877655 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++..++||.|..+... ....+............ ..+..+|+|++++.++..... -..+++
T Consensus 212 rvn~v~PG~v~T~~~~------~~~~~~~~~~~~~~~~~------------~p~~pedvA~~v~~l~s~~~~--~i~g~~ 271 (287)
T 3rku_A 212 RVILIAPGLVETEFSL------VRYRGNEEQAKNVYKDT------------TPLMADDVADLIVYATSRKQN--TVIADT 271 (287)
T ss_dssp EEEEEEESCEESSHHH------HHTTTCHHHHHHHHTTS------------CCEEHHHHHHHHHHHHTSCTT--EEEEEE
T ss_pred EEEEEeCCcCcCcccc------ccccCcHHHHHHhhccc------------CCCCHHHHHHHHHHHhCCCCC--eEecce
Confidence 9999999998654210 00001111111111111 123789999999998865432 124677
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 272 i~v~~g 277 (287)
T 3rku_A 272 LIFPTN 277 (287)
T ss_dssp EEEETT
T ss_pred EEeeCC
Confidence 877766
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-17 Score=162.94 Aligned_cols=227 Identities=14% Similarity=0.073 Sum_probs=152.4
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
....+++|+|+||||||+||++++++|++.|++ |+++.|... ++++..+ .+... ...++.++
T Consensus 15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~ 76 (267)
T 1vl8_A 15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCS---VVVASRNLE------EASEAAQ-----KLTEK----YGVETMAF 76 (267)
T ss_dssp --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHH----HCCCEEEE
T ss_pred CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHHh----cCCeEEEE
Confidence 344567899999999999999999999999876 888888632 2222111 11000 12468889
Q ss_pred eCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCC
Q psy6053 176 SGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHL 238 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~ 238 (614)
.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+.
T Consensus 77 ~~Dl~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~ 150 (267)
T 1vl8_A 77 RCDVSNYE------EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN 150 (267)
T ss_dssp ECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS
T ss_pred EcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence 99999865 6666655 68999999997532 2557788999999999998887431 356
Q ss_pred ceEEEEeCce-eccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 239 ELFVHISTAY-CHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 239 k~~V~vST~~-~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
.++|++||.. +.... | ....|+.||+..|.+++..+.
T Consensus 151 g~iv~isS~~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~ 192 (267)
T 1vl8_A 151 PSIINIGSLTVEEVTM----------P----------------------------NISAYAASKGGVASLTKALAKEWGR 192 (267)
T ss_dssp CEEEEECCGGGTCCCS----------S----------------------------SCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cEEEEECCcchhccCC----------C----------------------------CChhHHHHHHHHHHHHHHHHHHhcc
Confidence 7999999986 32110 0 015799999999998877654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
.|+++++++||.|.++... .+.. .+ .......... ....+...+|+|++++.++..... -..
T Consensus 193 ~gi~v~~v~PG~v~T~~~~---~~~~---~~-~~~~~~~~~~---------p~~~~~~p~dvA~~v~~l~s~~~~--~it 254 (267)
T 1vl8_A 193 YGIRVNVIAPGWYRTKMTE---AVFS---DP-EKLDYMLKRI---------PLGRTGVPEDLKGVAVFLASEEAK--YVT 254 (267)
T ss_dssp GTCEEEEEEECCBCSTTTH---HHHT---CH-HHHHHHHHTC---------TTSSCBCGGGGHHHHHHHHSGGGT--TCC
T ss_pred cCeEEEEEEeccCcccccc---cccc---Ch-HHHHHHHhhC---------CCCCCcCHHHHHHHHHHHcCcccc--CCc
Confidence 5899999999988654211 0000 01 1111111110 012367889999999988865431 135
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.++
T Consensus 255 G~~i~vdGG 263 (267)
T 1vl8_A 255 GQIIFVDGG 263 (267)
T ss_dssp SCEEEESTT
T ss_pred CCeEEECCC
Confidence 788888776
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-17 Score=158.61 Aligned_cols=188 Identities=19% Similarity=0.191 Sum_probs=129.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||||+||++++++|++.|++ |+++.|+. ++++++.+ ...++.++.+|+++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~---V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~D~~~ 61 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYR---VGLMARDE------KRLQALAA--------------ELEGALPLPGDVRE 61 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------HSTTCEEEECCTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH--------------HhhhceEEEecCCC
Confidence 578999999999999999999999876 88888863 22332211 11257889999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V~ 243 (614)
++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+ ++ .+.+++|+
T Consensus 62 ~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-~~~~~iv~ 134 (234)
T 2ehd_A 62 EG------DWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLR-RGGGTIVN 134 (234)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCcEEEE
Confidence 65 6665554 68999999996432 3557788999999997666554 44 35789999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... | ....|+.||+..|.+.+.... .|++++
T Consensus 135 isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 176 (234)
T 2ehd_A 135 VGSLAGKNPF----------K----------------------------GGAAYNASKFGLLGLAGAAMLDLREANVRVV 176 (234)
T ss_dssp ECCTTTTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCchhcCCC----------C----------------------------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 9998654321 0 015799999988887765543 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
++|||.|..+... . .+ . . ...+..+|+|++++.++...
T Consensus 177 ~v~Pg~v~t~~~~-------~--~~---------~---~--------~~~~~~~dvA~~~~~l~~~~ 214 (234)
T 2ehd_A 177 NVLPGSVDTGFAG-------N--TP---------G---Q--------AWKLKPEDVAQAVLFALEMP 214 (234)
T ss_dssp EEECC---------------------------------------------CCHHHHHHHHHHHHHSC
T ss_pred EEEeCCCcCCccc-------c--cc---------c---c--------cCCCCHHHHHHHHHHHhCCC
Confidence 9999988553211 0 00 0 0 01468999999999988654
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=166.78 Aligned_cols=230 Identities=16% Similarity=0.132 Sum_probs=156.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+++||||+|+||++++++|++.|.+ |+++.|.... ..+..+++ ... ...++.++.+|
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~---V~~~~r~~~~--~~~~~~~~---------~~~----~~~~~~~~~~D 85 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCH---TVIASRSLPR--VLTAARKL---------AGA----TGRRCLPLSMD 85 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCE---EEEEESCHHH--HHHHHHHH---------HHH----HSSCEEEEECC
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHHH--HHHHHHHH---------HHh----cCCcEEEEEcC
Confidence 467999999999999999999999999875 8888886421 11111111 110 23578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++
T Consensus 86 v~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~i 159 (277)
T 4fc7_A 86 VRAPP------AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVI 159 (277)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEE
Confidence 99875 6666654 68999999995321 3567788999999999999987531 234689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|++
T Consensus 160 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~ 201 (277)
T 4fc7_A 160 VNITATLGNRGQA--------------------------------------LQVHAGSAKAAVDAMTRHLAVEWGPQNIR 201 (277)
T ss_dssp EEECCSHHHHTCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECchhhCCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999986532210 015799999999988876654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|.++... ....+............ ....+...+|+|++++.++..... -..++++
T Consensus 202 vn~v~PG~v~t~~~~------~~~~~~~~~~~~~~~~~---------p~~r~~~p~dvA~~v~fL~s~~~~--~itG~~i 264 (277)
T 4fc7_A 202 VNSLAPGPISGTEGL------RRLGGPQASLSTKVTAS---------PLQRLGNKTEIAHSVLYLASPLAS--YVTGAVL 264 (277)
T ss_dssp EEEEEECCBSSSHHH------HHHSCCHHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEECCEecchhh------hhccCCHHHHHHHhccC---------CCCCCcCHHHHHHHHHHHcCCccC--CcCCCEE
Confidence 999999998764210 00011111222222111 112356789999999998865432 2368899
Q ss_pred EeccCCcccccH
Q psy6053 398 HLTSSQEWQVSW 409 (614)
Q Consensus 398 ni~~~~~~~it~ 409 (614)
++.++ ..+++
T Consensus 265 ~vdGG--~~~~~ 274 (277)
T 4fc7_A 265 VADGG--AWLTF 274 (277)
T ss_dssp EESTT--HHHHC
T ss_pred EECCC--cccCC
Confidence 99887 44443
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=161.26 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=155.8
Q ss_pred ccCCcEEEEeccccc--ccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGASGF--LGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaTGF--lG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.+++|+|+||||||+ ||++++++|++.|.+ |+++.|.. . .+.++++.+ ...++.++.
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~---V~~~~r~~-~---~~~~~~l~~--------------~~~~~~~~~ 81 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAE---LAFTYVGQ-F---KDRVEKLCA--------------EFNPAAVLP 81 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCE---EEEEECTT-C---HHHHHHHHG--------------GGCCSEEEE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCE---EEEeeCch-H---HHHHHHHHH--------------hcCCceEEE
Confidence 367899999999988 999999999999875 88889876 2 334444321 223578999
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------------hHHHHHHHHHhHHHHHHHHHHHHHc--
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF------------DEALKKAVLLNTRGTKMMLSLAKEM-- 235 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~-- 235 (614)
+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+...
T Consensus 82 ~Dl~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~ 155 (280)
T 3nrc_A 82 CDVISDQ------EIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMK 155 (280)
T ss_dssp CCTTCHH------HHHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred eecCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999865 6666654 47999999997532 2456678999999999999988763
Q ss_pred CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--
Q psy6053 236 KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-- 313 (614)
Q Consensus 236 ~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-- 313 (614)
++..++|++||..+.... | ....|+.||+..+.+.+..+.
T Consensus 156 ~~~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~~~~~la~e~ 197 (280)
T 3nrc_A 156 NRNASMVALTYIGAEKAM----------P----------------------------SYNTMGVAKASLEATVRYTALAL 197 (280)
T ss_dssp TTTCEEEEEECGGGTSCC----------T----------------------------TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeccccccCC----------C----------------------------CchhhHHHHHHHHHHHHHHHHHH
Confidence 234689999998654221 0 015799999999988876554
Q ss_pred --CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC
Q psy6053 314 --NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391 (614)
Q Consensus 314 --~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~ 391 (614)
+|+.+..++||.|..+.... ............... ....+...+|+|++++.++..... -
T Consensus 198 ~~~gi~v~~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~~---------p~~~~~~pedvA~~v~~l~s~~~~--~ 259 (280)
T 3nrc_A 198 GEDGIKVNAVSAGPIKTLAASG-------ISNFKKMLDYNAMVS---------PLKKNVDIMEVGNTVAFLCSDMAT--G 259 (280)
T ss_dssp GGGTCEEEEEEECCCCCSGGGG-------CTTHHHHHHHHHHHS---------TTCSCCCHHHHHHHHHHTTSGGGT--T
T ss_pred HHcCcEEEEEeeccccchhhhc-------CcchHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCcccC--C
Confidence 58999999999997654321 111122222221111 112356789999999988765431 1
Q ss_pred CCccEEEeccC
Q psy6053 392 HRQSIVHLTSS 402 (614)
Q Consensus 392 ~~~~vyni~~~ 402 (614)
..+.++++.++
T Consensus 260 ~tG~~i~vdgG 270 (280)
T 3nrc_A 260 ITGEVVHVDAG 270 (280)
T ss_dssp CCSCEEEESTT
T ss_pred cCCcEEEECCC
Confidence 36889999887
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=157.29 Aligned_cols=202 Identities=14% Similarity=0.144 Sum_probs=144.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|+||||||+||++++++|++.|++ |+++.|+.... .....++.+|++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~---V~~~~r~~~~~--------------------------~~~~~~~~~D~~ 52 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYT---VLNIDLSANDQ--------------------------ADSNILVDGNKN 52 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEE---EEEEESSCCTT--------------------------SSEEEECCTTSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEecCcccc--------------------------ccccEEEeCCCC
Confidence 5789999999999999999999999865 88999976431 124567889999
Q ss_pred CCCCCCCHHHHHHHhc---------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEE
Q psy6053 181 ADELAIKESDRQLLAS---------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFV 242 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~---------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V 242 (614)
+++ +++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++.+... .+-.++|
T Consensus 53 ~~~------~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv 126 (236)
T 1ooe_A 53 WTE------QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQ 126 (236)
T ss_dssp HHH------HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEE
Confidence 865 5555543 7999999999532 23556778999999999999998763 1225899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCC
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGM 316 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~gl 316 (614)
++||..+.... | ....|+.||+..+.+.+..+. .|+
T Consensus 127 ~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi 168 (236)
T 1ooe_A 127 LTGAAAAMGPT----------P----------------------------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNS 168 (236)
T ss_dssp EECCGGGGSCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTC
T ss_pred EECchhhccCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHHhcccCCCe
Confidence 99998654211 0 014799999999999887654 259
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++++|||.|.++.. ..... ......++|.+|+|++++..+..+.. ....+..
T Consensus 169 ~v~~v~Pg~v~t~~~-----------------~~~~~---------~~~~~~~~~~~dvA~~i~~~l~s~~~-~~~~G~~ 221 (236)
T 1ooe_A 169 AVLTIMPVTLDTPMN-----------------RKWMP---------NADHSSWTPLSFISEHLLKWTTETSS-RPSSGAL 221 (236)
T ss_dssp EEEEEEESCBCCHHH-----------------HHHST---------TCCGGGCBCHHHHHHHHHHHHHCGGG-CCCTTCE
T ss_pred EEEEEecCcccCcch-----------------hhcCC---------CccccccCCHHHHHHHHHHHHcCCCc-ccccccE
Confidence 999999998855421 01100 01123467889999999866644322 1135778
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 222 ~~v~gg 227 (236)
T 1ooe_A 222 LKITTE 227 (236)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 887765
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-17 Score=163.13 Aligned_cols=219 Identities=11% Similarity=0.047 Sum_probs=150.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+|+|+||||+|+||++++++|++.|.+ |+++.+.... ..++..+++ .. ...++.++.+|+
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G~~---v~i~~~r~~~-~~~~~~~~l---------~~-----~~~~~~~~~~Dl 85 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADGFN---IGVHYHRDAA-GAQETLNAI---------VA-----NGGNGRLLSFDV 85 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHH-HHHHHHHHH---------HH-----TTCCEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCchH-HHHHHHHHH---------Hh-----cCCceEEEEecC
Confidence 56789999999999999999999999876 6665543211 111222222 11 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHH-----HcCCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAK-----EMKHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~-----~~~~~k~ 240 (614)
++++ +++++++ ++|+|||+||... -.+.++..+++|+.|+.++++.+. + .+..+
T Consensus 86 ~~~~------~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~ 158 (267)
T 4iiu_A 86 ANRE------QCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGA-RQGGR 158 (267)
T ss_dssp TCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcE
Confidence 9866 6666655 7899999999753 235677889999999999999874 3 35679
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..+.+.+..+. .|+
T Consensus 159 iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi 200 (267)
T 4iiu_A 159 IITLSSVSGVMGNR--------------------------------------GQVNYSAAKAGIIGATKALAIELAKRKI 200 (267)
T ss_dssp EEEECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEcchHhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCe
Confidence 99999986532210 015799999976666655443 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++.+++||.|.++..... ........... ....+..++|+|++++.++..... ...+++
T Consensus 201 ~v~~v~PG~v~t~~~~~~----------~~~~~~~~~~~---------p~~~~~~~edva~~~~~L~s~~~~--~itG~~ 259 (267)
T 4iiu_A 201 TVNCIAPGLIDTGMIEME----------ESALKEAMSMI---------PMKRMGQAEEVAGLASYLMSDIAG--YVTRQV 259 (267)
T ss_dssp EEEEEEECSBCSTTCCCC----------HHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEEEeeecCCccccc----------HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCCccc--CccCCE
Confidence 999999999976543211 11222222211 112367899999999988865432 236889
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.+|
T Consensus 260 i~vdGG 265 (267)
T 4iiu_A 260 ISINGG 265 (267)
T ss_dssp EEESTT
T ss_pred EEeCCC
Confidence 998776
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-17 Score=161.53 Aligned_cols=226 Identities=12% Similarity=0.081 Sum_probs=149.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||||+||++++++|++.|++ |+++.|+.. ++++..+ .+.. ...++.++.+|+++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~D~~~ 62 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFA---VAIADYNDA------TAKAVAS-----EINQ-----AGGHAVAVKVDVSD 62 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHH-----TTCCEEEEECCTTS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHh-----cCCcEEEEEecCCC
Confidence 589999999999999999999999875 888888632 2222111 1111 22468899999998
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC-CceEEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH-LELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~-~k~~V~ 243 (614)
++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+ ..++|+
T Consensus 63 ~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~ 136 (256)
T 1geg_A 63 RD------QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIIN 136 (256)
T ss_dssp HH------HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 65 6776665 79999999986431 3567788999999999888877642 13 579999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+.... | ....|+.||+..|.+.+..+. .|++++
T Consensus 137 isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 178 (256)
T 1geg_A 137 ACSQAGHVGN----------P----------------------------ELAVYSSSKFAVRGLTQTAARDLAPLGITVN 178 (256)
T ss_dssp ECCGGGTSCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECchhhcCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHHHHcCeEEE
Confidence 9998653211 0 014799999999888877654 589999
Q ss_pred EeecceeecccCCCCcc-ccC--CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 320 MLRPSIIIPVWREPLPG-WTD--NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~g-w~d--~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+++||.|.++....... +.. +.. .......... ......+...+|+|++++.++..... -..+++
T Consensus 179 ~v~PG~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~p~~r~~~p~dvA~~v~~l~s~~~~--~~tG~~ 246 (256)
T 1geg_A 179 GYCPGIVKTPMWAEIDRQVSEAAGKP-LGYGTAEFAK---------RITLGRLSEPEDVAACVSYLASPDSD--YMTGQS 246 (256)
T ss_dssp EEEECSBSSHHHHHHHHHHHHHHTCC-TTHHHHHHHT---------TCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEECCCccchhhhhhhhccccccCC-hHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc--CCCCCE
Confidence 99999986652110000 000 000 0000011111 01112368899999999988865431 136788
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 247 i~vdGG 252 (256)
T 1geg_A 247 LLIDGG 252 (256)
T ss_dssp EEESSS
T ss_pred EEeCCC
Confidence 888776
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=163.87 Aligned_cols=231 Identities=11% Similarity=0.055 Sum_probs=152.4
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
...++|++|||||+|+||++++++|++.|.+ |+++.|+. +++++..+ .++. ...++.++.+
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~-----~l~~-----~~~~~~~~~~ 80 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIA---VYGCARDA------KNVSAAVD-----GLRA-----AGHDVDGSSC 80 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHT-----TTCCEEEEEC
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHh-----cCCcEEEEEC
Confidence 3457899999999999999999999999876 88888863 22222211 1111 2357899999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH---c--CCC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE---M--KHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~---~--~~~ 238 (614)
|+++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++.+.. + .+.
T Consensus 81 Dv~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~ 154 (279)
T 3sju_A 81 DVTSTD------EVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGW 154 (279)
T ss_dssp CTTCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTC
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCC
Confidence 999876 6666654 68999999997532 355778899999999999998765 1 245
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+..... ....|+.||+..+.+.+..+. .
T Consensus 155 g~iV~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~ 196 (279)
T 3sju_A 155 GRIVNIASTGGKQGVM--------------------------------------YAAPYTASKHGVVGFTKSVGFELAKT 196 (279)
T ss_dssp EEEEEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred cEEEEECChhhccCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999986542210 015799999988887776554 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCC--chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNIN--GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~--g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
|+++..++||.|.++.......-....+ ............ .....+..++|+|++++.++..... -.
T Consensus 197 gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~a~--~i 265 (279)
T 3sju_A 197 GITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAK---------IPLGRYSTPEEVAGLVGYLVTDAAA--SI 265 (279)
T ss_dssp TEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHTSSGGG--GC
T ss_pred CcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccc--Cc
Confidence 8999999999986653211000000000 111222222221 1223467899999999988765432 13
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.++++++.+|
T Consensus 266 tG~~i~vdGG 275 (279)
T 3sju_A 266 TAQALNVCGG 275 (279)
T ss_dssp CSCEEEESTT
T ss_pred CCcEEEECCC
Confidence 6889999877
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=157.04 Aligned_cols=223 Identities=15% Similarity=0.168 Sum_probs=151.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+++||||+|+||++++++|++.|.+ .+|++..|+. ++++++.+ + ...++.++.+|+++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~-~~v~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~Dv~~ 61 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKD-TVVYGVARSE------APLKKLKE---------K----YGDRFFYVVGDITE 61 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSS-CEEEEEESCH------HHHHHHHH---------H----HGGGEEEEESCTTS
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCC-eEEEEecCCH------HHHHHHHH---------H----hCCceEEEECCCCC
Confidence 689999999999999999999999755 2577777753 23333211 1 12468999999999
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCceEE
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLA----KEMKHLELFV 242 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~~V 242 (614)
++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+ ++. + .++|
T Consensus 62 ~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~-g~iv 133 (254)
T 3kzv_A 62 DS------VLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT-N-GNVV 133 (254)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T-CEEE
T ss_pred HH------HHHHHHHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-C-CeEE
Confidence 76 6666654 68999999997431 3567788999999999999988 342 3 6899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLM 320 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~I 320 (614)
++||..+..... ....|+.||+..+.+.+..+. .|+++..
T Consensus 134 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~i~vn~ 175 (254)
T 3kzv_A 134 FVSSDACNMYFS--------------------------------------SWGAYGSSKAALNHFAMTLANEERQVKAIA 175 (254)
T ss_dssp EECCSCCCCSSC--------------------------------------CSHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEcCchhccCCC--------------------------------------CcchHHHHHHHHHHHHHHHHhhccCcEEEE
Confidence 999986543210 015799999999999988775 5899999
Q ss_pred eecceeecccCCCCccccC-CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh-hcCCCCccEEE
Q psy6053 321 LRPSIIIPVWREPLPGWTD-NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL-SQKEHRQSIVH 398 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d-~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~-~~~~~~~~vyn 398 (614)
++||.|..+.......... ....+ ......... .....+...+|+|++++.++.... . -..+++++
T Consensus 176 v~PG~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~r~~~p~dva~~v~~L~s~~~~~--~itG~~i~ 243 (254)
T 3kzv_A 176 VAPGIVDTDMQVNIRENVGPSSMSA-EQLKMFRGL---------KENNQLLDSSVPATVYAKLALHGIPD--GVNGQYLS 243 (254)
T ss_dssp EECSSCCCCCSCCCCCCCCTTTSCH-HHHHHHHHH---------HTTC----CHHHHHHHHHHHHHCCCG--GGTTCEEE
T ss_pred EeCCcccchhHHHhhcccCccccCH-HHHHHHHHH---------HhcCCcCCcccHHHHHHHHHhhcccC--CCCccEEE
Confidence 9999997765443221110 00011 111111111 011236788999999998887652 1 13678888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 244 vdg~ 247 (254)
T 3kzv_A 244 YNDP 247 (254)
T ss_dssp TTCG
T ss_pred ecCc
Confidence 8766
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-17 Score=164.57 Aligned_cols=224 Identities=15% Similarity=0.066 Sum_probs=155.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|+. +++++..+ +... ...++.++.+|+
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~---------~~~~-~~~~~~~~~~Dv 66 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGAK---VVVTARNG------NALAELTD---------EIAG-GGGEAAALAGDV 66 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEECCSCH------HHHHHHHH---------HHTT-TTCCEEECCCCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH---------HHHh-cCCcEEEEECCC
Confidence 56899999999999999999999999876 88888863 22322211 1111 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++++... .+..++
T Consensus 67 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~i 140 (280)
T 3tox_A 67 GDEA------LHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSL 140 (280)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEE
Confidence 9876 6666665 6899999999642 13567788999999999999887542 244689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... .| ....|+.||+..+.+.+..+. +|++
T Consensus 141 v~isS~~~~~~~---------~~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gIr 183 (280)
T 3tox_A 141 TFTSSFVGHTAG---------FA----------------------------GVAPYAASKAGLIGLVQALAVELGARGIR 183 (280)
T ss_dssp EEECCSBTTTBC---------CT----------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred EEEcChhhCcCC---------CC----------------------------CchhHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 999998654110 00 015799999999988877654 5899
Q ss_pred EEEeecceeecccCCC-CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 318 CLMLRPSIIIPVWREP-LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p-~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
+..++||.|.++.... .++ ..+ ........ ......+..++|+|++++.++..... -..+++
T Consensus 184 vn~v~PG~v~T~~~~~~~~~-----~~~-~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~a~--~itG~~ 246 (280)
T 3tox_A 184 VNALLPGGTDTPANFANLPG-----AAP-ETRGFVEG---------LHALKRIARPEEIAEAALYLASDGAS--FVTGAA 246 (280)
T ss_dssp EEEEEECSBSSTTSGGGSTT-----CCT-HHHHHHHT---------TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEECCCCCchhhhhccc-----cCH-HHHHHHhc---------cCccCCCcCHHHHHHHHHHHhCcccc--CCcCcE
Confidence 9999999997764321 100 011 11111111 11123467899999999998865432 136889
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.+|
T Consensus 247 i~vdGG 252 (280)
T 3tox_A 247 LLADGG 252 (280)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999888
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=161.13 Aligned_cols=223 Identities=11% Similarity=0.085 Sum_probs=153.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|+.. ++++..+ .+... ...++.++.+|+
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~~~Dv 79 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGAR---LVLSGRDVS------ELDAARR-----ALGEQ----FGTDVHTVAIDL 79 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHH----HCCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHHh----cCCcEEEEEecC
Confidence 57899999999999999999999999876 888888632 2222111 11110 225789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 241 (614)
++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... +.-.++
T Consensus 80 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~i 153 (266)
T 4egf_A 80 AEPD------APAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAI 153 (266)
T ss_dssp TSTT------HHHHHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9987 6666654 78999999997532 3557788999999999999887542 124589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|++
T Consensus 154 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gI~ 195 (266)
T 4egf_A 154 ITVASAAALAPLP--------------------------------------DHYAYCTSKAGLVMATKVLARELGPHGIR 195 (266)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHHhhhCeE
Confidence 9999987642210 015799999998888876654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|..+.... .............. .....+...+|+|++++.++..... -..++++
T Consensus 196 vn~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~p~dva~~v~~L~s~~~~--~itG~~i 257 (266)
T 4egf_A 196 ANSVCPTVVLTEMGQR-------VWGDEAKSAPMIAR---------IPLGRFAVPHEVSDAVVWLASDAAS--MINGVDI 257 (266)
T ss_dssp EEEEEESCBCSHHHHH-------HTCSHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeCCCcCchhhh-------hccChHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhc--CccCcEE
Confidence 9999999986653210 00111111122211 1112356799999999988865432 1368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 258 ~vdGG 262 (266)
T 4egf_A 258 PVDGG 262 (266)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99877
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=160.41 Aligned_cols=238 Identities=12% Similarity=0.077 Sum_probs=156.3
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc-------CHHHHHHHHHhChhhHHhhhhcccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK-------NARQRIEELFASPLFNLLKSVHGQKII 169 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~-------~~~~Rl~~~~~~~~f~~l~~~~p~~~~ 169 (614)
...+++|+++||||+|+||++++++|++.|.+ |+++.|..+.. ...+++++..+ .+. . ..
T Consensus 6 ~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~~ 72 (277)
T 3tsc_A 6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGAD---IIAVDIAGKLPSCVPYDPASPDDLSETVR-----LVE----A-AN 72 (277)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEECCSCCCTTCCSCCCCHHHHHHHHH-----HHH----H-TT
T ss_pred ccccCCCEEEEECCccHHHHHHHHHHHHcCCE---EEEEeccccccccccccccCHHHHHHHHH-----HHH----h-cC
Confidence 34467899999999999999999999999876 88888853210 01233333221 111 1 33
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
.++.++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+...
T Consensus 73 ~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 146 (277)
T 3tsc_A 73 RRIVAAVVDTRDFD------RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPR 146 (277)
T ss_dssp CCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57899999999876 6666654 58999999997532 3567788999999999998876542
Q ss_pred ----CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHH
Q psy6053 236 ----KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEA 311 (614)
Q Consensus 236 ----~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~ 311 (614)
+.-.++|++||..+..... ....|+.||+..+.+.+..
T Consensus 147 ~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~l 188 (277)
T 3tsc_A 147 IIEGGRGGSIILISSAAGMKMQP--------------------------------------FMIHYTASKHAVTGLARAF 188 (277)
T ss_dssp HHHHTSCEEEEEECCGGGTSCCS--------------------------------------SCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEccHhhCCCCC--------------------------------------CchhhHHHHHHHHHHHHHH
Confidence 1245899999987643210 0147999999999888776
Q ss_pred hh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcC-ceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 312 MN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKG-VIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 312 ~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g-~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+. +|+++..++||.|..+.... ............. ......... ...-+...+|+|++++.++...
T Consensus 189 a~e~~~~gi~vn~v~PG~v~T~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~p~r~~~pedvA~~v~~L~s~~ 259 (277)
T 3tsc_A 189 AAELGKHSIRVNSVHPGPVNTPMGSG--------DMVTAVGQAMETNPQLSHVLTPF-LPDWVAEPEDIADTVCWLASDE 259 (277)
T ss_dssp HHHHGGGTEEEEEEEESSBSSGGGSH--------HHHHHHHHHHHTCGGGTTTTCCS-SSCSCBCHHHHHHHHHHHHSGG
T ss_pred HHHhCccCeEEEEEEeCCCcCCcccc--------hhhhhhhhcccccHHHHHHhhhc-cCCCCCCHHHHHHHHHHHhCcc
Confidence 54 58999999999986653210 0000011111000 000000011 1113778999999999988654
Q ss_pred hhcCCCCccEEEeccC
Q psy6053 387 LSQKEHRQSIVHLTSS 402 (614)
Q Consensus 387 ~~~~~~~~~vyni~~~ 402 (614)
.. -..+.++++.++
T Consensus 260 ~~--~itG~~i~vdGG 273 (277)
T 3tsc_A 260 SR--KVTAAQIPVDQG 273 (277)
T ss_dssp GT--TCCSCEEEESTT
T ss_pred cc--CCcCCEEeeCCC
Confidence 32 136889998877
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=165.84 Aligned_cols=234 Identities=11% Similarity=-0.055 Sum_probs=143.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||+||++++++|++.|++ |+++.|+.... . . .+.+|++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~---V~~~~r~~~~~-------------------------~-~---~~~~Dl~~~ 49 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQ---IVGIDIRDAEV-------------------------I-A---DLSTAEGRK 49 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSSSSE-------------------------E-C---CTTSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCchhh-------------------------c-c---ccccCCCCH
Confidence 68999999999999999999999875 88899975431 0 1 156788775
Q ss_pred CCCCCHHHHHHHhc----cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeCceeccCCcc
Q psy6053 183 ELAIKESDRQLLAS----EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHISTAYCHLQEKV 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~----~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST~~~~~~~~~ 255 (614)
+ +++.+++ ++|++||+||......+++..+++|+.|+.++++++... .+..++|++||..+......
T Consensus 50 ~------~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 123 (257)
T 1fjh_A 50 Q------AIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFD 123 (257)
T ss_dssp H------HHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGG
T ss_pred H------HHHHHHHHhCCCCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccc
Confidence 4 6777765 459999999986534567889999999999999988642 34579999999976522110
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhh-hcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecceeeccc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKE-FLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~-~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g~~ 330 (614)
. + +..+.. ..-+.+........ ........|+.||...|.+++..+. .|+++++++||.|.++.
T Consensus 124 ~-------~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 192 (257)
T 1fjh_A 124 K-------N-PLALAL---EAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPL 192 (257)
T ss_dssp G-------C-TTHHHH---HHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----
T ss_pred c-------c-hhhhhh---cccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcc
Confidence 0 0 000100 00011111100000 0000125799999999998877654 58999999999987654
Q ss_pred CCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 331 REPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 331 ~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.... . ........... + ......+.+++|+|++++.++..... ...++++++.++
T Consensus 193 ~~~~-------~-~~~~~~~~~~~----~---~~~~~~~~~~~dvA~~~~~l~~~~~~--~~tG~~~~vdgG 247 (257)
T 1fjh_A 193 LQAG-------L-QDPRYGESIAK----F---VPPMGRRAEPSEMASVIAFLMSPAAS--YVHGAQIVIDGG 247 (257)
T ss_dssp ----------------------------C---CCSTTSCCCTHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred chhh-------c-cchhHHHHHHh----c---ccccCCCCCHHHHHHHHHHHhCchhc--CCcCCEEEECCC
Confidence 2210 0 00000000000 0 01112368899999999998865431 136788988877
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-16 Score=158.08 Aligned_cols=240 Identities=12% Similarity=0.063 Sum_probs=158.3
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc----------CHHHHHHHHHhChhhHHhhhhcc
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK----------NARQRIEELFASPLFNLLKSVHG 165 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~----------~~~~Rl~~~~~~~~f~~l~~~~p 165 (614)
+...+++|+++||||+|+||++++++|++.|.+ |+++.|++... ...+++++..+ .++
T Consensus 5 m~~~l~~k~~lVTGas~gIG~aia~~la~~G~~---V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---- 72 (286)
T 3uve_A 5 MTGRVEGKVAFVTGAARGQGRSHAVRLAQEGAD---IIAVDICKPIRAGVVDTAIPASTPEDLAETAD-----LVK---- 72 (286)
T ss_dssp -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEECCSCSBTTBCCCSSCCCCHHHHHHHHH-----HHH----
T ss_pred CCcccCCCEEEEeCCCchHHHHHHHHHHHCCCe---EEEEeccccccccccccccccCCHHHHHHHHH-----HHh----
Confidence 334577999999999999999999999999876 88888863211 11344443321 111
Q ss_pred ccccCeEEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHH
Q psy6053 166 QKIIDKVLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLS 230 (614)
Q Consensus 166 ~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~ 230 (614)
. ...++.++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++
T Consensus 73 ~-~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~ 145 (286)
T 3uve_A 73 G-HNRRIVTAEVDVRDYD------ALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVK 145 (286)
T ss_dssp T-TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred h-cCCceEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHH
Confidence 1 3357999999999876 6666654 68999999996431 35677889999999999998
Q ss_pred HHHHc----CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHH
Q psy6053 231 LAKEM----KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEG 306 (614)
Q Consensus 231 la~~~----~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~ 306 (614)
.+... +.-.++|++||..+..... ....|+.||+..+.
T Consensus 146 ~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~ 187 (286)
T 3uve_A 146 AGVPHMIAGGRGGSIILTSSVGGLKAYP--------------------------------------HTGHYVAAKHGVVG 187 (286)
T ss_dssp HHHHHHHHHTSCEEEEEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEEECchhhccCCC--------------------------------------CccHHHHHHHHHHH
Confidence 87642 1245899999986542210 01579999998888
Q ss_pred HHHHHhh----CCCCEEEeecceeecccCCCCcc---ccCCC--CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHH
Q psy6053 307 LVVEAMN----NGMPCLMLRPSIIIPVWREPLPG---WTDNI--NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITIN 377 (614)
Q Consensus 307 lv~~~~~----~glp~~IvRp~~I~g~~~~p~~g---w~d~~--~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~ 377 (614)
+.+..+. +|+++..++||.|..+....... +.... ..+.... ..... .. .....+...+|+|+
T Consensus 188 ~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~-~~p~r~~~p~dvA~ 259 (286)
T 3uve_A 188 LMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMA-PICQM------FH-TLPIPWVEPIDISN 259 (286)
T ss_dssp HHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHH-HHHHT------TC-SSSCSCBCHHHHHH
T ss_pred HHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhhHH-HHHHh------hh-ccCCCcCCHHHHHH
Confidence 8876654 58999999999997654321000 00000 0111110 00000 00 01135678999999
Q ss_pred HHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 378 GIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 378 aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
+++.++..... -..++++++.+|
T Consensus 260 ~v~fL~s~~a~--~itG~~i~vdGG 282 (286)
T 3uve_A 260 AVLFFASDEAR--YITGVTLPIDAG 282 (286)
T ss_dssp HHHHHHSGGGT--TCCSCEEEESTT
T ss_pred HHHHHcCcccc--CCcCCEEeECCc
Confidence 99998865432 136889999877
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=165.72 Aligned_cols=196 Identities=19% Similarity=0.203 Sum_probs=140.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|... +++++.+ .++. ...++.++.+|+
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~Dl 89 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSK---LVLWDINKH------GLEETAA-----KCKG-----LGAKVHTFVVDC 89 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEEcCHH------HHHHHHH-----HHHh-----cCCeEEEEEeeC
Confidence 67899999999999999999999999875 888988642 2222111 1111 224789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 90 ~~~~------~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv 163 (272)
T 1yb1_A 90 SNRE------DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIV 163 (272)
T ss_dssp TCHH------HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 6666654 68999999997532 2456778999999988877766431 3668999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-------CC
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-------NG 315 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-------~g 315 (614)
++||..+..... + ...|+.||+..|.+++.... .|
T Consensus 164 ~isS~~~~~~~~--------------------------------~------~~~Y~~sK~a~~~l~~~la~e~~~~~~~g 205 (272)
T 1yb1_A 164 TVASAAGHVSVP--------------------------------F------LLAYCSSKFAAVGFHKTLTDELAALQITG 205 (272)
T ss_dssp EECCCC-CCCHH--------------------------------H------HHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred EEechhhcCCCC--------------------------------C------chhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999987643210 0 15799999999988876544 28
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
++++++|||.|.++... . .. .....+++++|+|++++.++...
T Consensus 206 i~v~~v~Pg~v~t~~~~-------~--~~-------------------~~~~~~~~~~dva~~i~~~~~~~ 248 (272)
T 1yb1_A 206 VKTTCLCPNFVNTGFIK-------N--PS-------------------TSLGPTLEPEEVVNRLMHGILTE 248 (272)
T ss_dssp EEEEEEEETHHHHCSTT-------C--TH-------------------HHHCCCCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCcccCCccc-------c--cc-------------------ccccCCCCHHHHHHHHHHHHHcC
Confidence 99999999988665311 0 00 01124678999999999988653
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=159.75 Aligned_cols=221 Identities=11% Similarity=0.049 Sum_probs=152.8
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+|+||||+ |+||++++++|++.|.+ |+++.|+... .+.++++.+ ...++.++.+
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~---V~~~~r~~~~---~~~~~~l~~--------------~~~~~~~~~~ 63 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGAT---LAFTYLNESL---EKRVRPIAQ--------------ELNSPYVYEL 63 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCE---EEEEESSTTT---HHHHHHHHH--------------HTTCCCEEEC
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCE---EEEEeCCHHH---HHHHHHHHH--------------hcCCcEEEEc
Confidence 568999999999 99999999999999875 8899997642 233333311 1123678999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-CCC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-KHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~ 238 (614)
|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+-
T Consensus 64 D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 137 (275)
T 2pd4_A 64 DVSKEE------HFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNG 137 (275)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 999865 6666654 67999999996532 3457788999999999999999763 112
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. .
T Consensus 138 g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~ 179 (275)
T 2pd4_A 138 ASVLTLSYLGSTKYM----------A----------------------------HYNVMGLAKAALESAVRYLAVDLGKH 179 (275)
T ss_dssp EEEEEEECGGGTSBC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecchhcCCC----------C----------------------------CchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 589999997653211 0 014799999999998877654 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++++++||.|.++.... ..........+.... + ...+...+|+|++++.++..... ...+
T Consensus 180 gi~v~~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~~-------p--~~~~~~p~dva~~~~~l~s~~~~--~~tG 241 (275)
T 2pd4_A 180 HIRVNALSAGPIRTLASSG-------IADFRMILKWNEINA-------P--LRKNVSLEEVGNAGMYLLSSLSS--GVSG 241 (275)
T ss_dssp TCEEEEEEECCCCCTTGGG-------STTHHHHHHHHHHHS-------T--TSSCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CeEEEEEeeCccccchhhh-------ccccHHHHHHHHhcC-------C--cCCCCCHHHHHHHHHHHhCcccc--CCCC
Confidence 8999999999997753221 111111221111110 0 01256789999999998864331 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.++++.++
T Consensus 242 ~~~~vdgg 249 (275)
T 2pd4_A 242 EVHFVDAG 249 (275)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 78888776
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-17 Score=162.26 Aligned_cols=223 Identities=13% Similarity=0.097 Sum_probs=148.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|........+.+.+.+ + . ...++.++.+|+
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~--------~----~-~~~~~~~~~~Dv 72 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESVN---LVLHYHQAKDSDTANKLKDEL--------E----D-QGAKVALYQSDL 72 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSCE---EEEEESCGGGHHHHHHHHHHH--------H----T-TTCEEEEEECCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEecCccCHHHHHHHHHHH--------H----h-cCCcEEEEECCC
Confidence 57899999999999999999999999876 888888654322222222211 1 1 335799999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 73 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 73 SNEE------EVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp CSHH------HHHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 9976 6766665 68999999996431 3567788999999999999998862 234689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+..+.+.+..+. +|+.+..
T Consensus 147 sS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~ 188 (262)
T 3ksu_A 147 ATSLLAAYTG--------------------------------------FYSTYAGNKAPVEHYTRAASKELMKQQISVNA 188 (262)
T ss_dssp CCCHHHHHHC--------------------------------------CCCC-----CHHHHHHHHHHHHTTTTTCEEEE
T ss_pred echhhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 9986532210 125799999999988877665 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.|..+.... .... ... ...........+...+|+|++++.++.. .. -..++++++.
T Consensus 189 v~PG~v~T~~~~~-------~~~~-~~~---------~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~--~itG~~i~vd 248 (262)
T 3ksu_A 189 IAPGPMDTSFFYG-------QETK-EST---------AFHKSQAMGNQLTKIEDIAPIIKFLTTD-GW--WINGQTIFAN 248 (262)
T ss_dssp EEECCCCTHHHHT-------CC----------------------CCCCSCCGGGTHHHHHHHHTT-TT--TCCSCEEEES
T ss_pred EeeCCCcCccccc-------cCch-HHH---------HHHHhcCcccCCCCHHHHHHHHHHHcCC-CC--CccCCEEEEC
Confidence 9999885442110 0000 000 0001111223467889999999988865 21 2368899988
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 249 Gg 250 (262)
T 3ksu_A 249 GG 250 (262)
T ss_dssp TT
T ss_pred CC
Confidence 77
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=159.81 Aligned_cols=203 Identities=13% Similarity=0.137 Sum_probs=143.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+|+||||||+|+||++++++|++.|.+ |+++.|.. +++++. ...++.++.+|+
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~----------------~~~~~~~~~~Dv 68 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHP---LLLLARRV------ERLKAL----------------NLPNTLCAQVDV 68 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCC---EEEEESCH------HHHHTT----------------CCTTEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHh----------------hcCCceEEEecC
Confidence 56799999999999999999999999987 88888863 233221 234688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 69 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV 142 (266)
T 3p19_A 69 TDKY------TFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTII 142 (266)
T ss_dssp TCHH------HHHHHHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9865 6666665 78999999997532 3567788999999999977766421 3567999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. .|+++
T Consensus 143 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 184 (266)
T 3p19_A 143 NISSIAGKKTFP--------------------------------------DHAAYCGTKFAVHAISENVREEVAASNVRV 184 (266)
T ss_dssp EECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEcChhhCCCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhcccCcEE
Confidence 999987643210 015799999999888876654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
..++||.|.++... ..... ........... ....++.++|+|++++.++..+.
T Consensus 185 n~v~PG~v~T~~~~-------~~~~~-~~~~~~~~~~~--------~~~r~~~pedvA~av~~l~~~~~ 237 (266)
T 3p19_A 185 MTIAPSAVKTELLS-------HTTSQ-QIKDGYDAWRV--------DMGGVLAADDVARAVLFAYQQPQ 237 (266)
T ss_dssp EEEEECSBSSSGGG-------GCSCH-HHHHHHHHHHH--------HTTCCBCHHHHHHHHHHHHHSCT
T ss_pred EEEeeCccccchhh-------cccch-hhhHHHHhhcc--------cccCCCCHHHHHHHHHHHHcCCC
Confidence 99999999765321 11111 11111100000 11236789999999999987654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=159.68 Aligned_cols=206 Identities=8% Similarity=0.053 Sum_probs=135.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|.+ |+++.|+.... +.+.+. ++. ...++.++.+|+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~---V~~~~r~~~~~---~~~~~~--------~~~-----~~~~~~~~~~Dv 65 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFT---VFAGRRNGEKL---APLVAE--------IEA-----AGGRIVARSLDA 65 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCE---EEEEESSGGGG---HHHHHH--------HHH-----TTCEEEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEeCCHHHH---HHHHHH--------HHh-----cCCeEEEEECcC
Confidence 46899999999999999999999999875 88899965332 112111 111 235799999999
Q ss_pred CCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 66 ~~~~------~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~ 139 (252)
T 3h7a_A 66 RNED------EVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFF 139 (252)
T ss_dssp TCHH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9976 6777665 67999999996432 3567788999999999988877431 24468999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE-
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC- 318 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~- 318 (614)
+||..+.... | ....|+.||+..+.+.+..+. .|+.+
T Consensus 140 isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~ 181 (252)
T 3h7a_A 140 TGATASLRGG----------S----------------------------GFAAFASAKFGLRAVAQSMARELMPKNIHVA 181 (252)
T ss_dssp EEEGGGTCCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCHHHcCCC----------C----------------------------CCccHHHHHHHHHHHHHHHHHHhhhcCCEEE
Confidence 9998653221 0 015799999998888876654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
.++.||.|..+..... . .... . . ........ +...+|+|++++.++..+.
T Consensus 182 n~v~PG~v~T~~~~~~-------~--~~~~----~----~-~~~~~~~~-~~~pedvA~~~~~l~s~~~ 231 (252)
T 3h7a_A 182 HLIIDSGVDTAWVRER-------R--EQMF----G----K-DALANPDL-LMPPAAVAGAYWQLYQQPK 231 (252)
T ss_dssp EEEEC----------------------------------------------CCHHHHHHHHHHHHHCCG
T ss_pred EEecCCccCChhhhcc-------c--hhhh----h----h-hhhcCCcc-CCCHHHHHHHHHHHHhCch
Confidence 8999998865432110 0 0000 0 0 00111112 7899999999999987554
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=166.10 Aligned_cols=235 Identities=15% Similarity=0.113 Sum_probs=156.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|+. +++++..+ .+..... ...++.++.+|+
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~---V~~~~r~~------~~~~~~~~-----~l~~~~~--~~~~~~~~~~Dv 87 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQ---VTITGRNE------DRLEETKQ-----QILKAGV--PAEKINAVVADV 87 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHTTC--CGGGEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHhcCC--CCceEEEEecCC
Confidence 56899999999999999999999999876 88888863 22222111 1111000 112689999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+ .+
T Consensus 88 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~ 160 (297)
T 1xhl_A 88 TEAS------GQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GE 160 (297)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CE
Confidence 9875 6666655 6899999999642 2 3457788999999999999888652 23 69
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... | ....|+.||+..+.+.+..+. .|+
T Consensus 161 IV~isS~~~~~~~~---------~----------------------------~~~~Y~asKaa~~~l~~~la~el~~~gI 203 (297)
T 1xhl_A 161 IVNVSSIVAGPQAH---------S----------------------------GYPYYACAKAALDQYTRCTAIDLIQHGV 203 (297)
T ss_dssp EEEECCGGGSSSCC---------T----------------------------TSHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEEcCchhccCCC---------C----------------------------CcchHHHHHHHHHHHHHHHHHHhcccCe
Confidence 99999986543210 0 014799999999988877653 599
Q ss_pred CEEEeecceeecccCCCCccccCCCCchH-----HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh-hhcC
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPT-----GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY-LSQK 390 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~-----~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~-~~~~ 390 (614)
+++++|||.|.++..... . ..... ......... .....+...+|+|++++.++... ..
T Consensus 204 ~v~~v~PG~v~T~~~~~~---~--~~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~l~s~~~~~-- 267 (297)
T 1xhl_A 204 RVNSVSPGAVATGFMGAM---G--LPETASDKLYSFIGSRKEC---------IPVGHCGKPEEIANIIVFLADRNLSS-- 267 (297)
T ss_dssp EEEEEEECCBCSSHHHHT---T--CCHHHHHHHHHHHHHCTTT---------CTTSSCBCHHHHHHHHHHHHCHHHHT--
T ss_pred EEEEEeeCCCcCcccccc---c--cccccccchHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCCcccC--
Confidence 999999999976532100 0 00000 111111111 01124788999999999888654 21
Q ss_pred CCCccEEEeccCCcccccHHHH
Q psy6053 391 EHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 391 ~~~~~vyni~~~~~~~it~~e~ 412 (614)
-..+.++++.++ ..+...+.
T Consensus 268 ~itG~~i~vdGG--~~~~~~~~ 287 (297)
T 1xhl_A 268 YIIGQSIVADGG--STLVMGMQ 287 (297)
T ss_dssp TCCSCEEEESTT--GGGCCGGG
T ss_pred CccCcEEEECCC--cccccccc
Confidence 136789999887 54554443
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=160.29 Aligned_cols=227 Identities=15% Similarity=0.117 Sum_probs=153.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|++ |+++.|.. ++++++.+ ...++.++.+|+
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~Dv 63 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGAR---VVICDKDE------SGGRALEQ--------------ELPGAVFILCDV 63 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------HCTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH--------------HhcCCeEEEcCC
Confidence 57899999999999999999999999875 88888863 22222211 113478899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 64 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv 137 (270)
T 1yde_A 64 TQED------DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVI 137 (270)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEE
Confidence 9865 6666655 68999999996431 2457788999999999999988641 1247999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..|.+.+..+. +|+++
T Consensus 138 ~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v 179 (270)
T 1yde_A 138 NISSLVGAIGQ----------A----------------------------QAVPYVATKGAVTAMTKALALDESPYGVRV 179 (270)
T ss_dssp EECCHHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEcCccccCCC----------C----------------------------CCcccHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 99998543211 0 014799999999998887653 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
.++|||.|.++..... ......+...+....... ....+...+|+|++++.++.... -..+++++
T Consensus 180 n~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~~~~~~---------p~~r~~~p~dva~~v~~L~s~~~---~itG~~i~ 244 (270)
T 1yde_A 180 NCISPGNIWTPLWEEL---AALMPDPRASIREGMLAQ---------PLGRMGQPAEVGAAAVFLASEAN---FCTGIELL 244 (270)
T ss_dssp EEEEECSBCCHHHHHH---HTTSSSHHHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHHHCT---TCCSCEEE
T ss_pred EEEEeCccccchhhhh---hhcccchHHHHHHHhhcC---------CCCCCcCHHHHHHHHHHHcccCC---CcCCCEEE
Confidence 9999999987632100 000011111111111100 01125678999999988876521 23678999
Q ss_pred eccCCcccccHH
Q psy6053 399 LTSSQEWQVSWQ 410 (614)
Q Consensus 399 i~~~~~~~it~~ 410 (614)
+.++ ..+.+.
T Consensus 245 vdGG--~~~~~~ 254 (270)
T 1yde_A 245 VTGG--AELGYG 254 (270)
T ss_dssp ESTT--TTSCC-
T ss_pred ECCC--eecccC
Confidence 9887 444443
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=162.87 Aligned_cols=209 Identities=19% Similarity=0.198 Sum_probs=140.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|.+ |+++.|+. ++++++.+ .++... ...++.++.+|+
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~~~---~~~~~~~~~~Dl 92 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLK---VVGCARTV------GNIEELAA-----ECKSAG---YPGTLIPYRCDL 92 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHTT---CSSEEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEECCh------HHHHHHHH-----HHHhcC---CCceEEEEEecC
Confidence 67899999999999999999999999875 88899863 22222111 111111 125788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHH----HHHHHHHHHHcCCC--c
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRG----TKMMLSLAKEMKHL--E 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~g----t~~ll~la~~~~~~--k 239 (614)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.| ++.+++.+++. +. .
T Consensus 93 ~~~~------~v~~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g 165 (279)
T 1xg5_A 93 SNEE------DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDG 165 (279)
T ss_dssp TCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSC
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCc
Confidence 9865 6666654 79999999996432 35677889999999 77778888773 54 7
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh------h
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM------N 313 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~------~ 313 (614)
++|++||..+..... .+ ....|+.||+..|.+++... .
T Consensus 166 ~iv~isS~~~~~~~~--------~~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~ 209 (279)
T 1xg5_A 166 HIININSMSGHRVLP--------LS----------------------------VTHFYSATKYAVTALTEGLRQELREAQ 209 (279)
T ss_dssp EEEEECCGGGTSCCS--------CG----------------------------GGHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEcChhhcccCC--------CC----------------------------CCchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999987642110 00 01579999999888776543 2
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
.++++++++||.|.++... .... ..+.. .... .....++.++|+|++++.++..+
T Consensus 210 ~~i~v~~v~Pg~v~t~~~~---~~~~--~~~~~-~~~~------------~~~~~~~~~~dvA~~i~~l~~~~ 264 (279)
T 1xg5_A 210 THIRATCISPGVVETQFAF---KLHD--KDPEK-AAAT------------YEQMKCLKPEDVAEAVIYVLSTP 264 (279)
T ss_dssp CCCEEEEEEESCBCSSHHH---HHTT--TCHHH-HHHH------------HC---CBCHHHHHHHHHHHHHSC
T ss_pred CCeEEEEEecCcccchhhh---hhcc--cChhH-Hhhh------------cccccCCCHHHHHHHHHHHhcCC
Confidence 4899999999988654210 0000 00111 0000 01123678999999999988754
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-16 Score=159.25 Aligned_cols=221 Identities=13% Similarity=0.125 Sum_probs=152.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|... +++++..+ .++ . ...++.++.+|+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~---V~~~~~~~~-----~~~~~~~~-----~l~----~-~~~~~~~~~~Dv 90 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAA---VALTYVNAA-----ERAQAVVS-----EIE----Q-AGGRAVAIRADN 90 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCH-----HHHHHHHH-----HHH----H-TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCCH-----HHHHHHHH-----HHH----h-cCCcEEEEECCC
Confidence 57899999999999999999999999876 777766532 22222111 111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 91 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 91 RDAE------AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9876 6666665 78999999997432 3567788999999999999998763 345689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... .| ....|+.||+..+.+.+..+. +|+++..
T Consensus 165 sS~~~~~~~---------~~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~ 207 (271)
T 3v2g_A 165 GSNLAELVP---------WP----------------------------GISLYSASKAALAGLTKGLARDLGPRGITVNI 207 (271)
T ss_dssp CCGGGTCCC---------ST----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred eChhhccCC---------CC----------------------------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEE
Confidence 997442110 00 015799999999888876654 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.|.++.....+. ... ...... ....+...+|+|++++.++..... -..++++++.
T Consensus 208 v~PG~v~T~~~~~~~~------~~~----~~~~~~---------~~~r~~~pedvA~~v~fL~s~~~~--~itG~~i~vd 266 (271)
T 3v2g_A 208 VHPGSTDTDMNPADGD------HAE----AQRERI---------ATGSYGEPQDIAGLVAWLAGPQGK--FVTGASLTID 266 (271)
T ss_dssp EEECSBCSSSSCSSCS------SHH----HHHHTC---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred EecCCCcCCcccccch------hHH----HHHhcC---------CCCCCCCHHHHHHHHHHHhCcccC--CccCCEEEeC
Confidence 9999997764322110 001 111110 112256789999999888854432 1368899887
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
+|
T Consensus 267 GG 268 (271)
T 3v2g_A 267 GG 268 (271)
T ss_dssp TT
T ss_pred cC
Confidence 76
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=163.60 Aligned_cols=216 Identities=14% Similarity=0.090 Sum_probs=141.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||||+||++++++|++.|.+ |+++.|+. +++++..+ .++. ...++.++.+|+
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~l~~-----~~~~~~~~~~Dv 89 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGAR---LVLSDVDQ------PALEQAVN-----GLRG-----QGFDAHGVVCDV 89 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHh-----cCCceEEEEccC
Confidence 67899999999999999999999999875 88888864 22222211 1111 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc----CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM----KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~----~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... +...++
T Consensus 90 ~d~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~i 163 (301)
T 3tjr_A 90 RHLD------EMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHI 163 (301)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9876 6666655 78999999996531 3556788999999999999987541 224689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..+.+.+..+. .|++
T Consensus 164 v~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~ 205 (301)
T 3tjr_A 164 AFTASFAGLVPN----------A----------------------------GLGTYGVAKYGVVGLAETLAREVKPNGIG 205 (301)
T ss_dssp EEECCGGGTSCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEeCchhhcCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhcccCcE
Confidence 999998764321 0 015799999988887776554 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+++++||.|..+....... ....... .........+......++++++|||++++.++...
T Consensus 206 v~~v~PG~v~T~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 206 VSVLCPMVVETKLVSNSER-------IRGADYG-MSATPEGAFGPLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp EEEECCSCCCSSHHHHHHH-------HC-----------------------CCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCcccccccccccc-------ccchhhc-cccChhhhccccccccCCCCHHHHHHHHHHHHhcC
Confidence 9999999885432100000 0000000 00000111122334456899999999999998764
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=159.90 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=145.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|..... ..+..+.+|+
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~---------------------------~~~~~~~~D~ 62 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHK---VAVTHRGSGAP---------------------------KGLFGVEVDV 62 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSSCCC---------------------------TTSEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCChHHH---------------------------HHhcCeeccC
Confidence 57899999999999999999999999865 88899975421 1122478999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 63 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv 136 (247)
T 1uzm_A 63 TDSD------AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMI 136 (247)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9865 6666654 57999999997542 3567788999999999999887641 3567999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..|.+.+.... .|+++
T Consensus 137 ~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 178 (247)
T 1uzm_A 137 FIGSVSGLWGI----------G----------------------------NQANYAASKAGVIGMARSIARELSKANVTA 178 (247)
T ss_dssp EECCCCC-------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHhhccCC----------C----------------------------CChhHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 99998653211 0 015799999988887776543 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++++||.|.++... .. . .......... .....+.+.+|+|++++.++..... -..+++++
T Consensus 179 ~~v~PG~v~t~~~~-------~~-~-~~~~~~~~~~---------~p~~~~~~~~dvA~~~~~l~s~~~~--~~~G~~i~ 238 (247)
T 1uzm_A 179 NVVAPGYIDTDMTR-------AL-D-ERIQQGALQF---------IPAKRVGTPAEVAGVVSFLASEDAS--YISGAVIP 238 (247)
T ss_dssp EEEEECSBCCHHHH-------HS-C-HHHHHHHGGG---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEeCCCcccchh-------hc-C-HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc--CCcCCEEE
Confidence 99999988654211 00 0 1111111110 0112368999999999988864331 13678999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 239 vdgG 242 (247)
T 1uzm_A 239 VDGG 242 (247)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8877
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=160.42 Aligned_cols=222 Identities=9% Similarity=0.031 Sum_probs=154.7
Q ss_pred ccCCcEEEEeccccc--ccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGASGF--LGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaTGF--lG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.+++|+|+||||+|+ ||++++++|++.|.+ |++..|... ..+.++++.+ ...++.++.
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~---V~~~~r~~~---~~~~~~~~~~--------------~~~~~~~~~ 87 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAE---LAFTYQGDA---LKKRVEPLAE--------------ELGAFVAGH 87 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCE---EEEEECSHH---HHHHHHHHHH--------------HHTCEEEEE
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE---EEEEcCCHH---HHHHHHHHHH--------------hcCCceEEE
Confidence 467899999999999 999999999999876 888888632 2233333321 124588999
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-KH 237 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~ 237 (614)
+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+
T Consensus 88 ~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~ 161 (293)
T 3grk_A 88 CDVADAA------SIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD 161 (293)
T ss_dssp CCTTCHH------HHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT
T ss_pred CCCCCHH------HHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999976 6666664 68999999997641 3567788999999999999998763 23
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+..... ....|+.||+..+.+.+..+.
T Consensus 162 ~g~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~ 203 (293)
T 3grk_A 162 GGSILTLTYYGAEKVMP--------------------------------------NYNVMGVAKAALEASVKYLAVDLGP 203 (293)
T ss_dssp CEEEEEEECGGGTSBCT--------------------------------------TTTHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCEEEEEeehhhccCCC--------------------------------------chHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45899999986543210 015799999999988877654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+|+++..++||.|..+..... .............. ....+...+|+|++++.++..... -..
T Consensus 204 ~gI~vn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------p~~r~~~pedvA~~v~~L~s~~~~--~it 265 (293)
T 3grk_A 204 QNIRVNAISAGPIKTLAASGI-------GDFRYILKWNEYNA---------PLRRTVTIDEVGDVGLYFLSDLSR--SVT 265 (293)
T ss_dssp GTEEEEEEEECCCCC-------------CCHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT--TCC
T ss_pred hCCEEEEEecCCCcchhhhcc-------cchHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCcccc--CCc
Confidence 589999999999976543211 11112222221111 112356789999999988865432 236
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.++
T Consensus 266 G~~i~vdGG 274 (293)
T 3grk_A 266 GEVHHADSG 274 (293)
T ss_dssp SCEEEESTT
T ss_pred ceEEEECCC
Confidence 889999887
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=159.99 Aligned_cols=218 Identities=12% Similarity=0.064 Sum_probs=150.3
Q ss_pred CCcEEEEecccccccHHHHHHHHh-hCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILR-KSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~-~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++|+||||||+|+||++++++|++ .|. +|++..|.... ...++.++.+|+
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~---~v~~~~~~~~~--------------------------~~~~~~~~~~Dv 53 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNH---TVINIDIQQSF--------------------------SAENLKFIKADL 53 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTE---EEEEEESSCCC--------------------------CCTTEEEEECCT
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCc---EEEEecccccc--------------------------ccccceEEecCc
Confidence 578999999999999999999999 554 47788876542 224678999999
Q ss_pred CCCCCCCCHHHHHHHhc-----cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLAS-----EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-----~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST 246 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... ..-.++|++||
T Consensus 54 ~~~~------~v~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS 127 (244)
T 4e4y_A 54 TKQQ------DITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGS 127 (244)
T ss_dssp TCHH------HHHHHHHHTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECC
T ss_pred CCHH------HHHHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECC
Confidence 9876 7777765 78999999997431 3567788999999999999988763 11147999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+..... ....|+.||+..|.+.+..+. +|+++..++
T Consensus 128 ~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~ 169 (244)
T 4e4y_A 128 DQCFIAKP--------------------------------------NSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVC 169 (244)
T ss_dssp GGGTCCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred HHHccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEe
Confidence 86543210 014799999999998877654 589999999
Q ss_pred cceeecccCCCCcc-ccCC-CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 323 PSIIIPVWREPLPG-WTDN-INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 323 p~~I~g~~~~p~~g-w~d~-~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
||.|.++....... +... ...+........ .......+..++|+|++++.++..... -..++++++.
T Consensus 170 PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~l~s~~~~--~itG~~i~vd 238 (244)
T 4e4y_A 170 PGTVDTDLYRNLIQKYANNVGISFDEAQKQEE---------KEFPLNRIAQPQEIAELVIFLLSDKSK--FMTGGLIPID 238 (244)
T ss_dssp ESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHH---------TTSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred cCccCchhhHHHHHhhhhhcCCCHHHHHHHHh---------hcCCCCCCcCHHHHHHHHHHHhcCccc--cccCCeEeEC
Confidence 99986652110000 0000 000000111111 112223467899999999998865432 1368899998
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 239 GG 240 (244)
T 4e4y_A 239 GG 240 (244)
T ss_dssp TT
T ss_pred CC
Confidence 77
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=164.82 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=153.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||++|||||+|+||++++++|++.|.+ |+++.|.. +++++..+ .++ . ...++.++.+|+
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~-----~l~----~-~~~~~~~~~~Dv 84 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAGAR---ILINGTDP------SRVAQTVQ-----EFR----N-VGHDAEAVAFDV 84 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEECCSCH------HHHHHHHH-----HHH----H-TTCCEEECCCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHH----h-cCCceEEEEcCC
Confidence 67899999999999999999999999875 88887753 22222211 111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+... .+..++|
T Consensus 85 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV 158 (271)
T 4ibo_A 85 TSES------EIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIV 158 (271)
T ss_dssp TCHH------HHHHHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9866 6766665 6899999999643 13567788999999999998877542 2446899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 159 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~v 200 (271)
T 4ibo_A 159 NIGSLTSELARA--------------------------------------TVAPYTVAKGGIKMLTRAMAAEWAQYGIQA 200 (271)
T ss_dssp EECCGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEccHHhCCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHHhhhCeEE
Confidence 999986532210 015799999999988877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..++||.|.++..... .+ . .........+. ....+..++|+|++++.++..... -..+++++
T Consensus 201 n~v~PG~v~T~~~~~~---~~---~-~~~~~~~~~~~---------p~~r~~~pedva~~v~~L~s~~~~--~itG~~i~ 262 (271)
T 4ibo_A 201 NAIGPGYMLTDMNQAL---ID---N-PEFDAWVKART---------PAKRWGKPQELVGTAVFLSASASD--YVNGQIIY 262 (271)
T ss_dssp EEEEECSBCSGGGHHH---HH---C-HHHHHHHHHHS---------TTCSCBCGGGGHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEeccEeCcchhhc---cc---C-HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--CCCCcEEE
Confidence 9999999876532110 00 0 01111111111 112356789999999988765432 23688999
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 263 vdGG 266 (271)
T 4ibo_A 263 VDGG 266 (271)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=163.08 Aligned_cols=238 Identities=11% Similarity=0.084 Sum_probs=157.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc------CHHHHHHHHHhChhhHHhhhhccccccCeE
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK------NARQRIEELFASPLFNLLKSVHGQKIIDKV 172 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~------~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v 172 (614)
.+++|+||||||+|+||++++++|++.|.+ |+++.|..... ...+++++..+ .+. . ...++
T Consensus 43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~---Vv~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~~~~~ 109 (317)
T 3oec_A 43 RLQGKVAFITGAARGQGRTHAVRLAQDGAD---IVAIDLCRQQPNLDYAQGSPEELKETVR-----LVE----E-QGRRI 109 (317)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEECCCCCTTCCSCCCCHHHHHHHHH-----HHH----H-TTCCE
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCe---EEEEecccccccccccccCHHHHHHHHH-----HHH----h-cCCeE
Confidence 367899999999999999999999999876 78887763221 11334443321 111 1 33578
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---
Q psy6053 173 LPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM--- 235 (614)
Q Consensus 173 ~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--- 235 (614)
.++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+...
T Consensus 110 ~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 183 (317)
T 3oec_A 110 IARQADVRDLA------SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIE 183 (317)
T ss_dssp EEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999866 6666665 68999999997532 3567788999999999999887542
Q ss_pred -CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-
Q psy6053 236 -KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN- 313 (614)
Q Consensus 236 -~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~- 313 (614)
+.-.++|++||..+..... ....|+.||+..+.+.+..+.
T Consensus 184 ~~~~g~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e 225 (317)
T 3oec_A 184 RGQGGSVIFVSSTVGLRGAP--------------------------------------GQSHYAASKHGVQGLMLSLANE 225 (317)
T ss_dssp TCSCEEEEEECCGGGSSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECcHHhcCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHH
Confidence 2245799999986542210 014799999999988877655
Q ss_pred ---CCCCEEEeecceeecccCCCCc---cccCCCCch-HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 314 ---NGMPCLMLRPSIIIPVWREPLP---GWTDNINGP-TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 314 ---~glp~~IvRp~~I~g~~~~p~~---gw~d~~~g~-~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
.|+++..++||.|.++...... .+......+ ..-....... .......++.++|+|++++.++...
T Consensus 226 ~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~pedvA~av~fL~s~~ 298 (317)
T 3oec_A 226 VGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQ-------LTLLPIPWVEPEDVSNAVAWLASDE 298 (317)
T ss_dssp HGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTT-------TCSSSSSSBCHHHHHHHHHHHTSGG
T ss_pred HhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHhh-------hccCCCCCCCHHHHHHHHHHHcCCc
Confidence 5899999999999765321000 000000000 0000010000 0111146789999999999887554
Q ss_pred hhcCCCCccEEEeccC
Q psy6053 387 LSQKEHRQSIVHLTSS 402 (614)
Q Consensus 387 ~~~~~~~~~vyni~~~ 402 (614)
.. -..++++++.+|
T Consensus 299 a~--~itG~~i~vdGG 312 (317)
T 3oec_A 299 AR--YIHGAAIPVDGG 312 (317)
T ss_dssp GT--TCCSCEEEESTT
T ss_pred cc--CCCCCEEEECcc
Confidence 32 136889999877
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-17 Score=163.62 Aligned_cols=223 Identities=12% Similarity=0.067 Sum_probs=150.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
..++|+|+||||+|+||++++++|++.|.+ |++..|... +++++... .+. . ...++.++.+|
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~---v~~~~~~~~-----~~~~~~~~-----~~~----~-~~~~~~~~~~D 83 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMA---VAVSHSERN-----DHVSTWLM-----HER----D-AGRDFKAYAVD 83 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCE---EEEEECSCH-----HHHHHHHH-----HHH----T-TTCCCEEEECC
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCch-----HHHHHHHH-----HHH----h-cCCceEEEEec
Confidence 367899999999999999999999999876 777775432 11221110 001 1 33578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++
T Consensus 84 l~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~i 157 (269)
T 3gk3_A 84 VADFE------SCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRI 157 (269)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEE
Confidence 99876 6666654 78999999996532 3567788999999999998887541 245789
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. .|++
T Consensus 158 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~ 199 (269)
T 3gk3_A 158 VNIGSVNGSRGAF--------------------------------------GQANYASAKAGIHGFTKTLALETAKRGIT 199 (269)
T ss_dssp EEECCHHHHHCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEeCChhhccCCC--------------------------------------CcchHHHHHHHHHHHHHHHHHHhhhcCCE
Confidence 9999986532210 015799999988877766544 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..++||.|..+.....+. .. .... .........+..++|+|++++.++..... ...++++
T Consensus 200 v~~v~PG~v~T~~~~~~~~---------~~----~~~~----~~~~~~~~~~~~p~dvA~~v~~L~s~~~~--~itG~~i 260 (269)
T 3gk3_A 200 VNTVSPGYLATAMVEAVPQ---------DV----LEAK----ILPQIPVGRLGRPDEVAALIAFLCSDDAG--FVTGADL 260 (269)
T ss_dssp EEEEEECSBCCTTTTC--------------------CC----SGGGCTTSSCBCHHHHHHHHHHHTSTTCT--TCCSCEE
T ss_pred EEEEecCcccchhhhhhch---------hH----HHHH----hhhcCCcCCccCHHHHHHHHHHHhCCCcC--CeeCcEE
Confidence 9999999987654321110 00 0000 00111223456899999999988765431 1368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.+|
T Consensus 261 ~vdgG 265 (269)
T 3gk3_A 261 AINGG 265 (269)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=158.00 Aligned_cols=222 Identities=13% Similarity=0.101 Sum_probs=147.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|..... ..+..+++ + . ...++.++.+|+
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~~---V~~~~~~~~~~-~~~~~~~~---------~----~-~~~~~~~~~~Dv 67 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGAN---VVLTYNGAAEG-AATAVAEI---------E----K-LGRSALAIKADL 67 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECSSCHH-HHHHHHHH---------H----T-TTSCCEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCCHHH-HHHHHHHH---------H----h-cCCceEEEEcCC
Confidence 57899999999999999999999999876 77664543211 11111111 1 1 335688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~ 243 (614)
++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++++... .+-.++|+
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~ 141 (259)
T 3edm_A 68 TNAA------EVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVT 141 (259)
T ss_dssp TCHH------HHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9976 6666665 6899999998541 13556788999999999999999863 11238999
Q ss_pred EeCceec-cCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEE
Q psy6053 244 ISTAYCH-LQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCL 319 (614)
Q Consensus 244 vST~~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~ 319 (614)
+||..+. ... | ....|+.||+..+.+.+..+. .++.+.
T Consensus 142 isS~~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~I~vn 183 (259)
T 3edm_A 142 FSSQAGRDGGG----------P----------------------------GALAYATSKGAVMTFTRGLAKEVGPKIRVN 183 (259)
T ss_dssp ECCHHHHHCCS----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred EcCHHhccCCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 9998654 111 0 015799999999998887665 349999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.+.||.|..+...... .+ ..... .........+..++|+|++++.++..... -..++++++
T Consensus 184 ~v~PG~v~T~~~~~~~-------~~-~~~~~---------~~~~~p~~r~~~pedva~~v~~L~s~~~~--~itG~~i~v 244 (259)
T 3edm_A 184 AVCPGMISTTFHDTFT-------KP-EVRER---------VAGATSLKREGSSEDVAGLVAFLASDDAA--YVTGACYDI 244 (259)
T ss_dssp EEEECCBCC---------------------------------------CCBCHHHHHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EEEECCCcCccccccc-------Ch-HHHHH---------HHhcCCCCCCcCHHHHHHHHHHHcCcccc--CccCCEEEE
Confidence 9999988665322110 00 00000 01111223456889999999988865432 236889999
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.++
T Consensus 245 dGg 247 (259)
T 3edm_A 245 NGG 247 (259)
T ss_dssp SBC
T ss_pred CCC
Confidence 877
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-16 Score=152.79 Aligned_cols=214 Identities=14% Similarity=0.069 Sum_probs=148.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||++++++|++.|++ |+++.|+. +++++..+ .. ++.++.+|+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~--------------~~-~~~~~~~D~ 58 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGAR---LVACDIEE------GPLREAAE--------------AV-GAHPVVMDV 58 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------TT-TCEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH--------------Hc-CCEEEEecC
Confidence 46799999999999999999999999876 88888863 23333211 11 267889999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 59 ~~~~------~~~~~~~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv 132 (245)
T 1uls_A 59 ADPA------SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIV 132 (245)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 6666654 48999999996432 3567788999999999999888652 2467999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||....+. | ....|+.||+..+.+.+..+. .|+++
T Consensus 133 ~isS~~~~~~-----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 173 (245)
T 1uls_A 133 LTASRVYLGN-----------L----------------------------GQANYAASMAGVVGLTRTLALELGRWGIRV 173 (245)
T ss_dssp EECCGGGGCC-----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEccchhcCC-----------C----------------------------CchhHHHHHHHHHHHHHHHHHHHhHhCeEE
Confidence 9999862111 0 014799999988887766543 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++++||.|..+... .. .+ .......... + ...+...+|+|++++.++..... ...+++++
T Consensus 174 ~~v~PG~v~t~~~~-------~~-~~-~~~~~~~~~~-------p--~~~~~~~~dvA~~v~~l~s~~~~--~~tG~~~~ 233 (245)
T 1uls_A 174 NTLAPGFIETRMTA-------KV-PE-KVREKAIAAT-------P--LGRAGKPLEVAYAALFLLSDESS--FITGQVLF 233 (245)
T ss_dssp EEEEECSBCCTTTS-------SS-CH-HHHHHHHHTC-------T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEeCcCcCcchh-------hc-CH-HHHHHHHhhC-------C--CCCCcCHHHHHHHHHHHhCchhc--CCcCCEEE
Confidence 99999998655321 11 11 1111111110 0 01267899999999988865431 13678888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 234 vdgG 237 (245)
T 1uls_A 234 VDGG 237 (245)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=159.87 Aligned_cols=219 Identities=15% Similarity=0.139 Sum_probs=150.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+++||||+|+||++++++|++.|.+ |+++.|+. +++++..+. ...++.++.+|
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~D 60 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGAT---VIVSDINA------EGAKAAAAS-------------IGKKARAIAAD 60 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECSCH------HHHHHHHHH-------------HCTTEEECCCC
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHHH-------------hCCceEEEEcC
Confidence 367899999999999999999999999875 88888763 233322110 22468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHH----HcCCCce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAK----EMKHLEL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~ 240 (614)
+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+. +.+...+
T Consensus 61 v~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~ 134 (247)
T 3rwb_A 61 ISDPG------SVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGR 134 (247)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcE
Confidence 99876 6666665 68999999997532 35677889999999999988743 3223578
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+..... ....|+.||+..+.+.+..+. +|+
T Consensus 135 iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi 176 (247)
T 3rwb_A 135 VISIASNTFFAGTP--------------------------------------NMAAYVAAKGGVIGFTRALATELGKYNI 176 (247)
T ss_dssp EEEECCTHHHHTCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEECchhhccCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhhhcCe
Confidence 99999986532210 015799999888877766554 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++..++||.|..+.....+. . ....+. .... ....+...+|+|+++..++..... -..+++
T Consensus 177 ~vn~v~PG~v~t~~~~~~~~---~--~~~~~~-~~~~-----------~~~r~~~pedva~~v~~L~s~~~~--~itG~~ 237 (247)
T 3rwb_A 177 TANAVTPGLIESDGVKASPH---N--EAFGFV-EMLQ-----------AMKGKGQPEHIADVVSFLASDDAR--WITGQT 237 (247)
T ss_dssp EEEEEEECSBCCHHHHTSGG---G--GGHHHH-HHHS-----------SSCSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEeeCcCcCccccccCh---h--HHHHHH-hccc-----------ccCCCcCHHHHHHHHHHHhCcccc--CCCCCE
Confidence 99999999986653211100 0 000111 0000 111245789999999988865432 136789
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+++.++
T Consensus 238 i~vdGG 243 (247)
T 3rwb_A 238 LNVDAG 243 (247)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 988876
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=156.11 Aligned_cols=199 Identities=18% Similarity=0.168 Sum_probs=141.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|+||||+|+||++++++|++.|++ |++..|+. +++++..+ .+... ...++.++.+|++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~~----~~~~~~~~~~D~~ 62 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYA---LALGARSV------DRLEKIAH-----ELMQE----QGVEVFYHHLDVS 62 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHH----HCCCEEEEECCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHhh----cCCeEEEEEeccC
Confidence 3689999999999999999999999876 88888864 22322211 11111 2357899999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~v 244 (614)
+++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 63 ~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~ 136 (235)
T 3l77_A 63 KAE------SVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVT 136 (235)
T ss_dssp CHH------HHHHHCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 976 7777765 68999999997532 3567788999999999999988642 123567888
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEee
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLR 322 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvR 322 (614)
||..+.... | ....|+.||+..+.+.+.... .|+++..++
T Consensus 137 sS~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~ 178 (235)
T 3l77_A 137 TSDVSARLI----------P----------------------------YGGGYVSTKWAARALVRTFQIENPDVRFFELR 178 (235)
T ss_dssp CCGGGSSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred ecchhcccC----------C----------------------------CcchHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 877543211 1 125799999999999988643 599999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
||.|-.+.....+ .......++..+|+|++++.++..+.
T Consensus 179 PG~v~T~~~~~~~--------------------------~~~~~~~~~~p~dva~~v~~l~~~~~ 217 (235)
T 3l77_A 179 PGAVDTYFGGSKP--------------------------GKPKEKGYLKPDEIAEAVRCLLKLPK 217 (235)
T ss_dssp ECSBSSSTTTCCS--------------------------CCCGGGTCBCHHHHHHHHHHHHTSCT
T ss_pred CCccccccccccC--------------------------CcccccCCCCHHHHHHHHHHHHcCCC
Confidence 9988554321110 01112256789999999999987654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=160.14 Aligned_cols=228 Identities=14% Similarity=0.074 Sum_probs=152.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||+|+||++++++|++.|.+ |+++.|+. +++++..+ +... ...++.++.+|+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~---------~l~~-~~~~~~~~~~Dv 86 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGVT---VGALGRTR------TEVEEVAD---------EIVG-AGGQAIALEADV 86 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESSH------HHHHHHHH---------HHTT-TTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------HHHh-cCCcEEEEEccC
Confidence 45789999999999999999999999875 88888864 22222211 1111 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHH----HHcCCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLA----KEMKHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la----~~~~~~k~ 240 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++ ++ .+..+
T Consensus 87 ~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~ 159 (283)
T 3v8b_A 87 SDEL------QMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQ-RGGGA 159 (283)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCce
Confidence 9875 6666654 68999999996421 3567788999999999999988 44 35579
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.... +.| ....|+.||+..+.+.+..+. +|+
T Consensus 160 Iv~isS~~~~~~~--------~~~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI 203 (283)
T 3v8b_A 160 IVVVSSINGTRTF--------TTP----------------------------GATAYTATKAAQVAIVQQLALELGKHHI 203 (283)
T ss_dssp EEEECCSBTTTBC--------CST----------------------------TCHHHHHHHHHHHHHHHHHHHHTTTTTE
T ss_pred EEEEcChhhccCC--------CCC----------------------------CchHHHHHHHHHHHHHHHHHHHhCccCc
Confidence 9999998653210 000 015799999999998887664 589
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCcc--ccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGY--ADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~--~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
++..++||.|..+...... ..+.. ............... ..+...+|+|++++.++..... -..+
T Consensus 204 ~vn~v~PG~v~T~~~~~~~------~~~~~-----~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~--~itG 270 (283)
T 3v8b_A 204 RVNAVCPGAIETNISDNTK------LRHEE-----ETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERAR--HVTG 270 (283)
T ss_dssp EEEEEEECSBSSCTTCCTT------BCCHH-----HHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGT--TCCS
T ss_pred EEEEEEeCCCcCCcccccc------cccch-----hhhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCcccc--CCcC
Confidence 9999999999665432110 00000 000000000000001 2356779999999988765432 1368
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.+|
T Consensus 271 ~~i~vdGG 278 (283)
T 3v8b_A 271 SPVWIDGG 278 (283)
T ss_dssp CEEEESTT
T ss_pred CEEEECcC
Confidence 88988776
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=161.47 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=152.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|++ |+++.|+. +++++..+ .+..... ...++.++.+|+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~~~~--~~~~~~~~~~Dv 67 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGAN---VTITGRSS------ERLEETRQ-----IILKSGV--SEKQVNSVVADV 67 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHTTTC--CGGGEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHHcCC--CCcceEEEEecC
Confidence 56899999999999999999999999875 88888864 22222211 1111000 112689999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCC
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------F----DEALKKAVLLNTRGTKMMLSLAKEM---KHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~ 238 (614)
++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~- 140 (280)
T 1xkq_A 68 TTED------GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK- 140 (280)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-
Confidence 9865 6666654 6899999999643 1 2457788999999999999988752 13
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+..... | ....|+.||+..|.+.+..+. .
T Consensus 141 g~iv~isS~~~~~~~~---------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~ 183 (280)
T 1xkq_A 141 GEIVNVSSIVAGPQAQ---------P----------------------------DFLYYAIAKAALDQYTRSTAIDLAKF 183 (280)
T ss_dssp CEEEEECCGGGSSSCC---------C----------------------------SSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEecCccccCCCC---------C----------------------------cccHHHHHHHHHHHHHHHHHHHhccC
Confidence 7999999986543210 0 014799999999998877653 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCch-----HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh-hh
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGP-----TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY-LS 388 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~-----~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~-~~ 388 (614)
|+++++++||.|.++...... .... .......... .....+...+|+|++++.++... ..
T Consensus 184 gi~v~~v~PG~v~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~p~~~~~~pedvA~~v~~l~s~~~~~ 249 (280)
T 1xkq_A 184 GIRVNSVSPGMVETGFTNAMG-----MPDQASQKFYNFMASHKEC---------IPIGAAGKPEHIANIILFLADRNLSF 249 (280)
T ss_dssp TCEEEEEEECCBCSSHHHHTT-----CCHHHHHHHHHHHHHCTTT---------CTTSSCBCHHHHHHHHHHHHCHHHHT
T ss_pred CeEEEEEeeCcCcCCcccccc-----cccccccchHHHHHHHHcC---------CCCCCCCCHHHHHHHHHHhcCccccc
Confidence 899999999999775321100 0000 0111111111 11124788999999999888654 21
Q ss_pred cCCCCccEEEeccC
Q psy6053 389 QKEHRQSIVHLTSS 402 (614)
Q Consensus 389 ~~~~~~~vyni~~~ 402 (614)
-..++++++.++
T Consensus 250 --~~tG~~i~vdgG 261 (280)
T 1xkq_A 250 --YILGQSIVADGG 261 (280)
T ss_dssp --TCCSCEEEESTT
T ss_pred --CccCCeEEECCC
Confidence 136789999877
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=156.80 Aligned_cols=241 Identities=13% Similarity=0.102 Sum_probs=158.9
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc------CHHHHHHHHHhChhhHHhhhhccccc
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK------NARQRIEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~------~~~~Rl~~~~~~~~f~~l~~~~p~~~ 168 (614)
.+...+++|+++||||+|+||++++++|++.|.+ |+++.|.+... ...+++++..+ .+. . .
T Consensus 21 ~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~---V~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~ 87 (299)
T 3t7c_A 21 SMAGKVEGKVAFITGAARGQGRSHAITLAREGAD---IIAIDVCKQLDGVKLPMSTPDDLAETVR-----QVE----A-L 87 (299)
T ss_dssp -CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEECCSCCTTCCSCCCCHHHHHHHHH-----HHH----H-T
T ss_pred ccccccCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEecccccccccccccCHHHHHHHHH-----HHH----h-c
Confidence 3445578999999999999999999999999876 88888874211 01233333221 111 1 3
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHH
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAK 233 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~ 233 (614)
..++.++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++.
T Consensus 88 ~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 161 (299)
T 3t7c_A 88 GRRIIASQVDVRDFD------AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAI 161 (299)
T ss_dssp TCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 357899999999876 6666654 68999999996431 35677899999999999999875
Q ss_pred Hc----CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHH
Q psy6053 234 EM----KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVV 309 (614)
Q Consensus 234 ~~----~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~ 309 (614)
.. ++..++|++||..+..... ....|+.||+..+.+.+
T Consensus 162 ~~~~~~~~~g~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~ 203 (299)
T 3t7c_A 162 PHIMAGKRGGSIVFTSSIGGLRGAE--------------------------------------NIGNYIASKHGLHGLMR 203 (299)
T ss_dssp HHHHHTTSCEEEEEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEECChhhccCCC--------------------------------------CcchHHHHHHHHHHHHH
Confidence 42 2356899999986542210 01579999999988887
Q ss_pred HHhh----CCCCEEEeecceeecccCCCCcc---ccCCCC--chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHH
Q psy6053 310 EAMN----NGMPCLMLRPSIIIPVWREPLPG---WTDNIN--GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIF 380 (614)
Q Consensus 310 ~~~~----~glp~~IvRp~~I~g~~~~p~~g---w~d~~~--g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii 380 (614)
..+. .|+.+..++||.|..+.....+. +..... ........... ... ....+...+|+|++++
T Consensus 204 ~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~p~r~~~pedvA~~v~ 275 (299)
T 3t7c_A 204 TMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQ-------MHV-LPIPYVEPADISNAIL 275 (299)
T ss_dssp HHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHH-------HSS-SSCSCBCHHHHHHHHH
T ss_pred HHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHHhhh-------hcc-cCcCCCCHHHHHHHHH
Confidence 7654 58999999999997764321100 000000 00000000000 000 0134678999999999
Q ss_pred HHHHhhhhcCCCCccEEEeccC
Q psy6053 381 VAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 381 ~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.++..... -..+.++++.+|
T Consensus 276 fL~s~~a~--~itG~~i~vdGG 295 (299)
T 3t7c_A 276 FLVSDDAR--YITGVSLPVDGG 295 (299)
T ss_dssp HHHSGGGT--TCCSCEEEESTT
T ss_pred HHhCcccc--cCcCCEEeeCCC
Confidence 98865432 136889999877
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=159.46 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=138.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+||||||+|+||++++++|++.|.+ |+++.|+. +++++..+ .+. . ...++.++.+|+
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~----~-~~~~~~~~~~D~ 87 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGAR---VVLTARDV------EKLRAVER-----EIV----A-AGGEAESHACDL 87 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----H-TTCEEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHH----H-hCCceeEEEecC
Confidence 57899999999999999999999999875 88888864 22222211 111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.+++ .+|+|||+||... -.+.++..+++|+.|+.++++.+... .+..++
T Consensus 88 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~i 161 (262)
T 3rkr_A 88 SHSD------AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHI 161 (262)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceE
Confidence 9876 6666654 4899999999721 13557788999999999998886541 356799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..|.+++..+. .|++
T Consensus 162 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~ 203 (262)
T 3rkr_A 162 INISSLAGKNPVA--------------------------------------DGAAYTASKWGLNGLMTSAAEELRQHQVR 203 (262)
T ss_dssp EEECSSCSSCCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEEechhhcCCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 9999987642210 015799999999988876654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+.+++||.|..+..... . .......++..+|+|++++.++....
T Consensus 204 v~~v~PG~v~t~~~~~~-----------------~---------~~~~~~~~~~p~dvA~~v~~l~s~~~ 247 (262)
T 3rkr_A 204 VSLVAPGSVRTEFGVGL-----------------S---------AKKSALGAIEPDDIADVVALLATQAD 247 (262)
T ss_dssp EEEEEECCC------------------------------------------CCCHHHHHHHHHHHHTCCT
T ss_pred EEEEecCCCcCCccccc-----------------c---------cccccccCCCHHHHHHHHHHHhcCcc
Confidence 99999998855421100 0 01112345789999999998886543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-16 Score=158.84 Aligned_cols=222 Identities=10% Similarity=0.036 Sum_probs=156.4
Q ss_pred ccCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.+++|+|+||||+| +||++++++|++.|.+ |+++.|+... .++++++.+ ...++.++.
T Consensus 27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~---V~~~~r~~~~---~~~~~~~~~--------------~~~~~~~~~ 86 (296)
T 3k31_A 27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE---VALTYLSETF---KKRVDPLAE--------------SLGVKLTVP 86 (296)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE---EEEEESSGGG---HHHHHHHHH--------------HHTCCEEEE
T ss_pred ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE---EEEEeCChHH---HHHHHHHHH--------------hcCCeEEEE
Confidence 36789999999998 9999999999999876 8888887432 333433321 113467899
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-KH 237 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~ 237 (614)
+|+++++ +++.+++ ++|++||+||.... .+.+...+++|+.|+.++++.+... ..
T Consensus 87 ~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 160 (296)
T 3k31_A 87 CDVSDAE------SVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN 160 (296)
T ss_dssp CCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT
T ss_pred cCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999976 6766664 57999999997532 3457788999999999999998763 22
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
-.++|++||..+..... ....|+.||+..+.+.+..+.
T Consensus 161 ~g~IV~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~e~~~ 202 (296)
T 3k31_A 161 GGSILTLSYYGAEKVVP--------------------------------------HYNVMGVCKAALEASVKYLAVDLGK 202 (296)
T ss_dssp CEEEEEEECGGGTSCCT--------------------------------------TTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEehhhccCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHHhh
Confidence 35899999986542210 015799999999988877654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+|+++..++||.|..+..... .............. ....+...+|+|++++.++..... -..
T Consensus 203 ~gIrvn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------p~~r~~~pedvA~~v~fL~s~~a~--~it 264 (296)
T 3k31_A 203 QQIRVNAISAGPVRTLASSGI-------SDFHYILTWNKYNS---------PLRRNTTLDDVGGAALYLLSDLGR--GTT 264 (296)
T ss_dssp TTEEEEEEEECCCCCSSCCSC-------HHHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT--TCC
T ss_pred cCcEEEEEEECCCcCchhhcc-------cchHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCCccC--Ccc
Confidence 589999999999977643211 11111222211111 112356789999999998865432 236
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.++
T Consensus 265 G~~i~vdGG 273 (296)
T 3k31_A 265 GETVHVDCG 273 (296)
T ss_dssp SCEEEESTT
T ss_pred CCEEEECCC
Confidence 889999887
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=158.14 Aligned_cols=235 Identities=14% Similarity=0.109 Sum_probs=153.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|+.. ++++..+ .+....+ ..++..+.+|+
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~~~---~~~~~~~~~D~ 70 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGAN---VLINGRREE------NVNETIK-----EIRAQYP---DAILQPVVADL 70 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSHH------HHHHHHH-----HHHHHCT---TCEEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHhhCC---CceEEEEecCC
Confidence 57899999999999999999999999876 888888642 2222111 1222222 25788999999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST 246 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++.+.+... .+..++|++||
T Consensus 71 ~~~~------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS 144 (267)
T 3t4x_A 71 GTEQ------GCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIAS 144 (267)
T ss_dssp TSHH------HHHHHHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECC
T ss_pred CCHH------HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 9865 6666665 78999999997532 3567778999999977776655431 35679999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+..... ....|+.||+..+.+.+..+. +|+++..++
T Consensus 145 ~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~ 186 (267)
T 3t4x_A 145 EAAIMPSQ--------------------------------------EMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIM 186 (267)
T ss_dssp GGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred hhhccCCC--------------------------------------cchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 87642210 015799999999999887765 579999999
Q ss_pred cceeecccCCCCc-cccCC-CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 323 PSIIIPVWREPLP-GWTDN-INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 323 p~~I~g~~~~p~~-gw~d~-~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
||.|..+...... ....+ ...+............ .......+..++|+|++++.++..... -..++++++.
T Consensus 187 PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~~~pedvA~~v~fL~s~~~~--~itG~~i~vd 259 (267)
T 3t4x_A 187 PGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENR-----PTSIIQRLIRPEEIAHLVTFLSSPLSS--AINGSALRID 259 (267)
T ss_dssp ECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHC-----TTCSSCSCBCTHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred CCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccC-----CcccccCccCHHHHHHHHHHHcCcccc--CccCCeEEEC
Confidence 9988654211000 00000 0001111111111000 011123578899999999988865432 2368899998
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
+|
T Consensus 260 GG 261 (267)
T 3t4x_A 260 GG 261 (267)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=158.71 Aligned_cols=222 Identities=14% Similarity=0.092 Sum_probs=147.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+++||||+|+||++++++|++.|.+ |++..+.... ..+.+.+.+. . ...++.++.+|+
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~---Vv~~~~~~~~--~~~~~~~~~~------------~-~~~~~~~~~~Dl 86 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFT---VVINYAGKAA--AAEEVAGKIE------------A-AGGKALTAQADV 86 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCE---EEEEESSCSH--HHHHHHHHHH------------H-TTCCEEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEcCCCHH--HHHHHHHHHH------------h-cCCeEEEEEcCC
Confidence 45899999999999999999999999976 6666554321 1222222111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... ..-.++|++
T Consensus 87 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 160 (267)
T 3u5t_A 87 SDPA------AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINM 160 (267)
T ss_dssp TCHH------HHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 9876 6666654 68999999997532 3557788999999999999888752 223589999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+..+.+.+..+. .|+++..
T Consensus 161 sS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~ 202 (267)
T 3u5t_A 161 STSQVGLLHP--------------------------------------SYGIYAAAKAGVEAMTHVLSKELRGRDITVNA 202 (267)
T ss_dssp CCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEE
T ss_pred eChhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhhhhCCEEEE
Confidence 9986532110 015799999999999887765 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
++||.|..+.... . ........... ......+...+|+|++++.++..... -..++++++.
T Consensus 203 v~PG~v~T~~~~~------~--~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vd 263 (267)
T 3u5t_A 203 VAPGPTATDLFLE------G--KSDEVRDRFAK---------LAPLERLGTPQDIAGAVAFLAGPDGA--WVNGQVLRAN 263 (267)
T ss_dssp EEECCBC-------------------CHHHHHT---------SSTTCSCBCHHHHHHHHHHHHSTTTT--TCCSEEEEES
T ss_pred EEECCCcCccccc------c--CCHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc--CccCCEEEeC
Confidence 9999886543110 0 00001111111 11123467789999999988854331 1367888887
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
+|
T Consensus 264 GG 265 (267)
T 3u5t_A 264 GG 265 (267)
T ss_dssp SS
T ss_pred CC
Confidence 65
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-16 Score=154.06 Aligned_cols=202 Identities=10% Similarity=0.069 Sum_probs=145.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|+||||||+||++++++|++.|++ |+++.|+.... .....++.+|+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~--------------------------~~~~~~~~~D~ 55 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWW---VASIDVVENEE--------------------------ASASVIVKMTD 55 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSCCTT--------------------------SSEEEECCCCS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCE---EEEEeCChhhc--------------------------cCCcEEEEcCC
Confidence 35789999999999999999999999876 88999976431 12456788999
Q ss_pred CCCCCCCCHHHHHHHhc---------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceE
Q psy6053 180 EADELAIKESDRQLLAS---------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||... ..+.++..+++|+.|+.++++.+... .+-.++
T Consensus 56 ~~~~------~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~i 129 (241)
T 1dhr_A 56 SFTE------QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLL 129 (241)
T ss_dssp CHHH------HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEE
Confidence 9865 5665554 6899999999642 23556778999999999999998763 122589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NG 315 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~g 315 (614)
|++||..+..... ....|+.||+..+.+.+..+. .|
T Consensus 130 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~~~g 171 (241)
T 1dhr_A 130 TLAGAKAALDGTP--------------------------------------GMIGYGMAKGAVHQLCQSLAGKNSGMPSG 171 (241)
T ss_dssp EEECCGGGGSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHTSTTSSCCTT
T ss_pred EEECCHHHccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999987643210 015799999999999887654 36
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++++++||.|-.+. ...... .......+|.+|+|++++.++..... ...++
T Consensus 172 i~v~~v~PG~v~T~~-----------------~~~~~~---------~~~~~~~~~~~~vA~~v~~l~~~~~~--~~~G~ 223 (241)
T 1dhr_A 172 AAAIAVLPVTLDTPM-----------------NRKSMP---------EADFSSWTPLEFLVETFHDWITGNKR--PNSGS 223 (241)
T ss_dssp CEEEEEEESCEECHH-----------------HHHHST---------TSCGGGSEEHHHHHHHHHHHHTTTTC--CCTTC
T ss_pred eEEEEEecCcccCcc-----------------ccccCc---------chhhccCCCHHHHHHHHHHHhcCCCc--Cccce
Confidence 999999999874431 111100 11123468899999999988854321 23577
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 224 ~~~v~g~ 230 (241)
T 1dhr_A 224 LIQVVTT 230 (241)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 8888665
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=161.17 Aligned_cols=221 Identities=11% Similarity=0.101 Sum_probs=149.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|+. +++++..+ .+ . ...++.++.+|+
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~~---V~~~~r~~------~~~~~~~~-----~l----~--~~~~~~~~~~Dv 86 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGAR---VFICARDA------EACADTAT-----RL----S--AYGDCQAIPADL 86 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECSCH------HHHHHHHH-----HH----T--TSSCEEECCCCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HH----H--hcCceEEEEeeC
Confidence 56899999999999999999999999875 88888863 22222111 11 1 112688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCC----
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHL---- 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~---- 238 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+.
T Consensus 87 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~ 160 (276)
T 2b4q_A 87 SSEA------GARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENP 160 (276)
T ss_dssp TSHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCC
Confidence 9865 6666654 68999999996432 3567789999999998888776431 133
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCC-chhhhHHHHHHHHHHHhh----
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPN-SYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn-~Y~~SK~~aE~lv~~~~~---- 313 (614)
.++|++||..+..... ... .|+.||+..|.+.+..+.
T Consensus 161 g~iV~isS~~~~~~~~--------------------------------------~~~~~Y~asK~a~~~~~~~la~e~~~ 202 (276)
T 2b4q_A 161 ARVINIGSVAGISAMG--------------------------------------EQAYAYGPSKAALHQLSRMLAKELVG 202 (276)
T ss_dssp EEEEEECCGGGTCCCC--------------------------------------CSCTTHHHHHHHHHHHHHHHHHHHGG
T ss_pred CEEEEECCHHHcCCCC--------------------------------------CCccccHHHHHHHHHHHHHHHHHhcc
Confidence 7999999987643210 013 799999999998877654
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
.|+++++++||.|..+... .+.+ ......... . ......+...+|+|++++.++..... -..
T Consensus 203 ~gI~vn~v~PG~v~T~~~~---~~~~------~~~~~~~~~--~-----~~p~~r~~~p~dvA~~v~~l~s~~~~--~~t 264 (276)
T 2b4q_A 203 EHINVNVIAPGRFPSRMTR---HIAN------DPQALEADS--A-----SIPMGRWGRPEEMAALAISLAGTAGA--YMT 264 (276)
T ss_dssp GTEEEEEEEECCCCSTTTH---HHHH------CHHHHHHHH--H-----TSTTSSCCCHHHHHHHHHHHHSGGGT--TCC
T ss_pred cCeEEEEEEeccCcCcchh---hcch------hHHHHHHhh--c-----CCCCCCcCCHHHHHHHHHHHhCcccc--CCC
Confidence 5899999999988654211 0000 000111110 0 00112367899999999998865431 136
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.++
T Consensus 265 G~~i~vdGG 273 (276)
T 2b4q_A 265 GNVIPIDGG 273 (276)
T ss_dssp SCEEEESTT
T ss_pred CCEEEeCCC
Confidence 788888776
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=157.51 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=145.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||+|+||++++++|++.|.+ |+++.|...... -..+.+|+++
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G~~---V~~~~r~~~~~~----------------------------~~~~~~d~~d 70 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKSWN---TISIDFRENPNA----------------------------DHSFTIKDSG 70 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCCTTS----------------------------SEEEECSCSS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCccccc----------------------------ccceEEEeCC
Confidence 689999999999999999999999876 899999864321 1346788887
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEe
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHIS 245 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vS 245 (614)
++ +++.+++ ++|+|||+||... ..+.++..+++|+.|+.++++++... ..-.++|++|
T Consensus 71 ~~------~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 144 (251)
T 3orf_A 71 EE------EIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTG 144 (251)
T ss_dssp HH------HHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEe
Confidence 55 6666655 4699999999531 23566778999999999999998863 1224899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCCCEE
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGMPCL 319 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~glp~~ 319 (614)
|..+.... | ....|+.||+..|.+++..+. .|+++.
T Consensus 145 S~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~ 186 (251)
T 3orf_A 145 ASAALNRT----------S----------------------------GMIAYGATKAATHHIIKDLASENGGLPAGSTSL 186 (251)
T ss_dssp CGGGGSCC----------T----------------------------TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEE
T ss_pred chhhccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence 98764221 0 015799999999999987654 379999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh-hhhcCCCCccEEE
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA-YLSQKEHRQSIVH 398 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~-~~~~~~~~~~vyn 398 (614)
+++||.|.++. ..... .......+++++|+|++++.++.. ... ...+++++
T Consensus 187 ~v~PG~v~t~~-----------------~~~~~---------~~~~~~~~~~~~dva~~i~~l~~~~~~~--~~tG~~i~ 238 (251)
T 3orf_A 187 GILPVTLDTPT-----------------NRKYM---------SDANFDDWTPLSEVAEKLFEWSTNSDSR--PTNGSLVK 238 (251)
T ss_dssp EEEESCBCCHH-----------------HHHHC---------TTSCGGGSBCHHHHHHHHHHHHHCGGGC--CCTTCEEE
T ss_pred EEecCcCcCcc-----------------hhhhc---------ccccccccCCHHHHHHHHHHHhcCcccc--CCcceEEE
Confidence 99999875432 11111 122334678999999999999877 321 23678888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 239 v~~g 242 (251)
T 3orf_A 239 FETK 242 (251)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8776
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=161.79 Aligned_cols=217 Identities=13% Similarity=0.109 Sum_probs=151.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||||+||++++++|++.|.+ |+++.|+. ++++++.+ + ...++.++.+|
T Consensus 27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~---Vi~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D 84 (281)
T 3ppi_A 27 QFEGASAIVSGGAGGLGEATVRRLHADGLG---VVIADLAA------EKGKALAD---------E----LGNRAEFVSTN 84 (281)
T ss_dssp GGTTEEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HCTTEEEEECC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCh------HHHHHHHH---------H----hCCceEEEEcC
Confidence 367899999999999999999999999875 88888863 23332211 0 22478999999
Q ss_pred CCCCCCCCCHHHHHHHhc------cccEEEEcccccC-------------hhHHHHHHHHHhHHHHHHHHHHHHHc----
Q psy6053 179 AEADELAIKESDRQLLAS------EVDIMIHGAATIR-------------FDEALKKAVLLNTRGTKMMLSLAKEM---- 235 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~-------------~~~~~~~~~~~Nv~gt~~ll~la~~~---- 235 (614)
+++++ +++.+++ ++|++||+||... ..+.++..+++|+.|+.++++++...
T Consensus 85 l~~~~------~v~~~~~~~~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 158 (281)
T 3ppi_A 85 VTSED------SVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAA 158 (281)
T ss_dssp TTCHH------HHHHHHHHHTTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred CCCHH------HHHHHHHHHHHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 99866 6666665 6899999955321 12446788999999999999988642
Q ss_pred -----CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH
Q psy6053 236 -----KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE 310 (614)
Q Consensus 236 -----~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~ 310 (614)
.+-.++|++||..+..... ....|+.||+..+.+.+.
T Consensus 159 ~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~ 200 (281)
T 3ppi_A 159 EPRENGERGALVLTASIAGYEGQI--------------------------------------GQTAYAAAKAGVIGLTIA 200 (281)
T ss_dssp CCCTTSCCEEEEEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred cccccCCCeEEEEEecccccCCCC--------------------------------------CCcccHHHHHHHHHHHHH
Confidence 1335899999987643210 015799999988777766
Q ss_pred Hhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 311 AMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 311 ~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
.+. .|+++..++||.|..+... .. . .........+. .....+..++|+|++++.++.+.
T Consensus 201 la~e~~~~gi~v~~v~PG~v~T~~~~-------~~-~-~~~~~~~~~~~--------~~~~~~~~pedvA~~v~~l~s~~ 263 (281)
T 3ppi_A 201 AARDLSSAGIRVNTIAPGTMKTPIME-------SV-G-EEALAKFAANI--------PFPKRLGTPDEFADAAAFLLTNG 263 (281)
T ss_dssp HHHHHGGGTEEEEEEEECSBCCHHHH-------TT-C-HHHHHHHHHTC--------CSSSSCBCHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcCeEEEEEecCcCCchhhh-------cc-c-HHHHHHHHhcC--------CCCCCCCCHHHHHHHHHHHHcCC
Confidence 544 5899999999988654321 11 1 11222222211 11134678999999999998753
Q ss_pred hhcCCCCccEEEeccC
Q psy6053 387 LSQKEHRQSIVHLTSS 402 (614)
Q Consensus 387 ~~~~~~~~~vyni~~~ 402 (614)
. ..++++++.++
T Consensus 264 ~----~tG~~i~vdGG 275 (281)
T 3ppi_A 264 Y----INGEVMRLDGA 275 (281)
T ss_dssp S----CCSCEEEESTT
T ss_pred C----cCCcEEEECCC
Confidence 3 37889999887
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-16 Score=154.34 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=149.2
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..+++|+|+||||+|+||++++++|++.|.+ |+++.|+. +++++..+ .+... ...++.++.+
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~~----~~~~~~~~~~ 69 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGAT---VILLGRNE------EKLRQVAS-----HINEE----TGRQPQWFIL 69 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHH----HSCCCEEEEC
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHhh----cCCCceEEEE
Confidence 3478999999999999999999999999875 88888863 22222211 11111 1236788999
Q ss_pred CC--CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CC
Q psy6053 178 DA--EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KH 237 (614)
Q Consensus 178 Dl--~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~ 237 (614)
|+ ++++ +.+.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+
T Consensus 70 D~~~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~ 143 (252)
T 3f1l_A 70 DLLTCTSE------NCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD 143 (252)
T ss_dssp CTTTCCHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS
T ss_pred ecccCCHH------HHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC
Confidence 99 6543 5665554 6899999999642 1 3556788999999999999988431 35
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---C
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---N 314 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~ 314 (614)
..++|++||..+.... | ....|+.||+..+.+.+..+. .
T Consensus 144 ~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~l~~~la~e~~~ 185 (252)
T 3f1l_A 144 AGSLVFTSSSVGRQGR----------A----------------------------NWGAYAASKFATEGMMQVLADEYQQ 185 (252)
T ss_dssp SCEEEEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECChhhccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhcC
Confidence 6799999998653221 0 015799999999998887765 2
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
.+.+..+.||.|-.+. ...... ......+...+|+|++++.++..... -..+
T Consensus 186 ~irvn~v~PG~v~t~~-----------------~~~~~~---------~~~~~~~~~p~dva~~~~~L~s~~~~--~itG 237 (252)
T 3f1l_A 186 RLRVNCINPGGTRTAM-----------------RASAFP---------TEDPQKLKTPADIMPLYLWLMGDDSR--RKTG 237 (252)
T ss_dssp TCEEEEEECCSBSSHH-----------------HHHHCT---------TCCGGGSBCTGGGHHHHHHHHSGGGT--TCCS
T ss_pred CcEEEEEecCcccCch-----------------hhhhCC---------ccchhccCCHHHHHHHHHHHcCcccc--CCCC
Confidence 4888889888774321 111111 11123466789999999988865432 2368
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.+|
T Consensus 238 ~~i~vdgG 245 (252)
T 3f1l_A 238 MTFDAQPG 245 (252)
T ss_dssp CEEESSCC
T ss_pred CEEEeCCC
Confidence 89999887
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=158.96 Aligned_cols=209 Identities=13% Similarity=0.111 Sum_probs=145.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||||+||++++++|++.|.+ |+++.|+... .+.+.++.+|+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~~~---------------------------~~~~~~~~~Dl 68 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAGDK---VAITYRSGEP---------------------------PEGFLAVKCDI 68 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSSCC---------------------------CTTSEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCChHh---------------------------hccceEEEecC
Confidence 56899999999999999999999999875 8888886532 12367899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 69 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv 142 (253)
T 2nm0_A 69 TDTE------QVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVV 142 (253)
T ss_dssp TSHH------HHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9866 6666655 47999999997532 2456788999999999999877542 2457999
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... . ...|+.||+..+.+.+..+. .|+++
T Consensus 143 ~isS~~~~~~~~--------------------------------~------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 184 (253)
T 2nm0_A 143 LISSVVGLLGSA--------------------------------G------QANYAASKAGLVGFARSLARELGSRNITF 184 (253)
T ss_dssp EECCCCCCCCHH--------------------------------H------HHHHHHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred EECchhhCCCCC--------------------------------C------cHHHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 999986532110 0 04799999999888876554 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++++||.|..+.... + . .......... .....++..+|+|++++.++..... -..+.+++
T Consensus 185 n~v~PG~v~T~~~~~---~-----~-~~~~~~~~~~---------~p~~~~~~p~dvA~~i~~l~s~~~~--~~tG~~i~ 244 (253)
T 2nm0_A 185 NVVAPGFVDTDMTKV---L-----T-DEQRANIVSQ---------VPLGRYARPEEIAATVRFLASDDAS--YITGAVIP 244 (253)
T ss_dssp EEEEECSBCC------------------CHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEeCcCcCcchhh---c-----C-HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc--CCcCcEEE
Confidence 999999885543210 0 0 0000111111 0112367899999999988865432 13678888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 245 vdGG 248 (253)
T 2nm0_A 245 VDGG 248 (253)
T ss_dssp ESTT
T ss_pred ECCc
Confidence 8776
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=156.70 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=145.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||||+||++++++|++.|++ |+++.|+... +.+. . ++.++.+|+++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~---V~~~~r~~~~------~~~~----------------~--~~~~~~~D~~~ 54 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYR---VAIASRNPEE------AAQS----------------L--GAVPLPTDLEK 54 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCHH------HHHH----------------H--TCEEEECCTTT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCHHH------HHHh----------------h--CcEEEecCCch
Confidence 589999999999999999999999875 8899987521 1110 1 26778999998
Q ss_pred CCCCCCHHHHHHH-------hccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 182 DELAIKESDRQLL-------ASEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l-------~~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
+ +.+.+ ..++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 55 -~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~i 127 (239)
T 2ekp_A 55 -D------DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFI 127 (239)
T ss_dssp -S------CHHHHHHHHHHHHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred -H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4 33333 2379999999996431 3567788999999999998887431 256899999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... +++ ...|+.||+..|.+.+.... .|+++++
T Consensus 128 sS~~~~~~~~-------~~~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 171 (239)
T 2ekp_A 128 GSVTTFTAGG-------PVP-----------------------------IPAYTTAKTALLGLTRALAKEWARLGIRVNL 171 (239)
T ss_dssp CCGGGTSCCT-------TSC-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CchhhccCCC-------CCC-----------------------------CccHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 9987643210 000 15799999999988877654 4899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+|||.|.++...... ..+ ......... .....+...+|+|++++.++..... -..++++++.
T Consensus 172 v~Pg~v~t~~~~~~~------~~~-~~~~~~~~~---------~p~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~~~vd 233 (239)
T 2ekp_A 172 LCPGYVETEFTLPLR------QNP-ELYEPITAR---------IPMGRWARPEEIARVAAVLCGDEAE--YLTGQAVAVD 233 (239)
T ss_dssp EEECSBCSGGGHHHH------TCH-HHHHHHHTT---------CTTSSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEES
T ss_pred EEeCCccCchhhccc------cCH-HHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhc--CCCCCEEEEC
Confidence 999998765321100 001 111111111 0112367899999999988754331 1367788887
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 234 gG 235 (239)
T 2ekp_A 234 GG 235 (239)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-16 Score=156.84 Aligned_cols=224 Identities=15% Similarity=0.098 Sum_probs=151.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||+|+||++++++|++.|.+ |+++.|+..... +-.+++ .. ...++.++.+|+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~~~~~--~~~~~~---------~~-----~~~~~~~~~~Dv 91 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGAH---VILHGVKPGSTA--AVQQRI---------IA-----SGGTAQELAGDL 91 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSTTTTH--HHHHHH---------HH-----TTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEcCCHHHHH--HHHHHH---------Hh-----cCCeEEEEEecC
Confidence 57899999999999999999999999875 888999764421 111111 10 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 92 ~~~~------~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~ 165 (275)
T 4imr_A 92 SEAG------AGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVS 165 (275)
T ss_dssp TSTT------HHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9987 6666554 68999999996421 3567788999999999999887431 24578999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+..+.+.+..+. +|+++.
T Consensus 166 isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 207 (275)
T 4imr_A 166 IGSINQLRPKS--------------------------------------VVTAYAATKAAQHNLIQSQARDFAGDNVLLN 207 (275)
T ss_dssp ECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCHHhCCCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhcccCcEEE
Confidence 99986543110 014599999999888877655 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.++||.|..+...... . ..+ .......... ....-+...+|+|++++.++..... -..++++++
T Consensus 208 ~v~PG~v~T~~~~~~~---~--~~~-~~~~~~~~~~--------~p~~r~~~pedvA~~v~fL~s~~a~--~itG~~i~v 271 (275)
T 4imr_A 208 TLAPGLVDTDRNADRR---A--QDP-EGWDEYVRTL--------NWMGRAGRPEEMVGAALFLASEACS--FMTGETIFL 271 (275)
T ss_dssp EEEESSBCSHHHHHHH---H--HCH-HHHHHHHHHH--------STTCSCBCGGGGHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EEEeccccCccccccc---c--cCh-HHHHHHHhhc--------CccCCCcCHHHHHHHHHHHcCcccC--CCCCCEEEe
Confidence 9999988654211000 0 000 1111111100 0011245689999999988865432 136788888
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.+|
T Consensus 272 dGG 274 (275)
T 4imr_A 272 TGG 274 (275)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=159.54 Aligned_cols=200 Identities=15% Similarity=0.139 Sum_probs=139.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+|+||||||+||++++++|++.|++ |+++.|+. ++++++.+ .++.. ...++.++.+|
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~~----~~~~~~~~~~D 86 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAH---VVVTARSK------ETLQKVVS-----HCLEL----GAASAHYIAGT 86 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHH----TCSEEEEEECC
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHHh----CCCceEEEeCC
Confidence 467899999999999999999999999865 88999864 22222211 11110 12478999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEc-ccccCh------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHG-AATIRF------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~-AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V 242 (614)
+++++ +++.+++ ++|+|||+ |+.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 87 l~d~~------~v~~~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv 160 (286)
T 1xu9_A 87 MEDMT------FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIV 160 (286)
T ss_dssp TTCHH------HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEE
Confidence 99865 5655554 78999999 454321 3556778999999999999887652 1236899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCC
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGM 316 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~gl 316 (614)
++||..+.... | ....|+.||+..|.+++.... .++
T Consensus 161 ~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i 202 (286)
T 1xu9_A 161 VVSSLAGKVAY----------P----------------------------MVAAYSASKFALDGFFSSIRKEYSVSRVNV 202 (286)
T ss_dssp EEEEGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EECCcccccCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHHhhcCCCe
Confidence 99998654321 0 015799999999988765432 489
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
.+++++||.|..+. ......+ ......++.+++|++++.++...
T Consensus 203 ~v~~v~Pg~v~t~~-----------------~~~~~~~---------~~~~~~~~~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 203 SITLCVLGLIDTET-----------------AMKAVSG---------IVHMQAAPKEECALEIIKGGALR 246 (286)
T ss_dssp EEEEEEECCBCCHH-----------------HHHHSCG---------GGGGGCBCHHHHHHHHHHHHHTT
T ss_pred EEEEeecCccCChh-----------------HHHhccc---------cccCCCCCHHHHHHHHHHHHhcC
Confidence 99999999874431 1111111 12235689999999999888653
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=152.52 Aligned_cols=213 Identities=12% Similarity=0.158 Sum_probs=142.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+++||||+|+||++++++|++.|.+ |+++.|+. ++++++.+ + ...++.++.+|++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~Dv~~~ 58 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHK---VIATGRRQ------ERLQELKD---------E----LGDNLYIAQLDVRNR 58 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HCTTEEEEECCTTCH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH---------H----hcCceEEEEcCCCCH
Confidence 57999999999999999999999876 88888863 23332211 0 124688999999986
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
+ +++.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 59 ~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~i 132 (248)
T 3asu_A 59 A------AIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINI 132 (248)
T ss_dssp H------HHHHHHHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred H------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 5 7777765 6899999999642 1 3567788999999999998887631 245799999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... | ....|+.||+..|.+.+..+. .|+++..
T Consensus 133 sS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~ 174 (248)
T 3asu_A 133 GSTAGSWPY----------A----------------------------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTD 174 (248)
T ss_dssp CCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEE
T ss_pred ccchhccCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 998754221 0 015799999999999877654 5899999
Q ss_pred eecceeec-ccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 321 LRPSIIIP-VWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 321 vRp~~I~g-~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
++||.|.| +.... ...+..... . ... .....+..+|+|++++.++..... ..+....+
T Consensus 175 v~PG~v~gT~~~~~------~~~~~~~~~----~----~~~----~~~~~~~p~dvA~~v~~l~s~~~~---~~g~~i~v 233 (248)
T 3asu_A 175 IEPGLVGGTEFSNV------RFKGDDGKA----E----KTY----QNTVALTPEDVSEAVWWVSTLPAH---VNINTLEM 233 (248)
T ss_dssp EEECSBCC----------------------------------------CCBCHHHHHHHHHHHHHSCTT---CCCCEEEE
T ss_pred EeccccccCcchhh------cccCchHHH----H----HHH----hccCCCCHHHHHHHHHHHhcCCcc---ceeeEEEE
Confidence 99999974 32110 000000000 0 000 011235889999999998875432 34556665
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.+.
T Consensus 234 ~~~ 236 (248)
T 3asu_A 234 MPV 236 (248)
T ss_dssp CCT
T ss_pred ccc
Confidence 443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=159.74 Aligned_cols=233 Identities=13% Similarity=0.088 Sum_probs=153.8
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..+++|++|||||+|+||++++++|++.|.+ |+++.|.... ..+.+.+.+ + . ...++.++.+
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~---V~~~~~~~~~--~~~~~~~~~--------~----~-~~~~~~~~~~ 75 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAK---VVVNYANSTK--DAEKVVSEI--------K----A-LGSDAIAIKA 75 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHHH--------H----H-TTCCEEEEEC
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEEcCCCHH--HHHHHHHHH--------H----h-cCCcEEEEEc
Confidence 3467899999999999999999999999876 7776665321 112222111 1 1 3357899999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEE
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFV 242 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V 242 (614)
|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... ..-.++|
T Consensus 76 Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv 149 (270)
T 3is3_A 76 DIRQVP------EIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIV 149 (270)
T ss_dssp CTTSHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEE
Confidence 999976 6666665 68999999997542 3567788999999999999998873 2234899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+... +.| ....|+.||+..+.+.+..+. +|+++
T Consensus 150 ~isS~~~~~~---------~~~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v 192 (270)
T 3is3_A 150 LTSSNTSKDF---------SVP----------------------------KHSLYSGSKGAVDSFVRIFSKDCGDKKITV 192 (270)
T ss_dssp EECCTTTTTC---------CCT----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEeCchhccC---------CCC----------------------------CCchhHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 9999753110 000 015799999999988877654 58999
Q ss_pred EEeecceeecccCCCCc-cccCC--CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 319 LMLRPSIIIPVWREPLP-GWTDN--INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~-gw~d~--~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
..++||.|.++...... .+... .............. .....+...+|+|++++.++..... -..++
T Consensus 193 n~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~~L~s~~~~--~itG~ 261 (270)
T 3is3_A 193 NAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHA---------SPLHRNGWPQDVANVVGFLVSKEGE--WVNGK 261 (270)
T ss_dssp EEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHH---------STTCSCBCHHHHHHHHHHHTSGGGT--TCCSC
T ss_pred EEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCCccC--CccCc
Confidence 99999998765321100 00000 01111111111111 1112356799999999988865432 13678
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.+|
T Consensus 262 ~i~vdGG 268 (270)
T 3is3_A 262 VLTLDGG 268 (270)
T ss_dssp EEEESTT
T ss_pred EEEeCCC
Confidence 8988776
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=157.77 Aligned_cols=203 Identities=16% Similarity=0.121 Sum_probs=137.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+|+++||||+|+||++++++|++.|.+ |+++.|.. +++++..+. ...++.++.+|+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~Dv 83 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGYG---VALAGRRL------DALQETAAE-------------IGDDALCVPTDV 83 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHH-------------HTSCCEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH-------------hCCCeEEEEecC
Confidence 56899999999999999999999999875 88888863 233332110 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc---CC--Cc
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM---KH--LE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~--~k 239 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+ -.
T Consensus 84 ~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g 157 (272)
T 4dyv_A 84 TDPD------SVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGG 157 (272)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCc
Confidence 9876 6776665 79999999997421 3567788999999988888876542 11 35
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+..... ....|+.||+..+.+.+..+. +|
T Consensus 158 ~IV~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~g 199 (272)
T 4dyv_A 158 RIINNGSISATSPRP--------------------------------------YSAPYTATKHAITGLTKSTSLDGRVHD 199 (272)
T ss_dssp EEEEECCSSTTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEECchhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhCccC
Confidence 899999986642210 015799999999998877654 58
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+++..++||.|..+...... .+.... ........+..++|+|++++.++..+.
T Consensus 200 I~vn~v~PG~v~T~~~~~~~-----------------~~~~~~--~~~~~~~~~~~pedvA~~v~fL~s~~~ 252 (272)
T 4dyv_A 200 IACGQIDIGNADTPMAQKMK-----------------AGVPQA--DLSIKVEPVMDVAHVASAVVYMASLPL 252 (272)
T ss_dssp EEEEEEEEEECC-------------------------------------------CHHHHHHHHHHHHHSCT
T ss_pred EEEEEEEECcccChhhhhhc-----------------ccchhh--hhcccccCCCCHHHHHHHHHHHhCCCC
Confidence 99999999998665322110 000000 000112236789999999999998765
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=154.24 Aligned_cols=233 Identities=11% Similarity=0.027 Sum_probs=152.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |++..|+.. ++++..+ .+....+ ..++.++.+|+
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~l~~~~~---~~~~~~~~~Dv 68 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGAA---VAFCARDGE------RLRAAES-----ALRQRFP---GARLFASVCDV 68 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHHST---TCCEEEEECCT
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEeCCHH------HHHHHHH-----HHHHhcC---CceEEEEeCCC
Confidence 56899999999999999999999999876 888888632 2222111 1111111 24589999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 142 (265)
T 3lf2_A 69 LDAL------QVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIV 142 (265)
T ss_dssp TCHH------HHHHHHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Confidence 9865 6666554 68999999997432 3567788999999999999988652 2346899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 143 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v 184 (265)
T 3lf2_A 143 CVNSLLASQPEP--------------------------------------HMVATSAARAGVKNLVRSMAFEFAPKGVRV 184 (265)
T ss_dssp EEEEGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCcccCCCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 999986542210 015799999999888876654 58999
Q ss_pred EEeecceeecccCCCCcccc-CCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWT-DNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~-d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
..++||.|.++......... .....+.......... .......+...+|+|++++.++..... -..++++
T Consensus 185 n~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~~r~~~pedvA~~v~fL~s~~~~--~itG~~i 255 (265)
T 3lf2_A 185 NGILIGLVESGQWRRRFEAREERELDWAQWTAQLARN-------KQIPLGRLGKPIEAARAILFLASPLSA--YTTGSHI 255 (265)
T ss_dssp EEEEECSBCCHHHHHHHTC------CHHHHHHHHHHH-------TTCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSEEE
T ss_pred EEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhc-------cCCCcCCCcCHHHHHHHHHHHhCchhc--CcCCCEE
Confidence 99999988665211000000 0000111111111110 001112356789999999988865432 2368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.++
T Consensus 256 ~vdGG 260 (265)
T 3lf2_A 256 DVSGG 260 (265)
T ss_dssp EESSS
T ss_pred EECCC
Confidence 88876
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=150.95 Aligned_cols=223 Identities=15% Similarity=0.171 Sum_probs=151.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++.|.. |+++.+.... ...+..+++ . . ...++.++.+|+
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~---v~~~~~~~~~-~~~~~~~~~---------~----~-~~~~~~~~~~D~ 66 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGAL---VAIHYGNRKE-EAEETVYEI---------Q----S-NGGSAFSIGANL 66 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCSH-HHHHHHHHH---------H----H-TTCEEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe---EEEEeCCchH-HHHHHHHHH---------H----h-cCCceEEEecCc
Confidence 57899999999999999999999999875 6666544321 111211221 1 1 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCC
Q psy6053 180 EADELAIKESDRQLLAS-------------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~ 238 (614)
++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|+.++++.+... .+.
T Consensus 67 ~~~~------~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 140 (255)
T 3icc_A 67 ESLH------GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN 140 (255)
T ss_dssp TSHH------HHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE
T ss_pred CCHH------HHHHHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCC
Confidence 9865 5555443 29999999996421 3456778999999999999998762 233
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. +
T Consensus 141 ~~iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~ 182 (255)
T 3icc_A 141 SRIINISSAATRISL----------P----------------------------DFIAYSMTKGAINTMTFTLAKQLGAR 182 (255)
T ss_dssp EEEEEECCGGGTSCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEeCChhhccCC----------C----------------------------CcchhHHhHHHHHHHHHHHHHHHHhc
Confidence 589999998653321 0 015799999999988876654 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++..++||.|..+..... ............ ......+..++|+|++++.++..... -..+
T Consensus 183 gi~v~~v~PG~v~t~~~~~~-------~~~~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~s~~~~--~~tG 244 (255)
T 3icc_A 183 GITVNAILPGFVKTDMNAEL-------LSDPMMKQYATT---------ISAFNRLGEVEDIADTAAFLASPDSR--WVTG 244 (255)
T ss_dssp TCEEEEEEECCBCCSSSTTT-------TTSHHHHHHHHH---------TSTTSSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CeEEEEEEEeeecccchhhh-------cccHHHHHhhhc---------cCCcCCCCCHHHHHHHHHHHhCcccC--CccC
Confidence 89999999999976543221 111111111111 11123466899999999888754432 2368
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.++
T Consensus 245 ~~i~vdgG 252 (255)
T 3icc_A 245 QLIDVSGG 252 (255)
T ss_dssp CEEEESSS
T ss_pred CEEEecCC
Confidence 89999877
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-16 Score=168.81 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=157.8
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.+-.+++||||||||+||.+++++|++.|.. +|+++.|+.......+++.+.+ . . ...++.++.+
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~--~vvl~~R~~~~~~~~~~l~~~l--------~----~-~g~~v~~~~~ 286 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAP--HLLLVSRSGPDADGAGELVAEL--------E----A-LGARTTVAAC 286 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCS--EEEEEESSGGGSTTHHHHHHHH--------H----H-TTCEEEEEEC
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCCC--EEEEEcCCCCCcHHHHHHHHHH--------H----h-cCCEEEEEEe
Confidence 3456899999999999999999999999864 5889999764322222222111 1 1 2357899999
Q ss_pred CCCCCCCCCCHHHHHHHhccc------cEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 178 DAEADELAIKESDRQLLASEV------DIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~v------d~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
|+++++ ++..+++++ |+|||+||.... .+.++..+++|+.|+.++++++... ++++||++
T Consensus 287 Dv~d~~------~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~ 359 (486)
T 2fr1_A 287 DVTDRE------SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLF 359 (486)
T ss_dssp CTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEE
T ss_pred CCCCHH------HHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEE
Confidence 999866 788887765 999999997542 3456778899999999999999884 78999999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecc
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPS 324 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~ 324 (614)
||..+..... ....|+.+|...+.+..+....|+++++++||
T Consensus 360 SS~a~~~g~~--------------------------------------g~~~Yaaaka~l~~la~~~~~~gi~v~~i~pG 401 (486)
T 2fr1_A 360 SSFASAFGAP--------------------------------------GLGGYAPGNAYLDGLAQQRRSDGLPATAVAWG 401 (486)
T ss_dssp EEHHHHTCCT--------------------------------------TCTTTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred cChHhcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 9985422110 01579999999999887766679999999999
Q ss_pred eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCc
Q psy6053 325 IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQE 404 (614)
Q Consensus 325 ~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~ 404 (614)
.+.+... ........ -.......++.+++++++..++.... . .+.+
T Consensus 402 ~~~~~gm----------------~~~~~~~~------~~~~g~~~i~~e~~a~~l~~~l~~~~------~-~~~v----- 447 (486)
T 2fr1_A 402 TWAGSGM----------------AEGPVADR------FRRHGVIEMPPETACRALQNALDRAE------V-CPIV----- 447 (486)
T ss_dssp CBC----------------------------------CTTTTEECBCHHHHHHHHHHHHHTTC------S-SCEE-----
T ss_pred eeCCCcc----------------cchhHHHH------HHhcCCCCCCHHHHHHHHHHHHhCCC------C-eEEE-----
Confidence 8755310 00000000 01123457899999999999886532 1 1222
Q ss_pred ccccHHHHHHHHhh
Q psy6053 405 WQVSWQEIIDIGKS 418 (614)
Q Consensus 405 ~~it~~e~~~~~~~ 418 (614)
.++.|..+...+..
T Consensus 448 ~~~d~~~~~~~~~~ 461 (486)
T 2fr1_A 448 IDVRWDRFLLAYTA 461 (486)
T ss_dssp CEECHHHHHHHHTS
T ss_pred EeCCHHHHhhhhcc
Confidence 23678887665543
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=151.27 Aligned_cols=193 Identities=17% Similarity=0.225 Sum_probs=136.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|+||||+|+||++++++|++.|.+ |+++.|+. +++++..+ + ...++.++.+|++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~D~~ 59 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQ---VSMMGRRY------QRLQQQEL---------L----LGNAVIGIVADLA 59 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HGGGEEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH---------H----hcCCceEEECCCC
Confidence 4789999999999999999999999875 88888863 23332211 0 1135889999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~v 244 (614)
+++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++.+... .+-.++|++
T Consensus 60 ~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~i 133 (235)
T 3l6e_A 60 HHE------DVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANV 133 (235)
T ss_dssp SHH------HHHHHHHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 865 6666654 57999999997532 3567788999999999998888542 112389999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... . ...|+.||+..+.+.+..+. .|+.+..
T Consensus 134 sS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~ 175 (235)
T 3l6e_A 134 LSSAAQVGKA----------N----------------------------ESLYCASKWGMRGFLESLRAELKDSPLRLVN 175 (235)
T ss_dssp CCEECCSSCS----------S----------------------------HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred eCHHhcCCCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHhhccCCEEEE
Confidence 9986543211 0 14799999999988887664 5899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
++||.|-.+... ... . .....+...+|+|++++.++..+
T Consensus 176 v~PG~v~T~~~~-------~~~----------~----------~~~~~~~~pedvA~~v~~l~~~~ 214 (235)
T 3l6e_A 176 LYPSGIRSEFWD-------NTD----------H----------VDPSGFMTPEDAAAYMLDALEAR 214 (235)
T ss_dssp EEEEEECCCC--------------------------------------CBCHHHHHHHHHHHTCCC
T ss_pred EeCCCccCcchh-------ccC----------C----------CCCcCCCCHHHHHHHHHHHHhCC
Confidence 999988543211 000 0 00114678999999999888643
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=167.78 Aligned_cols=226 Identities=15% Similarity=0.200 Sum_probs=158.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-HHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-EELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+-.+++||||||||+||.+++++|++.|.. +|+++.|+.......+.+ +++ . . ...++.++.+
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~--~vvl~~R~~~~~~~~~~l~~~l---------~----~-~g~~v~~~~~ 319 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAE--RLVLTSRRGPEAPGAAELAEEL---------R----G-HGCEVVHAAC 319 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCS--EEEEEESSGGGSTTHHHHHHHH---------H----T-TTCEEEEEEC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCc--EEEEEecCCcccHHHHHHHHHH---------H----h-cCCEEEEEEe
Confidence 456799999999999999999999999864 588889975332212222 222 1 1 2357999999
Q ss_pred CCCCCCCCCCHHHHHHHhcc--ccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 178 DAEADELAIKESDRQLLASE--VDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
|+++++ +++.++++ +|+|||+||.... .+.++..+++|+.|+.++.+++..+.++++||++||..
T Consensus 320 Dvtd~~------~v~~~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a 393 (511)
T 2z5l_A 320 DVAERD------ALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVT 393 (511)
T ss_dssp CSSCHH------HHHHHHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGG
T ss_pred CCCCHH------HHHHHHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHH
Confidence 999866 78888875 9999999997643 24567789999999999999988743678999999985
Q ss_pred eccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeec
Q psy6053 249 CHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIP 328 (614)
Q Consensus 249 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g 328 (614)
+.... + ....|+.+|+..|.+..+....|+++++++||.+.+
T Consensus 394 ~~~g~----------~----------------------------g~~~YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~ 435 (511)
T 2z5l_A 394 GTWGN----------A----------------------------GQGAYAAANAALDALAERRRAAGLPATSVAWGLWGG 435 (511)
T ss_dssp GTTCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHTTTCCCEEEEECCBCS
T ss_pred hcCCC----------C----------------------------CCHHHHHHHHHHHHHHHHHHHcCCcEEEEECCcccC
Confidence 42211 0 015799999999999987766799999999997732
Q ss_pred ccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccccc
Q psy6053 329 VWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVS 408 (614)
Q Consensus 329 ~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it 408 (614)
. |...+ ... ..+. ......++.+++++++..++.... . .+.+. .+.
T Consensus 436 t------gm~~~---~~~--~~~~-----------~~g~~~l~~e~~a~~l~~al~~~~------~-~v~v~-----~~d 481 (511)
T 2z5l_A 436 G------GMAAG---AGE--ESLS-----------RRGLRAMDPDAAVDALLGAMGRND------V-CVTVV-----DVD 481 (511)
T ss_dssp T------TCCCC---HHH--HHHH-----------HHTBCCBCHHHHHHHHHHHHHHTC------S-EEEEC-----CBC
T ss_pred C------ccccc---ccH--HHHH-----------hcCCCCCCHHHHHHHHHHHHhCCC------C-EEEEE-----eCC
Confidence 2 11111 100 0110 111346889999999999886542 2 22232 257
Q ss_pred HHHHHHHHhh
Q psy6053 409 WQEIIDIGKS 418 (614)
Q Consensus 409 ~~e~~~~~~~ 418 (614)
|..+......
T Consensus 482 ~~~~~~~~~~ 491 (511)
T 2z5l_A 482 WERFAPATNA 491 (511)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhcc
Confidence 8777766543
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=151.46 Aligned_cols=202 Identities=9% Similarity=-0.013 Sum_probs=144.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|.. . +|+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~---V~~~~r~~----------------------------~--------~D~ 44 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTI---VHVASRQT----------------------------G--------LDI 44 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEE---EEEESGGG----------------------------T--------CCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEecCCc----------------------------c--------cCC
Confidence 46899999999999999999999999865 88887752 1 688
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCc
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHISTA 247 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~ 247 (614)
++++ +++++++ ++|++||+||... ..+.++..+++|+.|+.++++.+... .+-.++|++||.
T Consensus 45 ~~~~------~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~ 118 (223)
T 3uce_A 45 SDEK------SVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM 118 (223)
T ss_dssp TCHH------HHHHHHHHHCSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred CCHH------HHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence 8765 6666665 6899999999651 13567788999999999999998763 122489999998
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecce
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSI 325 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~ 325 (614)
.+..... ....|+.||+..|.+.+..+. ..+++..++||.
T Consensus 119 ~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~ 160 (223)
T 3uce_A 119 LSRKVVA--------------------------------------NTYVKAAINAAIEATTKVLAKELAPIRVNAISPGL 160 (223)
T ss_dssp GGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECS
T ss_pred hhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Confidence 6543210 015799999999999988776 349999999999
Q ss_pred eecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 326 IIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 326 I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
|.++....... .....+......+ .....+..++|+|++++.++.... ..++++++.++
T Consensus 161 v~t~~~~~~~~-----~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~~~~l~~~~~----~tG~~i~vdgG 219 (223)
T 3uce_A 161 TKTEAYKGMNA-----DDRDAMYQRTQSH---------LPVGKVGEASDIAMAYLFAIQNSY----MTGTVIDVDGG 219 (223)
T ss_dssp BCSGGGTTSCH-----HHHHHHHHHHHHH---------STTCSCBCHHHHHHHHHHHHHCTT----CCSCEEEESTT
T ss_pred Ccchhhhhcch-----hhHHHHHHHHhhc---------CCCCCccCHHHHHHHHHHHccCCC----CCCcEEEecCC
Confidence 97764321110 0011112222111 112346789999999999887433 37889999887
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=159.25 Aligned_cols=207 Identities=21% Similarity=0.166 Sum_probs=128.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|+||||+|+||++++++|++ |.. |+++.|.. ++++++. ...++.++.+|+
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~---v~~~~r~~------~~~~~~~---------------~~~~~~~~~~D~ 57 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHI---VYALGRNP------EHLAALA---------------EIEGVEPIESDI 57 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSE---EEEEESCH------HHHHHHH---------------TSTTEEEEECCH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCe---EEEEeCCH------HHHHHHH---------------hhcCCcceeccc
Confidence 4579999999999999999999987 654 88888863 2333321 124688899999
Q ss_pred CCCCCCCCHHHHHHH---hccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLL---ASEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l---~~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST 246 (614)
+++.. .+..... ..++|++||+||.... .+.++..+++|+.|+.++++.+... .+ .++|++||
T Consensus 58 ~~~~~---~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS 133 (245)
T 3e9n_A 58 VKEVL---EEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINS 133 (245)
T ss_dssp HHHHH---TSSSCGGGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC-
T ss_pred chHHH---HHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcC
Confidence 87531 0011111 2368999999997532 2456678999999988888776431 12 68999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+..... ....|+.||+..|.+.+..+. .|+++.+++
T Consensus 134 ~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~ 175 (245)
T 3e9n_A 134 GAGNGPHP--------------------------------------GNTIYAASKHALRGLADAFRKEEANNGIRVSTVS 175 (245)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred cccccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 87643210 015799999999998877654 589999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
||.|.++...... +. . +.......++.++|+|++++.++.... .+.+||+.
T Consensus 176 PG~v~t~~~~~~~---~~----------~---------~~~~~~~~~~~p~dvA~~i~~l~~~~~-----~~~~~~i~ 226 (245)
T 3e9n_A 176 PGPTNTPMLQGLM---DS----------Q---------GTNFRPEIYIEPKEIANAIRFVIDAGE-----TTQITNVD 226 (245)
T ss_dssp ECCC--------------------------------------CCGGGSCHHHHHHHHHHHHTSCT-----TEEEEEEE
T ss_pred cCCccCchhhhhh---hh----------h---------hcccccccCCCHHHHHHHHHHHHcCCC-----ccceeeeE
Confidence 9998765321100 00 0 011112347889999999999986543 56788775
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=149.89 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=136.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+||||||+|+||++++++|++.|.+ |+++.|+. +++++..+. ...++.++.+|++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~D~~~~ 59 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKA---TYLTGRSE------SKLSTVTNC-------------LSNNVGYRARDLASH 59 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCC---EEEEESCH------HHHHHHHHT-------------CSSCCCEEECCTTCH
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHHH-------------HhhccCeEeecCCCH
Confidence 67999999999999999999999976 88888863 333333221 235688999999986
Q ss_pred CCCCCHHHHHHHhccc----cEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEEeCcee
Q psy6053 183 ELAIKESDRQLLASEV----DIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHISTAYC 249 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~v----d~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~vST~~~ 249 (614)
+ +++.+++++ |+|||+||.... .+.++..+++|+.|+.++++.+... ++-.++|++||..+
T Consensus 60 ~------~v~~~~~~~~~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~ 133 (230)
T 3guy_A 60 Q------EVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAA 133 (230)
T ss_dssp H------HHHHHHHSCSSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGG
T ss_pred H------HHHHHHHHHhhcCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeccc
Confidence 6 788887765 899999996431 3567788999999999999988663 11238999999866
Q ss_pred ccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecce
Q psy6053 250 HLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSI 325 (614)
Q Consensus 250 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~ 325 (614)
..... ....|+.||+..+.+.+..+. +|+.+..++||.
T Consensus 134 ~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~ 175 (230)
T 3guy_A 134 QQPKA--------------------------------------QESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGG 175 (230)
T ss_dssp TSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECC
T ss_pred CCCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCc
Confidence 43210 015799999999998887665 589999999998
Q ss_pred eecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 326 IIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 326 I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
|..+.... .. .......+.+++|+|++++.++..+
T Consensus 176 v~t~~~~~-----------------~~---------~~~~~~~~~~~~dvA~~i~~l~~~~ 210 (230)
T 3guy_A 176 MATEFWET-----------------SG---------KSLDTSSFMSAEDAALMIHGALANI 210 (230)
T ss_dssp C------------------------------------------CCCHHHHHHHHHHHCCEE
T ss_pred ccChHHHh-----------------cC---------CCCCcccCCCHHHHHHHHHHHHhCc
Confidence 85542110 00 0011235688999999999887543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-16 Score=157.17 Aligned_cols=224 Identities=12% Similarity=0.095 Sum_probs=148.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|... ++++++.+ .+... ...++.++.+|+
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~~---V~~~~r~~~-----~~~~~~~~-----~l~~~----~~~~~~~~~~Dv 83 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYR---VVIHYHNSA-----EAAVSLAD-----ELNKE----RSNTAVVCQADL 83 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTCE---EEEEESSCH-----HHHHHHHH-----HHHHH----STTCEEEEECCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCe---EEEEeCCch-----HHHHHHHH-----HHHhh----cCCceEEEEeec
Confidence 67899999999999999999999999875 888888741 12221111 11100 235788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-----------------hhHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-----------------FDEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-----------------~~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
++++. ..++++.+++ ++|++||+||... ..+.++..+++|+.|+..+++.+...
T Consensus 84 ~~~~~--~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 161 (288)
T 2x9g_A 84 TNSNV--LPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQR 161 (288)
T ss_dssp SCSTT--HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCccC--CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98210 0125555554 6899999999642 12346678999999999999887652
Q ss_pred -C--C------CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHH
Q psy6053 236 -K--H------LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEG 306 (614)
Q Consensus 236 -~--~------~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~ 306 (614)
. + ..++|++||..+.... | ....|+.||+..+.
T Consensus 162 ~~~~~~~~~~~~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~ 203 (288)
T 2x9g_A 162 QKGTNPNCTSSNLSIVNLCDAMVDQPC----------M----------------------------AFSLYNMGKHALVG 203 (288)
T ss_dssp C--------CCCEEEEEECCTTTTSCC----------T----------------------------TCHHHHHHHHHHHH
T ss_pred HhhcCCCCCCCCeEEEEEecccccCCC----------C----------------------------CCchHHHHHHHHHH
Confidence 1 1 4589999998654321 0 01579999998887
Q ss_pred HHHHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccc-eeHHHHHHHHHH
Q psy6053 307 LVVEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADF-LPVDITINGIFV 381 (614)
Q Consensus 307 lv~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~-vpVDdva~aii~ 381 (614)
+.+..+. .|+++++++||.|.++. . + .+. ......... + ...+ ...+|+|++++.
T Consensus 204 l~~~la~e~~~~gI~vn~v~PG~v~t~~-~----~-----~~~-~~~~~~~~~-------p--~~r~~~~pedvA~~v~~ 263 (288)
T 2x9g_A 204 LTQSAALELAPYGIRVNGVAPGVSLLPV-A----M-----GEE-EKDKWRRKV-------P--LGRREASAEQIADAVIF 263 (288)
T ss_dssp HHHHHHHHHGGGTEEEEEEEESSCSCCT-T----S-----CHH-HHHHHHHTC-------T--TTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhccCeEEEEEEeccccCcc-c----c-----ChH-HHHHHHhhC-------C--CCCCCCCHHHHHHHHHH
Confidence 7766544 58999999999997764 1 0 111 111111111 0 0123 678999999999
Q ss_pred HHHhhhhcCCCCccEEEeccC
Q psy6053 382 AIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 382 ~~~~~~~~~~~~~~vyni~~~ 402 (614)
++..... -..+.++++.++
T Consensus 264 l~s~~~~--~itG~~i~vdGG 282 (288)
T 2x9g_A 264 LVSGSAQ--YITGSIIKVDGG 282 (288)
T ss_dssp HHSGGGT--TCCSCEEEESTT
T ss_pred HhCcccc--CccCCEEEECcc
Confidence 8865332 236778888776
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=153.69 Aligned_cols=206 Identities=14% Similarity=0.153 Sum_probs=138.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|+. +++++..+ .++ . ...++.++.+|+
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~-----~l~----~-~~~~~~~~~~Dv 62 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAK---ILLGARRQ------ARIEAIAT-----EIR----D-AGGTALAQVLDV 62 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESSH------HHHHHHHH-----HHH----H-TTCEEEEEECCT
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCcEEEEEcCC
Confidence 35789999999999999999999999876 88888863 22222211 111 1 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+++.+... .+..++|
T Consensus 63 ~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV 136 (264)
T 3tfo_A 63 TDRH------SVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQII 136 (264)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEE
Confidence 9876 6666654 68999999997532 3567788999999999888876531 2457899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLM 320 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~I 320 (614)
++||..+..... ....|+.||+..+.+.+..+. .|+++..
T Consensus 137 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~e~~gIrvn~ 178 (264)
T 3tfo_A 137 NIGSIGALSVVP--------------------------------------TAAVYCATKFAVRAISDGLRQESTNIRVTC 178 (264)
T ss_dssp EECCGGGTCCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EEcCHHHcccCC--------------------------------------CChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999987643210 014799999999998887665 4899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
++||.|..+..... .... ..... ..........+|+|++++.++..+.
T Consensus 179 v~PG~v~T~~~~~~-------~~~~------~~~~~------~~~~~~~~~pedvA~~v~~l~s~~~ 226 (264)
T 3tfo_A 179 VNPGVVESELAGTI-------THEE------TMAAM------DTYRAIALQPADIARAVRQVIEAPQ 226 (264)
T ss_dssp EEECCC------------------------------------------CCCHHHHHHHHHHHHHSCT
T ss_pred EecCCCcCcccccc-------cchh------HHHHH------HhhhccCCCHHHHHHHHHHHhcCCc
Confidence 99998865432110 0000 00000 0001113679999999999987654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=155.54 Aligned_cols=207 Identities=13% Similarity=0.129 Sum_probs=137.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||++|||||+|+||++++++|++.|.+ |+++.|+.. ++++..+ .+... ....+.++.+|+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~~------~~~~~~~-----~~~~~----~~~~~~~~~~Dv 92 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYS---VVITGRRPD------VLDAAAG-----EIGGR----TGNIVRAVVCDV 92 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHH----HSSCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCHH------HHHHHHH-----HHHhc----CCCeEEEEEcCC
Confidence 57899999999999999999999999875 888888642 2222111 11111 123468999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc---CC--Cc
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM---KH--LE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~--~k 239 (614)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++.+.+... .+ -.
T Consensus 93 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g 166 (281)
T 4dry_A 93 GDPD------QVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGG 166 (281)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCc
Confidence 9876 6666654 57999999996421 3567789999999988888776542 11 46
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+..... ....|+.||+..+.+.+..+. +|
T Consensus 167 ~IV~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~g 208 (281)
T 4dry_A 167 RIINNGSISAQTPRP--------------------------------------NSAPYTATKHAITGLTKSTALDGRMHD 208 (281)
T ss_dssp EEEEECCGGGTCCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEECCHHhCCCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhcccC
Confidence 899999986532210 015799999999988877654 58
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
+.+..++||.|..+..... ..+.... ........+.+.+|+|++++.++..+.
T Consensus 209 I~vn~v~PG~v~T~~~~~~-----------------~~~~~~~--~~~~~~~~~~~pedvA~~v~fL~s~~~ 261 (281)
T 4dry_A 209 IACGQIDIGNAATDMTARM-----------------STGVLQA--NGEVAAEPTIPIEHIAEAVVYMASLPL 261 (281)
T ss_dssp EEEEEEEEECBCC------------------------CEEECT--TSCEEECCCBCHHHHHHHHHHHHHSCT
T ss_pred eEEEEEEECcCcChhhhhh-----------------cchhhhh--hhcccccCCCCHHHHHHHHHHHhCCCc
Confidence 9999999998865432110 0000000 000111236789999999999997654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-16 Score=152.95 Aligned_cols=207 Identities=16% Similarity=0.145 Sum_probs=141.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.+++|+++||||||+||++++++|++.|++ |+++.|+. ++++++.+ .++. ...++.++.+|
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~l~~-----~~~~~~~~~~D 64 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAA---VAIAARRV------EKLRALGD-----ELTA-----AGAKVHVLELD 64 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHH-----TTCCEEEEECC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHh-----cCCcEEEEECC
Confidence 357899999999999999999999999876 88888863 22222211 1111 22468899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+ .++
T Consensus 65 v~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~i 137 (247)
T 2jah_A 65 VADRQ------GVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTV 137 (247)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEE
Confidence 99865 6666554 68999999996431 3567788999999999999887642 23 699
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..+.+.+.... .|++
T Consensus 138 v~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 179 (247)
T 2jah_A 138 VQMSSIAGRVNV----------R----------------------------NAAVYQATKFGVNAFSETLRQEVTERGVR 179 (247)
T ss_dssp EEECCGGGTCCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEEccHHhcCCC----------C----------------------------CCcHHHHHHHHHHHHHHHHHHHhcccCcE
Confidence 999998654321 0 015799999988877766543 5999
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+++++||.|..+... ..... . ....... .+ ....+...+|+|++++.++...
T Consensus 180 v~~v~PG~v~T~~~~-------~~~~~-~-~~~~~~~----~~----~~~~~~~pedvA~~v~~l~s~~ 231 (247)
T 2jah_A 180 VVVIEPGTTDTELRG-------HITHT-A-TKEMYEQ----RI----SQIRKLQAQDIAEAVRYAVTAP 231 (247)
T ss_dssp EEEEEECSBSSSGGG-------GCCCH-H-HHHHHHH----HT----TTSCCBCHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCcchh-------cccch-h-hHHHHHh----cc----cccCCCCHHHHHHHHHHHhCCC
Confidence 999999998664321 11111 1 1111110 01 1111478999999999988654
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=154.07 Aligned_cols=224 Identities=14% Similarity=0.049 Sum_probs=153.5
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+|+||||+ |+||.+++++|++.|.+ |+++.|..... ..+.++++.+ . ...++.++.+
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~---v~~~~~~~~~~-~~~~~~~l~~---------~----~~~~~~~~~~ 80 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAA---VAITYASRAQG-AEENVKELEK---------T----YGIKAKAYKC 80 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTSCE---EEECBSSSSSH-HHHHHHHHHH---------H----HCCCEECCBC
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCe---EEEEeCCcchh-HHHHHHHHHH---------h----cCCceeEEec
Confidence 578999999999 89999999999999876 77888775432 1233333211 1 2357899999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..+
T Consensus 81 Dl~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~ 154 (267)
T 3gdg_A 81 QVDSYE------SCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGS 154 (267)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCce
Confidence 999866 6666654 56999999996532 3567788999999999999888321 24568
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMP 317 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp 317 (614)
+|++||..+..... +++ ...|+.||+..+.+++..+. ..+.
T Consensus 155 iv~isS~~~~~~~~-------~~~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~i~ 198 (267)
T 3gdg_A 155 LVITASMSGHIANF-------PQE-----------------------------QTSYNVAKAGCIHMARSLANEWRDFAR 198 (267)
T ss_dssp EEEECCGGGTSCCS-------SSC-----------------------------CHHHHHHHHHHHHHHHHHHHHTTTTCE
T ss_pred EEEEccccccccCC-------CCC-----------------------------CCcchHHHHHHHHHHHHHHHHhccCcE
Confidence 99999986532210 000 15799999999999887765 2378
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+... .. +......... ......+..++|+|++++.++..... -..+.++
T Consensus 199 v~~v~PG~v~t~~~~-------~~--~~~~~~~~~~---------~~~~~r~~~~~dva~~~~~l~s~~~~--~itG~~i 258 (267)
T 3gdg_A 199 VNSISPGYIDTGLSD-------FV--PKETQQLWHS---------MIPMGRDGLAKELKGAYVYFASDAST--YTTGADL 258 (267)
T ss_dssp EEEEEECCEECSCGG-------GS--CHHHHHHHHT---------TSTTSSCEETHHHHHHHHHHHSTTCT--TCCSCEE
T ss_pred EEEEECCccccchhh-------hC--CHHHHHHHHh---------cCCCCCCcCHHHHHhHhheeecCccc--cccCCEE
Confidence 999999988654321 11 1111111111 11223466789999999988864321 1368899
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.+|
T Consensus 259 ~vdgG 263 (267)
T 3gdg_A 259 LIDGG 263 (267)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 99877
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=153.33 Aligned_cols=214 Identities=15% Similarity=0.196 Sum_probs=147.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc-----CHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK-----NARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~-----~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|+.... ..++..+++ . . ...++.+
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~---------~----~-~~~~~~~ 69 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGAN---VALVAKSAEPHPKLPGTIYTAAKEI---------E----E-AGGQALP 69 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTCE---EEEEESCCSCCSSSCCCHHHHHHHH---------H----H-HTSEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECChhhhhhhhHHHHHHHHHH---------H----h-cCCcEEE
Confidence 57899999999999999999999999875 89999986531 111111111 1 1 3357999
Q ss_pred EeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CC
Q psy6053 175 ISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KH 237 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~ 237 (614)
+.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+
T Consensus 70 ~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~ 143 (285)
T 3sc4_A 70 IVGDIRDGD------AVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRD 143 (285)
T ss_dssp EECCTTSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSS
T ss_pred EECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 999999976 6666665 78999999997532 3567788999999999999988763 13
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
..++|++||..+..... .....|+.||+..+.+.+..+.
T Consensus 144 ~g~iv~isS~~~~~~~~-------------------------------------~~~~~Y~asKaal~~~~~~la~e~~~ 186 (285)
T 3sc4_A 144 NPHILTLSPPIRLEPKW-------------------------------------LRPTPYMMAKYGMTLCALGIAEELRD 186 (285)
T ss_dssp SCEEEECCCCCCCSGGG-------------------------------------SCSHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred CcEEEEECChhhccCCC-------------------------------------CCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 46899999986532210 0015799999999988877654
Q ss_pred CCCCEEEeecc-eeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 NGMPCLMLRPS-IIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 ~glp~~IvRp~-~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
+|+.+..++|| .+..+ +....... ......+...+|+|++++.++..... .
T Consensus 187 ~gI~vn~v~PG~~v~t~-----------------~~~~~~~~--------~~~~~r~~~pedvA~~~~~l~s~~~~---~ 238 (285)
T 3sc4_A 187 AGIASNTLWPRTTVATA-----------------AVQNLLGG--------DEAMARSRKPEVYADAAYVVLNKPSS---Y 238 (285)
T ss_dssp GTCEEEEEECSSCBCCH-----------------HHHHHHTS--------CCCCTTCBCTHHHHHHHHHHHTSCTT---C
T ss_pred cCcEEEEEeCCCccccH-----------------HHHhhccc--------cccccCCCCHHHHHHHHHHHhCCccc---c
Confidence 58999999998 34211 11111111 11122356789999999988865431 2
Q ss_pred CccEEEecc
Q psy6053 393 RQSIVHLTS 401 (614)
Q Consensus 393 ~~~vyni~~ 401 (614)
.++++.+.+
T Consensus 239 tG~~i~~dg 247 (285)
T 3sc4_A 239 TGNTLLCED 247 (285)
T ss_dssp CSCEEEHHH
T ss_pred cceEEEEcC
Confidence 455554443
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-15 Score=152.10 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=126.6
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
..++|+|+||||||+||.+++++|++.|.+ |++..|+... ..+.++++ +.. ...++.++.+|
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~---V~~~~r~~~~--~~~~~~~l---------~~~----~~~~~~~~~~D 70 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIM---VVLTCRDVTK--GHEAVEKL---------KNS----NHENVVFHQLD 70 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESCHHH--HHHHHHHH---------HTT----TCCSEEEEECC
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCE---EEEEeCCHHH--HHHHHHHH---------Hhc----CCCceEEEEcc
Confidence 356899999999999999999999999875 8999997422 11112222 111 22479999999
Q ss_pred CCCC-CCCCCHHHHHHHhc-------cccEEEEcccccCh-------------------------------------hHH
Q psy6053 179 AEAD-ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------------------------------------DEA 213 (614)
Q Consensus 179 l~~~-~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------------------------------------~~~ 213 (614)
++++ + .++.+++ ++|++||+||.... .+.
T Consensus 71 l~~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (311)
T 3o26_A 71 VTDPIA------TMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYEL 144 (311)
T ss_dssp TTSCHH------HHHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHH
T ss_pred CCCcHH------HHHHHHHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhh
Confidence 9997 4 4444443 79999999997531 234
Q ss_pred HHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeCceeccCCc---ccccccC-CCCCChhHHHHHHhhcchhHHhhhh
Q psy6053 214 LKKAVLLNTRGTKMMLSLAKEM---KHLELFVHISTAYCHLQEK---VLYEKPY-PPPTDPHKLIERVEMMSEDTVEKRA 286 (614)
Q Consensus 214 ~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST~~~~~~~~---~i~E~~~-~~p~~~~~~~~~~~~~~~~~l~~~~ 286 (614)
++..+++|+.|+.++++.+... .+..++|++||..+..... ...+... +......++-...+...++..+.
T Consensus 145 ~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 222 (311)
T 3o26_A 145 AEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKEN-- 222 (311)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTT--
T ss_pred hhhheeeeeehHHHHHHHhhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhcc--
Confidence 5667999999999988887542 2456999999986533210 0000000 00111111111111110110000
Q ss_pred hhhcCCCC---CchhhhHHHHHHHHHHHhh--CCCCEEEeecceeecc
Q psy6053 287 KEFLGEFP---NSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 287 p~~~~~~p---n~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~I~g~ 329 (614)
..-..++| ..|+.||+..+.+.+..+. .++.+..+.||.|..+
T Consensus 223 ~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~e~~~i~v~~v~PG~v~T~ 270 (311)
T 3o26_A 223 LIETNGWPSFGAAYTTSKACLNAYTRVLANKIPKFQVNCVCPGLVKTE 270 (311)
T ss_dssp CTTTTTCCSSCHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCSBCSG
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhhcCCceEEEecCCceecC
Confidence 00112232 4699999999999988877 4788999999987543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-15 Score=155.75 Aligned_cols=225 Identities=13% Similarity=0.065 Sum_probs=150.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEE-ccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM-RQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv-R~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+||||||+|+||+++++.|++.|.+ |+++. |+. ++++++.+ .+... ...++.++.+|
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~---Vv~~~~r~~------~~~~~~~~-----~l~~~----~~~~~~~~~~D 105 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYA---VCLHYHRSA------AEANALSA-----TLNAR----RPNSAITVQAD 105 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCH------HHHHHHHH-----HHHHH----STTCEEEEECC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEcCCCH------HHHHHHHH-----HHHhh----cCCeEEEEEee
Confidence 57899999999999999999999999876 88888 753 22222211 11101 22478999999
Q ss_pred CCCCCCCCC------------HHHHHHHhc-------cccEEEEcccccCh---------------------hHHHHHHH
Q psy6053 179 AEADELAIK------------ESDRQLLAS-------EVDIMIHGAATIRF---------------------DEALKKAV 218 (614)
Q Consensus 179 l~~~~lGLs------------~~~~~~l~~-------~vd~ViH~AA~v~~---------------------~~~~~~~~ 218 (614)
+++++ ++. .++++.+++ .+|++||+||.... .+.++..+
T Consensus 106 l~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 184 (328)
T 2qhx_A 106 LSNVA-TAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLF 184 (328)
T ss_dssp CSSSC-BCC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHH
T ss_pred CCCch-hccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHH
Confidence 99865 000 013444443 78999999996431 45567789
Q ss_pred HHhHHHHHHHHHHHHHc---CC------CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhh
Q psy6053 219 LLNTRGTKMMLSLAKEM---KH------LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEF 289 (614)
Q Consensus 219 ~~Nv~gt~~ll~la~~~---~~------~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~ 289 (614)
++|+.|+.++++++... .+ ..++|++||..+.... |
T Consensus 185 ~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~~----------~------------------------- 229 (328)
T 2qhx_A 185 GSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL----------L------------------------- 229 (328)
T ss_dssp HHHTHHHHHHHHHHHHHHHHSCGGGSCSCEEEEEECCTTTTSCC----------T-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCCCCcEEEEECchhhccCC----------C-------------------------
Confidence 99999999999887642 23 5789999998654221 0
Q ss_pred cCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCc
Q psy6053 290 LGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTG 365 (614)
Q Consensus 290 ~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~ 365 (614)
....|+.||+..+.+.+..+. .|+.+++++||.|..+. . .. + .......... +. +
T Consensus 230 ---~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~-~-------~~--~-~~~~~~~~~~----p~-~-- 288 (328)
T 2qhx_A 230 ---GYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-------MP--P-AVWEGHRSKV----PL-Y-- 288 (328)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-C-------SC--H-HHHHHHHTTC----TT-T--
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-c-------cc--H-HHHHHHHhhC----CC-C--
Confidence 015799999999988877654 58999999999987653 1 11 1 1222222111 00 0
Q ss_pred cccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 366 YADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 366 ~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.-+...+|+|++++.++..... ...+.++++.++
T Consensus 289 -~r~~~pedvA~~v~~l~s~~~~--~itG~~i~vdGG 322 (328)
T 2qhx_A 289 -QRDSSAAEVSDVVIFLCSSKAK--YITGTCVKVDGG 322 (328)
T ss_dssp -TSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred -CCCCCHHHHHHHHHHHhCcccc--CccCcEEEECCC
Confidence 0356789999999998864331 136788988776
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=148.26 Aligned_cols=212 Identities=15% Similarity=0.149 Sum_probs=142.2
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+.+++|+|+||||+|+||++++++|++.|++ |+++.|+.. ++++..+ .++.. ...++.++.+
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~~----~~~~~~~~~~ 71 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGAS---VVLLGRTEA------SLAEVSD-----QIKSA----GQPQPLIIAL 71 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHT----TSCCCEEEEC
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCE---EEEEecCHH------HHHHHHH-----HHHhc----CCCCceEEEe
Confidence 3467999999999999999999999999875 888888642 2222111 11111 2245677777
Q ss_pred CC--CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CC
Q psy6053 178 DA--EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KH 237 (614)
Q Consensus 178 Dl--~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~ 237 (614)
|+ ++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+.++++.+... .+
T Consensus 72 d~d~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~ 145 (247)
T 3i1j_A 72 NLENATAQ------QYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE 145 (247)
T ss_dssp CTTTCCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred ccccCCHH------HHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 77 5543 5555544 6899999999742 1 3567788999999999999988431 34
Q ss_pred CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 238 LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 238 ~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
..++|++||..+..... ....|+.||+..|.+.+..+.
T Consensus 146 ~~~iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~ 187 (247)
T 3i1j_A 146 DASIAFTSSSVGRKGRA--------------------------------------NWGAYGVSKFATEGLMQTLADELEG 187 (247)
T ss_dssp SEEEEEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEcchhhcCCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhcC
Confidence 57899999986532210 015799999999988876543
Q ss_pred -CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
.++.+..++||.|-.+ +...... ......+...+|+|++++.++..... -.
T Consensus 188 ~~~i~v~~v~PG~v~t~-----------------~~~~~~~---------~~~~~~~~~p~dva~~~~~l~s~~~~--~i 239 (247)
T 3i1j_A 188 VTAVRANSINPGATRTG-----------------MRAQAYP---------DENPLNNPAPEDIMPVYLYLMGPDST--GI 239 (247)
T ss_dssp TSSEEEEEEECCCCSSH-----------------HHHHHST---------TSCGGGSCCGGGGTHHHHHHHSGGGT--TC
T ss_pred CCCeEEEEEecCcccCc-----------------cchhccc---------ccCccCCCCHHHHHHHHHHHhCchhc--cc
Confidence 4788999999877432 1111111 11223456789999999988865432 12
Q ss_pred CccEEEe
Q psy6053 393 RQSIVHL 399 (614)
Q Consensus 393 ~~~vyni 399 (614)
.++++++
T Consensus 240 tG~~i~~ 246 (247)
T 3i1j_A 240 NGQALNA 246 (247)
T ss_dssp CSCEEEC
T ss_pred cCeeecC
Confidence 4555543
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=151.66 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=122.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||||+||++++++|++.|++ |+++.|+. +++++..+ .++ . ...++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~----~-~~~~~~~~~~D~ 65 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTA---IALLDMNR------EALEKAEA-----SVR----E-KGVEARSYVCDV 65 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----T-TTSCEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHH----h-cCCcEEEEEecC
Confidence 56899999999999999999999999876 88888863 22222111 111 1 224688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEccccc-C---h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATI-R---F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v-~---~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++.+++ ++|++||+||.. . + .+.++..+++|+.|+.++++.+... .+..++
T Consensus 66 ~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~i 139 (262)
T 1zem_A 66 TSEE------AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRI 139 (262)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 6665554 689999999865 2 1 3557788999999999999887652 245799
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+.... | ....|+.||+..+.+.+.... .|++
T Consensus 140 v~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 181 (262)
T 1zem_A 140 VNTASMAGVKGP----------P----------------------------NMAAYGTSKGAIIALTETAALDLAPYNIR 181 (262)
T ss_dssp EEECCHHHHSCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHHHhhCeE
Confidence 999998653221 0 014799999888777766543 5899
Q ss_pred EEEeecceeecc
Q psy6053 318 CLMLRPSIIIPV 329 (614)
Q Consensus 318 ~~IvRp~~I~g~ 329 (614)
+.+++||.|..+
T Consensus 182 vn~v~PG~v~t~ 193 (262)
T 1zem_A 182 VNAISPGYMGPG 193 (262)
T ss_dssp EEEEEECSBCSS
T ss_pred EEEEecCCcCcc
Confidence 999999987543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=151.42 Aligned_cols=202 Identities=16% Similarity=0.147 Sum_probs=138.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+++||||+|+||++++++|++.|.+ |+++.|+.. ++++..+ .+....+ ...++.++.+|+
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~---V~~~~r~~~------~~~~~~~-----~~~~~~~--~~~~~~~~~~Dv 68 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGYR---VVLIARSKQ------NLEKVHD-----EIMRSNK--HVQEPIVLPLDI 68 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTCE---EEEEESCHH------HHHHHHH-----HHHHHCT--TSCCCEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE---EEEEECCHH------HHHHHHH-----HHHHhcc--ccCcceEEeccC
Confidence 46899999999999999999999999875 888888642 2222111 1111111 115788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~ 142 (250)
T 3nyw_A 69 TDCT------KADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFN 142 (250)
T ss_dssp TCHH------HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 9865 6666554 68999999997432 3557788999999999999887431 24578999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... + ...|+.||+..+.+.+..+. .|+++.
T Consensus 143 isS~~~~~~~~---------~-----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn 184 (250)
T 3nyw_A 143 VASRAAKYGFA---------D-----------------------------GGIYGSTKFALLGLAESLYRELAPLGIRVT 184 (250)
T ss_dssp ECC-------C---------C-----------------------------TTHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EccHHhcCCCC---------C-----------------------------CcchHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 99986532110 0 15799999998888876654 589999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
.++||.|..+. ...... ......+++.+|+|++++.++..+.
T Consensus 185 ~v~PG~v~T~~-----------------~~~~~~---------~~~~~~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 185 TLCPGWVNTDM-----------------AKKAGT---------PFKDEEMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp EEEESSBCSHH-----------------HHHTTC---------CSCGGGSBCHHHHHHHHHHHHTSCT
T ss_pred EEecCcccCch-----------------hhhcCC---------CcccccCCCHHHHHHHHHHHHcCCC
Confidence 99999874431 111110 1122347899999999999886543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-15 Score=150.42 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=149.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|.. ++++++.. + ...++.++.+|+
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~Dv 60 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGAR---VAVLDKSA------ERLRELEV---------A----HGGNAVGVVGDV 60 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----TBTTEEEEECCT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCE---EEEEeCCH------HHHHHHHH---------H----cCCcEEEEEcCC
Confidence 46899999999999999999999999875 88888863 33333211 1 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------------hHHHHHHHHHhHHHHHHHHHHHHHc--CCC
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------------DEALKKAVLLNTRGTKMMLSLAKEM--KHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~ 238 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++.+... ++-
T Consensus 61 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~ 134 (281)
T 3zv4_A 61 RSLQ------DQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR 134 (281)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 9865 6665554 57999999996431 2346778999999999999987652 112
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CC
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NG 315 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~g 315 (614)
.++|++||..+..... ....|+.||+..+.+.+..+. .+
T Consensus 135 g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~ 176 (281)
T 3zv4_A 135 GSVVFTISNAGFYPNG--------------------------------------GGPLYTATKHAVVGLVRQMAFELAPH 176 (281)
T ss_dssp CEEEEECCGGGTSSSS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEecchhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 5899999986532210 014699999999998887765 34
Q ss_pred CCEEEeecceeecccCCCCccccCC-CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDN-INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~-~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
+.+..+.||.|..+...+....... .............. .....+...+|+|++++.++..+.. .-..+
T Consensus 177 Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~fL~s~~~~-~~itG 246 (281)
T 3zv4_A 177 VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSV---------LPIGRMPALEEYTGAYVFFATRGDS-LPATG 246 (281)
T ss_dssp SEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHT---------CTTSSCCCGGGGSHHHHHHHSTTTS-TTCSS
T ss_pred CEEEEEECCcCcCCcccccccccccccccchhHHHHHHhc---------CCCCCCCCHHHHHHHHHHhhccccc-ccccC
Confidence 9999999998866543221000000 00000011111111 1112356789999999988863221 11368
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.++
T Consensus 247 ~~i~vdGG 254 (281)
T 3zv4_A 247 ALLNYDGG 254 (281)
T ss_dssp CEEEESSS
T ss_pred cEEEECCC
Confidence 89999877
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=150.63 Aligned_cols=212 Identities=20% Similarity=0.218 Sum_probs=146.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-----HHHHHHHHHhChhhHHhhhhccccccCeEE
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-----ARQRIEELFASPLFNLLKSVHGQKIIDKVL 173 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-----~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~ 173 (614)
.++||+||||||+|+||++++++|++.|.+ |+++.|...... ..+-.+++ + . ...++.
T Consensus 42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~---Vvl~~r~~~~~~~l~~~l~~~~~~~---------~----~-~g~~~~ 104 (346)
T 3kvo_A 42 RLAGCTVFITGASRGIGKAIALKAAKDGAN---IVIAAKTAQPHPKLLGTIYTAAEEI---------E----A-VGGKAL 104 (346)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCE---EEEEESCCSCCSSSCCCHHHHHHHH---------H----H-TTCEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHCCCE---EEEEECChhhhhhhHHHHHHHHHHH---------H----h-cCCeEE
Confidence 467899999999999999999999999865 888999865321 11111111 1 1 335789
Q ss_pred EEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---C
Q psy6053 174 PISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---K 236 (614)
Q Consensus 174 ~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~ 236 (614)
++.+|+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .
T Consensus 105 ~~~~Dv~d~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~ 178 (346)
T 3kvo_A 105 PCIVDVRDEQ------QISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKS 178 (346)
T ss_dssp EEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTC
T ss_pred EEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Confidence 9999999876 6666665 78999999996432 3567788999999999999998542 2
Q ss_pred CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---
Q psy6053 237 HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--- 313 (614)
Q Consensus 237 ~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--- 313 (614)
+..++|++||..+..... . .....|+.||+..+.+++..+.
T Consensus 179 ~~g~IV~iSS~~~~~~~~------~------------------------------~~~~~Y~aSKaal~~l~~~la~e~~ 222 (346)
T 3kvo_A 179 KVAHILNISPPLNLNPVW------F------------------------------KQHCAYTIAKYGMSMYVLGMAEEFK 222 (346)
T ss_dssp SSCEEEEECCCCCCCGGG------T------------------------------SSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCHHHcCCCC------C------------------------------CCchHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999986532210 0 0015799999998888877655
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
.|+.+..+.||.+..+. +.... .+ ......+...+|+|++++.++.. .. ...
T Consensus 223 ~gIrvn~v~PG~~i~T~----------------~~~~~-~~--------~~~~~r~~~pedvA~~v~~L~s~-~~--~it 274 (346)
T 3kvo_A 223 GEIAVNALWPKTAIHTA----------------AMDML-GG--------PGIESQCRKVDIIADAAYSIFQK-PK--SFT 274 (346)
T ss_dssp TTCEEEEEECSBCBCCH----------------HHHHH-CC----------CGGGCBCTHHHHHHHHHHHTS-CT--TCC
T ss_pred CCcEEEEEeCCCccccH----------------HHHhh-cc--------ccccccCCCHHHHHHHHHHHHhc-CC--CCC
Confidence 48999999999532220 11111 11 11123356789999999999866 31 124
Q ss_pred ccEE
Q psy6053 394 QSIV 397 (614)
Q Consensus 394 ~~vy 397 (614)
+.++
T Consensus 275 G~~i 278 (346)
T 3kvo_A 275 GNFV 278 (346)
T ss_dssp SCEE
T ss_pred ceEE
Confidence 5555
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=147.48 Aligned_cols=206 Identities=16% Similarity=0.155 Sum_probs=140.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|+..... ..+.+++..+ .+. . ...++.++.+|
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~~~-----~~~----~-~~~~~~~~~~D 70 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGAN---VAIAAKSAVANPKLPGTIHSAAA-----AVN----A-AGGQGLALKCD 70 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCCSCCTTSCCCHHHHHH-----HHH----H-HTSEEEEEECC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCE---EEEEeccchhhhhhHHHHHHHHH-----HHH----h-cCCeEEEEeCC
Confidence 56899999999999999999999999865 889999864311 1111111100 011 1 33578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+.++.+.+... .+..++
T Consensus 71 v~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~i 144 (274)
T 3e03_A 71 IREED------QVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHI 144 (274)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceE
Confidence 99876 6666654 68999999996421 3567788999999999999987652 244689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... . + ....|+.||+..+.+.+..+. +|+.
T Consensus 145 v~isS~~~~~~~~-~------------------------------~-----~~~~Y~asKaal~~l~~~la~e~~~~gI~ 188 (274)
T 3e03_A 145 LTLAPPPSLNPAW-W------------------------------G-----AHTGYTLAKMGMSLVTLGLAAEFGPQGVA 188 (274)
T ss_dssp EECCCCCCCCHHH-H------------------------------H-----HCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEECChHhcCCCC-C------------------------------C-----CCchHHHHHHHHHHHHHHHHHHhhhcCEE
Confidence 9999986532100 0 0 014799999998888876654 5899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+..+.||.+..+.- . .... ......+...+|+|++++.++...
T Consensus 189 vn~v~PG~~v~T~~----------------~-~~~~---------~~~~~~~~~pedvA~~v~~l~s~~ 231 (274)
T 3e03_A 189 INALWPRTVIATDA----------------I-NMLP---------GVDAAACRRPEIMADAAHAVLTRE 231 (274)
T ss_dssp EEEEECSBCBCC---------------------------------CCCGGGSBCTHHHHHHHHHHHTSC
T ss_pred EEEEECCcccccch----------------h-hhcc---------cccccccCCHHHHHHHHHHHhCcc
Confidence 99999984322210 0 0000 111223668899999999988543
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=156.32 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=124.4
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++|+|+||||||+||++++++|++.|.+ |+++.|...... ..+.+++.-. ... ...++.++.+|+
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~---v~~v~r~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~Dv 66 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQ---SFKVYATLRDLKTQGRLWEAARA----------LAC-PPGSLETLQLDV 66 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTC---CEEEEEEESCGGGTHHHHHHHHH----------TTC-CTTSEEEEECCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCc---eEEEEeecCcHHHHHHHHHHhhh----------ccC-CCCceEEEEecC
Confidence 3689999999999999999999999977 666676643322 1121211100 000 125789999999
Q ss_pred CCCCCCCCHHHHHHHhcc-----ccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLASE-----VDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~-----vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
++++ +++.+++. +|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 67 ~d~~------~v~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~i 140 (327)
T 1jtv_A 67 RDSK------SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVT 140 (327)
T ss_dssp TCHH------HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHH------HHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9865 78888764 8999999986421 3467788999999999999986321 256799999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... | ....|+.||+..|.+.+..+. .|+++++
T Consensus 141 sS~~~~~~~----------~----------------------------~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~ 182 (327)
T 1jtv_A 141 GSVGGLMGL----------P----------------------------FNDVYCASKFALEGLCESLAVLLLPFGVHLSL 182 (327)
T ss_dssp EEGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCcccccCC----------C----------------------------CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 998654221 0 015799999999998877654 5899999
Q ss_pred eecceeeccc
Q psy6053 321 LRPSIIIPVW 330 (614)
Q Consensus 321 vRp~~I~g~~ 330 (614)
++||.|..+.
T Consensus 183 v~PG~v~T~~ 192 (327)
T 1jtv_A 183 IECGPVHTAF 192 (327)
T ss_dssp EEECCBCC--
T ss_pred EEeCcccChH
Confidence 9999986553
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-15 Score=148.89 Aligned_cols=218 Identities=16% Similarity=0.161 Sum_probs=141.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++ |+++||||+|+||++++++|++.|.+ |+++.|+. ++++++.+ .+ .. . .++.++.+|
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~---V~~~~r~~------~~~~~~~~-----~~----~~-~-~~~~~~~~D 77 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGWS---LVLTGRRE------ERLQALAG-----EL----SA-K-TRVLPLTLD 77 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HH----TT-T-SCEEEEECC
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----Hh----hc-C-CcEEEEEcC
Confidence 345 89999999999999999999999876 88888863 22332211 01 11 1 468899999
Q ss_pred CCCCCCCCCHHHHHHHhcc-------ccEEEEcccccCh--------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCc-
Q psy6053 179 AEADELAIKESDRQLLASE-------VDIMIHGAATIRF--------DEALKKAVLLNTRGTKMMLSLAKEM---KHLE- 239 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~-------vd~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k- 239 (614)
+++++ +++.++++ +|++||+||.... .+.++..+++|+.|+.++++.+... .+..
T Consensus 78 v~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~ 151 (272)
T 2nwq_A 78 VRDRA------AMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGA 151 (272)
T ss_dssp TTCHH------HHHHHHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99866 77777764 5999999996432 3567788999999988877766421 2456
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+.... | ....|+.||+..|.+.+..+. .|
T Consensus 152 ~IV~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~el~~~g 193 (272)
T 2nwq_A 152 SIVNLGSVAGKWPY----------P----------------------------GSHVYGGTKAFVEQFSLNLRCDLQGTG 193 (272)
T ss_dssp EEEEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred EEEEeCCchhccCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhCccC
Confidence 99999998654211 0 015799999999999987764 58
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++++++||.|.++.... ...+..... ..... ....+..+|+|++++.++..... ..+.
T Consensus 194 Irvn~v~PG~v~T~~~~~------~~~~~~~~~--------~~~~~----~~~~~~pedvA~~v~~l~s~~~~---~~g~ 252 (272)
T 2nwq_A 194 VRVTNLEPGLCESEFSLV------RFGGDQARY--------DKTYA----GAHPIQPEDIAETIFWIMNQPAH---LNIN 252 (272)
T ss_dssp CEEEEEEECSBC--------------------------------------CCCCBCHHHHHHHHHHHHTSCTT---EEEE
T ss_pred eEEEEEEcCCCcCcchhc------ccccchHHH--------HHhhc----cCCCCCHHHHHHHHHHHhCCCcc---Cccc
Confidence 999999999886653210 000000000 00000 01136889999999988864321 2445
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
.+.+..+
T Consensus 253 ~i~v~~~ 259 (272)
T 2nwq_A 253 SLEIMPV 259 (272)
T ss_dssp EEEEEET
T ss_pred eEEEeec
Confidence 5555543
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-16 Score=162.53 Aligned_cols=179 Identities=15% Similarity=0.086 Sum_probs=118.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC----CccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSP----NVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~----~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.|+|+||||+||+|++++..|++.|. ...+|.++++... .++.+... . .+.+ ..+.++ +
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~----~~~~~g~~----~-dl~~-------~~~~~~-~ 66 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA----MKALEGVV----M-ELED-------CAFPLL-A 66 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG----HHHHHHHH----H-HHHT-------TTCTTE-E
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc----hhhccchh----h-hhhc-------cccccc-C
Confidence 47899999999999999999999874 1236888887532 11111100 0 0000 011122 5
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCc-eEEEEeCceeccCCcc
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHISTAYCHLQEKV 255 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~V~vST~~~~~~~~~ 255 (614)
|+.+.. ++.+.++++|+|||+||..+. ..+..+.++.|+.+|++++++|++..+.+ +++++|+... . ..+
T Consensus 67 di~~~~------~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~-~-~~~ 138 (327)
T 1y7t_A 67 GLEATD------DPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN-T-NAL 138 (327)
T ss_dssp EEEEES------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH-H-HHH
T ss_pred CeEecc------ChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh-h-hHH
Confidence 665543 566777899999999997653 34456789999999999999999962244 6676665420 0 001
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
+.++.. ++.+ | .+.|+.||..+|++...+++ .|++++++||++|||+...
T Consensus 139 ~~~~~~-~~~~--------------------p------~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 139 IAYKNA-PGLN--------------------P------RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp HHHHTC-TTSC--------------------G------GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred HHHHHc-CCCC--------------------h------hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 111100 0011 1 15799999999999988776 6999999999999998653
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=157.36 Aligned_cols=219 Identities=14% Similarity=0.083 Sum_probs=146.4
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..+++|+++||||+|.||.++++.|++.|.+ |+++.|+.. .+.+++..+ ..++.++.+
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~---Vvl~~r~~~----~~~l~~~~~---------------~~~~~~~~~ 266 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGAT---VVAIDVDGA----AEDLKRVAD---------------KVGGTALTL 266 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEECGGG----HHHHHHHHH---------------HHTCEEEEC
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCE---EEEEeCCcc----HHHHHHHHH---------------HcCCeEEEE
Confidence 3457899999999999999999999999865 888888643 233332211 013568999
Q ss_pred CCCCCCCCCCHHHHHHHhc--------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCc
Q psy6053 178 DAEADELAIKESDRQLLAS--------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLE 239 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~--------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k 239 (614)
|+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++.+++... .+..
T Consensus 267 Dvtd~~------~v~~~~~~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g 340 (454)
T 3u0b_A 267 DVTADD------AVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGG 340 (454)
T ss_dssp CTTSTT------HHHHHHHHHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTC
T ss_pred ecCCHH------HHHHHHHHHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 999987 6666553 39999999997532 3567788999999999999998873 1456
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHH----hhCC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEA----MNNG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~----~~~g 315 (614)
+||++||..+..... ....|+.||+..+.+.+.. ..+|
T Consensus 341 ~iV~iSS~a~~~g~~--------------------------------------g~~~YaasKaal~~l~~~la~e~~~~g 382 (454)
T 3u0b_A 341 RVIGLSSMAGIAGNR--------------------------------------GQTNYATTKAGMIGLAEALAPVLADKG 382 (454)
T ss_dssp EEEEECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEeChHhCCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 899999986532210 0157999999555555544 3369
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
++++.+.||.|..+.....+.. ....... . .....+...+|+|+++..++..... -..++
T Consensus 383 I~vn~v~PG~v~T~~~~~~~~~------~~~~~~~-~-----------~~l~r~g~pedvA~~v~fL~s~~a~--~itG~ 442 (454)
T 3u0b_A 383 ITINAVAPGFIETKMTEAIPLA------TREVGRR-L-----------NSLFQGGQPVDVAELIAYFASPASN--AVTGN 442 (454)
T ss_dssp CEEEEEEECSBCC----------------CHHHHH-S-----------BTTSSCBCHHHHHHHHHHHHCGGGT--TCCSC
T ss_pred cEEEEEEcCcccChhhhhcchh------hHHHHHh-h-----------ccccCCCCHHHHHHHHHHHhCCccC--CCCCc
Confidence 9999999998865432211100 0000000 0 0111234678999999988764432 23678
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++++.++
T Consensus 443 ~i~vdGG 449 (454)
T 3u0b_A 443 TIRVCGQ 449 (454)
T ss_dssp EEEESSS
T ss_pred EEEECCc
Confidence 8888776
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=148.08 Aligned_cols=226 Identities=13% Similarity=0.070 Sum_probs=149.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEE-ccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM-RQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv-R~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+++||||+|+||++++++|++.|++ |+++. |+. +++++..+ .++.. ...++.++.+|
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~~---V~~~~~r~~------~~~~~~~~-----~l~~~----~~~~~~~~~~D 68 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYA---VCLHYHRSA------AEANALSA-----TLNAR----RPNSAITVQAD 68 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCH------HHHHHHHH-----HHHHH----STTCEEEEECC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEcCCCH------HHHHHHHH-----HHhhh----cCCeeEEEEee
Confidence 56899999999999999999999999876 88888 753 22222211 11101 23578999999
Q ss_pred CCCCCC-----------CCCHHHHHHHhc-------cccEEEEcccccCh---------------------hHHHHHHHH
Q psy6053 179 AEADEL-----------AIKESDRQLLAS-------EVDIMIHGAATIRF---------------------DEALKKAVL 219 (614)
Q Consensus 179 l~~~~l-----------GLs~~~~~~l~~-------~vd~ViH~AA~v~~---------------------~~~~~~~~~ 219 (614)
+++++- +-..++++.+++ .+|++||+||.... .+.++..++
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (291)
T 1e7w_A 69 LSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFG 148 (291)
T ss_dssp CSSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHH
T ss_pred cCCcccccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHH
Confidence 998750 000013444433 78999999996431 455677899
Q ss_pred HhHHHHHHHHHHHHHc---CC------CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhc
Q psy6053 220 LNTRGTKMMLSLAKEM---KH------LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFL 290 (614)
Q Consensus 220 ~Nv~gt~~ll~la~~~---~~------~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~ 290 (614)
+|+.|+.++++++... .+ ..++|++||..+.... |
T Consensus 149 ~N~~g~~~l~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~----------~-------------------------- 192 (291)
T 1e7w_A 149 SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL----------L-------------------------- 192 (291)
T ss_dssp HHTHHHHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC----------T--------------------------
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEechhhcCCC----------C--------------------------
Confidence 9999999999988642 23 4789999998654321 0
Q ss_pred CCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCcc
Q psy6053 291 GEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGY 366 (614)
Q Consensus 291 ~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~ 366 (614)
....|+.||+..+.+.+..+. .|+.+..++||.|..+. + . .+ .......... +-.
T Consensus 193 --~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~-~--------~~-~~~~~~~~~~-------p~~- 251 (291)
T 1e7w_A 193 --GYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-M--------PP-AVWEGHRSKV-------PLY- 251 (291)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-G-S--------CH-HHHHHHHTTC-------TTT-
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc-c-C--------CH-HHHHHHHhhC-------CCC-
Confidence 015799999999888876654 58999999999885442 1 0 11 1111111110 000
Q ss_pred ccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 367 ADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 367 ~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.-+...+|+|++++.++..... -..+.++++.++
T Consensus 252 ~r~~~pedvA~~v~~l~s~~~~--~itG~~i~vdGG 285 (291)
T 1e7w_A 252 QRDSSAAEVSDVVIFLCSSKAK--YITGTCVKVDGG 285 (291)
T ss_dssp TSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHhCCccc--CccCcEEEECCC
Confidence 0256789999999998864331 136778888776
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=145.95 Aligned_cols=167 Identities=19% Similarity=0.113 Sum_probs=120.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHh---hCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILR---KSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~---~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+++|+++||||+|+||++++++|++ .|.+ |+++.|.. +++++..+ .++...+ ..++.++.
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~---V~~~~r~~------~~~~~~~~-----~l~~~~~---~~~~~~~~ 66 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSV---MLVSARSE------SMLRQLKE-----ELGAQQP---DLKVVLAA 66 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE---EEEEESCH------HHHHHHHH-----HHHHHCT---TSEEEEEE
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCe---EEEEeCCH------HHHHHHHH-----HHHhhCC---CCeEEEEe
Confidence 5689999999999999999999999 7765 88888863 22222211 1111111 25789999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---------ccc--EEEEcccccC----------hhHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 177 GDAEADELAIKESDRQLLAS---------EVD--IMIHGAATIR----------FDEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~---------~vd--~ViH~AA~v~----------~~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
+|+++++ +++.+++ ++| ++||+||... -.+.++..+++|+.|+.++++.+...
T Consensus 67 ~Dv~~~~------~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 140 (259)
T 1oaa_A 67 ADLGTEA------GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNA 140 (259)
T ss_dssp CCTTSHH------HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cCCCCHH------HHHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999865 5555543 358 9999999642 13567788999999999999998763
Q ss_pred C-----CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH
Q psy6053 236 K-----HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE 310 (614)
Q Consensus 236 ~-----~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~ 310 (614)
- +..++|++||..+.... | ....|+.||+..+.+.+.
T Consensus 141 ~~~~~~~~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~~~~~ 182 (259)
T 1oaa_A 141 FQDSPGLSKTVVNISSLCALQPY----------K----------------------------GWGLYCAGKAARDMLYQV 182 (259)
T ss_dssp SCCCTTCEEEEEEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCceEEEEcCchhcCCC----------C----------------------------CccHHHHHHHHHHHHHHH
Confidence 1 23579999998764221 0 015799999999999988
Q ss_pred Hhh--CCCCEEEeecceee
Q psy6053 311 AMN--NGMPCLMLRPSIII 327 (614)
Q Consensus 311 ~~~--~glp~~IvRp~~I~ 327 (614)
.+. .++.+..+.||.|-
T Consensus 183 la~e~~~i~vn~v~PG~v~ 201 (259)
T 1oaa_A 183 LAAEEPSVRVLSYAPGPLD 201 (259)
T ss_dssp HHHHCTTEEEEEEECCSBS
T ss_pred HHhhCCCceEEEecCCCcC
Confidence 776 35788888888763
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.4e-15 Score=147.10 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=138.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||||+||++++++|++.|++ |+++.|+.... +.+.++ . . ...++..+ |..
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~~~~---~~~~~l-~--------~-----~~~~~~~~--d~~-- 57 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHT---VACHDESFKQK---DELEAF-A--------E-----TYPQLKPM--SEQ-- 57 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCE---EEECCGGGGSH---HHHHHH-H--------H-----HCTTSEEC--CCC--
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCHHHH---HHHHHH-H--------h-----cCCcEEEE--CHH--
Confidence 68999999999999999999999876 88888875432 122221 1 0 11123333 322
Q ss_pred CCCCCHHHHHHHh-------ccccEEEEccccc-C---h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 183 ELAIKESDRQLLA-------SEVDIMIHGAATI-R---F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~-------~~vd~ViH~AA~v-~---~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
+++.++ .++|++||+||.. . + .+.++..+++|+.|+.++++.+... .+..++|++
T Consensus 58 -------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~i 130 (254)
T 1zmt_A 58 -------EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFI 130 (254)
T ss_dssp -------SHHHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred -------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 233332 3789999999975 2 1 3457788999999999999887531 245799999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... | ....|+.||+..+.+.+..+. .|+.+++
T Consensus 131 sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 172 (254)
T 1zmt_A 131 TSATPFGPW----------K----------------------------ELSTYTSARAGACTLANALSKELGEYNIPVFA 172 (254)
T ss_dssp CCSTTTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCcccccCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 998653221 0 015799999999988877654 5899999
Q ss_pred eecceeecccCCCCc--cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 321 LRPSIIIPVWREPLP--GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 321 vRp~~I~g~~~~p~~--gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++||.|+|+...... ..... .+ .......... + ...+...+|+|++++.++..... ...+.+++
T Consensus 173 v~PG~v~~~~~~~~~~T~~~~~--~~-~~~~~~~~~~-------p--~~~~~~p~dvA~~v~~l~s~~~~--~~tG~~~~ 238 (254)
T 1zmt_A 173 IGPNYLHSEDSPYFYPTEPWKT--NP-EHVAHVKKVT-------A--LQRLGTQKELGELVAFLASGSCD--YLTGQVFW 238 (254)
T ss_dssp EEESSBCCBTCCSSCBHHHHTT--CH-HHHHHHHHHS-------S--SSSCBCHHHHHHHHHHHHTTSCG--GGTTCEEE
T ss_pred EecCccccccccccCCCccccc--Ch-HHHHHHhccC-------C--CCCCcCHHHHHHHHHHHhCcccC--CccCCEEE
Confidence 999999776432100 00000 00 1111111100 0 11256889999999988764321 12678898
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 239 vdgG 242 (254)
T 1zmt_A 239 LAGG 242 (254)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9e-15 Score=146.96 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=120.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|+||++++++|++.|.+ |+++.|+. +++++..+ .++. ...++.++.+|+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~r~~------~~~~~~~~-----~~~~-----~~~~~~~~~~Dv 63 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGAT---VYITGRHL------DTLRVVAQ-----EAQS-----LGGQCVPVVCDS 63 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHH-----HSSEEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH-----HHHH-----cCCceEEEECCC
Confidence 46899999999999999999999999875 88888863 22222211 1111 224788999999
Q ss_pred CCCCCCCCHHHHHHHh--------ccccEEEEccc--cc--------Ch----hHHHHHHHHHhHHHHHHHHHHHHH-c-
Q psy6053 180 EADELAIKESDRQLLA--------SEVDIMIHGAA--TI--------RF----DEALKKAVLLNTRGTKMMLSLAKE-M- 235 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~--------~~vd~ViH~AA--~v--------~~----~~~~~~~~~~Nv~gt~~ll~la~~-~- 235 (614)
++++ +++.++ ..+|++||+|| .. .+ .+.++..+++|+.|+.++.+.+.. +
T Consensus 64 ~~~~------~v~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 137 (260)
T 2qq5_A 64 SQES------EVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMV 137 (260)
T ss_dssp TSHH------HHHHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHG
T ss_pred CCHH------HHHHHHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 9865 555544 35799999994 21 11 245677889999999888776653 1
Q ss_pred -CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-
Q psy6053 236 -KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN- 313 (614)
Q Consensus 236 -~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~- 313 (614)
.+..++|++||..+.... + ...|+.||+..|.+.+..+.
T Consensus 138 ~~~~g~iv~isS~~~~~~~----------~-----------------------------~~~Y~asK~a~~~~~~~la~e 178 (260)
T 2qq5_A 138 PAGQGLIVVISSPGSLQYM----------F-----------------------------NVPYGVGKAACDKLAADCAHE 178 (260)
T ss_dssp GGTCCEEEEECCGGGTSCC----------S-----------------------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEEcChhhcCCC----------C-----------------------------CCchHHHHHHHHHHHHHHHHH
Confidence 245789999998653210 0 14799999999999877653
Q ss_pred ---CCCCEEEeecceeeccc
Q psy6053 314 ---NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 314 ---~glp~~IvRp~~I~g~~ 330 (614)
.|+++++++||.|..+.
T Consensus 179 ~~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 179 LRRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp HGGGTCEEEEEECCCSCTTT
T ss_pred hccCCeEEEEEecCccccHH
Confidence 58999999999986653
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-14 Score=138.76 Aligned_cols=218 Identities=12% Similarity=0.106 Sum_probs=149.6
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+.|+||+++||||++-||+.+++.|++.|.+ |++..|....... . ...++..+.+
T Consensus 7 dlf~GK~alVTGas~GIG~aia~~la~~Ga~---Vv~~~~~~~~~~~---------------------~-~~~~~~~~~~ 61 (242)
T 4b79_A 7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGAE---VVALGLDADGVHA---------------------P-RHPRIRREEL 61 (242)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSTTSTTS---------------------C-CCTTEEEEEC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCHHHHhh---------------------h-hcCCeEEEEe
Confidence 4578999999999999999999999999976 8888887643210 1 3457899999
Q ss_pred CCCCCCCCCCHHHHHHHhc---cccEEEEcccccCh-----hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEEeCc
Q psy6053 178 DAEADELAIKESDRQLLAS---EVDIMIHGAATIRF-----DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHISTA 247 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~vST~ 247 (614)
|+++++ +++++++ ++|++||+||.... .+.++..+++|+.|+..+.+.+..+ ++-.++|.+||.
T Consensus 62 Dv~~~~------~v~~~~~~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~ 135 (242)
T 4b79_A 62 DITDSQ------RLQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASM 135 (242)
T ss_dssp CTTCHH------HHHHHHHHCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCG
T ss_pred cCCCHH------HHHHHHHhcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 999865 6777665 68999999997542 3567889999999999888877553 122589999999
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeec
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRP 323 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp 323 (614)
.+..... ....|+.||+.-..+.+..+. +|+++..+-|
T Consensus 136 ~~~~~~~--------------------------------------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~P 177 (242)
T 4b79_A 136 YSTFGSA--------------------------------------DRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAP 177 (242)
T ss_dssp GGTSCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred cccCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEe
Confidence 7633211 014799999987777665543 7999999999
Q ss_pred ceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 324 SIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 324 ~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
|.|-.+..+. ..........+....+ - --+-..+|+|++++.++..... -..++++++.++
T Consensus 178 G~i~T~m~~~-------~~~~~~~~~~~~~~~P-------l--gR~g~peeiA~~v~fLaSd~a~--~iTG~~l~VDGG 238 (242)
T 4b79_A 178 GWIDTPLGAG-------LKADVEATRRIMQRTP-------L--ARWGEAPEVASAAAFLCGPGAS--FVTGAVLAVDGG 238 (242)
T ss_dssp CSBCCC------------CCCHHHHHHHHHTCT-------T--CSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred CCCCChhhhc-------ccCCHHHHHHHHhcCC-------C--CCCcCHHHHHHHHHHHhCchhc--CccCceEEECcc
Confidence 9885443211 1111112222222110 0 0134568999999888755432 136778887665
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-14 Score=143.65 Aligned_cols=224 Identities=11% Similarity=0.062 Sum_probs=147.0
Q ss_pred cCCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGA--SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGa--TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+++|+|+|||| +|+||++++++|++.|.+ |+++.|+... .++++.+ + ...++.++.+
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~---V~~~~r~~~~-----~~~~~~~---------~----~~~~~~~~~~ 63 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQ---LVLTGFDRLR-----LIQRITD---------R----LPAKAPLLEL 63 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCE---EEEEECSCHH-----HHHHHHT---------T----SSSCCCEEEC
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCE---EEEEecChHH-----HHHHHHH---------h----cCCCceEEEc
Confidence 57899999999 999999999999999875 8888886421 1222211 1 2246788999
Q ss_pred CCCCCCCCCCHHHHHHHhc----------cccEEEEcccccC------------hhHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 178 DAEADELAIKESDRQLLAS----------EVDIMIHGAATIR------------FDEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~----------~vd~ViH~AA~v~------------~~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
|+++++ +++.+++ ++|++||+||... -.+.++..+++|+.|+.++++.+...
T Consensus 64 Dv~~~~------~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 137 (269)
T 2h7i_A 64 DVQNEE------HLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPI 137 (269)
T ss_dssp CTTCHH------HHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred cCCCHH------HHHHHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999865 6666655 7999999999654 13456778999999999999998762
Q ss_pred -CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-
Q psy6053 236 -KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN- 313 (614)
Q Consensus 236 -~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~- 313 (614)
..-.++|++||....+. |. ...|+.||+..+.+.+..+.
T Consensus 138 ~~~~g~iv~iss~~~~~~-----------~~----------------------------~~~Y~asKaa~~~l~~~la~e 178 (269)
T 2h7i_A 138 MNPGGSIVGMDFDPSRAM-----------PA----------------------------YNWMTVAKSALESVNRFVARE 178 (269)
T ss_dssp EEEEEEEEEEECCCSSCC-----------TT----------------------------THHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCeEEEEcCcccccc-----------Cc----------------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 11258999998754211 00 15799999999988877654
Q ss_pred ---CCCCEEEeecceeecccCCCCccccCCCCchH------HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHH
Q psy6053 314 ---NGMPCLMLRPSIIIPVWREPLPGWTDNINGPT------GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIW 384 (614)
Q Consensus 314 ---~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~------~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~ 384 (614)
+|+.+..++||.|-.+... .+........ ......... . + ..+.+...+|+|++++.++.
T Consensus 179 ~~~~gi~vn~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~---p-~~rr~~~p~dvA~~v~~L~s 247 (269)
T 2h7i_A 179 AGKYGVRSNLVAAGPIRTLAMS---AIVGGALGEEAGAQIQLLEEGWDQR----A---P-IGWNMKDATPVAKTVCALLS 247 (269)
T ss_dssp HHTTTCEEEEEEECCCCCHHHH---HHHTTTTCHHHHHHHHHHHHHHHHH----C---T-TCCCTTCCHHHHHHHHHHHS
T ss_pred hcccCcEEEEEecCcccchhhh---ccccccchhhHHHHHHHHHHhhhcc----C---C-cccCCCCHHHHHHHHHHHhC
Confidence 5899999999988543110 0000000000 000001000 0 0 00125567899999998885
Q ss_pred hhhhcCCCCccEEEeccC
Q psy6053 385 AYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 385 ~~~~~~~~~~~vyni~~~ 402 (614)
.... -..++++++.++
T Consensus 248 ~~~~--~itG~~i~vdGG 263 (269)
T 2h7i_A 248 DWLP--ATTGDIIYADGG 263 (269)
T ss_dssp SSCT--TCCSEEEEESTT
T ss_pred chhc--cCcceEEEecCC
Confidence 4321 136778888766
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=148.15 Aligned_cols=211 Identities=15% Similarity=0.194 Sum_probs=137.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC----CcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK----GKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~----~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+++|+|+||||+|+||++++++|++.|.+ |++..|... ..+ .+++++..+ .++. .... +
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~Ga~---Vv~~~~~~~~~~~~R~-~~~~~~~~~-----~l~~-----~~~~---~ 69 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERGAL---VVVNDLGGDFKGVGKG-SSAADKVVE-----EIRR-----RGGK---A 69 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEECCCBCTTSCBCC-SHHHHHHHH-----HHHH-----TTCE---E
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEcCCcccccccCC-HHHHHHHHH-----HHHh-----hCCe---E
Confidence 57899999999999999999999999875 777665321 000 122222111 1111 1112 2
Q ss_pred eCCCCCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCC
Q psy6053 176 SGDAEADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHL 238 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~ 238 (614)
.+|+++.+ +.+.++ .++|++||+||.... .+.++..+++|+.|+.++++++... .+.
T Consensus 70 ~~D~~~~~------~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~ 143 (319)
T 1gz6_A 70 VANYDSVE------AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY 143 (319)
T ss_dssp EEECCCGG------GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 47888865 444433 368999999996532 3567788999999999988887431 255
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+..+.+.+.... .
T Consensus 144 grIV~vsS~~~~~~~----------~----------------------------~~~~Y~aSK~a~~~~~~~la~el~~~ 185 (319)
T 1gz6_A 144 GRIIMTASASGIYGN----------F----------------------------GQANYSAAKLGLLGLANTLVIEGRKN 185 (319)
T ss_dssp EEEEEECCHHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CEEEEECChhhccCC----------C----------------------------CCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 799999997542111 0 015799999999988877654 5
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+.+.+++||.+ .+.. .... + ....+.+..+++|++++.++.... ...+
T Consensus 186 gI~vn~v~PG~~-t~~~-------~~~~-~-------------------~~~~~~~~p~dvA~~~~~l~s~~~---~~tG 234 (319)
T 1gz6_A 186 NIHCNTIAPNAG-SRMT-------ETVM-P-------------------EDLVEALKPEYVAPLVLWLCHESC---EENG 234 (319)
T ss_dssp TEEEEEEEEECC-STTT-------GGGS-C-------------------HHHHHHSCGGGTHHHHHHHTSTTC---CCCS
T ss_pred CEEEEEEeCCCc-cccc-------cccC-C-------------------hhhhccCCHHHHHHHHHHHhCchh---hcCC
Confidence 899999999976 2110 0000 0 011234678999999888875432 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
.+|++.++
T Consensus 235 ~~~~v~GG 242 (319)
T 1gz6_A 235 GLFEVGAG 242 (319)
T ss_dssp CEEEEETT
T ss_pred CEEEECCC
Confidence 78888766
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=153.50 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=129.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
++++|||||+|+||.++++.|++.|.. +|+++.|+.......+.+.+.+. . ...++.++.+|+++
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~--~vvl~~R~~~~~~~~~~l~~~l~------------~-~g~~v~~~~~Dvtd 303 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAA--HLVLTSRRGADAPGAAELRAELE------------Q-LGVRVTIAACDAAD 303 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCS--EEEEEESSGGGSTTHHHHHHHHH------------H-TTCEEEEEECCTTC
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCc--EEEEEeCCCCChHHHHHHHHHHH------------h-cCCeEEEEEccCCC
Confidence 489999999999999999999999864 58888887533322222222111 1 33589999999999
Q ss_pred CCCCCCHHHHHHHhc------cccEEEEccccc-Ch-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 182 DELAIKESDRQLLAS------EVDIMIHGAATI-RF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~------~vd~ViH~AA~v-~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
++ +++.+++ .+|+|||+||.. .. .+.++..+++|+.|+.++.+++... ...+||++||.
T Consensus 304 ~~------~v~~~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-~~~~iV~~SS~ 376 (496)
T 3mje_A 304 RE------ALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-DLDAFVLFSSG 376 (496)
T ss_dssp HH------HHHHHHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-CCSEEEEEEEH
T ss_pred HH------HHHHHHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeCh
Confidence 76 7777775 479999999976 21 3557788999999999999999884 78899999998
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceee
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIII 327 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~ 327 (614)
.+.... | .-..|+.+|...+.+.++....|++++.+.||.+.
T Consensus 377 a~~~g~----------~----------------------------g~~~YaAaKa~ldala~~~~~~Gi~v~sV~pG~w~ 418 (496)
T 3mje_A 377 AAVWGS----------G----------------------------GQPGYAAANAYLDALAEHRRSLGLTASSVAWGTWG 418 (496)
T ss_dssp HHHTTC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHTTCCCEEEEECEES
T ss_pred HhcCCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHhcCCeEEEEECCccc
Confidence 653211 0 01479999999999988776689999999999875
Q ss_pred cc
Q psy6053 328 PV 329 (614)
Q Consensus 328 g~ 329 (614)
++
T Consensus 419 ~~ 420 (496)
T 3mje_A 419 EV 420 (496)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-13 Score=135.42 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=149.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.. |++..|..... +.++++.+ ...++.++.+|+
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~Ga~---Vv~~~r~~~~~---~~~~~~~~--------------~~~~~~~~~~Dv 64 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEERAI---PVVFARHAPDG---AFLDALAQ--------------RQPRATYLPVEL 64 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCCCH---HHHHHHHH--------------HCTTCEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEECCcccH---HHHHHHHh--------------cCCCEEEEEeec
Confidence 67999999999999999999999999865 88888876543 22222211 235688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC------hhHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR------FDEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~v 244 (614)
++++ +.+.+++ ++|++||+||... ..+.++..+++|+.|+..+.+.+..+ .+-.++|++
T Consensus 65 ~~~~------~v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVni 138 (258)
T 4gkb_A 65 QDDA------QCRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNI 138 (258)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 9866 6655553 5899999999632 24667888999999999888877542 112589999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+.-+.+.+..+. +|+++..
T Consensus 139 sS~~~~~~~~--------------------------------------~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~ 180 (258)
T 4gkb_A 139 SSKTAVTGQG--------------------------------------NTSGYCASKGAQLALTREWAVALREHGVRVNA 180 (258)
T ss_dssp CCTHHHHCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred eehhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 9997532211 014799999987777765543 7999999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+-||.|-.+..+ .|......+...........+ ...-+...+|+|++++.++..... -..++++++.
T Consensus 181 V~PG~i~T~~~~---~~~~~~~~~~~~~~~~~~~~p--------lg~R~g~peeiA~~v~fLaS~~a~--~iTG~~i~VD 247 (258)
T 4gkb_A 181 VIPAEVMTPLYR---NWIATFEDPEAKLAEIAAKVP--------LGRRFTTPDEIADTAVFLLSPRAS--HTTGEWLFVD 247 (258)
T ss_dssp EEECSBCCSCC--------------CHHHHHHTTCT--------TTTSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred EecCCCCChhHh---hhhhcccChHHHHHHHHhcCC--------CCCCCcCHHHHHHHHHHHhCchhc--CccCCeEEEC
Confidence 999988554321 111111111112222211110 001244568999999888855432 2367888887
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
+|
T Consensus 248 GG 249 (258)
T 4gkb_A 248 GG 249 (258)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-14 Score=138.83 Aligned_cols=218 Identities=10% Similarity=0.019 Sum_probs=135.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEE-E--ccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-M--RQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-v--R~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+|+++||||||+||++++++|++.|++ |+++ . |+. +++++..+. . .+..+. |
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~---V~~~~~~~r~~------~~~~~~~~~-------------~-~~~~~~--~ 55 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYT---VVCHDASFADA------AERQRFESE-------------N-PGTIAL--A 55 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCE---EEECCGGGGSH------HHHHHHHHH-------------S-TTEEEC--C
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE---EEEecCCcCCH------HHHHHHHHH-------------h-CCCccc--C
Confidence 578999999999999999999999876 7887 5 753 233322110 1 111221 2
Q ss_pred CCCCCCCCCHHHHHHHh---ccccEEEEcccccCh----------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 179 AEADELAIKESDRQLLA---SEVDIMIHGAATIRF----------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~---~~vd~ViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
..+.. +.++.+. .++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 56 ~~~v~-----~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv 130 (244)
T 1zmo_A 56 EQKPE-----RLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVI 130 (244)
T ss_dssp CCCGG-----GHHHHHGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHH-----HHHHHHHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 22211 1233333 268999999996543 2567788999999999999887531 3457899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+.... | ....|+.||+..+.+.+..+. .|+.+
T Consensus 131 ~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 172 (244)
T 1zmo_A 131 FITSSVGKKPL----------A----------------------------YNPLYGPARAATVALVESAAKTLSRDGILL 172 (244)
T ss_dssp EECCGGGTSCC----------T----------------------------TCTTHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECChhhCCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 99998654321 0 015799999999988877654 58999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
++++||.|-.+...+ | .....+ .......... . + ..-+...+|+|++++.++..... ...+.++.
T Consensus 173 ~~v~PG~v~T~~~~~---~-~~~~~~-~~~~~~~~~~---~---p--~~r~~~pe~vA~~v~~l~s~~~~--~~tG~~i~ 237 (244)
T 1zmo_A 173 YAIGPNFFNNPTYFP---T-SDWENN-PELRERVDRD---V---P--LGRLGRPDEMGALITFLASRRAA--PIVGQFFA 237 (244)
T ss_dssp EEEEESSBCBTTTBC---H-HHHHHC-HHHHHHHHHH---C---T--TCSCBCHHHHHHHHHHHHTTTTG--GGTTCEEE
T ss_pred EEEeeCCCcCCcccc---c-ccccch-HHHHHHHhcC---C---C--CCCCcCHHHHHHHHHHHcCcccc--CccCCEEE
Confidence 999999885442100 0 000000 0111111100 0 0 01256789999999988865321 12577887
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.++
T Consensus 238 vdgG 241 (244)
T 1zmo_A 238 FTGG 241 (244)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 7665
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-12 Score=131.00 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=148.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.. |++..|.. +++++..+ .++ + ...++.++.+|+
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga~---Vv~~~~~~------~~~~~~~~-----~i~----~-~g~~~~~~~~Dv 65 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSI---VVAVELLE------DRLNQIVQ-----ELR----G-MGKEVLGVKADV 65 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----H-TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCcEEEEEccC
Confidence 57999999999999999999999999865 78888853 33333221 111 1 345789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +.+.+++ ++|++||+||... + .+.++..+++|+.|+..+.+.+... .+-.++
T Consensus 66 t~~~------~v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~I 139 (254)
T 4fn4_A 66 SKKK------DVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVI 139 (254)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEE
Confidence 9976 6766654 5899999999532 2 3568889999999998888776542 234689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+.-..+.+..+. +|++
T Consensus 140 VnisS~~g~~~~~--------------------------------------~~~~Y~asKaal~~ltr~lA~ela~~gIr 181 (254)
T 4fn4_A 140 VNTASIAGIRGGF--------------------------------------AGAPYTVAKHGLIGLTRSIAAHYGDQGIR 181 (254)
T ss_dssp EEECCGGGTCSSS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEechhhcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHhhhhCeE
Confidence 9999997643210 014799999977766655543 7999
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+-||.|-.+... ..............+... +.. -+-..+|+|++++.++..... --.++++
T Consensus 182 VN~V~PG~i~T~~~~------~~~~~~~~~~~~~~~~~~------~~~--R~g~pediA~~v~fLaSd~a~--~iTG~~i 245 (254)
T 4fn4_A 182 AVAVLPGTVKTNIGL------GSSKPSELGMRTLTKLMS------LSS--RLAEPEDIANVIVFLASDEAS--FVNGDAV 245 (254)
T ss_dssp EEEEEECSBCSSCTT------SCSSCCHHHHHHHHHHHT------TCC--CCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeCCCCCcccc------cccCCcHHHHHHHHhcCC------CCC--CCcCHHHHHHHHHHHhCchhc--CCcCCEE
Confidence 999999988544211 011111111111111000 000 123468999999988865432 1367888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.+|
T Consensus 246 ~VDGG 250 (254)
T 4fn4_A 246 VVDGG 250 (254)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 88766
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-12 Score=130.43 Aligned_cols=208 Identities=11% Similarity=0.092 Sum_probs=144.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+||||++.||+.++++|++.|.+ |++..|.+ ++++++.+ ...++..+.+|+++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~---V~~~~~~~------~~~~~~~~--------------~~~~~~~~~~Dv~~ 58 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDK---VCFIDIDE------KRSADFAK--------------ERPNLFYFHGDVAD 58 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHT--------------TCTTEEEEECCTTS
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHHHH--------------hcCCEEEEEecCCC
Confidence 489999999999999999999999976 78888863 33443322 23468899999999
Q ss_pred CCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEEe
Q psy6053 182 DELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHIS 245 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~vS 245 (614)
++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+..+ ++-.++|++|
T Consensus 59 ~~------~v~~~v~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInis 132 (247)
T 3ged_A 59 PL------TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIA 132 (247)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEe
Confidence 76 6666553 68999999986432 4668889999999999888877542 1226899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEee
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLR 322 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvR 322 (614)
|..+..... ....|+.||+.-+.+.+..+. +++.+..+-
T Consensus 133 S~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~ 174 (247)
T 3ged_A 133 STRAFQSEP--------------------------------------DSEAYASAKGGIVALTHALAMSLGPDVLVNCIA 174 (247)
T ss_dssp CGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ecccccCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 987643210 014799999977777665544 489999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
||.|-.+..+ .. ........ |. --+...+|+|++++.++.... ..++++++.+|
T Consensus 175 PG~i~t~~~~-------~~------~~~~~~~~----Pl-----~R~g~pediA~~v~fL~s~~~----iTG~~i~VDGG 228 (247)
T 3ged_A 175 PGWINVTEQQ-------EF------TQEDCAAI----PA-----GKVGTPKDISNMVLFLCQQDF----ITGETIIVDGG 228 (247)
T ss_dssp ECSBCCCC----------C------CHHHHHTS----TT-----SSCBCHHHHHHHHHHHHHCSS----CCSCEEEESTT
T ss_pred cCcCCCCCcH-------HH------HHHHHhcC----CC-----CCCcCHHHHHHHHHHHHhCCC----CCCCeEEECcC
Confidence 9987433211 10 00111110 00 013456899999999886432 37888888777
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-13 Score=135.03 Aligned_cols=228 Identities=14% Similarity=0.109 Sum_probs=150.1
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
.+.+.++||+++||||++.||+.+++.|++.|.+ |++..|++ +++++..+ + ...++..
T Consensus 22 ~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~---V~i~~r~~------~~l~~~~~---------~----~g~~~~~ 79 (273)
T 4fgs_A 22 SMTQRLNAKIAVITGATSGIGLAAAKRFVAEGAR---VFITGRRK------DVLDAAIA---------E----IGGGAVG 79 (273)
T ss_dssp ---CTTTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----HCTTCEE
T ss_pred hhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH---------H----cCCCeEE
Confidence 3445588999999999999999999999999976 88888863 34443321 1 2246788
Q ss_pred EeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCc
Q psy6053 175 ISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLE 239 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k 239 (614)
+.+|+++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.
T Consensus 80 ~~~Dv~~~~------~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G 153 (273)
T 4fgs_A 80 IQADSANLA------ELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGS 153 (273)
T ss_dssp EECCTTCHH------HHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEE
T ss_pred EEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCC
Confidence 999999976 6666654 58999999996432 4678889999999999999888652 2334
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|.+||..+..... ....|+.||+....+.+..+. +|
T Consensus 154 ~IInisS~~~~~~~~--------------------------------------~~~~Y~asKaav~~ltr~lA~Ela~~g 195 (273)
T 4fgs_A 154 SVVLTGSTAGSTGTP--------------------------------------AFSVYAASKAALRSFARNWILDLKDRG 195 (273)
T ss_dssp EEEEECCGGGGSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred eEEEEeehhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhcccC
Confidence 799999986532210 014799999988877776544 68
Q ss_pred CCEEEeecceeecccCCCCccccCCCC-chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNIN-GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~-g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
+++..+-||.|-.+.-.. +..... ....+...+.... | -. -+-..+|+|++++.++..... -..+
T Consensus 196 IrVN~V~PG~i~T~~~~~---~~~~~~~~~~~~~~~~~~~~----P---lg--R~g~peeiA~~v~FLaSd~a~--~iTG 261 (273)
T 4fgs_A 196 IRINTLSPGPTETTGLVE---LAGKDPVQQQGLLNALAAQV----P---MG--RVGRAEEVAAAALFLASDDSS--FVTG 261 (273)
T ss_dssp EEEEEEEECSBCC------------CHHHHHHHHHHHHHHS----T---TS--SCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred eEEEEEeeCCCCChhHHH---hhccCchhhHHHHHHHHhcC----C---CC--CCcCHHHHHHHHHHHhCchhc--CccC
Confidence 999999999885442111 100000 0111222222111 0 00 133468999999988865432 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
++..+.+|
T Consensus 262 ~~i~VDGG 269 (273)
T 4fgs_A 262 AELFVDGG 269 (273)
T ss_dssp CEEEESTT
T ss_pred CeEeECcC
Confidence 78887765
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=149.60 Aligned_cols=228 Identities=13% Similarity=0.067 Sum_probs=153.6
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEE-EccCCC----------cC-HHHHHHHHHhChhhHHhhhhcc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL-MRQKKG----------KN-ARQRIEELFASPLFNLLKSVHG 165 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~----------~~-~~~Rl~~~~~~~~f~~l~~~~p 165 (614)
.+-.++++|||||+|.||.++++.|++.|.. +|+++ .|+... .. ..+-++++ .
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~--~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l---------~---- 311 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGAG--HLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAEL---------A---- 311 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTCC--EEEEEECCCC---------------CHHHHHHH---------H----
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCCC--EEEEEeCCCCCCccccccccccCHHHHHHHHHH---------H----
Confidence 4557899999999999999999999999866 36666 776422 11 11111111 1
Q ss_pred ccccCeEEEEeCCCCCCCCCCCHHHHHHHhcc------ccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHH
Q psy6053 166 QKIIDKVLPISGDAEADELAIKESDRQLLASE------VDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLA 232 (614)
Q Consensus 166 ~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~------vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la 232 (614)
. ...++.++.+|+++++ +++.+++. +|+|||+||.... .+.++..+++|+.|+.++.+++
T Consensus 312 ~-~g~~v~~~~~Dvtd~~------~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~ 384 (525)
T 3qp9_A 312 D-LGATATVVTCDLTDAE------AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLL 384 (525)
T ss_dssp H-HTCEEEEEECCTTSHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-cCCEEEEEECCCCCHH------HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 3357999999999976 78888764 6999999997532 3567788999999999999999
Q ss_pred HHcCC----CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHH
Q psy6053 233 KEMKH----LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLV 308 (614)
Q Consensus 233 ~~~~~----~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv 308 (614)
..... ..+||++||..+..... .-..|+.+|...+.+.
T Consensus 385 ~~~~~~~~~~~~iV~~SS~a~~~g~~--------------------------------------g~~~YaaaKa~l~~lA 426 (525)
T 3qp9_A 385 REAAAAGGRPPVLVLFSSVAAIWGGA--------------------------------------GQGAYAAGTAFLDALA 426 (525)
T ss_dssp HHTC----CCCEEEEEEEGGGTTCCT--------------------------------------TCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCEEEEECCHHHcCCCC--------------------------------------CCHHHHHHHHHHHHHH
Confidence 88421 78999999986532210 0157999999999987
Q ss_pred HHHhhCCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhh
Q psy6053 309 VEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388 (614)
Q Consensus 309 ~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~ 388 (614)
.+....|++++.+.||.+ .+ ++ ... . .....+.. .....++.+++++++..++....
T Consensus 427 ~~~~~~gi~v~sI~pG~~-~t---gm---~~~--~--~~~~~~~~-----------~g~~~l~pee~a~~l~~~l~~~~- 483 (525)
T 3qp9_A 427 GQHRADGPTVTSVAWSPW-EG---SR---VTE--G--ATGERLRR-----------LGLRPLAPATALTALDTALGHGD- 483 (525)
T ss_dssp TSCCSSCCEEEEEEECCB-TT---SG---GGS--S--HHHHHHHH-----------TTBCCBCHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCCCEEEEECCcc-cc---cc---ccc--h--hhHHHHHh-----------cCCCCCCHHHHHHHHHHHHhCCC-
Confidence 666557999999999987 22 11 100 0 01111111 01234778999999998886543
Q ss_pred cCCCCccEEEeccCCcccccHHHHHHHHhhh
Q psy6053 389 QKEHRQSIVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 389 ~~~~~~~vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
..+ +.. .+.|..+...+...
T Consensus 484 -----~~v--~v~----~~dw~~~~~~~~~~ 503 (525)
T 3qp9_A 484 -----TAV--TIA----DVDWSSFAPGFTTA 503 (525)
T ss_dssp -----SEE--EEC----CBCHHHHHHHHHSS
T ss_pred -----CeE--EEE----eCCHHHHHhhcccc
Confidence 222 222 36787777665543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=134.38 Aligned_cols=222 Identities=14% Similarity=0.052 Sum_probs=147.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |++..|+. +++++..+ .+++ ...++..+.+|+
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga~---Vvi~~~~~------~~~~~~~~-----~l~~-----~g~~~~~~~~Dv 67 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGAR---VILNDIRA------TLLAESVD-----TLTR-----KGYDAHGVAFDV 67 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEECCSCH------HHHHHHHH-----HHHH-----TTCCEEECCCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHh-----cCCcEEEEEeeC
Confidence 57999999999999999999999999976 77777753 23332211 1111 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~ 241 (614)
++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. | ++-.++
T Consensus 68 ~~~~------~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~I 141 (255)
T 4g81_D 68 TDEL------AIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKI 141 (255)
T ss_dssp TCHH------HHHHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEE
Confidence 9976 6666654 58999999996532 467888999999999988876643 2 244689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|.+||..+..... ....|+.||+.-+.+.+..+. +|++
T Consensus 142 VnisS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltr~lA~ela~~gIr 183 (255)
T 4g81_D 142 INIGSLTSQAARP--------------------------------------TVAPYTAAKGGIKMLTCSMAAEWAQFNIQ 183 (255)
T ss_dssp EEECCGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeehhhcCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999997643211 014799999977776665543 7999
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+-||.|-.+..+. ..........+.... | -. -+...+|+|++++.++..... -..++++
T Consensus 184 VN~V~PG~i~T~~~~~-------~~~~~~~~~~~~~~~----P---l~--R~g~pediA~~v~fL~S~~a~--~iTG~~i 245 (255)
T 4g81_D 184 TNAIGPGYILTDMNTA-------LIEDKQFDSWVKSST----P---SQ--RWGRPEELIGTAIFLSSKASD--YINGQII 245 (255)
T ss_dssp EEEEEECSBCCGGGHH-------HHTCHHHHHHHHHHS----T---TC--SCBCGGGGHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCCCCCchhhc-------ccCCHHHHHHHHhCC----C---CC--CCcCHHHHHHHHHHHhCchhC--CCcCCEE
Confidence 9999999885442110 000011111111111 0 00 133468999999888754432 2367788
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.+|
T Consensus 246 ~VDGG 250 (255)
T 4g81_D 246 YVDGG 250 (255)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 88766
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.6e-13 Score=130.26 Aligned_cols=220 Identities=13% Similarity=0.085 Sum_probs=146.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.+++.|.+.|.+ |++..|.... +..+++ ++ ...++..+.+|+
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga~---Vvi~~r~~~~----~~~~~~---------~~-----~g~~~~~~~~Dv 65 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGAE---VVCAARRAPD----ETLDII---------AK-----DGGNASALLIDF 65 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCCH----HHHHHH---------HH-----TTCCEEEEECCT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCCE---EEEEeCCcHH----HHHHHH---------HH-----hCCcEEEEEccC
Confidence 57999999999999999999999999976 7888886431 222222 11 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc--cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLAS--EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~V~vST 246 (614)
+++. +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. | ++-.++|.+||
T Consensus 66 ~d~~------~v~~~~~~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS 139 (247)
T 4hp8_A 66 ADPL------AAKDSFTDAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS 139 (247)
T ss_dssp TSTT------TTTTSSTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHH------HHHHHHHhCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 9976 4444443 58999999997532 467888999999999988886543 2 23468999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+..... ....|+.||+.-..+.+..+. +|+++..+-
T Consensus 140 ~~~~~g~~--------------------------------------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~ 181 (247)
T 4hp8_A 140 LLSFQGGI--------------------------------------RVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIA 181 (247)
T ss_dssp GGGTSCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhhCCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEe
Confidence 87633210 014799999977777665443 799999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
||.|-.+..+. ..........+.... |. --+-..+|+|++++.++..... -..++++.+.+|
T Consensus 182 PG~i~T~~~~~-------~~~~~~~~~~~~~~~----Pl-----gR~g~peeiA~~v~fLaSd~a~--~iTG~~i~VDGG 243 (247)
T 4hp8_A 182 PGYIETNNTEA-------LRADAARNKAILERI----PA-----GRWGHSEDIAGAAVFLSSAAAD--YVHGAILNVDGG 243 (247)
T ss_dssp ECSBCSGGGHH-------HHTSHHHHHHHHTTC----TT-----SSCBCTHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred eCCCCCcchhh-------cccCHHHHHHHHhCC----CC-----CCCcCHHHHHHHHHHHhCchhc--CCcCCeEEECcc
Confidence 99885432110 000011111122211 00 0123458999999888755432 136778887765
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-12 Score=127.77 Aligned_cols=223 Identities=13% Similarity=0.040 Sum_probs=148.1
Q ss_pred cCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
++||+++||||+| -||+.+++.|++.|.+ |++..|+... .+.+.+.++. . ...++.++.+
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~---Vvi~~r~~~~---~~~~~~~~~~---------~---~~~~~~~~~~ 65 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAK---LVFTYRKERS---RKELEKLLEQ---------L---NQPEAHLYQI 65 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTTCE---EEEEESSGGG---HHHHHHHHGG---------G---TCSSCEEEEC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCE---EEEEECCHHH---HHHHHHHHHh---------c---CCCcEEEEEc
Confidence 5799999999987 7999999999999976 8888887433 2333333221 1 2246889999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-CCC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-KHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~ 238 (614)
|+++++ +.+.+++ ++|++||+||.... .+.+...+++|+.++..+.+.+... ++-
T Consensus 66 Dv~~~~------~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~ 139 (256)
T 4fs3_A 66 DVQSDE------EVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEG 139 (256)
T ss_dssp CTTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTC
T ss_pred cCCCHH------HHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999865 6655543 68999999996432 2345667889999998888877653 233
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+.... | ....|+.||+.-+.+.+..+. +
T Consensus 140 G~IVnisS~~~~~~~----------~----------------------------~~~~Y~asKaal~~ltr~lA~Ela~~ 181 (256)
T 4fs3_A 140 GSIVATTYLGGEFAV----------Q----------------------------NYNVMGVAKASLEANVKYLALDLGPD 181 (256)
T ss_dssp EEEEEEECGGGTSCC----------T----------------------------TTHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEeccccccCc----------c----------------------------cchhhHHHHHHHHHHHHHHHHHhCcc
Confidence 589999998653221 0 014799999987777665543 6
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++..+.||.|-.+..+ ...........+.... |- . -+...+|+|++++.++..... -..+
T Consensus 182 gIrVN~V~PG~i~T~~~~-------~~~~~~~~~~~~~~~~----Pl---~--R~g~peevA~~v~fL~Sd~a~--~iTG 243 (256)
T 4fs3_A 182 NIRVNAISAGPIRTLSAK-------GVGGFNTILKEIKERA----PL---K--RNVDQVEVGKTAAYLLSDLSS--GVTG 243 (256)
T ss_dssp TEEEEEEEECCCCSGGGT-------TCTTHHHHHHHHHHHS----TT---S--SCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CeEEEEEecCCCCChhhh-------hccCCHHHHHHHHhcC----CC---C--CCcCHHHHHHHHHHHhCchhc--CccC
Confidence 999999999988554322 1122222332222211 00 0 134568999999888854332 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++.+.+|
T Consensus 244 ~~i~VDGG 251 (256)
T 4fs3_A 244 ENIHVDSG 251 (256)
T ss_dssp CEEEESTT
T ss_pred CEEEECcC
Confidence 78887766
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=126.19 Aligned_cols=240 Identities=12% Similarity=0.039 Sum_probs=139.0
Q ss_pred cCCcEEEEeccc--ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccc-cCeEEEEe
Q psy6053 100 FTGKTLFMTGAS--GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKI-IDKVLPIS 176 (614)
Q Consensus 100 ~~~~~VLITGaT--GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~-~~~v~~v~ 176 (614)
+++|+++||||+ |+||++++++|++.|.+ |+++.|.... .+..+-.+..-.+.+. +..... ......+.
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~---V~~~~r~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE---ILVGTWVPAL----NIFETSLRRGKFDQSR-VLPDGSLMEIKKVYP 77 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE---EEEEEEHHHH----HHHHHHHHTTTTTGGG-BCTTSSBCCEEEEEE
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCe---EEEeeccccc----hhhhhhhhhhHhhhhh-hhccccccccccccc
Confidence 568999999999 99999999999999876 7888764210 0000000000000010 000000 01123334
Q ss_pred CCCCCC---CCCC-----------CHHHHHHHh-------ccccEEEEcccccC-----h----hHHHHHHHHHhHHHHH
Q psy6053 177 GDAEAD---ELAI-----------KESDRQLLA-------SEVDIMIHGAATIR-----F----DEALKKAVLLNTRGTK 226 (614)
Q Consensus 177 gDl~~~---~lGL-----------s~~~~~~l~-------~~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~ 226 (614)
+|+.-. ++.. ++++.+.++ .++|++||+||... + .+.++..+++|+.|+.
T Consensus 78 ~~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~ 157 (297)
T 1d7o_A 78 LDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFV 157 (297)
T ss_dssp ECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred cceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHH
Confidence 443100 0000 001233333 36899999998521 1 3457788999999999
Q ss_pred HHHHHHHHc-CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHH
Q psy6053 227 MMLSLAKEM-KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSE 305 (614)
Q Consensus 227 ~ll~la~~~-~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE 305 (614)
++++.+... ..-.++|++||..+.... | .+...|+.||+..+
T Consensus 158 ~l~~~~~~~m~~~g~iv~isS~~~~~~~----------~---------------------------~~~~~Y~asKaa~~ 200 (297)
T 1d7o_A 158 SLLSHFLPIMNPGGASISLTYIASERII----------P---------------------------GYGGGMSSAKAALE 200 (297)
T ss_dssp HHHHHHGGGEEEEEEEEEEECGGGTSCC----------T---------------------------TCTTTHHHHHHHHH
T ss_pred HHHHHHHHHhccCceEEEEeccccccCC----------C---------------------------CcchHHHHHHHHHH
Confidence 999999763 112589999998653211 0 00137999999888
Q ss_pred HHHHHHhh-----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHH
Q psy6053 306 GLVVEAMN-----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIF 380 (614)
Q Consensus 306 ~lv~~~~~-----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii 380 (614)
.+.+..+. +|+++..++||.|.++..... .....+........ + ...+...+|+|++++
T Consensus 201 ~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~-------p--~~r~~~pedvA~~v~ 264 (297)
T 1d7o_A 201 SDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAI-------GFIDTMIEYSYNNA-------P--IQKTLTADEVGNAAA 264 (297)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCC-------SHHHHHHHHHHHHS-------S--SCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHhCcccCcEEEEEeccccccchhhhc-------cccHHHHHHhhccC-------C--CCCCCCHHHHHHHHH
Confidence 87765432 389999999999977643211 11111211111111 0 012457899999998
Q ss_pred HHHHhhhhcCCCCccEEEeccC
Q psy6053 381 VAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 381 ~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.++..... ...+.++++.++
T Consensus 265 ~l~s~~~~--~itG~~i~vdgG 284 (297)
T 1d7o_A 265 FLVSPLAS--AITGATIYVDNG 284 (297)
T ss_dssp HHTSGGGT--TCCSCEEEESTT
T ss_pred HHhCcccc--CCCCCEEEECCC
Confidence 88754321 135788998877
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=128.75 Aligned_cols=220 Identities=15% Similarity=0.148 Sum_probs=141.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||++|||||++.||+.+++.|++.|.+ |++..|.+... ..+...+.+|+
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~Ga~---V~~~~r~~~~~--------------------------~~~~~~~~~Dv 59 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELGAQ---VLTTARARPEG--------------------------LPEELFVEADL 59 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTTCE---EEEEESSCCTT--------------------------SCTTTEEECCT
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcCCE---EEEEECCchhC--------------------------CCcEEEEEcCC
Confidence 57999999999999999999999999976 88888875321 12234688999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
++++ +.+.+++ ++|++||+||... + .+.++..+++|+.|+..+.+.+... .+-.+
T Consensus 60 ~~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~ 133 (261)
T 4h15_A 60 TTKE------GCAIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGV 133 (261)
T ss_dssp TSHH------HHHHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCce
Confidence 9876 5555543 5899999998532 2 3567889999999998888766531 24468
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.... |. ....|+.||+..+.+.+..+. +|+
T Consensus 134 Iv~isS~~~~~~~----------~~---------------------------~~~~Y~asKaal~~lt~~lA~Ela~~gI 176 (261)
T 4h15_A 134 VVHVTSIQRVLPL----------PE---------------------------STTAYAAAKAALSTYSKAMSKEVSPKGV 176 (261)
T ss_dssp EEEECCGGGTSCC----------TT---------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEEehhhccCC----------CC---------------------------ccHHHHHHHHHHHHHHHHHHHHhhhhCe
Confidence 9999998653211 00 014699999987777665544 799
Q ss_pred CEEEeecceeecccCCCCcccc-C----CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWT-D----NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~-d----~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~ 391 (614)
++..+.||.|-.+......... . ................ | .--+...+|+|++++.++..... -
T Consensus 177 rVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----P-----lgR~g~peevA~~v~fLaS~~a~--~ 245 (261)
T 4h15_A 177 RVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGI----P-----LGRPAKPEEVANLIAFLASDRAA--S 245 (261)
T ss_dssp EEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCC----T-----TSSCBCHHHHHHHHHHHHSGGGT--T
T ss_pred EEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCC----C-----CCCCcCHHHHHHHHHHHhCchhc--C
Confidence 9999999988433110000000 0 0000001111111110 0 00134568999999888754332 1
Q ss_pred CCccEEEeccC
Q psy6053 392 HRQSIVHLTSS 402 (614)
Q Consensus 392 ~~~~vyni~~~ 402 (614)
..++++++.+|
T Consensus 246 itG~~i~VDGG 256 (261)
T 4h15_A 246 ITGAEYTIDGG 256 (261)
T ss_dssp CCSCEEEESTT
T ss_pred ccCcEEEECCc
Confidence 36788888766
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=145.81 Aligned_cols=210 Identities=14% Similarity=0.102 Sum_probs=133.3
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC-------CCcCHHHHHHHHHhChhhHHhhhhccccccC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK-------KGKNARQRIEELFASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~-------~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~ 170 (614)
.-++||+++||||+|+||++++++|++.|.. |+++.|.. +....++-.+++ +. ...
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~---Vv~~~r~~~~~~~~~~~~~~~~~~~~i---------~~-----~~~ 77 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAK---VVVNDLGGTHSGDGASQRAADIVVDEI---------RK-----AGG 77 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEC--------------CHHHHHHHH---------HH-----TTC
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCcccccccCCHHHHHHHHHHH---------HH-----hCC
Confidence 3478999999999999999999999999865 78877722 111111111111 11 111
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM- 235 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~- 235 (614)
. +.+|+++.. +.+.+++ .+|++||+||.... .+.++..+++|+.|+.++++++...
T Consensus 78 ~---~~~D~~d~~------~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m 148 (613)
T 3oml_A 78 E---AVADYNSVI------DGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYM 148 (613)
T ss_dssp C---EEECCCCGG------GHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred e---EEEEeCCHH------HHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 236888765 5555554 58999999997532 3567889999999999999988331
Q ss_pred --CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh
Q psy6053 236 --KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN 313 (614)
Q Consensus 236 --~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~ 313 (614)
.+..++|++||..+..... ....|+.||+..+.+.+..+.
T Consensus 149 ~~~~~g~IV~isS~a~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~la~ 190 (613)
T 3oml_A 149 KKQNYGRIIMTSSNSGIYGNF--------------------------------------GQVNYTAAKMGLIGLANTVAI 190 (613)
T ss_dssp HTTTCEEEEEECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECCHHHcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHH
Confidence 3457899999986532110 014799999998888876654
Q ss_pred ----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhc
Q psy6053 314 ----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ 389 (614)
Q Consensus 314 ----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~ 389 (614)
.|+.+..+.||.+..... .... .........+++|++++.++....
T Consensus 191 e~~~~gI~vn~v~Pg~~t~~~~--------~~~~--------------------~~~~~~~~pedvA~~v~~L~s~~~-- 240 (613)
T 3oml_A 191 EGARNNVLCNVIVPTAASRMTE--------GILP--------------------DILFNELKPKLIAPVVAYLCHESC-- 240 (613)
T ss_dssp HHGGGTEEEEEEEEC------C--------CCCC--------------------HHHHTTCCGGGTHHHHHHTTSTTC--
T ss_pred HhCccCeEEEEEECCCCChhhh--------hccc--------------------hhhhhcCCHHHHHHHHHHhcCCCc--
Confidence 589999999986532111 0000 111233477899999888775542
Q ss_pred CCCCccEEEeccC
Q psy6053 390 KEHRQSIVHLTSS 402 (614)
Q Consensus 390 ~~~~~~vyni~~~ 402 (614)
...+.++++.++
T Consensus 241 -~~tG~~i~vdGG 252 (613)
T 3oml_A 241 -EDNGSYIESAAG 252 (613)
T ss_dssp -CCCSCEEEEETT
T ss_pred -CCCceEEEECCC
Confidence 236778888766
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-11 Score=121.67 Aligned_cols=248 Identities=13% Similarity=0.029 Sum_probs=120.9
Q ss_pred cCCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEEccC------CCcCHHHHHHHHH--hC----hhhHHhhhhcc
Q psy6053 100 FTGKTLFMTGA--SGFLGKVLLEKILRKSPNVKKIYILMRQK------KGKNARQRIEELF--AS----PLFNLLKSVHG 165 (614)
Q Consensus 100 ~~~~~VLITGa--TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~------~~~~~~~Rl~~~~--~~----~~f~~l~~~~p 165 (614)
+++|+++|||| +|+||++++++|++.|.+ |+++.|+. ... ..+++++.. .. ..-+.++....
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~---Vv~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGAR---VLVGTWPPVYSIFKKGL-ESSRFEQDSFYAQEPSSKVAAEAAEKPV 82 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTCE---EEEEECHHHHHHHHC-------------------------------
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE---EEEEeccccccchhhhh-hhhhhhhhhhhhcchhhhHHHHhhhccc
Confidence 56899999999 899999999999999875 78887642 000 001111100 00 00001110000
Q ss_pred ccccCeEEEEeCCC--CCCC-CCC-----------CHHHHHHHh-------ccccEEEEcccccC-----h----hHHHH
Q psy6053 166 QKIIDKVLPISGDA--EADE-LAI-----------KESDRQLLA-------SEVDIMIHGAATIR-----F----DEALK 215 (614)
Q Consensus 166 ~~~~~~v~~v~gDl--~~~~-lGL-----------s~~~~~~l~-------~~vd~ViH~AA~v~-----~----~~~~~ 215 (614)
......++.+|+ +++. +-. +.++++.++ .++|++||+||... + .+.++
T Consensus 83 --~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~ 160 (319)
T 2ptg_A 83 --DLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYL 160 (319)
T ss_dssp ----CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHH
T ss_pred --cccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHH
Confidence 000123444443 2221 000 001233333 36899999998531 1 34577
Q ss_pred HHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCC
Q psy6053 216 KAVLLNTRGTKMMLSLAKEM-KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFP 294 (614)
Q Consensus 216 ~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~p 294 (614)
..+++|+.|+.++++.+... ..-.++|++||..+.... | .+.
T Consensus 161 ~~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------~---------------------------~~~ 203 (319)
T 2ptg_A 161 AAVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVI----------P---------------------------GYG 203 (319)
T ss_dssp HHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------------------
T ss_pred HHHhHhhHHHHHHHHHHHHHHhcCceEEEEecccccccc----------C---------------------------ccc
Confidence 88999999999999998762 112589999998653211 0 001
Q ss_pred CchhhhHHHHHHHHHHHhh-----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccc
Q psy6053 295 NSYAYTKCLSEGLVVEAMN-----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADF 369 (614)
Q Consensus 295 n~Y~~SK~~aE~lv~~~~~-----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~ 369 (614)
..|+.||+..+.+.+..+. +|+.+..++||.|-.+.....+. . ....+...... .. .......-+
T Consensus 204 ~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~---~--~~~~~~~~~~~-~~----~~~~p~~r~ 273 (319)
T 2ptg_A 204 GGMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGK---A--GDKTFIDLAID-YS----EANAPLQKE 273 (319)
T ss_dssp ---------THHHHHHHHHHHHHHHCCEEEEEEECCCC-----------------------------------------C
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCCccChhhhhccc---c--cchhhHHHHHH-HH----hccCCCCCC
Confidence 3699999877777654432 48999999999886543211000 0 00000000000 00 000001124
Q ss_pred eeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 370 LPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 370 vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
...+++|++++.++..... -..+.++.+.++
T Consensus 274 ~~peevA~~v~~L~s~~~~--~itG~~i~vdGG 304 (319)
T 2ptg_A 274 LESDDVGRAALFLLSPLAR--AVTGATLYVDNG 304 (319)
T ss_dssp CCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHhCcccC--CccCCEEEECCC
Confidence 5789999999988764331 236778888776
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-10 Score=135.39 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=117.5
Q ss_pred cCCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGF-LGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGF-lG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
++||+||||||+|. ||.++++.|++.|.+ |+++.|.... ...+-.+++ ..+... ...++.++.+|
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~---VVl~~~R~~~-~l~~~a~eL---------~~el~~-~G~~v~~v~~D 715 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAK---VIVTTSRFSR-QVTEYYQGI---------YARCGA-RGSQLVVVPFN 715 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTCE---EEEEESSCCH-HHHHHHHHH---------HHHHCC-TTCEEEEEECC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCE---EEEEecCChH-HHHHHHHHH---------HHHhhc-cCCeEEEEEcC
Confidence 57899999999999 999999999999865 7777543221 111111111 111111 23578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-----------cccEEEEcccccCh----------hHHHHHHHHHhHHHHHHHHHHHHHcCC
Q psy6053 179 AEADELAIKESDRQLLAS-----------EVDIMIHGAATIRF----------DEALKKAVLLNTRGTKMMLSLAKEMKH 237 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-----------~vd~ViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~~~~ 237 (614)
+++++ +++.+++ .+|++||+||.... .+.+...+++|+.|+.+++++++..+.
T Consensus 716 Vsd~e------sV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~ 789 (1878)
T 2uv9_A 716 QGSKQ------DVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERG 789 (1878)
T ss_dssp TTCHH------HHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred CCCHH------HHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99866 6666553 48999999996532 256778899999999999887543222
Q ss_pred -----CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh
Q psy6053 238 -----LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM 312 (614)
Q Consensus 238 -----~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~ 312 (614)
..+||++||..+.... ...|+.||+..+.+.....
T Consensus 790 M~~~~~G~IVnISS~ag~~gg----------------------------------------~~aYaASKAAL~aLt~~la 829 (1878)
T 2uv9_A 790 YETRPAQVILPLSPNHGTFGN----------------------------------------DGLYSESKLALETLFNRWY 829 (1878)
T ss_dssp CCSCCEEECCEECSCSSSSSC----------------------------------------CSSHHHHHHHHTTHHHHHH
T ss_pred HHhCCCCEEEEEcchhhccCC----------------------------------------chHHHHHHHHHHHHHHHHH
Confidence 2589999998653210 1579999999998876433
Q ss_pred h----CCCCEEEeecceee
Q psy6053 313 N----NGMPCLMLRPSIII 327 (614)
Q Consensus 313 ~----~glp~~IvRp~~I~ 327 (614)
. .+++++.+.||.|-
T Consensus 830 AeEla~~IrVNaVaPG~V~ 848 (1878)
T 2uv9_A 830 SESWGNYLTICGAVIGWTR 848 (1878)
T ss_dssp HSTTTTTEEEEEEEECCBC
T ss_pred HHHcCCCeEEEEEEeccee
Confidence 2 24888899998775
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-11 Score=122.67 Aligned_cols=245 Identities=11% Similarity=0.030 Sum_probs=136.1
Q ss_pred cCCcEEEEecc--cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhh-ccccccCeEEEEe
Q psy6053 100 FTGKTLFMTGA--SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSV-HGQKIIDKVLPIS 176 (614)
Q Consensus 100 ~~~~~VLITGa--TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~-~p~~~~~~v~~v~ 176 (614)
+++|+++|||| ||+||++++++|++.|.+ |+++.|... ..|..+..+..-.+.+.+. ... ....+.++.
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~---Vv~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGAR---VALGTWPPV----LGLFQKSLQSGRLDEDRKLPDGS-LIEFAGVYP 78 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTCE---EEEEECHHH----HHHHHHHHHHTTTHHHHBCTTSC-BCCCSCEEE
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCCE---EEEEecccc----cchhhhhhhhhhhhhhhhhhccc-ccccccccc
Confidence 57899999999 899999999999999875 888877521 0111000000000001000 000 001123344
Q ss_pred CCC--CCCC-CCC-----------CHHHHHHHh-------ccccEEEEcccccC-----h----hHHHHHHHHHhHHHHH
Q psy6053 177 GDA--EADE-LAI-----------KESDRQLLA-------SEVDIMIHGAATIR-----F----DEALKKAVLLNTRGTK 226 (614)
Q Consensus 177 gDl--~~~~-lGL-----------s~~~~~~l~-------~~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~ 226 (614)
+|+ +++. +.. +.++++.++ .++|++||+||... + .+.++..+++|+.|+.
T Consensus 79 ~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~ 158 (315)
T 2o2s_A 79 LDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFV 158 (315)
T ss_dssp CCTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred ccccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHH
Confidence 443 2211 000 011333333 36899999998531 1 3557788999999999
Q ss_pred HHHHHHHHc-CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHH
Q psy6053 227 MMLSLAKEM-KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSE 305 (614)
Q Consensus 227 ~ll~la~~~-~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE 305 (614)
++++.+... ..-.++|++||..+.... | .+...|+.||+..+
T Consensus 159 ~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------~---------------------------~~~~~Y~asKaal~ 201 (315)
T 2o2s_A 159 SLLQHFGPIMNEGGSAVTLSYLAAERVV----------P---------------------------GYGGGMSSAKAALE 201 (315)
T ss_dssp HHHHHHSTTEEEEEEEEEEEEGGGTSCC----------T---------------------------TCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEecccccccC----------C---------------------------CccHHHHHHHHHHH
Confidence 999998752 112589999998653211 0 01137999999888
Q ss_pred HHHHHHhh-----CCCCEEEeecceeecccCCCCccccCCCCch-HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHH
Q psy6053 306 GLVVEAMN-----NGMPCLMLRPSIIIPVWREPLPGWTDNINGP-TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGI 379 (614)
Q Consensus 306 ~lv~~~~~-----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~-~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~ai 379 (614)
.+.+..+. +|+.+..++||.|-.+....... ...... ........... + ..-+...+++|+++
T Consensus 202 ~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~~~~~-------p--~~r~~~pedvA~~v 270 (315)
T 2o2s_A 202 SDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGK--SGEKSFIDYAIDYSYNNA-------P--LRRDLHSDDVGGAA 270 (315)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTC--SSSSCHHHHHHHHHHHHS-------S--SCCCCCHHHHHHHH
T ss_pred HHHHHHHHHhCcccCeEEEEEecccccchhhhhccc--cccchhHHHHHHHHhccC-------C--CCCCCCHHHHHHHH
Confidence 77765432 48999999999885432110000 000000 00100010000 0 01245789999999
Q ss_pred HHHHHhhhhcCCCCccEEEeccC
Q psy6053 380 FVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 380 i~~~~~~~~~~~~~~~vyni~~~ 402 (614)
+.++..... -..+.++.+.++
T Consensus 271 ~~L~s~~~~--~itG~~i~vdGG 291 (315)
T 2o2s_A 271 LFLLSPLAR--AVSGVTLYVDNG 291 (315)
T ss_dssp HHHTSGGGT--TCCSCEEEESTT
T ss_pred HHHhCchhc--cCcCCEEEECCC
Confidence 988764321 136778888776
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.2e-11 Score=136.39 Aligned_cols=166 Identities=17% Similarity=0.221 Sum_probs=126.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHH-hhCCCccEEEEEEccCCCc-CHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKIL-RKSPNVKKIYILMRQKKGK-NARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll-~~g~~v~~V~~LvR~~~~~-~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+-.+++++||||+|.||..+++.|. +.|.. +|+++.|+.... ..++-++++.. ...++.++.
T Consensus 527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~--~vvl~~R~~~~~~~~~~~~~~l~~--------------~G~~v~~~~ 590 (795)
T 3slk_A 527 WDAAGTVLVTGGTGALGAEVARHLVIERGVR--NLVLVSRRGPAASGAAELVAQLTA--------------YGAEVSLQA 590 (795)
T ss_dssp CCTTSEEEEETTTSHHHHHHHHHHHHTSSCC--EEEEEESSGGGSTTHHHHHHHHHH--------------TTCEEEEEE
T ss_pred cccccceeeccCCCCcHHHHHHHHHHHcCCc--EEEEeccCccchHHHHHHHHHHHh--------------cCCcEEEEE
Confidence 4568999999999999999999999 67754 588899974332 23333333311 335799999
Q ss_pred CCCCCCCCCCCHHHHHHHhcc------ccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 177 GDAEADELAIKESDRQLLASE------VDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~------vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
+|+++++ +++.+++. +|+|||+|+.... .+.++..+++|+.|+.++.+++. +.+ .||.
T Consensus 591 ~Dvsd~~------~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~--~~l-~iV~ 661 (795)
T 3slk_A 591 CDVADRE------TLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELID--PDV-ALVL 661 (795)
T ss_dssp CCTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSC--TTS-EEEE
T ss_pred eecCCHH------HHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHh--hCC-EEEE
Confidence 9999976 78777753 6999999997532 35678889999999999999883 456 8999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeec
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRP 323 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp 323 (614)
+||..+..... .-..|+.+|...+.+..+....|++++.+-|
T Consensus 662 ~SS~ag~~g~~--------------------------------------g~~~YaAaka~~~alA~~~~~~Gi~v~sI~p 703 (795)
T 3slk_A 662 FSSVSGVLGSG--------------------------------------GQGNYAAANSFLDALAQQRQSRGLPTRSLAW 703 (795)
T ss_dssp EEETHHHHTCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EccHHhcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 99986532210 0147999999999988887778999999999
Q ss_pred ceee
Q psy6053 324 SIII 327 (614)
Q Consensus 324 ~~I~ 327 (614)
|.+-
T Consensus 704 G~v~ 707 (795)
T 3slk_A 704 GPWA 707 (795)
T ss_dssp CCCS
T ss_pred CeEC
Confidence 9764
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.4e-10 Score=135.32 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=118.7
Q ss_pred cCCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEEE-ccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASGF-LGKVLLEKILRKSPNVKKIYILM-RQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTGF-lG~~Ll~~Ll~~g~~v~~V~~Lv-R~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
++||+++||||+|. ||.++++.|++.|.. |+++. |.... ..+-.++ +..+.+. ...++.++.+
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~GA~---Vvl~~~R~~~~--l~~~~~e---------L~~~~~~-~g~~v~~v~~ 737 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAK---VVVTTSRFSKQ--VTDYYQS---------IYAKYGA-KGSTLIVVPF 737 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTTCE---EEEEESSCCHH--HHHHHHH---------HHHHHCC-TTCEEEEEEC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCE---EEEEecCCHHH--HHHHHHH---------HHHHhhc-CCCeEEEEEe
Confidence 57899999999999 999999999999875 77764 44311 1111111 1122222 2357899999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------------cccEEEEcccccCh----------hHHHHHHHHHhHHHHHHHHHHHHH
Q psy6053 178 DAEADELAIKESDRQLLAS-------------EVDIMIHGAATIRF----------DEALKKAVLLNTRGTKMMLSLAKE 234 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------------~vd~ViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~~ 234 (614)
|+++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+++.++.
T Consensus 738 DVsd~~------sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~ 811 (1887)
T 2uv8_A 738 NQGSKQ------DVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKS 811 (1887)
T ss_dssp CTTCHH------HHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cCCCHH------HHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999876 6665542 48999999996422 245678899999999999998854
Q ss_pred cCCC-----ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHH-H
Q psy6053 235 MKHL-----ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGL-V 308 (614)
Q Consensus 235 ~~~~-----k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~l-v 308 (614)
.+.. .++|++||..+.... ...|+.||+..+.+ .
T Consensus 812 lp~m~~~~~G~IVnISS~ag~~gg----------------------------------------~~aYaASKAAL~~Ltt 851 (1887)
T 2uv8_A 812 ARGIETRPAQVILPMSPNHGTFGG----------------------------------------DGMYSESKLSLETLFN 851 (1887)
T ss_dssp TTTCCSCCEEEEEEECSCTTCSSC----------------------------------------BTTHHHHHHHGGGHHH
T ss_pred hhhhhhCCCCEEEEEcChHhccCC----------------------------------------CchHHHHHHHHHHHHH
Confidence 3332 589999998543210 15799999999988 4
Q ss_pred HHHhh---CCCCEEEeecceeec
Q psy6053 309 VEAMN---NGMPCLMLRPSIIIP 328 (614)
Q Consensus 309 ~~~~~---~glp~~IvRp~~I~g 328 (614)
+.... ..+.++.+.||.|-+
T Consensus 852 r~lA~ela~~IrVNaV~PG~V~t 874 (1887)
T 2uv8_A 852 RWHSESWANQLTVCGAIIGWTRG 874 (1887)
T ss_dssp HHHHSSCTTTEEEEEEEECCEEC
T ss_pred HHHHHHhCCCeEEEEEEeccccc
Confidence 43333 238899999998864
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=136.16 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=117.2
Q ss_pred cCCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEE-EccCCCc-CHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 100 FTGKTLFMTGASGF-LGKVLLEKILRKSPNVKKIYIL-MRQKKGK-NARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 100 ~~~~~VLITGaTGF-lG~~Ll~~Ll~~g~~v~~V~~L-vR~~~~~-~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+++|+++||||+|. ||+++++.|++.|.+ |+++ .|..... ...+ + +..+.+. ...++.++.
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~---VVL~~~R~~e~lee~a~---e---------L~ael~a-~Ga~V~vV~ 537 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAK---VVVTTSRFSKQVTDYYQ---S---------IYAKYGA-KGSTLIVVP 537 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHTCE---EEEEESSCSTTTTTHHH---H---------TTTTTCC-TTCEEEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCcCE---EEEEeCCCHHHHHHHHH---H---------HHHHhhc-CCCeEEEEE
Confidence 57899999999998 999999999999875 7766 4543321 1111 1 1111111 235789999
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------------cccEEEEcccccCh----------hHHHHHHHHHhHHHHHHHHHHHH
Q psy6053 177 GDAEADELAIKESDRQLLAS-------------EVDIMIHGAATIRF----------DEALKKAVLLNTRGTKMMLSLAK 233 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------------~vd~ViH~AA~v~~----------~~~~~~~~~~Nv~gt~~ll~la~ 233 (614)
+|+++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..++++++
T Consensus 538 ~DVTD~e------sVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~ 611 (1688)
T 2pff_A 538 FNQGSKQ------DVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQK 611 (1688)
T ss_dssp CCSSSTT------HHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred eCCCCHH------HHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 6666542 48999999996422 35567889999999999999884
Q ss_pred HcCC-----CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHH
Q psy6053 234 EMKH-----LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLV 308 (614)
Q Consensus 234 ~~~~-----~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv 308 (614)
..+. -.++|++||..+.... ...|+.||+..+.+.
T Consensus 612 ~lp~M~krggGrIVnISSiAG~~Gg----------------------------------------~saYaASKAAL~aLt 651 (1688)
T 2pff_A 612 SARGIETRPAQVILPMSPNHGTFGG----------------------------------------DGMYSESKLSLETLF 651 (1688)
T ss_dssp HHHTCTTSCEEECCCCCSCTTTSSC----------------------------------------BTTHHHHHHHHTHHH
T ss_pred hChHHHhCCCCEEEEEEChHhccCC----------------------------------------chHHHHHHHHHHHHH
Confidence 3222 2479999998543210 157999999999984
Q ss_pred HHHh-h---CCCCEEEeecceeec
Q psy6053 309 VEAM-N---NGMPCLMLRPSIIIP 328 (614)
Q Consensus 309 ~~~~-~---~glp~~IvRp~~I~g 328 (614)
.+.. . .+++++.+.||.|-+
T Consensus 652 trsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 652 NRWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp HHTTTSSCTTTEECCCCCCCCCCC
T ss_pred HHHHHHHcCCCeEEEEEEECcCcC
Confidence 4432 2 237778888888864
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=6.8e-10 Score=115.31 Aligned_cols=184 Identities=10% Similarity=0.030 Sum_probs=116.3
Q ss_pred CCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 101 TGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 101 ~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
++|+++||||++ .||.+++++|++.|.+ |++..|.... ....|-.+..+.. ......... ....+.++.+|
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~---Vv~~~~~~~~-~l~~r~~~~~~~~--~~~~~~~~~-~~~~~~~~~~D 73 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVK---IIFGIWPPVY-NIFMKNYKNGKFD--NDMIIDKDK-KMNILDMLPFD 73 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCE---EEEEECHHHH-HHHHHHHHTTTTT--GGGBCSSSC-BCCEEEEEECC
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCE---EEEEecCccc-cccccchHHHHHH--HHHHHhhcc-ccccccccccc
Confidence 368999999875 9999999999999876 7766664310 0011111100000 000000011 23457899999
Q ss_pred CCCCCCC-CCHH-------------HHHHHh-------ccccEEEEccccc-----Ch----hHHHHHHHHHhHHHHHHH
Q psy6053 179 AEADELA-IKES-------------DRQLLA-------SEVDIMIHGAATI-----RF----DEALKKAVLLNTRGTKMM 228 (614)
Q Consensus 179 l~~~~lG-Ls~~-------------~~~~l~-------~~vd~ViH~AA~v-----~~----~~~~~~~~~~Nv~gt~~l 228 (614)
+++.... ++++ +++.++ ..+|++||+||.. .+ .+.++..+++|+.|+..+
T Consensus 74 v~~~~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l 153 (329)
T 3lt0_A 74 ASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISL 153 (329)
T ss_dssp TTCSSGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred ccccchhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHH
Confidence 9987211 1222 333333 3689999999852 11 355778899999999999
Q ss_pred HHHHHHc-CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCC-chhhhHHHHHH
Q psy6053 229 LSLAKEM-KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPN-SYAYTKCLSEG 306 (614)
Q Consensus 229 l~la~~~-~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn-~Y~~SK~~aE~ 306 (614)
.+.+... ..-.++|++||..+.... | ... .|+.||+..+.
T Consensus 154 ~~~~~p~m~~~g~Iv~isS~~~~~~~----------~----------------------------~~~~~Y~asKaal~~ 195 (329)
T 3lt0_A 154 CKYFVNIMKPQSSIISLTYHASQKVV----------P----------------------------GYGGGMSSAKAALES 195 (329)
T ss_dssp HHHHGGGEEEEEEEEEEECGGGTSCC----------T----------------------------TCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhhCCeEEEEeCccccCCC----------C----------------------------cchHHHHHHHHHHHH
Confidence 9988762 111489999998653221 0 013 79999998877
Q ss_pred HHHHHh----h-CCCCEEEeecceeecc
Q psy6053 307 LVVEAM----N-NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 307 lv~~~~----~-~glp~~IvRp~~I~g~ 329 (614)
+.+..+ . +|+.+..+.||.|-.+
T Consensus 196 ~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 196 DTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HHHHHHHHhCCccCeEEEEEecceeech
Confidence 765543 2 3899999999988654
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.1e-09 Score=108.72 Aligned_cols=172 Identities=14% Similarity=0.047 Sum_probs=116.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHh-hCCCccEEEEEEccCCCcCH---------HHHHHHHHhChhhHHhhhhcccccc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILR-KSPNVKKIYILMRQKKGKNA---------RQRIEELFASPLFNLLKSVHGQKII 169 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~-~g~~v~~V~~LvR~~~~~~~---------~~Rl~~~~~~~~f~~l~~~~p~~~~ 169 (614)
-.+|++|||||++-||..+++.|++ .|.+ |++..|....... .+.+.+.. +. ..
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~---Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~--------~~-----~G 108 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGAD---TLGVFFERPGEEGKPGTSGWYNSAAFHKFA--------AQ-----KG 108 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCE---EEEEECCCCCBTTBCCCHHHHHHHHHHHHH--------HH-----TT
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCE---EEEEeCCchhhhhhcccccchhHHHHHHHH--------Hh-----cC
Confidence 4579999999999999999999999 9876 7777776543210 11111111 00 23
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEccccc----------------C-----------------
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATI----------------R----------------- 209 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v----------------~----------------- 209 (614)
.++..+.+|+++++ +.+.+++ ++|++||+||.. .
T Consensus 109 ~~a~~i~~Dvtd~~------~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~ 182 (405)
T 3zu3_A 109 LYAKSINGDAFSDE------IKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVI 182 (405)
T ss_dssp CCEEEEESCTTSHH------HHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEE
T ss_pred CceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEEcCccccccCcccccccccccccccccccccccccccccc
Confidence 46788999999876 5655543 589999999863 0
Q ss_pred --------hhHHHHHHHHHhHHHHH-HHHHHHHHcC---CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhc
Q psy6053 210 --------FDEALKKAVLLNTRGTK-MMLSLAKEMK---HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMM 277 (614)
Q Consensus 210 --------~~~~~~~~~~~Nv~gt~-~ll~la~~~~---~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~ 277 (614)
-.+.++..+++|..++. .+++.+.... +-.++|.+||..+..... .
T Consensus 183 ~~~~i~~~t~ee~~~~v~Vn~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p----------~------------ 240 (405)
T 3zu3_A 183 KESVLQPATQSEIDSTVAVMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHD----------I------------ 240 (405)
T ss_dssp EEEEECCCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTT----------T------------
T ss_pred ccccCCCCCHHHHHHHHHhhchhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCC----------C------------
Confidence 13456777888888776 5555544311 114799999986532110 0
Q ss_pred chhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C-CCCEEEeecceeecc
Q psy6053 278 SEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N-GMPCLMLRPSIIIPV 329 (614)
Q Consensus 278 ~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~-glp~~IvRp~~I~g~ 329 (614)
.+...|+.||..-+.+.+..+. . |+++..+-||.|-.+
T Consensus 241 --------------~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNaVaPG~i~T~ 283 (405)
T 3zu3_A 241 --------------YWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVLKAVVSQ 283 (405)
T ss_dssp --------------TTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEECCCCCCH
T ss_pred --------------ccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEEeCCCcCc
Confidence 0115799999988887776554 6 899999999987544
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-08 Score=108.40 Aligned_cols=171 Identities=12% Similarity=0.036 Sum_probs=113.2
Q ss_pred CCcEEEEecccccccHHHHHHHHh-hCCCccEEEEEEccCCCcCH---------HHHHHHHHhChhhHHhhhhccccccC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILR-KSPNVKKIYILMRQKKGKNA---------RQRIEELFASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~-~g~~v~~V~~LvR~~~~~~~---------~~Rl~~~~~~~~f~~l~~~~p~~~~~ 170 (614)
.+|++|||||++.||..+++.|.+ .|.+ |++..|.+..... .+.+.+.. +. ...
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~---Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~--------~~-----~G~ 123 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGAD---TLGVFFEKPGTASKAGTAGWYNSAAFDKHA--------KA-----AGL 123 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCE---EEEEECCCCCCSSSCCCHHHHHHHHHHHHH--------HH-----TTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCE---EEEEeCCchhhhhhhcccccchhHHHHHHH--------Hh-----cCC
Confidence 479999999999999999999999 9866 7778887543221 01111111 10 234
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHh--------ccccEEEEccccc----------------C-----------------
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLA--------SEVDIMIHGAATI----------------R----------------- 209 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~--------~~vd~ViH~AA~v----------------~----------------- 209 (614)
++..+.+|+++++ +.+.++ ..+|++||+||.. .
T Consensus 124 ~a~~i~~Dvtd~~------~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~ 197 (422)
T 3s8m_A 124 YSKSINGDAFSDA------ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTI 197 (422)
T ss_dssp CEEEEESCTTSHH------HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEE
T ss_pred cEEEEEecCCCHH------HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccc
Confidence 6788999999976 554443 4589999999851 0
Q ss_pred --------hhHHHHHHHHHhHHHHH-HHHHHHHHcC---CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhc
Q psy6053 210 --------FDEALKKAVLLNTRGTK-MMLSLAKEMK---HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMM 277 (614)
Q Consensus 210 --------~~~~~~~~~~~Nv~gt~-~ll~la~~~~---~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~ 277 (614)
-.+.++..+++|..++. .+++.+.... +-.++|.+||..+....
T Consensus 198 ~~~~~~~~t~e~~~~~v~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~------------------------ 253 (422)
T 3s8m_A 198 IQASIEPASAQEIEDTITVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITW------------------------ 253 (422)
T ss_dssp EEEEECCCCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH------------------------
T ss_pred cccccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC------------------------
Confidence 12445666777766664 5566554311 11479999998653211
Q ss_pred chhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecceeecc
Q psy6053 278 SEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 278 ~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g~ 329 (614)
|. .+...|+.||+.-+.+.+..+. +|+.+..+.||.|-.+
T Consensus 254 ---------p~---~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaVaPG~i~T~ 297 (422)
T 3s8m_A 254 ---------PI---YWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQ 297 (422)
T ss_dssp ---------HH---HTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCT
T ss_pred ---------CC---ccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEcCCCcCh
Confidence 00 0014799999988877766554 6999999999988544
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.9e-09 Score=116.85 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=133.7
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||+++||||++.||+.+++.|++.|.. |++..|.. . ++-.+++ +. ...++..+.+|
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~---Vv~~~~~~-~---~~~~~~i---------~~-----~g~~~~~~~~D 377 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAK---VVVNDFKD-A---TKTVDEI---------KA-----AGGEAWPDQHD 377 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEECSSC-C---HHHHHHH---------HH-----TTCEEEEECCC
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCE---EEEEeCcc-H---HHHHHHH---------Hh-----cCCeEEEEEcC
Confidence 367899999999999999999999999976 77766632 1 1111221 10 22457778889
Q ss_pred C-CCCCCCCCHHHHHHH---hccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEE
Q psy6053 179 A-EADELAIKESDRQLL---ASEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHI 244 (614)
Q Consensus 179 l-~~~~lGLs~~~~~~l---~~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~v 244 (614)
+ ++.+ ..++.+ ..++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|++
T Consensus 378 v~~~~~-----~~~~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVni 452 (604)
T 2et6_A 378 VAKDSE-----AIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINI 452 (604)
T ss_dssp HHHHHH-----HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHH-----HHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 8 4421 122333 2469999999996431 3567889999999999888876541 234689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+.... |. ...|+.||+....+.+..+. +|+.+..
T Consensus 453 sS~ag~~~~----------~~----------------------------~~~Y~asKaal~~lt~~la~El~~~gIrVn~ 494 (604)
T 2et6_A 453 TSTSGIYGN----------FG----------------------------QANYSSSKAGILGLSKTMAIEGAKNNIKVNI 494 (604)
T ss_dssp CCHHHHSCC----------TT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CChhhccCC----------CC----------------------------ChhHHHHHHHHHHHHHHHHHHhCccCeEEEE
Confidence 998653211 00 14799999977776665443 6899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+.||. . +++.. .. . . +...+....+++|++++.++..... ..++++.+.
T Consensus 495 v~PG~--~---T~m~~---~~------~----~----------~~~~~~~~pe~vA~~v~~L~s~~~~---itG~~~~vd 543 (604)
T 2et6_A 495 VAPHA--E---TAMTL---SI------M----R----------EQDKNLYHADQVAPLLVYLGTDDVP---VTGETFEIG 543 (604)
T ss_dssp EEECC--C---CCC--------------------------------CCSSCGGGTHHHHHHTTSTTCC---CCSCEEEEE
T ss_pred EcCCC--C---Ccccc---cc------C----c----------hhhccCCCHHHHHHHHHHHhCCccC---CCCcEEEEC
Confidence 99983 1 11100 00 0 0 0001234678899998877644321 366777776
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
++
T Consensus 544 GG 545 (604)
T 2et6_A 544 GG 545 (604)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=107.04 Aligned_cols=171 Identities=9% Similarity=-0.055 Sum_probs=113.3
Q ss_pred cCCcEEEEecccccccHH--HHHHHHhhCCCccEEEEEEccCCCcCH---------HHHHHHHHhChhhHHhhhhccccc
Q psy6053 100 FTGKTLFMTGASGFLGKV--LLEKILRKSPNVKKIYILMRQKKGKNA---------RQRIEELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~--Ll~~Ll~~g~~v~~V~~LvR~~~~~~~---------~~Rl~~~~~~~~f~~l~~~~p~~~ 168 (614)
..+|++|||||++.||.. +++.|.+.|.+ |+++.|.+..... .+.+++..+ . .
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~---Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~ 121 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAH---TIGVSYETGATDRRIGTAGWYNNIFFKEFAK------------K-K 121 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCE---EEEEECCCCCCSSCCCCHHHHHHHHHHHHHH------------H-T
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCE---EEEEecCcchhhhcccccccchHHHHHHHHH------------H-c
Confidence 578999999999999999 99999988865 8888887543210 233332211 1 2
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEccccc----------------C----------------
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATI----------------R---------------- 209 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v----------------~---------------- 209 (614)
..++..+.+|+++++ +.+.+++ ++|++||+||.. .
T Consensus 122 g~~~~~~~~Dvtd~~------~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~ 195 (418)
T 4eue_A 122 GLVAKNFIEDAFSNE------TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDE 195 (418)
T ss_dssp TCCEEEEESCTTCHH------HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTE
T ss_pred CCcEEEEEeeCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccc
Confidence 346889999999865 5555543 589999999863 0
Q ss_pred ---------hhHHHHHHHHHhHHHHH-HHHHHHHHcCCC----ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHh
Q psy6053 210 ---------FDEALKKAVLLNTRGTK-MMLSLAKEMKHL----ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE 275 (614)
Q Consensus 210 ---------~~~~~~~~~~~Nv~gt~-~ll~la~~~~~~----k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~ 275 (614)
-.+.++..+++|..+.. .+++.+.. +.+ .++|.+||..+.... |.
T Consensus 196 ~~~~~~~~~t~e~~~~~~~vn~~~~~~~~~~~l~~-~~~~~~gg~IV~iSSi~~~~~~----------p~---------- 254 (418)
T 4eue_A 196 ITLKKVSSASIEEIEETRKVMGGEDWQEWCEELLY-EDCFSDKATTIAYSYIGSPRTY----------KI---------- 254 (418)
T ss_dssp EEEEEECBCCHHHHHHHHHHHSSHHHHHHHHHHHH-TTCEEEEEEEEEEECCCCGGGT----------TT----------
T ss_pred cccccccCCCHHHHHHHHHHhhHHHHHHHHHHHHH-HhhhcCCcEEEEEeCchhcCCC----------Cc----------
Confidence 12445566666766655 55555544 222 468999987542211 00
Q ss_pred hcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh----h-CCCCEEEeecceeecc
Q psy6053 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM----N-NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 276 ~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~----~-~glp~~IvRp~~I~g~ 329 (614)
.+...|+.||+.-+.+.+..+ . .|+.+..+-||.|-.+
T Consensus 255 ----------------~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~V~PG~v~T~ 297 (418)
T 4eue_A 255 ----------------YREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFVSVNKALVTK 297 (418)
T ss_dssp ----------------TTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEEEECCCCCCH
T ss_pred ----------------cccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEECCcCcCh
Confidence 011579999998776665543 3 4899999999987544
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=113.34 Aligned_cols=166 Identities=15% Similarity=0.118 Sum_probs=107.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC------CcCHHHHHHHHHhChhhHHhhhhccccccCeEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK------GKNARQRIEELFASPLFNLLKSVHGQKIIDKVL 173 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~------~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~ 173 (614)
+++|+++||||++.||+.+++.|++.|.. |++..|... +....+.+.+. ++. ...+..
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~Ga~---Vv~~~~~~~~~~~gr~~~~~~~~~~~--------i~~-----~g~~~~ 69 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAK---VVVNDLGGALNGQGGNSKAADVVVDE--------IVK-----NGGVAV 69 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEECC-----------CHHHHHHHH--------HHH-----TTCEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCE---EEEEeCCccccccccchHHHHHHHHH--------HHh-----cCCeEE
Confidence 57899999999999999999999999876 777776531 11112222111 111 112222
Q ss_pred EEeCCCCCCCCCCCHHHHHHH---hccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCce
Q psy6053 174 PISGDAEADELAIKESDRQLL---ASEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLEL 240 (614)
Q Consensus 174 ~v~gDl~~~~lGLs~~~~~~l---~~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~ 240 (614)
+|+++..- -++.++.+ +..+|++||+||.... .+.++..+++|+.|+..+.+.+.. | .+-.+
T Consensus 70 ---~d~~d~~~--~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~ 144 (604)
T 2et6_A 70 ---ADYNNVLD--GDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGR 144 (604)
T ss_dssp ---EECCCTTC--HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred ---EEcCCHHH--HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE
Confidence 46665430 01122322 2469999999996431 356788999999999988877653 1 23358
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|++||..+.... | ....|+.||+..+.+.+..+. +|+
T Consensus 145 IVnisS~ag~~~~----------~----------------------------~~~~Y~asKaal~~lt~~la~El~~~gI 186 (604)
T 2et6_A 145 IVNTSSPAGLYGN----------F----------------------------GQANYASAKSALLGFAETLAKEGAKYNI 186 (604)
T ss_dssp EEEECCHHHHHCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEECCHHHcCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhCccCe
Confidence 9999998653211 0 014799999977777665543 689
Q ss_pred CEEEeecc
Q psy6053 317 PCLMLRPS 324 (614)
Q Consensus 317 p~~IvRp~ 324 (614)
.+..+.|+
T Consensus 187 rVn~v~Pg 194 (604)
T 2et6_A 187 KANAIAPL 194 (604)
T ss_dssp EEEEEEEC
T ss_pred EEEEEccC
Confidence 99999997
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=129.60 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=120.7
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-HHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-RQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
|-.+|+++||||+|.||..+++.|++.|.. .|+++.|+...... .+.++++.. ...++.++.+
T Consensus 1881 ~~~~k~~lITGgs~GIG~aia~~la~~Ga~--~vvl~~R~~~~~~~~~~~~~~l~~--------------~g~~v~~~~~ 1944 (2512)
T 2vz8_A 1881 CPPHKSYVITGGLGGFGLQLAQWLRLRGAQ--KLVLTSRSGIRTGYQARQVREWRR--------------QGVQVLVSTS 1944 (2512)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCC--EEEEECSSCCCSHHHHHHHHHHHH--------------TTCEEEEECC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHHCCCC--EEEEEeCCCcchHHHHHHHHHHHh--------------CCCEEEEEec
Confidence 446899999999999999999999999865 47788887654322 222222211 2347889999
Q ss_pred CCCCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-cCCCceEEE
Q psy6053 178 DAEADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-MKHLELFVH 243 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~V~ 243 (614)
|+++++ +++.+++ .+|+|||+|+.... .+.++..+++|+.|+.++.+++.. ++...+||.
T Consensus 1945 Dvsd~~------~v~~~~~~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~ 2018 (2512)
T 2vz8_A 1945 NASSLD------GARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVI 2018 (2512)
T ss_dssp CSSSHH------HHHHHHHHHHHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHH------HHHHHHHHHHhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEE
Confidence 999865 5555543 58999999996532 234566789999999999888765 345679999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeec
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRP 323 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp 323 (614)
+||..+..... ....|+.+|+..+.+.+.....|+|...+-.
T Consensus 2019 iSS~ag~~g~~--------------------------------------g~~~Y~aaKaal~~l~~~rr~~Gl~~~a~~~ 2060 (2512)
T 2vz8_A 2019 FSSVSCGRGNA--------------------------------------GQANYGFANSAMERICEKRRHDGLPGLAVQW 2060 (2512)
T ss_dssp ECCHHHHTTCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHTTSCCCEEEE
T ss_pred ecchhhcCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 99986532110 0147999999999999876667999988888
Q ss_pred ceeec
Q psy6053 324 SIIIP 328 (614)
Q Consensus 324 ~~I~g 328 (614)
|.+.+
T Consensus 2061 g~~~~ 2065 (2512)
T 2vz8_A 2061 GAIGD 2065 (2512)
T ss_dssp CCBCT
T ss_pred cCcCC
Confidence 76643
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-08 Score=102.29 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=108.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCC----CccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSP----NVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~----~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.++|+||||+||+|.+++..|+..+. .+..|.++++.+. ...+|++.... .+.+. ... . .+
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~--~~~~~~~g~~~-----dl~~~----~~~-~---~~ 69 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNE--KAQKALQGVMM-----EIDDC----AFP-L---LA 69 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCH--HHHHHHHHHHH-----HHHTT----TCT-T---EE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCc--cccccchhhHH-----HHhhh----ccc-c---cC
Confidence 47999999999999999999998763 1235777766510 00122221000 01100 000 0 12
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCc-eEEEEeCce-eccCCc
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHISTAY-CHLQEK 254 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~V~vST~~-~~~~~~ 254 (614)
|+.... ++.+.++++|+|||+||..+- ..+..++...|+.+++++++.+.+..+.+ .|+++|.-. ....
T Consensus 70 ~i~~~~------~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~-- 141 (329)
T 1b8p_A 70 GMTAHA------DPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAY-- 141 (329)
T ss_dssp EEEEES------SHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH--
T ss_pred cEEEec------CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHH--
Confidence 333322 567778999999999997642 33445788999999999999999963245 788877521 1000
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc-CC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW-RE 332 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~-~~ 332 (614)
...+ .++.+. .-+.|+.|+.-..++....++ .|++..-++...|+|.. .+
T Consensus 142 ~~~~--------------------------~~~~~p--~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s 193 (329)
T 1b8p_A 142 IAMK--------------------------SAPSLP--AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPT 193 (329)
T ss_dssp HHHH--------------------------TCTTSC--GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTT
T ss_pred HHHH--------------------------HcCCCC--HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCCc
Confidence 0000 000000 013577787767666666555 47776777766666743 33
Q ss_pred CCccccC
Q psy6053 333 PLPGWTD 339 (614)
Q Consensus 333 p~~gw~d 339 (614)
-+|-|..
T Consensus 194 ~~p~~s~ 200 (329)
T 1b8p_A 194 MYADYRY 200 (329)
T ss_dssp CEEECSS
T ss_pred EeeehHH
Confidence 3455543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=82.06 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=70.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++|+|+|+ |++|+.+++.|++.| ..+|+++.|+. ++++.+. ..++..+.+|+++
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g--~~~v~~~~r~~------~~~~~~~----------------~~~~~~~~~d~~~ 59 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSS--NYSVTVADHDL------AALAVLN----------------RMGVATKQVDAKD 59 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCS--SEEEEEEESCH------HHHHHHH----------------TTTCEEEECCTTC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCC--CceEEEEeCCH------HHHHHHH----------------hCCCcEEEecCCC
Confidence 579999999 999999999999997 12488898863 3333321 1356778899987
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
++ ++.++++++|+|||+++.. .+.++++.|.+ .+++.+.
T Consensus 60 ~~------~~~~~~~~~d~vi~~~~~~---------------~~~~~~~~~~~-~g~~~~~ 98 (118)
T 3ic5_A 60 EA------GLAKALGGFDAVISAAPFF---------------LTPIIAKAAKA-AGAHYFD 98 (118)
T ss_dssp HH------HHHHHTTTCSEEEECSCGG---------------GHHHHHHHHHH-TTCEEEC
T ss_pred HH------HHHHHHcCCCEEEECCCch---------------hhHHHHHHHHH-hCCCEEE
Confidence 54 7888889999999998632 13568888888 4766554
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-07 Score=98.04 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=79.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||+||+|.+++..|+..+. +..+.+++++... +|++.... .+.+..+. ....+.+..+| +
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~----~~~~~~~~-----dl~~~~~~-~~~~~~i~~~~--d- 66 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHSI----NKLEGLRE-----DIYDALAG-TRSDANIYVES--D- 66 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGGH----HHHHHHHH-----HHHHHHTT-SCCCCEEEEEE--T-
T ss_pred CEEEEECCCChhHHHHHHHHHhCCC-CCEEEEEcCCCch----hhhHHHHH-----HHHHhHHh-cCCCeEEEeCC--c-
Confidence 5799999999999999999998864 3457777763221 22221000 00000010 11223333322 0
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
++.+.++++|+|||+||..+- .....+....|+.+++++++.+++. + +++++++|-
T Consensus 67 -------~l~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SN 123 (313)
T 1hye_A 67 -------ENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITN 123 (313)
T ss_dssp -------TCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSS
T ss_pred -------chHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecC
Confidence 134457899999999997642 3344567899999999999999996 6 889998885
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=97.04 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=82.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++|+||||+||+|..++..|+.+|. +.+|.++++.+. .....++.+. . ...++..+.+
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~-~~ev~l~Di~~~----~~~~~dL~~~-----------~-~~~~v~~~~~---- 66 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPL-VSVLHLYDVVNA----PGVTADISHM-----------D-TGAVVRGFLG---- 66 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTT-EEEEEEEESSSH----HHHHHHHHTS-----------C-SSCEEEEEES----
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEeCCCc----HhHHHHhhcc-----------c-ccceEEEEeC----
Confidence 47899999999999999999988763 345888876542 1111122110 0 1112332221
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
..++.+.++++|+|||+|+...- ..+..++...|+.+++++++.+.+. +.+.+++++|-
T Consensus 67 ------t~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SN 126 (326)
T 1smk_A 67 ------QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISN 126 (326)
T ss_dssp ------HHHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCS
T ss_pred ------CCCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECC
Confidence 23677888999999999997542 2333467899999999999999995 67889999875
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=89.81 Aligned_cols=119 Identities=11% Similarity=-0.014 Sum_probs=78.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+||||+||+|..++..|+..+. +.++.+++++.. .+|++... . .+.+..+ ...++.+..+| .
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~-~~el~L~Di~~~----~~~~~~~~-~----dl~~~~~--~~~~~~v~~~~---~ 65 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDK----EDDTVGQA-A----DTNHGIA--YDSNTRVRQGG---Y 65 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGG----HHHHHHHH-H----HHHHHHT--TTCCCEEEECC---G
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEcCCCC----hhhHHHHH-H----HHHHHHh--hCCCcEEEeCC---H
Confidence 5899999999999999999998765 345777776221 12232110 0 1111000 11233433332 1
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+.++++|+|||+|+...- .....++...|+.+++++++.+++. +.+.+++++|-
T Consensus 66 ----------~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SN 120 (303)
T 1o6z_A 66 ----------EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN 120 (303)
T ss_dssp ----------GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS
T ss_pred ----------HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 236799999999997642 3344567899999999999999995 78889998875
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=5.3e-06 Score=106.38 Aligned_cols=172 Identities=10% Similarity=0.043 Sum_probs=109.7
Q ss_pred ccCCcEEEEeccccc-ccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 99 TFTGKTLFMTGASGF-LGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 99 ~~~~~~VLITGaTGF-lG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.++||+++||||++. ||+.+++.|++.|.+ |++..|+.... ..+.++++ .++... ...++..+.+
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~---Vvi~~r~~~~~-~~~~~~~l---------~~~l~~-~G~~~~~v~~ 2198 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGAT---VIATTSRLDDD-RLAFYKQL---------YRDHAR-FDATLWVVPA 2198 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCE---EEEEESCCSHH-HHHHHHHH---------HHHHCC-TTCEEEEEEC
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCE---EEEEeCChhhh-hhHHHHHH---------HHHHhh-cCCeEEEEEe
Confidence 378999999999999 999999999999976 77888865321 11112222 111122 3357889999
Q ss_pred CCCCCCCCCCHHHHHHHh----c-------cccEEEEcccc----cC------------hhHHHHHHHHHhHHHHHHHHH
Q psy6053 178 DAEADELAIKESDRQLLA----S-------EVDIMIHGAAT----IR------------FDEALKKAVLLNTRGTKMMLS 230 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~----~-------~vd~ViH~AA~----v~------------~~~~~~~~~~~Nv~gt~~ll~ 230 (614)
|+++++ +.+.++ + .+|++||+||. .. ++...+..+++|+.++..+++
T Consensus 2199 Dvtd~~------~v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~ 2272 (3089)
T 3zen_D 2199 NMASYS------DIDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLIS 2272 (3089)
T ss_dssp CTTCHH------HHHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHH
T ss_pred cCCCHH------HHHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999976 666653 2 47999999997 11 222344568999999988887
Q ss_pred HHHHc---CCCc---eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHH
Q psy6053 231 LAKEM---KHLE---LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLS 304 (614)
Q Consensus 231 la~~~---~~~k---~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~a 304 (614)
.+... .+.. .++..+|.. .+. . +....|+.||+..
T Consensus 2273 ~~~~~m~~~~~g~~~~ii~~~ss~-~g~---~-----------------------------------g~~~aYsASKaAl 2313 (3089)
T 3zen_D 2273 GLSKIGAERDIASRLHVVLPGSPN-RGM---F-----------------------------------GGDGAYGEAKSAL 2313 (3089)
T ss_dssp HHHHHHHHTTCCCCEEEEEEECSS-TTS---C-----------------------------------SSCSSHHHHGGGH
T ss_pred HHHHHHHHcCCCceeEEEEECCcc-ccc---C-----------------------------------CCchHHHHHHHHH
Confidence 76542 1111 111111110 000 0 0114799999988
Q ss_pred HHHHHHHhhC-----CCCEEEeecceeecc
Q psy6053 305 EGLVVEAMNN-----GMPCLMLRPSIIIPV 329 (614)
Q Consensus 305 E~lv~~~~~~-----glp~~IvRp~~I~g~ 329 (614)
+.+.+..+.. ++.++.+-||.|-++
T Consensus 2314 ~~LtrslA~E~~~a~~IrVn~v~PG~v~tT 2343 (3089)
T 3zen_D 2314 DALENRWSAEKSWAERVSLAHALIGWTKGT 2343 (3089)
T ss_dssp HHHHHHHHHCSTTTTTEEEEEEECCCEECS
T ss_pred HHHHHHHHhccccCCCeEEEEEeecccCCC
Confidence 8877765542 577788888877543
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.14 E-value=6.7e-06 Score=88.66 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=74.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++++|+||| +|++|+++++.|++.|.+ |++..|.. ++.+++.+ ...++..+.+|++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~---V~v~~R~~------~~a~~la~--------------~~~~~~~~~~Dv~ 57 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIK---VTVACRTL------ESAKKLSA--------------GVQHSTPISLDVN 57 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCE---EEEEESSH------HHHHHTTT--------------TCTTEEEEECCTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCE---EEEEECCH------HHHHHHHH--------------hcCCceEEEeecC
Confidence 468999998 899999999999988754 88888863 23332211 1234678899998
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHH--HhH-------HHHHHHHHHHHHcCCCc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVL--LNT-------RGTKMMLSLAKEMKHLE 239 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~--~Nv-------~gt~~ll~la~~~~~~k 239 (614)
+.+ ++..+++++|+|||+|+......-....++ .|+ .++.+++++|++. +++
T Consensus 58 d~~------~l~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~a-Gv~ 118 (450)
T 1ff9_A 58 DDA------ALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDA-GIT 118 (450)
T ss_dssp CHH------HHHHHHTTSSEEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHT-TCE
T ss_pred CHH------HHHHHHcCCcEEEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHC-CCe
Confidence 754 788888899999999986433221122233 232 4688999999994 654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-06 Score=87.63 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=60.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+++||||+|++|++++..|++.|.+ |++..|.. +|.+++.+ .+.. . .++.++.+|+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~---V~i~~R~~------~~~~~l~~-----~~~~-----~-~~~~~~~~D~ 176 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE---VVLCGRKL------DKAQAAAD-----SVNK-----R-FKVNVTAAET 176 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESSH------HHHHHHHH-----HHHH-----H-HTCCCEEEEC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCE---EEEEECCH------HHHHHHHH-----HHHh-----c-CCcEEEEecC
Confidence 56899999999999999999999999854 88888863 23332211 1110 0 1345677899
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~ 207 (614)
++++ +++.+++++|+|||+|+.
T Consensus 177 ~~~~------~~~~~~~~~DvlVn~ag~ 198 (287)
T 1lu9_A 177 ADDA------SRAEAVKGAHFVFTAGAI 198 (287)
T ss_dssp CSHH------HHHHHTTTCSEEEECCCT
T ss_pred CCHH------HHHHHHHhCCEEEECCCc
Confidence 8755 788888999999999975
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.6e-05 Score=67.86 Aligned_cols=101 Identities=12% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++++|+|+|+ |.+|..+++.|.+.|.+ |+++.|.. ++++.+ .......+.+|.+
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~---v~~~d~~~------~~~~~~----------------~~~~~~~~~~d~~ 58 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGHE---VLAVDINE------EKVNAY----------------ASYATHAVIANAT 58 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCC---CEEEESCH------HHHHTT----------------TTTCSEEEECCTT
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCCE---EEEEeCCH------HHHHHH----------------HHhCCEEEEeCCC
Confidence 4578999998 99999999999999876 67777752 222211 1123456789987
Q ss_pred CCCCCCCHHHHHHH-hccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 181 ADELAIKESDRQLL-ASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 181 ~~~lGLs~~~~~~l-~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+++ .+.++ .+++|+||++++.. . +.|. .+.+.|++. ++++++..++.
T Consensus 59 ~~~------~l~~~~~~~~d~vi~~~~~~-~--------~~~~----~~~~~~~~~-~~~~ii~~~~~ 106 (144)
T 2hmt_A 59 EEN------ELLSLGIRNFEYVIVAIGAN-I--------QAST----LTTLLLKEL-DIPNIWVKAQN 106 (144)
T ss_dssp CHH------HHHTTTGGGCSEEEECCCSC-H--------HHHH----HHHHHHHHT-TCSEEEEECCS
T ss_pred CHH------HHHhcCCCCCCEEEECCCCc-h--------HHHH----HHHHHHHHc-CCCeEEEEeCC
Confidence 643 56554 67899999998752 0 1222 356667775 56666655544
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.7e-05 Score=75.70 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=54.4
Q ss_pred CCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhc
Q psy6053 101 TGKTLFMTGA----------------SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVH 164 (614)
Q Consensus 101 ~~~~VLITGa----------------TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~ 164 (614)
+||+|||||| ||.+|..+++.++++|.+ |.++.|+..-..
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~---V~lv~~~~~~~~--------------------- 57 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYE---VCLITTKRALKP--------------------- 57 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCE---EEEEECTTSCCC---------------------
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCE---EEEEeCCccccc---------------------
Confidence 5899999999 999999999999999987 888888753211
Q ss_pred cccccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChh
Q psy6053 165 GQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFD 211 (614)
Q Consensus 165 p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~ 211 (614)
. ...++..+..+-.+.- .+.....+.++|++||+||...|.
T Consensus 58 -~-~~~~~~~~~v~s~~em----~~~v~~~~~~~Dili~aAAvsD~~ 98 (232)
T 2gk4_A 58 -E-PHPNLSIREITNTKDL----LIEMQERVQDYQVLIHSMAVSDYT 98 (232)
T ss_dssp -C-CCTTEEEEECCSHHHH----HHHHHHHGGGCSEEEECSBCCSEE
T ss_pred -c-CCCCeEEEEHhHHHHH----HHHHHHhcCCCCEEEEcCcccccc
Confidence 0 1134555544321100 012233345799999999987664
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00017 Score=73.82 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=75.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|+||+|++|..++..|+..|. +..|.++++.+ .+....++.+. . ...++....+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~-~~ev~L~Di~~----~~~~a~dL~~~-----------~-~~~~l~~~~~----- 58 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAH----TPGVAADLSHI-----------E-TRATVKGYLG----- 58 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSS----HHHHHHHHTTS-----------S-SSCEEEEEES-----
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CcEEEEEeCCc----cHHHHHHHhcc-----------C-cCceEEEecC-----
Confidence 5799999999999999999988763 45699999875 11111122110 0 1113333322
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCc-eEEEE
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k-~~V~v 244 (614)
..++++.++++|+||++|+... ..+...+....|+..++.+++.+.+. ... .++.+
T Consensus 59 -----t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 116 (314)
T 1mld_A 59 -----PEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICII 116 (314)
T ss_dssp -----GGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred -----CCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEE
Confidence 0157777899999999998764 22333456789999999999998885 344 44443
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.1e-05 Score=83.38 Aligned_cols=119 Identities=16% Similarity=0.110 Sum_probs=73.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccE-----EEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKK-----IYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~-----V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.++|.||||+|++|.+++..|+..+. +.+ |+++++.+....++....++.+. ..| ....+..
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~-~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~--------~~~--~~~~~~~-- 69 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSV-FGKDQPIILVLLDITPMMGVLDGVLMELQDC--------ALP--LLKDVIA-- 69 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTT-TCTTCCEEEEEECCGGGHHHHHHHHHHHHHT--------CCT--TEEEEEE--
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCC-ccccCCCEEEEEeCCCccccchhhHhhhHhh--------hhc--ccCCEEE--
Confidence 47899999999999999999987653 233 77777753211111111122110 001 1111111
Q ss_pred CCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCc--eEEEEe
Q psy6053 177 GDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLE--LFVHIS 245 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k--~~V~vS 245 (614)
.. +..+.++++|+|||+||..+ ..++..+.++.|+..++++++.+++. +.+ .++.+|
T Consensus 70 -----~~------~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~-~~~~~~vivvs 129 (333)
T 5mdh_A 70 -----TD------KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY-AKKSVKVIVVG 129 (333)
T ss_dssp -----ES------CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH-SCTTCEEEECS
T ss_pred -----cC------CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcC
Confidence 11 23455689999999998753 23444567899999999999999996 444 355444
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.001 Score=69.16 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=59.7
Q ss_pred cCCcEEEEecccccccHHHHHHHH-hhCCCccEEEEEEccCCCcC-----H----HHHHHHHHhChhhHHhhhhcccccc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKIL-RKSPNVKKIYILMRQKKGKN-----A----RQRIEELFASPLFNLLKSVHGQKII 169 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll-~~g~~v~~V~~LvR~~~~~~-----~----~~Rl~~~~~~~~f~~l~~~~p~~~~ 169 (614)
..+|+||||||+.-+|.+....|. +.|.+ |.++.|.+.... + .+-+.+. +++ ..
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~---vi~v~~~~~~~~~~~atag~~~~~a~~~~--------i~~-----~G 111 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAA---TIGVSFEKAGSETKYGTPGWYNNLAFDEA--------AKR-----EG 111 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCE---EEEEECCCCCCSSSCCCHHHHHHHHHHHH--------HHH-----HT
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCC---EEEEecCCcccccccccccchhHHHHHHH--------HHH-----cC
Confidence 457999999999999999998887 66655 677776653321 0 0111111 111 33
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhc-------cccEEEEccccc
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLAS-------EVDIMIHGAATI 208 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v 208 (614)
.+...+.+|+++++ ..+++++ ++|+++|++|..
T Consensus 112 ~~a~~i~~Dv~d~e------~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 112 LYSVTIDGDAFSDE------IKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp CCEEEEESCTTSHH------HHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred CCceeEeCCCCCHH------HHHHHHHHHHHhcCCCCEEEEecccc
Confidence 56889999999865 6666654 689999999964
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00029 Score=62.78 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=55.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+++|+|+|+ |.+|+.+++.|.+.|++ |+++.|.+ ++++++. ...+.++.||.+
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~---V~~id~~~------~~~~~~~----------------~~~~~~~~gd~~ 58 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKK---VLAVDKSK------EKIELLE----------------DEGFDAVIADPT 58 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCC---EEEEESCH------HHHHHHH----------------HTTCEEEECCTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCe---EEEEECCH------HHHHHHH----------------HCCCcEEECCCC
Confidence 3578999997 99999999999999887 78888753 3333331 134678899999
Q ss_pred CCCCCCCHHHHHHH-hccccEEEEccc
Q psy6053 181 ADELAIKESDRQLL-ASEVDIMIHGAA 206 (614)
Q Consensus 181 ~~~lGLs~~~~~~l-~~~vd~ViH~AA 206 (614)
+++ .++.+ .+++|+||.+.+
T Consensus 59 ~~~------~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 59 DES------FYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CHH------HHHHSCCTTCSEEEECCS
T ss_pred CHH------HHHhCCcccCCEEEEecC
Confidence 865 55554 457999998776
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0002 Score=63.34 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=62.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+|+|+ |++|..+++.|.+.|++ |.++.|.+ ++++++.+ ..++.++.+|.++
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~---v~~~d~~~------~~~~~~~~---------------~~~~~~~~~d~~~ 58 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHD---IVLIDIDK------DICKKASA---------------EIDALVINGDCTK 58 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------------HCSSEEEESCTTS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe---EEEEECCH------HHHHHHHH---------------hcCcEEEEcCCCC
Confidence 578999986 99999999999999865 78888753 22322210 0135678899876
Q ss_pred CCCCCCHHHHHHH-hccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 182 DELAIKESDRQLL-ASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l-~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
++ .+... ++++|+||++.... ..| ..+.+.++.. +.++++.
T Consensus 59 ~~------~l~~~~~~~~d~vi~~~~~~----------~~~----~~~~~~~~~~-~~~~ii~ 100 (140)
T 1lss_A 59 IK------TLEDAGIEDADMYIAVTGKE----------EVN----LMSSLLAKSY-GINKTIA 100 (140)
T ss_dssp HH------HHHHTTTTTCSEEEECCSCH----------HHH----HHHHHHHHHT-TCCCEEE
T ss_pred HH------HHHHcCcccCCEEEEeeCCc----------hHH----HHHHHHHHHc-CCCEEEE
Confidence 54 44433 56899999997531 122 2455667775 5556654
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00025 Score=76.62 Aligned_cols=112 Identities=14% Similarity=0.226 Sum_probs=70.1
Q ss_pred cccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 96 i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
+....++++|+|+|| |++|+.+++.|++.+ .. +|++..|.. ++.+++.+ . .++..+
T Consensus 17 ~~~~l~~k~VlIiGA-GgiG~aia~~L~~~~-g~-~V~v~~R~~------~ka~~la~--------------~-~~~~~~ 72 (467)
T 2axq_A 17 IEGRHMGKNVLLLGS-GFVAQPVIDTLAAND-DI-NVTVACRTL------ANAQALAK--------------P-SGSKAI 72 (467)
T ss_dssp ------CEEEEEECC-STTHHHHHHHHHTST-TE-EEEEEESSH------HHHHHHHG--------------G-GTCEEE
T ss_pred cccCCCCCEEEEECC-hHHHHHHHHHHHhCC-CC-eEEEEECCH------HHHHHHHH--------------h-cCCcEE
Confidence 333456789999997 999999999999873 22 588888863 33333321 1 235667
Q ss_pred eCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHH-------h--HHHHHHHHHHHHHcCCC
Q psy6053 176 SGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLL-------N--TRGTKMMLSLAKEMKHL 238 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~-------N--v~gt~~ll~la~~~~~~ 238 (614)
.+|+.+.+ ++..+++++|+|||+++......-....++. | ...+.++++.|++. ++
T Consensus 73 ~~D~~d~~------~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~a-Gv 137 (467)
T 2axq_A 73 SLDVTDDS------ALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKA-GI 137 (467)
T ss_dssp ECCTTCHH------HHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHH-TC
T ss_pred EEecCCHH------HHHHHHcCCCEEEECCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHc-CC
Confidence 88988754 6778888999999998864221111122221 1 13457778888874 54
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0002 Score=69.39 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.5
Q ss_pred cCCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGA----------------SGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGa----------------TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
++||+|||||| ||.+|..+++.|++.|.+ |+++.|+.
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~---V~l~~~~~ 58 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN---VTLVSGPV 58 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE---EEEEECSC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCE---EEEEECCc
Confidence 57999999999 799999999999999987 77777764
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=76.22 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=67.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCc-cEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNV-KKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v-~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
++|+|+|| |++|+.+++.|++.|. + .+|.+..|+. ++.+++.+ .+... ...++..+.+|+++
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~-~~~~V~v~~r~~------~~~~~la~-----~l~~~----~~~~~~~~~~D~~d 64 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNRE-VFSHITLASRTL------SKCQEIAQ-----SIKAK----GYGEIDITTVDADS 64 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTT-TCCEEEEEESCH------HHHHHHHH-----HHHHT----TCCCCEEEECCTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEEECCH------HHHHHHHH-----Hhhhh----cCCceEEEEecCCC
Confidence 68999999 9999999999999853 3 4688888864 23332211 01000 11358889999998
Q ss_pred CCCCCCHHHHHHHhcc--ccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCc
Q psy6053 182 DELAIKESDRQLLASE--VDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLE 239 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k 239 (614)
++ ++++++++ +|+|||+|+... . ..+++.|.+. ++.
T Consensus 65 ~~------~l~~~l~~~~~DvVin~ag~~~---~------------~~v~~a~l~~-g~~ 102 (405)
T 4ina_A 65 IE------ELVALINEVKPQIVLNIALPYQ---D------------LTIMEACLRT-GVP 102 (405)
T ss_dssp HH------HHHHHHHHHCCSEEEECSCGGG---H------------HHHHHHHHHH-TCC
T ss_pred HH------HHHHHHHhhCCCEEEECCCccc---C------------hHHHHHHHHh-CCC
Confidence 65 88888887 899999998531 1 3567778774 443
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00016 Score=72.56 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=26.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEE-EEEcc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIY-ILMRQ 138 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~-~LvR~ 138 (614)
++++|.|+|+||.+|+.+++.+++. ++. ++. +..|+
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~-~~~-elva~~d~~ 40 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALAL-EGV-QLGAALERE 40 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHS-TTE-ECCCEECCT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhC-CCC-EEEEEEecC
Confidence 3578999999999999999998865 443 344 44444
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00061 Score=71.24 Aligned_cols=94 Identities=14% Similarity=0.234 Sum_probs=66.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|+|.|| |++|+.+++.|.+. ++ |.+.+|+. ++++++ .+.+..+..|+.+
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~~-~~---v~~~~~~~------~~~~~~-----------------~~~~~~~~~d~~d 67 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKDE-FD---VYIGDVNN------ENLEKV-----------------KEFATPLKVDASN 67 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTT-SE---EEEEESCH------HHHHHH-----------------TTTSEEEECCTTC
T ss_pred ccEEEEECC-CHHHHHHHHHHhcC-CC---eEEEEcCH------HHHHHH-----------------hccCCcEEEecCC
Confidence 468999998 99999999988765 55 77777753 233322 2345677889987
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
++ .+.++++++|+||++++.. +. ..++++|.+. ++ .|+..++
T Consensus 68 ~~------~l~~~~~~~DvVi~~~p~~-~~--------------~~v~~~~~~~-g~---~yvD~s~ 109 (365)
T 3abi_A 68 FD------KLVEVMKEFELVIGALPGF-LG--------------FKSIKAAIKS-KV---DMVDVSF 109 (365)
T ss_dssp HH------HHHHHHTTCSEEEECCCGG-GH--------------HHHHHHHHHH-TC---EEEECCC
T ss_pred HH------HHHHHHhCCCEEEEecCCc-cc--------------chHHHHHHhc-Cc---ceEeeec
Confidence 65 8999999999999998653 11 2477888885 32 4555444
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0007 Score=61.29 Aligned_cols=78 Identities=10% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+++|+|.|+ |.+|+.+++.|.+.|++ |.++.|... ...+++.+. ...++.++.||.+
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~---V~vid~~~~--~~~~~~~~~----------------~~~~~~~i~gd~~ 59 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQN---VTVISNLPE--DDIKQLEQR----------------LGDNADVIPGDSN 59 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCC---EEEEECCCH--HHHHHHHHH----------------HCTTCEEEESCTT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCC---EEEEECCCh--HHHHHHHHh----------------hcCCCeEEEcCCC
Confidence 3568999996 99999999999999877 788887521 111222221 1235789999998
Q ss_pred CCCCCCCHHHHHHH-hccccEEEEccc
Q psy6053 181 ADELAIKESDRQLL-ASEVDIMIHGAA 206 (614)
Q Consensus 181 ~~~lGLs~~~~~~l-~~~vd~ViH~AA 206 (614)
+++ .+.++ ++++|.||-+..
T Consensus 60 ~~~------~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 60 DSS------VLKKAGIDRCRAILALSD 80 (153)
T ss_dssp SHH------HHHHHTTTTCSEEEECSS
T ss_pred CHH------HHHHcChhhCCEEEEecC
Confidence 865 66665 789999997754
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00033 Score=72.41 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=73.2
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+|+++++|.|+||+|++|..++..|+..|. ..+|.++++.... ++....++.+.. .+. .++.+ .
T Consensus 4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~~~k--~~g~a~DL~~~~--------~~~---~~i~~-t- 67 (343)
T 3fi9_A 4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPFAVG--LEGVAEEIRHCG--------FEG---LNLTF-T- 67 (343)
T ss_dssp CCSCSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSCHHH--HHHHHHHHHHHC--------CTT---CCCEE-E-
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCCchh--HHHHHHhhhhCc--------CCC---CceEE-c-
Confidence 678889999999999999999999998874 2348888874311 111111111100 010 12221 1
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCce
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLEL 240 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~ 240 (614)
.++.+.++++|+||++||..+ ..++..+.+..|+...+.+.+.+.+. ..+.
T Consensus 68 -----------~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~-~p~a 119 (343)
T 3fi9_A 68 -----------SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSY-CPDC 119 (343)
T ss_dssp -----------SCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHH-CTTC
T ss_pred -----------CCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCc
Confidence 145666789999999999753 23445577899999999999999885 4444
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0016 Score=59.13 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=54.0
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
++...+++|+|.|+ |.+|..+++.|.+.|.+ |+++.|..... +. ++ ...++.++.
T Consensus 14 ~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~---V~vid~~~~~~------~~---------~~------~~~g~~~~~ 68 (155)
T 2g1u_A 14 SKKQKSKYIVIFGC-GRLGSLIANLASSSGHS---VVVVDKNEYAF------HR---------LN------SEFSGFTVV 68 (155)
T ss_dssp ---CCCCEEEEECC-SHHHHHHHHHHHHTTCE---EEEEESCGGGG------GG---------SC------TTCCSEEEE
T ss_pred hcccCCCcEEEECC-CHHHHHHHHHHHhCCCe---EEEEECCHHHH------HH---------HH------hcCCCcEEE
Confidence 44456789999995 99999999999999865 88888864321 10 00 012456778
Q ss_pred CCCCCCCCCCCHHHHHHH-hccccEEEEcccc
Q psy6053 177 GDAEADELAIKESDRQLL-ASEVDIMIHGAAT 207 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l-~~~vd~ViH~AA~ 207 (614)
+|..+++ .+... ++++|+||.+.+.
T Consensus 69 ~d~~~~~------~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 69 GDAAEFE------TLKECGMEKADMVFAFTND 94 (155)
T ss_dssp SCTTSHH------HHHTTTGGGCSEEEECSSC
T ss_pred ecCCCHH------HHHHcCcccCCEEEEEeCC
Confidence 8877643 45544 5789999998764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0048 Score=57.37 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=55.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
..+++|+|.| .|.+|..+++.|.+. |++ |+++.|.+ ++++++. ..++.++.||
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~---V~vid~~~------~~~~~~~----------------~~g~~~~~gd 90 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYGKI---SLGIEIRE------EAAQQHR----------------SEGRNVISGD 90 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHCSC---EEEEESCH------HHHHHHH----------------HTTCCEEECC
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccCCe---EEEEECCH------HHHHHHH----------------HCCCCEEEcC
Confidence 3467899998 599999999999998 887 78888753 3333321 1245678899
Q ss_pred CCCCCCCCCHHHHHHH--hccccEEEEcccc
Q psy6053 179 AEADELAIKESDRQLL--ASEVDIMIHGAAT 207 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l--~~~vd~ViH~AA~ 207 (614)
.++++ .+.++ ++++|+||.+.+.
T Consensus 91 ~~~~~------~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 91 ATDPD------FWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp TTCHH------HHHTBCSCCCCCEEEECCSS
T ss_pred CCCHH------HHHhccCCCCCCEEEEeCCC
Confidence 88754 56665 6789999987653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0049 Score=58.05 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.|++|+||||+|-+|..+++.+...|.+ |++..|+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~---V~~~~~~ 72 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGAR---IYTTAGS 72 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCE---EEEEESS
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCE---EEEEeCC
Confidence 5789999999999999999999988854 8888875
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.042 Score=55.82 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=74.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|+||+|.+|..++..|..+.+-+..+.++++.+ . ......++.+. . ...++..+.+ ++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~--~~G~a~Dl~~~-----------~-~~~~v~~~~~--~~- 62 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-V--TPGVAVDLSHI-----------P-TAVKIKGFSG--ED- 62 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-T--HHHHHHHHHTS-----------C-SSEEEEEECS--SC-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-C--chhHHHHhhCC-----------C-CCceEEEecC--CC-
Confidence 5799999999999999988877622235788888876 2 11112222110 0 1123333322 11
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+ ...++++|+||-+|+..+ ......++++.|+.-.+.+.+.+.+. ..+.++.+-|
T Consensus 63 -------~-~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvt 118 (312)
T 3hhp_A 63 -------A-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIIT 118 (312)
T ss_dssp -------C-HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred -------c-HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEec
Confidence 2 245689999999999764 34456778899999999999988885 4444444333
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0094 Score=57.15 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=53.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+|+|+ |.+|+.+++.|.+.|++ |.++.|.+ ++++++. ...++.++.||.+++
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~---v~vid~~~------~~~~~l~---------------~~~~~~~i~gd~~~~ 55 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYG---VVIINKDR------ELCEEFA---------------KKLKATIIHGDGSHK 55 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCC---EEEEESCH------HHHHHHH---------------HHSSSEEEESCTTSH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCe---EEEEECCH------HHHHHHH---------------HHcCCeEEEcCCCCH
Confidence 57999996 99999999999999887 77888753 3333321 112467899999986
Q ss_pred CCCCCHHHHHHH-hccccEEEEccc
Q psy6053 183 ELAIKESDRQLL-ASEVDIMIHGAA 206 (614)
Q Consensus 183 ~lGLs~~~~~~l-~~~vd~ViH~AA 206 (614)
+ .+.++ ++++|+||-+..
T Consensus 56 ~------~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 56 E------ILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp H------HHHHHTCCTTCEEEECCS
T ss_pred H------HHHhcCcccCCEEEEecC
Confidence 5 56665 678999996543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.014 Score=51.81 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=53.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|+|.|+ |.+|..+++.|.+.|++ |+++.+.+ ++++++. ..++.++.||.+++
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~---v~vid~~~------~~~~~~~----------------~~g~~~i~gd~~~~ 61 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIP---LVVIETSR------TRVDELR----------------ERGVRAVLGNAANE 61 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCC---EEEEESCH------HHHHHHH----------------HTTCEEEESCTTSH
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCC---EEEEECCH------HHHHHHH----------------HcCCCEEECCCCCH
Confidence 57999996 99999999999999887 88888863 3444331 13567899999986
Q ss_pred CCCCCHHHHHHH-hccccEEEEccc
Q psy6053 183 ELAIKESDRQLL-ASEVDIMIHGAA 206 (614)
Q Consensus 183 ~lGLs~~~~~~l-~~~vd~ViH~AA 206 (614)
+ .++.+ ++++|.||-+..
T Consensus 62 ~------~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 62 E------IMQLAHLECAKWLILTIP 80 (140)
T ss_dssp H------HHHHTTGGGCSEEEECCS
T ss_pred H------HHHhcCcccCCEEEEECC
Confidence 5 45544 468999987654
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.013 Score=59.78 Aligned_cols=85 Identities=19% Similarity=0.146 Sum_probs=53.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++++|+|| |-+|+.++..|.+.|. ++|++..|.++.. +|.+++.+ .+... ....+.++ ++
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga--~~V~i~nR~~~~~---~~a~~la~-----~~~~~----~~~~~~~~--~~ 214 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGV--KEISIFNRKDDFY---ANAEKTVE-----KINSK----TDCKAQLF--DI 214 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSSTTH---HHHHHHHH-----HHHHH----SSCEEEEE--ET
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCC--CEEEEEECCCchH---HHHHHHHH-----Hhhhh----cCCceEEe--cc
Confidence 46899999997 8899999999999875 3699999985432 23332211 11110 11123333 34
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~ 207 (614)
.+. +++.+.+.++|+||++...
T Consensus 215 ~~~------~~l~~~l~~aDiIINaTp~ 236 (315)
T 3tnl_A 215 EDH------EQLRKEIAESVIFTNATGV 236 (315)
T ss_dssp TCH------HHHHHHHHTCSEEEECSST
T ss_pred chH------HHHHhhhcCCCEEEECccC
Confidence 332 2566777899999998653
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.017 Score=58.43 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=32.2
Q ss_pred cCCcE-EEEe-ccc-----------------ccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKT-LFMT-GAS-----------------GFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~-VLIT-GaT-----------------GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
.+|++ |||| ||| |-+|..+++.++++|++ |..+.|+.+
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~---V~lv~g~~s 90 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYG---VLFLYRARS 90 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCE---EEEEEETTS
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCE---EEEEecCCC
Confidence 46777 9999 567 99999999999999987 778888654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.11 Score=52.93 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=75.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|.|+|+ |.+|..++..|+..|. +..|.++++.. ++++.... .+.+..|- ....+.+..+|.
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~-~~~l~l~D~~~------~k~~g~a~-----DL~~~~~~-~~~~v~i~~~~~-- 68 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGI-TDELVVIDVNK------EKAMGDVM-----DLNHGKAF-APQPVKTSYGTY-- 68 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH------HHHHHHHH-----HHHHTGGG-SSSCCEEEEECG--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEecch------HHHHHHHH-----HHHhcccc-ccCCeEEEeCcH--
Confidence 578999996 9999999999999875 34688888742 22221000 01111111 112344444432
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+.++++|+||.+|+..+ ..++..+.+..|+.-.+.+.+.+.+. ..+.++.+-|
T Consensus 69 -----------~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvt 122 (326)
T 3pqe_A 69 -----------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVAT 122 (326)
T ss_dssp -----------GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred -----------HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcC
Confidence 24578999999999754 23445677899999999999999885 4455554443
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0047 Score=58.84 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=29.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
|+|+|+||+|++|+.+++.|++.|++ |++..|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~---V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHE---IVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 57999999999999999999999865 88888863
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.028 Score=55.21 Aligned_cols=115 Identities=11% Similarity=0.153 Sum_probs=69.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-------------HHHHHHHHhChhhHHhhhhcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-------------RQRIEELFASPLFNLLKSVHG 165 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-------------~~Rl~~~~~~~~f~~l~~~~p 165 (614)
..++++|+|.|+ |-+|+.+++.|.+.| +.+|.++++..-..+- +.|.+.+ -++++...|
T Consensus 28 ~l~~~~VlVvG~-Gg~G~~va~~La~~G--v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~-----~~~l~~~np 99 (249)
T 1jw9_B 28 ALKDSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESA-----RDALTRINP 99 (249)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHH-----HHHHHHHCT
T ss_pred HHhCCeEEEEee-CHHHHHHHHHHHHcC--CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHH-----HHHHHHHCC
Confidence 355789999995 779999999999998 4578888887511000 0111111 112222233
Q ss_pred ccccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 166 QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 166 ~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
. -+++.+..++++ +...++++++|+||.+... +.. -..+.++|++. + +++|+.+
T Consensus 100 ~---~~v~~~~~~~~~-------~~~~~~~~~~DvVi~~~d~--~~~------------~~~l~~~~~~~-~-~p~i~~~ 153 (249)
T 1jw9_B 100 H---IAITPVNALLDD-------AELAALIAEHDLVLDCTDN--VAV------------RNQLNAGCFAA-K-VPLVSGA 153 (249)
T ss_dssp T---SEEEEECSCCCH-------HHHHHHHHTSSEEEECCSS--HHH------------HHHHHHHHHHH-T-CCEEEEE
T ss_pred C---cEEEEEeccCCH-------hHHHHHHhCCCEEEEeCCC--HHH------------HHHHHHHHHHc-C-CCEEEee
Confidence 3 356777776653 3567778899999988643 111 13355667764 3 4677765
Q ss_pred Cc
Q psy6053 246 TA 247 (614)
Q Consensus 246 T~ 247 (614)
+.
T Consensus 154 ~~ 155 (249)
T 1jw9_B 154 AI 155 (249)
T ss_dssp EE
T ss_pred ec
Confidence 44
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.037 Score=54.40 Aligned_cols=115 Identities=8% Similarity=0.101 Sum_probs=68.6
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-------------HHHHHHHHhChhhHHhhhhcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-------------RQRIEELFASPLFNLLKSVHG 165 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-------------~~Rl~~~~~~~~f~~l~~~~p 165 (614)
..++++|+|.|+ |-+|+.+++.|.+.| |.+|.+.++..-..+- +.|.+. .-+++++..|
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~G--vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~-----~~~~l~~~np 96 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAG--VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQV-----SQQRLTQLNP 96 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTT--CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHH-----HHHHHHHHCT
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcC--CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHH-----HHHHHHHHCC
Confidence 356789999997 559999999999998 5578887654311000 001111 1112333333
Q ss_pred ccccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 166 QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 166 ~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
. -+++.+..+++. +....+++++|+||.+... +.. -..+-++|.+. + +++|+.+
T Consensus 97 ~---~~v~~~~~~~~~-------~~~~~~~~~~DvVi~~~d~--~~~------------r~~l~~~~~~~-~-~p~i~~~ 150 (251)
T 1zud_1 97 D---IQLTALQQRLTG-------EALKDAVARADVVLDCTDN--MAT------------RQEINAACVAL-N-TPLITAS 150 (251)
T ss_dssp T---SEEEEECSCCCH-------HHHHHHHHHCSEEEECCSS--HHH------------HHHHHHHHHHT-T-CCEEEEE
T ss_pred C---CEEEEEeccCCH-------HHHHHHHhcCCEEEECCCC--HHH------------HHHHHHHHHHh-C-CCEEEEe
Confidence 3 456666665543 4577788899999987542 211 12355667763 3 5678776
Q ss_pred Cc
Q psy6053 246 TA 247 (614)
Q Consensus 246 T~ 247 (614)
+.
T Consensus 151 ~~ 152 (251)
T 1zud_1 151 AV 152 (251)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.069 Score=54.55 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=64.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+++|.|+|| |.+|..++..|+..+. +..|.++++.. ++++.... .+.+..+ ....+.+..+|.
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~------~k~~g~a~-----DL~~~~~--~~~~~~i~~~~~- 71 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGI-AQEIGIVDIFK------DKTKGDAI-----DLEDALP--FTSPKKIYSAEY- 71 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH------HHHHHHHH-----HHHTTGG--GSCCCEEEECCG-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCCh------HHHHHHHh-----hHhhhhh--hcCCcEEEECcH-
Confidence 4578999996 9999999999998865 35788888742 22221100 0111111 112344444432
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+.++++|+||++|+..+ ..++..++++.|+.-.+.+.+.+.+. ..+.++.+-|
T Consensus 72 ------------~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvt 125 (326)
T 3vku_A 72 ------------SDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAA 125 (326)
T ss_dssp ------------GGGTTCSEEEECCCCC----------------CHHHHHHHHHTT-TCCSEEEECS
T ss_pred ------------HHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEcc
Confidence 23678999999999754 23445567889999999999998885 4455554433
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.15 Score=52.48 Aligned_cols=117 Identities=19% Similarity=0.104 Sum_probs=72.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCc-----cEEEEEEccCCCcCHHHHHH----HHHhChhhHHhhhhccccccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNV-----KKIYILMRQKKGKNARQRIE----ELFASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v-----~~V~~LvR~~~~~~~~~Rl~----~~~~~~~f~~l~~~~p~~~~~ 170 (614)
.+.-+|.||||+|.+|..|+-.|... +=+ ..+.+++..+.. ..++ ++-... ...
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~----~~~~Gva~DL~~~~------------~~~ 84 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPAL----KALAGVEAELEDCA------------FPL 84 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGH----HHHHHHHHHHHHTT------------CTT
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCcc----ccchhhhhhhhhcC------------ccC
Confidence 34468999999999999998877654 211 257777765421 2222 111110 111
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
....+.++ +....++++|+||=+||..+ ...+..++++.|..-.+.+.+...+......+|.+
T Consensus 85 ~~~~~~~~-----------~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlv 148 (345)
T 4h7p_A 85 LDKVVVTA-----------DPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVV 148 (345)
T ss_dssp EEEEEEES-----------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCcEEEcC-----------ChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEE
Confidence 22223222 23456789999999999764 34566788999999999999988774333344443
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.037 Score=56.57 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=31.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-.+++|+||||+|.+|..+++.+...|. +|++..|+.
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~Vi~~~~~~ 180 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLGA---TVIGTVSTE 180 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4578999999999999999999988875 488888863
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.048 Score=55.72 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.7
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.-.|++|+||||+|-+|..+++.+...|.+ |++..|+
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~---V~~~~~~ 179 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCK---VVGAAGS 179 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCE---EEEEeCC
Confidence 345899999999999999999999888754 8888875
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.035 Score=56.61 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=31.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
-.|++|+||||+|.+|..+++.+...|.+ |++..|+
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~---V~~~~~~ 174 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALGAK---LIGTVGT 174 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCE---EEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCE---EEEEeCC
Confidence 45889999999999999999999988854 8888886
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.024 Score=58.50 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=31.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-.|++||||||+|-+|..+++.+...|. +|++..|+.
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~V~~~~~~~ 204 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGY---RVLGIDGGE 204 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECST
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---cEEEEcCCH
Confidence 4578999999999999999998888875 488888864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.018 Score=60.15 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=52.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+++|+|+|+ |-+|..+++.+...|.+ |++..|+. +|++...+ . .... +.+|.
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~---V~~~d~~~------~~~~~~~~---------~----~g~~---~~~~~ 217 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQ---VTILDVNH------KRLQYLDD---------V----FGGR---VITLT 217 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----TTTS---EEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCE---EEEEECCH------HHHHHHHH---------h----cCce---EEEec
Confidence 56799999999 99999999999999864 88888863 23322211 0 1111 23444
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATI 208 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v 208 (614)
++. ++++++++++|+||++++..
T Consensus 218 ~~~------~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 218 ATE------ANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp CCH------HHHHHHHHHCSEEEECCC--
T ss_pred CCH------HHHHHHHhCCCEEEECCCCC
Confidence 443 36778888999999998853
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.037 Score=57.23 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=28.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCC----CccEEEEEEcc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSP----NVKKIYILMRQ 138 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~----~v~~V~~LvR~ 138 (614)
+.++|+|.||||.+|+.|++.|+++++ ++ +|.++.+.
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~ 48 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAA 48 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEES
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECC
Confidence 357999999999999999999987631 43 46777654
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.019 Score=59.25 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=27.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEE
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM 136 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv 136 (614)
++|+|.||||.+|+.+++.|+++++....|.++.
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~ 40 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 40 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 6799999999999999999987665545566665
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.13 Score=51.49 Aligned_cols=120 Identities=15% Similarity=0.213 Sum_probs=70.8
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhC---------hhhHHhhhhccccc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFAS---------PLFNLLKSVHGQKI 168 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~---------~~f~~l~~~~p~~~ 168 (614)
+..++++|+|.|+ |-+|+.+++.|.+.| |.+|.+.++..=..+...|. ++.. ..-+++++-+|+
T Consensus 32 ~kL~~~~VlVvGa-GGlGs~va~~La~aG--VG~i~lvD~D~Ve~sNL~Rq--~~~~~diG~~Ka~aa~~~L~~iNP~-- 104 (292)
T 3h8v_A 32 EKIRTFAVAIVGV-GGVGSVTAEMLTRCG--IGKLLLFDYDKVELANMNRL--FFQPHQAGLSKVQAAEHTLRNINPD-- 104 (292)
T ss_dssp CGGGGCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBC--------------CCTTSBHHHHHHHHHHHHCTT--
T ss_pred HHHhCCeEEEECc-CHHHHHHHHHHHHcC--CCEEEEECCCccChhhcccc--cCChhhcCchHHHHHHHHHHhhCCC--
Confidence 4466789999995 669999999999998 66898888765333223331 1110 112234444454
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHh-----------ccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCC
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLA-----------SEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKH 237 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~-----------~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~ 237 (614)
-+++.+..+++..+ .++.++ +++|+|+.+.-. +... ..+-++|.+. +
T Consensus 105 -v~v~~~~~~l~~~~------~~~~~~~~~~~~~l~~~~~~DlVid~~Dn--~~~R------------~~in~~c~~~-~ 162 (292)
T 3h8v_A 105 -VLFEVHNYNITTVE------NFQHFMDRISNGGLEEGKPVDLVLSCVDN--FEAR------------MTINTACNEL-G 162 (292)
T ss_dssp -SEEEEECCCTTSHH------HHHHHHHHHHHBSSSTTBCCSEEEECCSS--HHHH------------HHHHHHHHHH-T
T ss_pred -cEEEEecccCCcHH------HHHHHhhhhcccccccCCCCCEEEECCcc--hhhh------------hHHHHHHHHh-C
Confidence 56777877777532 445443 589999977432 2211 2355677774 3
Q ss_pred CceEEEEeCc
Q psy6053 238 LELFVHISTA 247 (614)
Q Consensus 238 ~k~~V~vST~ 247 (614)
+++|+.+..
T Consensus 163 -~Pli~~gv~ 171 (292)
T 3h8v_A 163 -QTWMESGVS 171 (292)
T ss_dssp -CCEEEEEEC
T ss_pred -CCEEEeeee
Confidence 578876653
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.12 Score=52.63 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=71.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|.|+|| |.+|..++-.|+..+. +.+|.++++.+...... ..++.+ ..+ ....+.+..+|
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~ev~L~Di~~~~~~g~--~~dl~~---------~~~--~~~~~~i~~~~--- 68 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIGE--AMDINH---------GLP--FMGQMSLYAGD--- 68 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCHH--HHHHTT---------SCC--CTTCEEEC--C---
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChHHHHHH--HHHHHH---------hHH--hcCCeEEEECC---
Confidence 468999998 9999999999998865 46799998875433221 111111 001 11233332221
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+ +.++++|+||.+|+... ......+....|+.-.+.+.+.+.+. ....++.+.|-
T Consensus 69 ---------~-~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (318)
T 1y6j_A 69 ---------Y-SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN 124 (318)
T ss_dssp ---------G-GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS
T ss_pred ---------H-HHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 1 23689999999998754 22334466788999999999999885 45666666554
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.058 Score=55.74 Aligned_cols=38 Identities=5% Similarity=0.055 Sum_probs=32.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.-.|++|+||||+|-+|..+++.+...|. +|++.+|+.
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~Vi~~~~~~ 197 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGA---IPLVTAGSQ 197 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 34588999999999999999999988875 488888863
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.056 Score=54.89 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=32.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
.++++++|+|| |-.|+.++..|.+.|. ++|++..|.+.
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~--~~v~v~nRt~~ 183 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGI--KEIKLFNRKDD 183 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSST
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCC--CEEEEEECCCc
Confidence 46899999997 8899999999999874 46999999743
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.06 Score=55.57 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=31.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-.|++|+||||+|-+|..+++.+...|. +|++.+|++
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga---~Vi~~~~~~ 205 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGL---KILGTAGTE 205 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh
Confidence 4588999999999999999998888875 488888863
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.021 Score=56.89 Aligned_cols=38 Identities=29% Similarity=0.522 Sum_probs=29.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+.++|.|.||+|.+|+.+++.+.+. +++.-|-+++|+.
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~ 43 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTG 43 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTT
T ss_pred cccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecC
Confidence 3578999999999999999999876 6654444566654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.11 Score=53.59 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=31.3
Q ss_pred cCC--cEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTG--KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~--~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
-.| ++||||||+|-+|..+++.+...|. .+|++..|+
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga--~~Vi~~~~~ 195 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGC--SRVVGICGT 195 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTC--SEEEEEESC
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCC--CeEEEEeCC
Confidence 357 8999999999999999998888875 258888885
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.056 Score=55.50 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=31.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.-.|++||||||+|-+|..+++.+...|. +|++..|+
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~---~V~~~~~~ 189 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGC---YVVGSAGS 189 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence 34589999999999999999998888875 48888886
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.1 Score=53.62 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=31.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-.+++|||+||+|-+|..+++.+...|. +|++.+|+.
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~---~Vi~~~~~~ 201 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGA---RVIATAGSE 201 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 3578999999999999999998888875 488888863
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.065 Score=55.03 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=32.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
-.|++|||+||+|-+|...++.+...|. +|++.+|+..
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga---~Vi~~~~~~~ 195 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGA---KVIAVVNRTA 195 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 4588999999999999999988888875 4888888653
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.15 Score=52.70 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=73.5
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH--------HHHHhChhhHHhhhhccccc
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI--------EELFASPLFNLLKSVHGQKI 168 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl--------~~~~~~~~f~~l~~~~p~~~ 168 (614)
++..++++|+|.|+ |-+|+.+++.|.+.| |.+|.++++..-..+-..|- .+......-+++++.+|+
T Consensus 113 q~~L~~~~VlvvG~-GglGs~va~~La~aG--vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-- 187 (353)
T 3h5n_A 113 QDKLKNAKVVILGC-GGIGNHVSVILATSG--IGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSE-- 187 (353)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT--
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHhCC--CCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCC--
Confidence 55567889999996 669999999999998 66899888764211100000 000000011233333444
Q ss_pred cCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 169 IDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 169 ~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+++.+..+++..+ +... ++++|+||.+.-.. ... -..+-++|.+. + +++|+.+..
T Consensus 188 -v~v~~~~~~i~~~~------~~~~-~~~~DlVvd~~Dn~--~~~-----------r~~ln~~c~~~-~-~p~i~~~~~ 243 (353)
T 3h5n_A 188 -ISVSEIALNINDYT------DLHK-VPEADIWVVSADHP--FNL-----------INWVNKYCVRA-N-QPYINAGYV 243 (353)
T ss_dssp -SEEEEEECCCCSGG------GGGG-SCCCSEEEECCCCS--TTH-----------HHHHHHHHHHT-T-CCEEEEEEE
T ss_pred -CeEEEeecccCchh------hhhH-hccCCEEEEecCCh--HHH-----------HHHHHHHHHHh-C-CCEEEEEEe
Confidence 57888888887654 2444 78999999975332 210 02244677774 4 577776653
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.095 Score=52.71 Aligned_cols=115 Identities=17% Similarity=0.038 Sum_probs=72.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHH-HHhChhhHHhhhhccccccCeEEEE-eCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEE-LFASPLFNLLKSVHGQKIIDKVLPI-SGDAE 180 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~-~~~~~~f~~l~~~~p~~~~~~v~~v-~gDl~ 180 (614)
|+|.|+|| |.+|..++..|+..|. +.+|.+.++.+. +++. .++ +.+..+. ......+. ..|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~-~~~v~L~D~~~~------~~~g~~~d------l~~~~~~-~~~~~~i~~t~d-- 63 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLD-VDEIALVDIAED------LAVGEAMD------LAHAAAG-IDKYPKIVGGAD-- 63 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSC-CSEEEEECSSHH------HHHHHHHH------HHHHHHT-TTCCCEEEEESC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEECChH------HHHHHHHH------HHhhhhh-cCCCCEEEEeCC--
Confidence 57999998 9999999999998875 346888888642 2220 000 0110100 11112222 123
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
.+.++++|+||-+|+..+ ......+....|+.-.+.+.+.+.+. +...++.+=|
T Consensus 64 -----------~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvs 118 (294)
T 1oju_A 64 -----------YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (294)
T ss_dssp -----------GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred -----------HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence 234679999999998753 23345577889999999999998885 5555444433
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.13 Score=53.26 Aligned_cols=118 Identities=17% Similarity=0.069 Sum_probs=71.2
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccE---EEE--EEccCCCcCHHHHHH----HHHhChhhHHhhhhccccccCe
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKK---IYI--LMRQKKGKNARQRIE----ELFASPLFNLLKSVHGQKIIDK 171 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~---V~~--LvR~~~~~~~~~Rl~----~~~~~~~f~~l~~~~p~~~~~~ 171 (614)
++.+|.||||+|.+|.+++-.|+..+- +.. |.+ +..++. +++++ ++.+.. .| ...+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l-~~e~~~l~L~d~d~~~~----~~~~~G~amDL~h~~--------~p--~~~~ 95 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEV-FGQDQPIALKLLGSERS----FQALEGVAMELEDSL--------YP--LLRE 95 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTT-TCTTCCEEEEEECCGGG----HHHHHHHHHHHHTTT--------CT--TEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCc-CCCCceeEEEecCccch----hhhhHHHHHhHHhhh--------hh--hcCC
Confidence 467899999999999999999987642 222 433 333221 22222 221110 01 1123
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 172 VLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 172 v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+.+.. + ++ ..++++|+||-+||..+ ..+...++++.|+.-.+.+.+...+..+...++.+-|
T Consensus 96 v~i~~------~------~y-~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvs 158 (375)
T 7mdh_A 96 VSIGI------D------PY-EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 158 (375)
T ss_dssp EEEES------C------HH-HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cEEec------C------CH-HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 33311 1 23 45689999999998754 3455678899999999999988887423344444433
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.36 Score=48.90 Aligned_cols=116 Identities=14% Similarity=0.037 Sum_probs=70.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe-CCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS-GDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~-gDl~~ 181 (614)
|+|.|+|| |.+|..++..|+..+. +..|.++++.+... +....++.+...+ ....+.+.. +|.
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~~k~--~g~a~DL~~~~~~----------~~~~~~v~~~~~~-- 64 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDV-AKEVVMVDIKDGMP--QGKALDMRESSPI----------HGFDTRVTGTNDY-- 64 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-SSEEEEECSSTTHH--HHHHHHHHHHHHH----------HTCCCEEEEESSS--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCchHHH--HHHHHHHhccccc----------cCCCcEEEECCCH--
Confidence 68999996 9999999999998865 45789988876321 1111122111000 111223321 221
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+.++++|+||-+|+..+ ......+.+..|+.-.+.+.+.+.+. ....++.+-|
T Consensus 65 -----------~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvt 118 (314)
T 3nep_X 65 -----------GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVA 118 (314)
T ss_dssp -----------GGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECC
T ss_pred -----------HHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecC
Confidence 24578999999998753 23344577899999999999998885 4455544433
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.036 Score=53.60 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=51.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|+|.|+ |.+|+.+++.|.+.|+ |.++.|.+. +++++ . .++.++.||.++
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~----v~vid~~~~------~~~~~----------------~-~~~~~i~gd~~~ 60 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV----FVLAEDENV------RKKVL----------------R-SGANFVHGDPTR 60 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE----EEEESCGGG------HHHHH----------------H-TTCEEEESCTTC
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe----EEEEECCHH------HHHHH----------------h-cCCeEEEcCCCC
Confidence 468999997 9999999999988753 556666532 22222 1 347889999988
Q ss_pred CCCCCCHHHHHHH-hccccEEEEccc
Q psy6053 182 DELAIKESDRQLL-ASEVDIMIHGAA 206 (614)
Q Consensus 182 ~~lGLs~~~~~~l-~~~vd~ViH~AA 206 (614)
++ .+.++ ++++|.||-+.+
T Consensus 61 ~~------~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 61 VS------DLEKANVRGARAVIVDLE 80 (234)
T ss_dssp HH------HHHHTTCTTCSEEEECCS
T ss_pred HH------HHHhcCcchhcEEEEcCC
Confidence 65 66666 678999997654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.16 Score=53.75 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=54.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+++|+|.|+ |-+|+.+++.|.+.|.+ |.++.+.. ++++++. ..++.++.||.++
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~---vvvId~d~------~~v~~~~----------------~~g~~vi~GDat~ 57 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVK---MVVLDHDP------DHIETLR----------------KFGMKVFYGDATR 57 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCC---EEEEECCH------HHHHHHH----------------HTTCCCEESCTTC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCC---EEEEECCH------HHHHHHH----------------hCCCeEEEcCCCC
Confidence 467999996 99999999999999877 77887763 4444331 1346789999998
Q ss_pred CCCCCCHHHHHHH-hccccEEEEccc
Q psy6053 182 DELAIKESDRQLL-ASEVDIMIHGAA 206 (614)
Q Consensus 182 ~~lGLs~~~~~~l-~~~vd~ViH~AA 206 (614)
++ .+..+ ++++|+||-+..
T Consensus 58 ~~------~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 58 MD------LLESAGAAKAEVLINAID 77 (413)
T ss_dssp HH------HHHHTTTTTCSEEEECCS
T ss_pred HH------HHHhcCCCccCEEEECCC
Confidence 76 56665 678999986654
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.11 Score=55.31 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=66.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCc--cEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNV--KKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v--~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|+|.| .|-+|+.++..|.++ +++ .+|.+....+.+.+..++ .++.+...++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~-~dv~~~~I~vaD~~~~~~~~~~~----------------------~g~~~~~~~V 68 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEK-FDIKPSQVTIIAAEGTKVDVAQQ----------------------YGVSFKLQQI 68 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHH-BCCCGGGEEEEESSCCSCCHHHH----------------------HTCEEEECCC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhC-CCCceeEEEEeccchhhhhHHhh----------------------cCCceeEEec
Confidence 35799999 899999999999998 444 467777766555433211 1345666676
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
+..+. ++.+..++++.|+|+|++-.. .+ ..++++|.+. + +.|++|+-
T Consensus 69 dadnv---~~~l~aLl~~~DvVIN~s~~~-~~--------------l~Im~aclea-G---v~YlDTa~ 115 (480)
T 2ph5_A 69 TPQNY---LEVIGSTLEENDFLIDVSIGI-SS--------------LALIILCNQK-G---ALYINAAT 115 (480)
T ss_dssp CTTTH---HHHTGGGCCTTCEEEECCSSS-CH--------------HHHHHHHHHH-T---CEEEESSC
T ss_pred cchhH---HHHHHHHhcCCCEEEECCccc-cC--------------HHHHHHHHHc-C---CCEEECCC
Confidence 66531 122445666669999965332 12 4588999995 3 57888884
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.063 Score=54.88 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=31.8
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.-.|++||||||+|-+|...++.+...|. +|++..|+.
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~ 184 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGC---RVVGIAGGA 184 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 34689999999999999999988888875 488888763
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.062 Score=53.80 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=31.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++++|+|| |-+|+.++..|.+.|. .+|++..|..
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~--~~v~i~~R~~ 161 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGV--QKLQVADLDT 161 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEECCH
Confidence 46899999997 8899999999999875 4688888874
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.12 Score=53.18 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=31.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-.|++|+|+||+|-+|...++.+...|.+ |++..|+.
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~---Vi~~~~~~ 202 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGAE---VYATAGST 202 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESSH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCE---EEEEeCCH
Confidence 45889999999999999999988888754 88888864
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.19 Score=51.49 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=33.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
.-.|++|+|+||+|-+|...++.+...|. +|++.+|+...
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~ 181 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNF---RLIAVTRNNKH 181 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSSTT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCHHH
Confidence 34688999999999999999988887875 48899987654
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.044 Score=56.57 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=28.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.++|.|.||||.+|+.+++.|++. +++ +|..+.+.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~-elv~v~s~ 38 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-PYL-EVKQVTSR 38 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-TTE-EEEEEBCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEECc
Confidence 468999999999999999999876 554 46666654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.39 Score=48.53 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=69.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|.|+|| |.+|..++..|+..|. + .|.++++.+.. .+....++.+...+ . . ...++... .|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~-~-~v~L~Di~~~~--~~g~~~dl~~~~~~------~-~-~~~~i~~t-~d---- 64 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKEL-G-DIVLLDIVEGV--PQGKALDLYEASPI------E-G-FDVRVTGT-NN---- 64 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-S-EEEEECSSSSH--HHHHHHHHHTTHHH------H-T-CCCCEEEE-SC----
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-C-eEEEEeCCccH--HHHHHHhHHHhHhh------c-C-CCeEEEEC-CC----
Confidence 58999998 9999999999998875 2 38888776422 11111122111000 0 0 11233321 33
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+ +.++++|+||.+|+...- .....+....|+...+.+.+.+.+. ....++.+.|-
T Consensus 65 --------~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tN 120 (309)
T 1ur5_A 65 --------Y-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNN 120 (309)
T ss_dssp --------G-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECCS
T ss_pred --------H-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcCC
Confidence 2 236789999999987542 2222345678888888999888885 46667666554
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.35 Score=49.41 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=71.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-HHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.++|.|.|| |.+|..++..|...|+ + .|.+.++.+..... ...+.+... .+ + ...++... .
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~-~-~V~L~D~~~~~~~~~~~~l~~~~~-----~~----~--~~~~i~~t-~--- 70 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALREL-A-DVVLYDVVKGMPEGKALDLSHVTS-----VV----D--TNVSVRAE-Y--- 70 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-C-EEEEECSSSSHHHHHHHHHHHHHH-----HT----T--CCCCEEEE-C---
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEECChhHHHHHHHHHHhhhh-----cc----C--CCCEEEEe-C---
Confidence 478999998 9999999999999886 1 38888886532111 011111110 00 0 11233321 1
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC-hhH-----HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR-FDE-----ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~-----~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
++++.++++|+||-+++... ... ...+....|+.-.+.+.+...+. ....++.+.|-
T Consensus 71 ---------d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tN 133 (331)
T 1pzg_A 71 ---------SYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTN 133 (331)
T ss_dssp ---------SHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCS
T ss_pred ---------CHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcC
Confidence 45656789999999997543 111 22344667888888888888775 34555555544
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.044 Score=61.12 Aligned_cols=85 Identities=15% Similarity=-0.003 Sum_probs=51.2
Q ss_pred cCCCCCCCCCceeeeeec-------ccccccchHHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHhhcCC
Q psy6053 3 VPQAAPCTVGRYVTYHLS-------YLCDFAIMFADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANKVNNM 72 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~~~~~ 72 (614)
+|..+||||||+++-..- +....+. -..+.-.-..+.....++...-+|+. +|+++++|+..+++ .+.
T Consensus 515 lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~d~Ff~lGgdSl~a~~l~~~l~~-~~~ 592 (617)
T 3rg2_A 515 LPLTAVGKVDKKQLRQWLASRASAGRASIPAS-KAALREVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRK-VHG 592 (617)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHHSSSCCCCS-HHHHHHHHGGGSCTTCCCCTTSCGGGGTCCHHHHHHHHHHHHT-TST
T ss_pred cCCCCCCCCcHHHHHHHHhccccccccccccc-HHHHHHHHHHHhccCCCCCCCCChhhcCccHHHHHHHHHHHHH-hcC
Confidence 799999999999873211 0110111 01111111111111123333333433 99999999999998 588
Q ss_pred CCccccccCCCCchhhh
Q psy6053 73 NVPYETFYKPPVLSEEY 89 (614)
Q Consensus 73 ~~~~~~~~~~~tl~~~~ 89 (614)
+++..++|++||+++-.
T Consensus 593 ~~~~~~~~~~pti~~la 609 (617)
T 3rg2_A 593 DIDFVMLAKNPTIDAWW 609 (617)
T ss_dssp TCCHHHHHHSCCHHHHH
T ss_pred CCCHHHHhcCCCHHHHH
Confidence 99999999999998644
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.016 Score=64.89 Aligned_cols=85 Identities=11% Similarity=0.025 Sum_probs=10.5
Q ss_pred cCCCCCCCCCceeeeeecccccccchHHHHHHHhhcccccc------ccCCCchhhhh---hhhHHHHHHHHHHh-hcCC
Q psy6053 3 VPQAAPCTVGRYVTYHLSYLCDFAIMFADLAIMFADLPIMF------ADFSLPLEFIR---CEVIVSELVMAANK-VNNM 72 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~s~~~~~l~~~l~~-~~~~ 72 (614)
+|..+||||||+++... |............-.-..+..++ ..+...-+|+. +|+++++|+..+++ .+|+
T Consensus 494 lP~t~~GKidR~~L~~~-~~~~~~~~~~~~~~~e~~l~~iw~~vL~~~~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~ 572 (620)
T 4dg8_A 494 LPLTAHGKLDRAALLRR-LEEPLERCASALDPDQRGCAQLWSELLGCEVGAADQDFFLCGGNSLLALQLVALCQSAGAGA 572 (620)
T ss_dssp CCCC----CCHHHHHHH-TCSCC---------------------------------------------------------
T ss_pred CCCCcccCHhHHHHhhc-cccccccccCCCCHHHHHHHHHHHHHhCCCCCCCCCChhhccCcHHHHHHHHHHHHhhCCCC
Confidence 79999999999987321 11000000000000000111122 12233333433 99999999999999 8999
Q ss_pred CCccccccCCCCchhh
Q psy6053 73 NVPYETFYKPPVLSEE 88 (614)
Q Consensus 73 ~~~~~~~~~~~tl~~~ 88 (614)
++++.++|++||+++-
T Consensus 573 ~l~~~~~f~~pti~~l 588 (620)
T 4dg8_A 573 NLGLADLQANSRLDQF 588 (620)
T ss_dssp ----------------
T ss_pred CcCHHHHhcCCCHHHH
Confidence 9999999999999763
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.071 Score=55.30 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=29.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
++.++|.|.||||.+|+.+++.|++. +++ +|.++.+.
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~~~ 50 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANH-PHF-QVTLMTAD 50 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTC-SSE-EEEEEBCS
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcC-CCc-EEEEEeCc
Confidence 34578999999999999999999876 654 46666654
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.51 Score=47.29 Aligned_cols=116 Identities=18% Similarity=0.046 Sum_probs=74.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE-eCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI-SGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v-~gDl~~ 181 (614)
|+|-|+|| |.+|+.++..|+.++ -+.++.+++..+.. ++.--.++.+ ..+. .......+ .+|..
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~-~~~el~L~Di~~~~--~~G~a~DL~h---------~~~~-~~~~~~i~~~~d~~- 65 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDL--AVGEAMDLAH---------AAAG-IDKYPKIVGGADYS- 65 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHH--HHHHHHHHHH---------HHGG-GTCCCEEEEESCGG-
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeCCCCc--chhhhhhhhc---------cccc-CCCCCeEecCCCHH-
Confidence 68999995 999999999998884 45678888875321 1111111111 0010 11122222 23322
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
.++++|+|+-.||..+ ...+..++++.|..-.+.+.+.+.+. ..+.++.+=|
T Consensus 66 ------------~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvs 118 (294)
T 2x0j_A 66 ------------LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (294)
T ss_dssp ------------GGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred ------------HhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 3578999999999764 34566788999999999999999885 5566555444
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.12 Score=51.25 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=30.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++|+|+|+ |-+|+.++..|++.|. +|++..|..
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~---~V~v~~R~~ 152 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDC---AVTITNRTV 152 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCC---EEEEEECCH
Confidence 46899999998 6799999999999984 488888863
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.21 Score=51.72 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=30.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
++|++|+|+|| |-+|...++.+...|. +|++..|+.
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~ 214 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGL---EVWMANRRE 214 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTC---EEEEEESSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCc
Confidence 45899999999 9999999998888875 488998875
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.72 Score=46.83 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=72.0
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+.++|.|+| +|.+|..++..|+..+.. .|+++++.+... +....++.+...+. . ...++.. ..|
T Consensus 4 ~~~kI~iiG-aG~vG~~~a~~l~~~~~~--~v~l~Di~~~~~--~g~a~dL~~~~~~~-------~-~~~~v~~-t~d-- 67 (321)
T 3p7m_A 4 ARKKITLVG-AGNIGGTLAHLALIKQLG--DVVLFDIAQGMP--NGKALDLLQTCPIE-------G-VDFKVRG-TND-- 67 (321)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTCC--EEEEECSSSSHH--HHHHHHHHTTHHHH-------T-CCCCEEE-ESC--
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCc--eEEEEeCChHHH--HHHHHHHHhhhhhc-------C-CCcEEEE-cCC--
Confidence 457899999 499999999999888752 688888875321 11111221111000 0 1122221 122
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+ +.++++|+||.+|+..+ ......+.+..|+.-.+.+.+.+.+. ....++.+
T Consensus 68 ----------~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~viv 120 (321)
T 3p7m_A 68 ----------Y-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVIC 120 (321)
T ss_dssp ----------G-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred ----------H-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH-CCCcEEEE
Confidence 1 24678999999998753 23345567888999999999998885 44444433
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.15 Score=51.88 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=31.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.-.|++|||+||+|-+|...++.+...|. +|++.+|++
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~ 175 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGA---KLIGTVSSP 175 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 34588999999999999999998888875 488888753
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.6 Score=47.32 Aligned_cols=118 Identities=12% Similarity=0.130 Sum_probs=72.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+.++|.|+|+ |.+|..++..|+..|. ..|.+.++.......+..-.++.+. .. ... ...++.. ..|.
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~--~~v~l~D~~~~~~~~~g~a~dl~~~-----~~--~~~-~~~~i~~-t~d~- 73 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKEL--ADVVLVDIPQLENPTKGKALDMLEA-----SP--VQG-FDANIIG-TSDY- 73 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCGGGHHHHHHHHHHHHHH-----HH--HHT-CCCCEEE-ESCG-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeccchHHHHHHhhhhHHHh-----hh--hcc-CCCEEEE-cCCH-
Confidence 3578999996 9999999999999876 3588888863110011111111111 00 000 1123332 1221
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
..++++|+||-+|+..+ ......+.+..|+.-.+.+.+.+.+. ....++.+
T Consensus 74 ------------~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlv 125 (315)
T 3tl2_A 74 ------------ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVV 125 (315)
T ss_dssp ------------GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred ------------HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 23578999999998754 23445678899999999999988885 44444433
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.87 Score=46.32 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=70.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|.|+|| |.+|..++-.|+..+. +..|.++++.. +|++.... .+.+..+ ....+.+..+|
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~-~~el~L~Di~~------~~~~g~~~-----dl~~~~~--~~~~~~i~~~~--- 70 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGI-AQEIGIVDIFK------DKTKGDAI-----DLSNALP--FTSPKKIYSAE--- 70 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH------HHHHHHHH-----HHHTTGG--GSCCCEEEECC---
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCCc------hHhHHHHH-----HHHHHHH--hcCCeEEEECC---
Confidence 468999998 9999999999988854 56788888842 33322100 0111011 11334443322
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
.+.++++|+||.+|+...- .....+....|+.-.+.+.+.+.+. ....++.+
T Consensus 71 ----------~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 123 (326)
T 2zqz_A 71 ----------YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLV 123 (326)
T ss_dssp ----------GGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred ----------HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 1236799999999986532 2334466788999999999888885 44544444
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=1.4 Score=44.63 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=74.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHH-HHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEE-LFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~-~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+.++|.|+|| |.+|..++..|+..+. +..|.++++.+ +|++. ..+ +.+..+. ....+.+..+|
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~-~~ei~L~Di~~------~~~~g~~~d------l~~~~~~-~~~~~~v~~~~- 68 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSI-VDELVIIDLDT------EKVRGDVMD------LKHATPY-SPTTVRVKAGE- 68 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCS-CSEEEEECSCH------HHHHHHHHH------HHHHGGG-SSSCCEEEECC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh------hHhhhhhhh------HHhhhhh-cCCCeEEEeCC-
Confidence 3578999998 9999999999998864 35687777652 23321 110 0000111 11233333322
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
.+.++++|+||-+|+... ......+....|+.-.+.+.+.+.+. ....++.+.|-
T Consensus 69 ------------~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (317)
T 3d0o_A 69 ------------YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATN 124 (317)
T ss_dssp ------------GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSS
T ss_pred ------------HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 123679999999998753 23334466788999899999988885 55666666553
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.26 Score=50.23 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=30.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
-.|++|||+||+|-+|...++.+...|. +|++..|+
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~ 182 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGA---HTIAVAST 182 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence 4588999999999999999988887775 48888885
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.096 Score=53.70 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=28.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+++|.|.||||.+|..|++.|.+. +++ ++..+.+.+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-p~~-el~~l~s~~ 39 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-PHM-NITALTVSA 39 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTE-EEEEEEEET
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-CCC-cEEEEEecC
Confidence 368999999999999999988875 665 466665443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.43 E-value=0.72 Score=46.79 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=68.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|.|+|| |.+|..++..|+..+. +.+|.++++.. +|++.... .+.+..+ ....+.+..+|
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~------~~~~g~~~-----dl~~~~~--~~~~~~v~~~~--- 66 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVK------DRTKGDAL-----DLEDAQA--FTAPKKIYSGE--- 66 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH------HHHHHHHH-----HHHGGGG--GSCCCEEEECC---
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCCc------hHHHHHHH-----HHHHHHH--hcCCeEEEECC---
Confidence 368999998 9999999999988854 56788888842 33321100 0111111 11334443322
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
.+.++++|+||.+|+...- .....+....|+.-.+.+.+.+.+. ....++.+
T Consensus 67 ----------~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 119 (318)
T 1ez4_A 67 ----------YSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLV 119 (318)
T ss_dssp ----------GGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred ----------HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 1236799999999986532 2333456788999999999988885 45555544
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.22 Score=51.01 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=27.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMR 137 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR 137 (614)
.++|.|.||||.+|+.+++.|++++ +++ +|.++..
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~-elv~i~s 38 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVD-ELFLLAS 38 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEE-EEEEEEC
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCE-EEEEEEC
Confidence 4789999999999999999998875 443 4666653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.17 Score=52.34 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=30.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
-.|++|||+||+|.+|...++.+...|. +|++.+|+
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga---~Vi~~~~~ 197 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKC---HVIGTCSS 197 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEECC
Confidence 4578999999999999999988887775 48888886
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.89 Score=46.22 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=70.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++.++|.|+|| |.+|..++..|+..|.. +|.++++.+... +.-..++.+...+. . ...++.. ..|
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~--~v~L~Di~~~~~--~g~~~dl~~~~~~~-------~-~~~~v~~-t~d- 69 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELG--DVVLFDIAEGTP--QGKGLDIAESSPVD-------G-FDAKFTG-AND- 69 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSSSHH--HHHHHHHHHHHHHH-------T-CCCCEEE-ESS-
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCC--eEEEEeCCchhH--HHHHHHHhchhhhc-------C-CCCEEEE-eCC-
Confidence 45679999998 99999999999988762 588888865321 11111111110000 0 1122322 233
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+ +.++++|+||-+|+..+ ......+.+..|+.-.+.+.+.+.+. ....++.+
T Consensus 70 -----------~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iiv 122 (324)
T 3gvi_A 70 -----------Y-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVIC 122 (324)
T ss_dssp -----------G-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred -----------H-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEe
Confidence 2 34679999999998653 23344567788999999999988885 44444433
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.082 Score=54.72 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=28.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
++|.|.||||.+|+.+++.|++. +++ +|.++.|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-p~~-ev~~i~~s 42 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-PMF-ELTALAAS 42 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSE-EEEEEEEC
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-CCC-EEEEEEcc
Confidence 58999999999999999988876 554 57777763
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.07 E-value=0.16 Score=52.23 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=27.2
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEE
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM 136 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv 136 (614)
..+|.|.||||++|..|++.|.+. |.+ +|..+.
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-P~~-el~~l~ 45 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-PEA-KITYLS 45 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTE-EEEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEe
Confidence 358999999999999999999876 764 566654
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.1 Score=63.55 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=54.0
Q ss_pred cCCCCCCCCCceeeeeecccc------ccc----chHHHHHHHhhccccccccCCCchhhhh---hhhHHHHHHHHHHhh
Q psy6053 3 VPQAAPCTVGRYVTYHLSYLC------DFA----IMFADLAIMFADLPIMFADFSLPLEFIR---CEVIVSELVMAANKV 69 (614)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~l~~~ 69 (614)
+|..+||||||+++-...-.. .+. ..+.++=.+.+.+ ..+...-+|+. +|+++++|+..+++.
T Consensus 941 lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~~~~~vL~~----~~i~~~~~ff~lGg~Sl~a~~l~~~l~~~ 1016 (1304)
T 2vsq_A 941 LPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGR----KQIGIHDDFFALGGHALKAMTAASRIKKE 1016 (1304)
T ss_dssp CCCCSSCSSCCSCCCCCCGGGGCCCCCCCSSHHHHHHHHHHHHHHTC----SCCCTTCCTTTTTCCHHHHHHHHHHSSST
T ss_pred cCCCCCcccCHhhcCCcchhhhcccccCCCChHHHHHHHHHHHHcCC----CccCCCCCHHHhCCChHHHHHHHHHHHHH
Confidence 799999999999983321110 000 1122332233322 22333333322 999999999999999
Q ss_pred cCCCCccccccCCCCchh
Q psy6053 70 NNMNVPYETFYKPPVLSE 87 (614)
Q Consensus 70 ~~~~~~~~~~~~~~tl~~ 87 (614)
+|++++..++|++||+++
T Consensus 1017 ~g~~l~~~~~~~~~ti~~ 1034 (1304)
T 2vsq_A 1017 LGIDLPVKLLFEAPTIAG 1034 (1304)
T ss_dssp TSCCCCSSCTTTCCSHHH
T ss_pred hCCCCCHHHHHhCCCHHH
Confidence 999999999999999975
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.25 Score=50.71 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=31.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~ 139 (614)
-.+++|+||||+|-+|..+++.+... |.+ |++..|++
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~---Vi~~~~~~ 206 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGAT---IIGVDVRE 206 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCE---EEEEESSH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCe---EEEEcCCH
Confidence 35789999999989999999988888 754 88888753
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.96 Score=45.66 Aligned_cols=113 Identities=9% Similarity=0.028 Sum_probs=71.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|.|+|| |.+|..++-.|+..+. +.+|.++++.+ +|++.... .+.+..+ ....+.+..+| .
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~------~k~~g~a~-----dl~~~~~--~~~~~~v~~~~---~ 62 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGV-AREVVLVDLDR------KLAQAHAE-----DILHATP--FAHPVWVWAGS---Y 62 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH------HHHHHHHH-----HHHTTGG--GSCCCEEEECC---G
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh------hHHHHHHH-----HHHHhHh--hcCCeEEEECC---H
Confidence 57999998 9999999999988864 56799888863 33331100 0111111 11233333332 1
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+.++++|+||.+|+... ......+....|+.-.+.+.+.+.+. .....+.+
T Consensus 63 ----------~a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 114 (310)
T 2xxj_A 63 ----------GDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLV 114 (310)
T ss_dssp ----------GGGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred ----------HHhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEE
Confidence 23679999999998654 23334466788999999999888885 44554444
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=91.65 E-value=0.21 Score=51.77 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=27.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
+++|.|.||||++|..|++.|.+.++...++..+.-
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as 37 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 37 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc
Confidence 368999999999999999988776544455666653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.26 Score=52.90 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=52.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
..|+|+|.|+ |-+|.+|++.|.+.|++ |.++.+.+ ++++++.+ .-.+..+.||-+
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~---v~vId~d~------~~~~~~~~---------------~~~~~~i~Gd~~ 56 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENND---ITIVDKDG------DRLRELQD---------------KYDLRVVNGHAS 56 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEE---EEEEESCH------HHHHHHHH---------------HSSCEEEESCTT
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCC---EEEEECCH------HHHHHHHH---------------hcCcEEEEEcCC
Confidence 3589999995 89999999999999887 77777652 34443311 124678999999
Q ss_pred CCCCCCCHHHHHHH-hccccEEE
Q psy6053 181 ADELAIKESDRQLL-ASEVDIMI 202 (614)
Q Consensus 181 ~~~lGLs~~~~~~l-~~~vd~Vi 202 (614)
+++ .++++ ++++|.++
T Consensus 57 ~~~------~L~~Agi~~ad~~i 73 (461)
T 4g65_A 57 HPD------VLHEAGAQDADMLV 73 (461)
T ss_dssp CHH------HHHHHTTTTCSEEE
T ss_pred CHH------HHHhcCCCcCCEEE
Confidence 976 56655 56899988
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.11 Score=46.04 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=28.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+++|+|.|+ |.+|..++..|.+.|.+ |++..|..
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~---v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYK---VTVAGRNI 54 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCE---EEEEESCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCE---EEEEcCCH
Confidence 789999995 99999999999887643 88888863
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.27 Score=53.90 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=59.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-------------HHHHHHHHhChhhHHhhhhcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-------------RQRIEELFASPLFNLLKSVHG 165 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-------------~~Rl~~~~~~~~f~~l~~~~p 165 (614)
-.++++|+|.|+ |-+|+.+++.|.+.| |.+|.+++...=..+- +.+.+. .-+++++-.|
T Consensus 324 kL~~~kVLIVGa-GGLGs~va~~La~aG--VG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAea-----aa~~L~~iNP 395 (598)
T 3vh1_A 324 IIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAEL-----AAASLKRIFP 395 (598)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHTTT--CCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHH-----HHHHHHHHCT
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCcccccccccccccchhhcCcHHHHH-----HHHHHHhHCC
Confidence 345789999995 569999999999997 6689888554210000 001111 0112333334
Q ss_pred ccccCeEEEEeCCCCCCCCCC--------CHHHHHHHhccccEEEEcccc
Q psy6053 166 QKIIDKVLPISGDAEADELAI--------KESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 166 ~~~~~~v~~v~gDl~~~~lGL--------s~~~~~~l~~~vd~ViH~AA~ 207 (614)
. -+++.+..++..++..+ +.+...++++++|+||.|.-.
T Consensus 396 ~---v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn 442 (598)
T 3vh1_A 396 L---MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS 442 (598)
T ss_dssp T---CEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSB
T ss_pred C---cEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCC
Confidence 3 46777776664443222 234566788899999997543
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.16 Score=55.34 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=27.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.++++++|||| |.+|+.++..|++.|.+ |++..|.
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~---V~i~~R~ 396 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAK---VVIANRT 396 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC----CEEEESS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCE---EEEEECC
Confidence 46789999999 68999999999999865 7888886
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.39 Score=45.62 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=28.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
+++|.|.| +|.+|+.+++.|.+.|++ |++..|+
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~~---V~~~~r~ 60 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGFK---VVVGSRN 60 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 57899999 899999999999999876 7778875
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.49 Score=42.56 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=46.2
Q ss_pred cccccHHHHHHHHhhCCCccEEEEEEccCCCcC----HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCCCC
Q psy6053 111 SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN----ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAI 186 (614)
Q Consensus 111 TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~----~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lGL 186 (614)
+|.++...++.|.+.|.+ |++..|+..... ..+.+++ ...+...+.+|++++.
T Consensus 25 s~~p~~a~a~~La~~Ga~---vvi~~r~~~e~~~~~~~~~~~~~-----------------~G~~~~~i~~Dv~~~~--- 81 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVD---VVINLMPDSSKDAHPDEGKLVTQ-----------------AGMDYVYIPVDWQNPK--- 81 (157)
T ss_dssp EBCCCHHHHHHHHHTTCC---EEEECSCTTSTTSCTTHHHHHHH-----------------TTCEEEECCCCTTSCC---
T ss_pred cCCCCHHHHHHHHHcCCC---EEEECCCcccccccccHHHHHHH-----------------cCCeEEEecCCCCCCC---
Confidence 467899999999999877 444456543221 1111111 2245677889999872
Q ss_pred CHHHHHHHhc------cccEEEEccccc
Q psy6053 187 KESDRQLLAS------EVDIMIHGAATI 208 (614)
Q Consensus 187 s~~~~~~l~~------~vd~ViH~AA~v 208 (614)
+++++.+++ +-|++|||||..
T Consensus 82 -~~~v~~~~~~i~~~~G~dVLVnnAgg~ 108 (157)
T 3gxh_A 82 -VEDVEAFFAAMDQHKGKDVLVHCLANY 108 (157)
T ss_dssp -HHHHHHHHHHHHHTTTSCEEEECSBSH
T ss_pred -HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 235555442 229999999864
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.38 Score=49.28 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=30.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
+++|+|+||+|-+|...++.+...|. +|++..|+..
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga---~Vi~~~~~~~ 200 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGF---RPIVTVRRDE 200 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESCGG
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 37999999999999999988888875 4888887653
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.32 Score=50.06 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=68.6
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-------------HHHHHHHHHhChhhHHhhhhcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-------------ARQRIEELFASPLFNLLKSVHG 165 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-------------~~~Rl~~~~~~~~f~~l~~~~p 165 (614)
..++.+|+|.|+ |-+|+.+++.|.+.| |.+|.+++...-..+ ...|.+. .-+++++..|
T Consensus 33 ~L~~~~VlivG~-GGlG~~ia~~La~~G--vg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~-----~~~~l~~lnp 104 (346)
T 1y8q_A 33 RLRASRVLLVGL-KGLGAEIAKNLILAG--VKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEA-----SLERAQNLNP 104 (346)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHH-----HHHHHHHTCT
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEECCCcchhhCCCCCccccccCcCCHHHH-----HHHHHHhHCC
Confidence 345689999996 569999999999998 668888753210000 0011111 1123333344
Q ss_pred ccccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 166 QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 166 ~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
. -++..+..++++ . ...+++++|+||.+... + ..-..+-++|.+. + +++|+.+
T Consensus 105 ~---v~v~~~~~~~~~-~-------~~~~~~~~dvVv~~~d~--~------------~~r~~ln~~~~~~-~-ip~i~~~ 157 (346)
T 1y8q_A 105 M---VDVKVDTEDIEK-K-------PESFFTQFDAVCLTCCS--R------------DVIVKVDQICHKN-S-IKFFTGD 157 (346)
T ss_dssp T---SEEEEECSCGGG-C-------CHHHHTTCSEEEEESCC--H------------HHHHHHHHHHHHT-T-CEEEEEE
T ss_pred C---eEEEEEecccCc-c-------hHHHhcCCCEEEEcCCC--H------------HHHHHHHHHHHHc-C-CCEEEEe
Confidence 4 467777777764 1 24567899999976432 1 1113456678874 3 6788776
Q ss_pred Cc
Q psy6053 246 TA 247 (614)
Q Consensus 246 T~ 247 (614)
+.
T Consensus 158 ~~ 159 (346)
T 1y8q_A 158 VF 159 (346)
T ss_dssp EE
T ss_pred ec
Confidence 65
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.14 Score=50.99 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=31.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
.++++|+|+|+ |-+|+.++..|.+.|.. +|++..|...
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~--~v~v~~R~~~ 152 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRP--TLTVANRTMS 152 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCS--CCEEECSCGG
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCC--EEEEEeCCHH
Confidence 46889999996 88999999999999862 4888888753
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=91.04 E-value=0.83 Score=46.58 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=73.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
...++|.|+|| |.+|..++..|+..|. +..|.++++.... ++....++.+..-| + ...++ ...+|
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~~~--~~g~a~DL~~~~~~-------~--~~~~i-~~~~d- 81 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDL-ADELALVDVIEDK--LKGEMMDLQHGSLF-------L--KTPKI-VSSKD- 81 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSCHHH--HHHHHHHHHHTGGG-------C--SCCEE-EECSS-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEeCChHH--HHHHHHhhhhhhhc-------c--CCCeE-EEcCC-
Confidence 45689999997 9999999999998864 3568888875211 11111122111100 0 01112 12233
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
++ .++++|+||-+||..+ ..+...++++.|+.-.+.+.+.+.+. ....++.+-|
T Consensus 82 -----------~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvt 136 (331)
T 4aj2_A 82 -----------YS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVS 136 (331)
T ss_dssp -----------GG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred -----------HH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 22 3679999999998754 23344567899999999999888885 4454444433
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=91.00 E-value=1.5 Score=44.05 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=67.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|.|.|| |.+|..+...|+..|. +..|.+.++.... .....++.. + ..+++.. .+|.
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~-~~ev~L~Di~~~~---~g~a~dl~~------~-------~~~~i~~-t~d~-- 72 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGI-ADRLVLLDLSEGT---KGATMDLEI------F-------NLPNVEI-SKDL-- 72 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECCC--------CHHHHHH------H-------TCTTEEE-ESCG--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCcch---HHHHHHHhh------h-------cCCCeEE-eCCH--
Confidence 478999996 9999999999999986 4568888886531 111112111 0 1124544 2443
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
+.++++|+||-+|+.-.......+....|+.-.+.+.+.+.+. ....++
T Consensus 73 -----------~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~-~p~a~i 121 (303)
T 2i6t_A 73 -----------SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHY-SQHSVL 121 (303)
T ss_dssp -----------GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHH-TTTCEE
T ss_pred -----------HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEE
Confidence 2357999999999764322233456677888888888888875 344444
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=90.96 E-value=0.27 Score=51.04 Aligned_cols=39 Identities=15% Similarity=0.370 Sum_probs=29.2
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKG 141 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~ 141 (614)
++|.|-||||.+|+.|++.|+.+ ...+..|+.+.....+
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G 41 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG 41 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCC
Confidence 58999999999999999966655 2245678777665333
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.84 E-value=0.37 Score=49.21 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=28.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
-.|++|||+|| |-+|...++.+...|. +|++..|+
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga---~Vi~~~~~ 197 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAMGL---NVVAVDIG 197 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTTC---EEEEECSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEeCC
Confidence 35789999999 6699999988877774 48888876
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=90.84 E-value=0.62 Score=46.74 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=31.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++|+|+|+ |-+|+.++..|++.|. .+|++..|..
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~--~~V~v~nR~~ 175 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAA--ERIDMANRTV 175 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTC--SEEEEECSSH
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCC--CEEEEEeCCH
Confidence 46899999997 7799999999999875 3688888863
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.82 E-value=0.32 Score=50.32 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=50.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++|+|+|+ |-+|...+..+...|. +|++..|+. +|++.+.+. ....+..+.
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga---~V~v~dr~~------~r~~~~~~~-------------~~~~~~~~~--- 218 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGA---QVQIFDINV------ERLSYLETL-------------FGSRVELLY--- 218 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHHH-------------HGGGSEEEE---
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCH------HHHHHHHHh-------------hCceeEeee---
Confidence 35689999998 9999999999999885 488888863 333322110 001122221
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATI 208 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v 208 (614)
. +.+++.+.+.++|+||++++..
T Consensus 219 ~------~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 219 S------NSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp C------CHHHHHHHHHTCSEEEECCCCT
T ss_pred C------CHHHHHHHHcCCCEEEECCCcC
Confidence 1 1235666677999999998753
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=90.78 E-value=0.35 Score=49.59 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=26.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEE
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM 136 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv 136 (614)
|++|.|.||||++|..|++.|.++.+...++..+.
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~ 35 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA 35 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE
Confidence 46899999999999999997766533444566665
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.42 Score=48.80 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=59.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHH-------------HHHHHHHhChhhHHhhhhcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNAR-------------QRIEELFASPLFNLLKSVHG 165 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~-------------~Rl~~~~~~~~f~~l~~~~p 165 (614)
..++++|+|.|+ |-+|+.+++.|.+.| |.+|.++++..-..+-. .|.+. .-+++++-+|
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aG--Vg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~a-----aa~~L~~inP 102 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAEL-----AAASLKRIFP 102 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHH-----HHHHHHHHCT
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcC--CCEEEEecCCEeccccccccccCChhhcChHHHHH-----HHHHHHHhCC
Confidence 355789999995 669999999999997 66898887754111000 01111 1123333344
Q ss_pred ccccCeEEEEeCCCCCCCCC--------CCHHHHHHHhccccEEEEcccc
Q psy6053 166 QKIIDKVLPISGDAEADELA--------IKESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 166 ~~~~~~v~~v~gDl~~~~lG--------Ls~~~~~~l~~~vd~ViH~AA~ 207 (614)
. -+++.+..++..+..- ++.+....+++++|+||.+.-.
T Consensus 103 ~---v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn 149 (340)
T 3rui_A 103 L---MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS 149 (340)
T ss_dssp T---CEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSS
T ss_pred C---CEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCC
Confidence 4 4566666665433221 1233456778899999998654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.37 E-value=0.17 Score=50.80 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=31.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
-.|++|+|+||+|-+|...++.+...|. +|++..|+..
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga---~Vi~~~~~~~ 161 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPE 161 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 3578999999999999999988877774 4889988643
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.31 E-value=0.11 Score=44.02 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=35.7
Q ss_pred CCCchhhhh---hhhHHHHHHHHHHhhcC-CCCccccccCCCCchhh
Q psy6053 46 FSLPLEFIR---CEVIVSELVMAANKVNN-MNVPYETFYKPPVLSEE 88 (614)
Q Consensus 46 ~~~~~~~~~---~s~~~~~l~~~l~~~~~-~~~~~~~~~~~~tl~~~ 88 (614)
+...-+|+. +|+.+++|+..|++.++ +++++.++|++||+++-
T Consensus 44 i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~l 90 (110)
T 2cq8_A 44 VEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDF 90 (110)
T ss_dssp CCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHH
T ss_pred CCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHH
Confidence 444444433 99999999999999999 99999999999999753
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.49 Score=49.06 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=29.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
.-.|++|||+||+|-+|...++.+...|. +|++..+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga---~Vi~~~~ 216 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA---HVTAVCS 216 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeC
Confidence 34578999999999999999887777764 4777764
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=89.72 E-value=0.5 Score=51.89 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=60.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH--------HHHHhChhhHHhhhhccccccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI--------EELFASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl--------~~~~~~~~f~~l~~~~p~~~~~ 170 (614)
-.++.+|+|.|+ |-+|+.+++.|.+.| |.+|.++++..-..+-..|- ..-.....-+++++-.|. -
T Consensus 323 kL~~arVLIVGa-GGLGs~vA~~La~aG--VG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~---V 396 (615)
T 4gsl_A 323 IIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL---M 396 (615)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTT---C
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCC---c
Confidence 356789999996 669999999999997 66898888764211100000 000000011233333444 4
Q ss_pred eEEEEeCCCCCCCCC--------CCHHHHHHHhccccEEEEcccc
Q psy6053 171 KVLPISGDAEADELA--------IKESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 171 ~v~~v~gDl~~~~lG--------Ls~~~~~~l~~~vd~ViH~AA~ 207 (614)
+++.+..++..+..- ++.+....+++++|+||.|.-.
T Consensus 397 ~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn 441 (615)
T 4gsl_A 397 DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS 441 (615)
T ss_dssp EEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSS
T ss_pred EEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCC
Confidence 566777666433211 2234566778899999998654
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.55 Score=46.59 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=29.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
.+|++++|.|++|.+|+.++..|++.|.. |+...|
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAt---Vtv~h~ 192 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGAT---VSVCHI 192 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCE---EEEECT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEeC
Confidence 57999999999999999999999998755 555443
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.72 Score=47.85 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=26.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCC-ccEEEEEEc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPN-VKKIYILMR 137 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~-v~~V~~LvR 137 (614)
+++|-|.||||++|..|++.||...+- ..++..+.-
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss 40 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFST 40 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEec
Confidence 468999999999999999966666441 235655543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.4 Score=48.47 Aligned_cols=37 Identities=11% Similarity=0.261 Sum_probs=29.9
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.-.|.+|+|+||+|-+|...+.-+...|. +|++.+++
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga---~vi~~~~~ 186 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGT---TVITTASK 186 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEECH
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCC---EEEEEecc
Confidence 34688999999999999999988877775 47777654
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=89.45 E-value=0.39 Score=53.28 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=72.9
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----HHH---HhChhhHHhhhhcccccc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----EEL---FASPLFNLLKSVHGQKII 169 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~~~---~~~~~f~~l~~~~p~~~~ 169 (614)
+..++.+|+|.|+ |-+|..+++.|.+.| |.+|.+++...=..+-..|- .++ .....-+++++-.|.
T Consensus 13 ~kL~~s~VlVVGa-GGLGsevak~La~aG--VG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~--- 86 (640)
T 1y8q_B 13 EAVAGGRVLVVGA-GGIGCELLKNLVLTG--FSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPK--- 86 (640)
T ss_dssp HHHHHCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTT---
T ss_pred HHHhcCeEEEECc-CHHHHHHHHHHHHcC--CCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCC---
Confidence 3345689999996 669999999999998 56888887654211111110 000 000111234444454
Q ss_pred CeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 170 DKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 170 ~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
-+|+.+..+++..++ -..+++++|+||.+... + ..-..+-+.|.+. + +++|+.++.
T Consensus 87 v~V~a~~~~i~~~~~------~~~~~~~~DlVvda~Dn--~------------~aR~~ln~~c~~~-~-iPlI~~g~~ 142 (640)
T 1y8q_B 87 ANIVAYHDSIMNPDY------NVEFFRQFILVMNALDN--R------------AARNHVNRMCLAA-D-VPLIESGTA 142 (640)
T ss_dssp CEEEEEESCTTSTTS------CHHHHTTCSEEEECCSC--H------------HHHHHHHHHHHHH-T-CCEEEEEEE
T ss_pred CeEEEEecccchhhh------hHhhhcCCCEEEECCCC--H------------HHHHHHHHHHHHc-C-CCEEEEEEe
Confidence 578888888876542 23567899999987432 1 1123455667764 3 567777665
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=89.44 E-value=1.9 Score=43.74 Aligned_cols=118 Identities=12% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
..++|.|+|| |.+|..++..|+..|. +..|.++++.... ++....++.+...| + ...++.. .+|..
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~-~~ev~L~Di~~~~--~~g~a~DL~~~~~~-------~--~~~~i~~-t~d~~ 85 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDL-ADEVALVDVMEDK--LKGEMMDLEHGSLF-------L--HTAKIVS-GKDYS 85 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCC-CSEEEEECSCHHH--HHHHHHHHHHHGGG-------S--CCSEEEE-ESSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEECCHHH--HHHHHHHhhhhhhc-------c--cCCeEEE-cCCHH
Confidence 3578999998 9999999999999875 3468888874321 11111112111000 1 1123322 34543
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+ ++++|+||-+||..+- .+...+++..|+.-.+.+.+.+.+. ....++.+-|
T Consensus 86 ~-------------~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt 138 (330)
T 3ldh_A 86 V-------------SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP 138 (330)
T ss_dssp S-------------CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred H-------------hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC
Confidence 2 4789999999987542 2333456788888888998888885 4455444433
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.43 Score=48.80 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=28.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL 135 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~L 135 (614)
-.|++|||+||+|-+|...++.+...|.+ |++.
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~---Vi~~ 181 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGAR---VFAT 181 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCE---EEEE
Confidence 35889999999999999999888888754 7777
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=89.17 E-value=1.2 Score=44.79 Aligned_cols=113 Identities=10% Similarity=0.113 Sum_probs=63.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|.|| |.+|..++..|+..|+ +..|.+.++.+ +|++.... .+.+..+ ....+.+..+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~-~~eV~L~D~~~------~~~~~~~~-----~l~~~~~--~~~~~~i~~~~---- 61 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGS-CSELVLVDRDE------DRAQAEAE-----DIAHAAP--VSHGTRVWHGG---- 61 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH------HHHHHHHH-----HHTTSCC--TTSCCEEEEEC----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCH------HHHHHHHH-----hhhhhhh--hcCCeEEEECC----
Confidence 57999998 9999999999999876 34588888863 23321100 0110001 11122222222
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+ +.++++|+||-+++... ......+....|+.-.+.+.+...+. .....+.+
T Consensus 62 --------~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~ 114 (304)
T 2v6b_A 62 --------H-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLV 114 (304)
T ss_dssp --------G-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE
T ss_pred --------H-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 1 23578999999997543 22333456678888888888888875 44444444
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=88.76 E-value=1.1 Score=45.46 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=67.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|.|+|| |.+|..++..|+..+. +.+|++.++... +++.. ...+-+ ..+. ....+.+..+|
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~-~~ev~l~Di~~~------~~~~~-~~dl~~----~~~~-~~~~~~i~~~~--- 68 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANES------KAIGD-AMDFNH----GKVF-APKPVDIWHGD--- 68 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHH------HHHHH-HHHHHH----HTTS-SSSCCEEEECC---
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEeCCcc------hHHHH-HhhHHH----Hhhh-cCCCeEEEcCc---
Confidence 468999998 9999999999988864 457988888632 22211 000111 1111 11133333322
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
. +.++++|+||-+++...- .....+....|..-.+.+.+.+.+. .....+.+
T Consensus 69 ---------~-~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv 121 (316)
T 1ldn_A 69 ---------Y-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLV 121 (316)
T ss_dssp ---------G-GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred ---------H-HHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEE
Confidence 1 235789999999876432 1112234567777778888887775 34444444
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=88.65 E-value=0.47 Score=48.84 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.4
Q ss_pred cCC-cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTG-KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~-~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
-.| .+|||+||+|-+|...+.-+...|.+ |++.+++..
T Consensus 165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~---vi~~~~~~~ 203 (364)
T 1gu7_A 165 TPGKDWFIQNGGTSAVGKYASQIGKLLNFN---SISVIRDRP 203 (364)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHHTCE---EEEEECCCT
T ss_pred CCCCcEEEECCCCcHHHHHHHHHHHHCCCE---EEEEecCcc
Confidence 357 89999999999999988877777754 778887654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=88.60 E-value=0.23 Score=50.88 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.|++|+|+||+|-+|...++.+...|. +|++.+++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga---~Vi~~~~~ 184 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL---RVITTASR 184 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEECCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeCC
Confidence 588999999999999999988877774 48888875
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=88.52 E-value=0.13 Score=40.80 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHhhcCCCCccccccCCCCchhhh
Q psy6053 55 CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEEY 89 (614)
Q Consensus 55 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~~ 89 (614)
+|+.+.+|...+++.+|+.+|...+++.+|+.+-.
T Consensus 39 DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~ 73 (83)
T 1or5_A 39 DSLALLETAAVLQQRYGIALTDETVGRLGTPRELL 73 (83)
T ss_dssp CHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHH
T ss_pred CHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHH
Confidence 88899999999999999999999998999987643
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=88.48 E-value=0.64 Score=47.57 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.|++|||+|| |-+|...++.+...|.. +|++.+|+
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~--~Vi~~~~~ 201 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAY--PVIVSEPS 201 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCC--SEEEECSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC--EEEEECCC
Confidence 6889999999 99999999888878761 48888886
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=88.25 E-value=0.19 Score=50.28 Aligned_cols=37 Identities=30% Similarity=0.509 Sum_probs=29.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
..+|.|.||+|-+|+.+++.+.+. +++.-|-+++|+.
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~-~~~eLvg~vd~~~ 57 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR-KDVELCAVLVRKG 57 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC-SSEEEEEEBCCTT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 468999999999999999998876 6754455556653
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=87.99 E-value=0.63 Score=48.19 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=25.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCC-ccEEEEEE
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPN-VKKIYILM 136 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~-v~~V~~Lv 136 (614)
++|-|.||||++|..|++.||...+- ..++..+.
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s 35 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS 35 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEe
Confidence 47999999999999999966665441 23565554
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=87.75 E-value=0.16 Score=41.44 Aligned_cols=34 Identities=0% Similarity=0.068 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHhhcCCCCccccccCCCCchhh
Q psy6053 55 CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEE 88 (614)
Q Consensus 55 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~ 88 (614)
+|+.+++|+..+++.+|+.++..++|++||++.-
T Consensus 46 dSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~l 79 (93)
T 4i4d_A 46 NSIHAIXITNRVEELVDAELSIRVLLETRTVAGM 79 (93)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999753
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=87.59 E-value=0.97 Score=45.16 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=30.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
.+|++++|.|++|.+|+.++..|++.|.. |+...|
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt---Vtv~~~ 197 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKENAT---VTIVHS 197 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCE---EEEECT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe---EEEEeC
Confidence 57999999999999999999999999765 666555
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=87.48 E-value=0.95 Score=44.89 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
.+|++++|.|++|.+|+.++..|++.|.. |+...|
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt---Vtv~hs 193 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKAT---VTTCHR 193 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCE---EEEECT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCe---EEEEeC
Confidence 57999999999999999999999998755 555443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=87.42 E-value=2.9 Score=42.01 Aligned_cols=113 Identities=15% Similarity=0.023 Sum_probs=66.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|.|| |.+|..++..|.+.+. ..+|.+.+|.+.. .+.+..-+...... . . ...++... .|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~-g~~V~l~D~~~~~---~~~~~~~l~~~~~~-----~-~-~~~~i~~t-~d---- 63 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGI---PQGKALDMYESGPV-----G-L-FDTKVTGS-ND---- 63 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSH---HHHHHHHHHTTHHH-----H-T-CCCEEEEE-SC----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChhH---HHHHHHhHHhhhhc-----c-c-CCcEEEEC-CC----
Confidence 57999998 9999999999888632 2358899887532 12221111111000 0 0 11223221 22
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
++. ++++|+||-+++.... .....++...|+.-.+.+.+.+.+. .....+
T Consensus 64 --------~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~v 114 (310)
T 1guz_A 64 --------YAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPII 114 (310)
T ss_dssp --------GGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEE
T ss_pred --------HHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEE
Confidence 223 5789999999976432 2224467788888888888888775 334433
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=87.35 E-value=0.94 Score=46.56 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=30.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
-.|.+|||+|| |-+|...+.-+...|. +|++..|++..
T Consensus 178 ~~g~~VlV~Ga-G~vG~~~~qlak~~Ga---~Vi~~~~~~~~ 215 (360)
T 1piw_A 178 GPGKKVGIVGL-GGIGSMGTLISKAMGA---ETYVISRSSRK 215 (360)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSSTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEcCCHHH
Confidence 35789999999 9999999887777775 38999987654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=87.07 E-value=3.6 Score=41.15 Aligned_cols=114 Identities=8% Similarity=0.092 Sum_probs=65.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|.| +|.+|..++..|++.|. ..+|++.+|.. ++++.+... +.+..+. ....+.+...|.
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~-~~~V~l~d~~~------~~~~~~~~~-----l~~~~~~-~~~~~~~~~~d~--- 64 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGV-ADDYVFIDANE------AKVKADQID-----FQDAMAN-LEAHGNIVINDW--- 64 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-CSEEEEECSSH------HHHHHHHHH-----HHHHGGG-SSSCCEEEESCG---
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-CCEEEEEcCCH------HHHHHHHHH-----HHhhhhh-cCCCeEEEeCCH---
Confidence 6899999 79999999999999983 24588888863 223222110 0000000 111233323332
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-----hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-----FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-----~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+.++++|+||-++.... ......+....|+.-.+.+++...+. .....+.+
T Consensus 65 ----------~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~ 120 (309)
T 1hyh_A 65 ----------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVV 120 (309)
T ss_dssp ----------GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred ----------HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEE
Confidence 23578999999887643 12222234567777778888877764 33444433
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=86.99 E-value=0.98 Score=44.78 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=28.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM 136 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv 136 (614)
.+|++++|.|++|.+|+.++..|++.|.. |+...
T Consensus 159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAt---Vtv~h 192 (286)
T 4a5o_A 159 LYGMDAVVVGASNIVGRPMALELLLGGCT---VTVTH 192 (286)
T ss_dssp CTTCEEEEECTTSTTHHHHHHHHHHTTCE---EEEEC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCe---EEEEe
Confidence 47999999999999999999999998755 55543
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=86.98 E-value=0.23 Score=40.39 Aligned_cols=34 Identities=6% Similarity=0.266 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHhhcCCCCccccccCCCCchhh
Q psy6053 55 CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEE 88 (614)
Q Consensus 55 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~ 88 (614)
+|+.+++|+..+++.+|++++..++|++||+++-
T Consensus 44 dSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~l 77 (91)
T 1dny_A 44 HSLKAMAVAAQVHREYQVELPLKVLFAQPTIKAL 77 (91)
T ss_dssp SSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999763
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=86.96 E-value=1.2 Score=35.26 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=35.1
Q ss_pred CCchhhhh-hhhHHHHHHHHHHhhcCCCCccccccCCCCchhh
Q psy6053 47 SLPLEFIR-CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEE 88 (614)
Q Consensus 47 ~~~~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~ 88 (614)
..++.... +|+.++++...+++.+|++++...++++||+..-
T Consensus 37 ~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~l 79 (88)
T 2afd_A 37 EESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQL 79 (88)
T ss_dssp TSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHH
T ss_pred CCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHH
Confidence 33443333 9999999999999999999999999999999753
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.91 E-value=2 Score=43.46 Aligned_cols=112 Identities=17% Similarity=0.077 Sum_probs=66.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|.|| |.+|..++..|++.|+ ...|.+.+|.+ ++++.... .+.+..+ ......+...| .
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~-~~~V~l~D~~~------~~~~~~~~-----~l~~~~~--~~~~~~i~~~d---~ 62 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDK------KRAEGDAL-----DLIHGTP--FTRRANIYAGD---Y 62 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH------HHHHHHHH-----HHHHHGG--GSCCCEEEECC---G
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCCh------HHHHHHHH-----HHHhhhh--hcCCcEEEeCC---H
Confidence 57999998 9999999999999987 34588888863 22222110 0000000 00111222222 1
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChh-HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFD-EALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
+.++++|+||-+++..... ....+....|+.-.+.+++...+. .....+.
T Consensus 63 ----------~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii 113 (319)
T 1a5z_A 63 ----------ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVI 113 (319)
T ss_dssp ----------GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEE
T ss_pred ----------HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEE
Confidence 1357899999998864421 123356677888888888888774 3344433
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.83 E-value=1.1 Score=45.18 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=30.3
Q ss_pred Cc-EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 102 GK-TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 102 ~~-~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
+. +|||+||+|-+|...+..+...|.+ |++.+++...
T Consensus 149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~---vi~~~~~~~~ 186 (328)
T 1xa0_A 149 ERGPVLVTGATGGVGSLAVSMLAKRGYT---VEASTGKAAE 186 (328)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCC---EEEEESCTTC
T ss_pred CCceEEEecCCCHHHHHHHHHHHHCCCE---EEEEECCHHH
Confidence 44 7999999999999999888777754 8888887543
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=86.79 E-value=0.96 Score=43.99 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=24.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
++|.|.|++|-+|+.+++.+.+. ++. ++.+.+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~-elva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-DDL-TLSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-TTC-EEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCC-EEEEEEc
Confidence 47999999999999999998765 332 3554444
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=86.76 E-value=0.32 Score=49.59 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=50.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|+|.|+ |-+|+.+++.|.+.|+ |.++.+++ ++++ + ...++.++.||.++
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~----v~vid~~~------~~~~-~----------------~~~~~~~i~gd~~~ 166 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV----FVLAEDEN------VRKK-V----------------LRSGANFVHGDPTR 166 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE----EEEESCGG------GHHH-H----------------HHTTCEEEESCTTS
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc----EEEEeCCh------hhhh-H----------------HhCCcEEEEeCCCC
Confidence 468999996 9999999999988753 55555543 2222 2 11357899999998
Q ss_pred CCCCCCHHHHHHH-hccccEEEEccc
Q psy6053 182 DELAIKESDRQLL-ASEVDIMIHGAA 206 (614)
Q Consensus 182 ~~lGLs~~~~~~l-~~~vd~ViH~AA 206 (614)
++ .++++ ++++|.|+-+.+
T Consensus 167 ~~------~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 167 VS------DLEKANVRGARAVIVDLE 186 (336)
T ss_dssp HH------HHHHTCSTTEEEEEECCS
T ss_pred HH------HHHhcChhhccEEEEcCC
Confidence 66 67766 678999986643
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=86.65 E-value=0.95 Score=44.63 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=29.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
.+|++++|.|++|-+|+.++..|++.|.. |+...|
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAt---Vtv~~~ 182 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYT---VSVCHS 182 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCE---EEEECT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCe---EEEEeC
Confidence 68999999999999999999999999765 555443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=86.55 E-value=0.49 Score=49.25 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=49.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+++|+|+|+ |-+|..+++.+...|. +|++..|.. +|++.+.+ . ....+.. +.
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga---~V~~~d~~~------~~l~~~~~---------~----~g~~~~~---~~ 219 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGA---TVTVLDINI------DKLRQLDA---------E----FCGRIHT---RY 219 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH------HHHHHHHH---------H----TTTSSEE---EE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCH------HHHHHHHH---------h----cCCeeEe---cc
Confidence 56899999998 9999999999998875 488888863 23322210 0 0011111 11
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~ 207 (614)
.+ .+++.+++.++|+||.+++.
T Consensus 220 ~~------~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 220 SS------AYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CC------HHHHHHHHHHCSEEEECCCC
T ss_pred CC------HHHHHHHHcCCCEEEECCCc
Confidence 11 23577778899999998764
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=86.40 E-value=2.6 Score=42.00 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
+.++|.|.|+||-+|+.+++.+++.|++ .|+.+.+
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~--~v~~VnP 40 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTK--IVAGVTP 40 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE--EEEEECT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCe--EEEEECC
Confidence 3578999999999999999999998765 2444444
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=86.04 E-value=0.83 Score=48.49 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=30.7
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
..-.|++|+|+||+|-+|...+..+...|.+ |++.+++
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~---vi~~~~~ 254 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGI---PVAVVSS 254 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCE---EEEEeCC
Confidence 3446899999999999999998888777754 7777764
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=85.95 E-value=1.4 Score=34.97 Aligned_cols=44 Identities=2% Similarity=-0.152 Sum_probs=35.7
Q ss_pred cCCCchhhhh-hhhHHHHHHHHHHhhcCCCCcc--ccccCCCCchhh
Q psy6053 45 DFSLPLEFIR-CEVIVSELVMAANKVNNMNVPY--ETFYKPPVLSEE 88 (614)
Q Consensus 45 ~~~~~~~~~~-~s~~~~~l~~~l~~~~~~~~~~--~~~~~~~tl~~~ 88 (614)
+...++.... +|+.++++...+++.+|++++. ..++++||+.+-
T Consensus 32 ~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~l 78 (89)
T 2kr5_A 32 TDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRAL 78 (89)
T ss_dssp CTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHH
T ss_pred CCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHH
Confidence 3344443333 9999999999999999999999 999999999763
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=85.77 E-value=0.72 Score=47.60 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=48.4
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.|++|||+|+ |-+|...++.+...|. +|++..|+... ++...+ +. ..+ .++ |..
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~~~------~~~~~~---------~l---Ga~--~v~--~~~ 240 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGS---KVTVISTSPSK------KEEALK---------NF---GAD--SFL--VSR 240 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGGG------HHHHHH---------TS---CCS--EEE--ETT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHHH------HHHHHH---------hc---CCc--eEE--ecc
Confidence 5789999996 9999999988877774 48888876432 211110 00 111 122 333
Q ss_pred CCCCCCCHHHHHHHhccccEEEEccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATI 208 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v 208 (614)
+ .+.+.++..++|+||++++..
T Consensus 241 ~------~~~~~~~~~~~D~vid~~g~~ 262 (366)
T 1yqd_A 241 D------QEQMQAAAGTLDGIIDTVSAV 262 (366)
T ss_dssp C------HHHHHHTTTCEEEEEECCSSC
T ss_pred C------HHHHHHhhCCCCEEEECCCcH
Confidence 3 235666667899999998854
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=85.70 E-value=0.94 Score=36.59 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=35.5
Q ss_pred cCCCchhhhh-hhhHHHHHHHHHHhhcCCCCccccccCCCCchh
Q psy6053 45 DFSLPLEFIR-CEVIVSELVMAANKVNNMNVPYETFYKPPVLSE 87 (614)
Q Consensus 45 ~~~~~~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~ 87 (614)
+...++.... +|+.+++|...+++.+|+++|...++++||+.+
T Consensus 42 ~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~ 85 (95)
T 2ju1_A 42 RATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASA 85 (95)
T ss_dssp CSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHH
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHH
Confidence 3344443333 999999999999999999999999999999875
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=85.13 E-value=0.26 Score=40.08 Aligned_cols=48 Identities=10% Similarity=-0.014 Sum_probs=37.7
Q ss_pred cccchHHHHHHHhhcccccc------ccCCCchhhhhhhhHHHHHHHHHHhhcC
Q psy6053 24 DFAIMFADLAIMFADLPIMF------ADFSLPLEFIRCEVIVSELVMAANKVNN 71 (614)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~l~~~~~ 71 (614)
+.+.+|+++|+||+...++. .++.+|...+++..|+..|+..+.+..|
T Consensus 42 ~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~lg 95 (95)
T 2ju1_A 42 RATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAELG 95 (95)
T ss_dssp CSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHHcC
Confidence 45668999999999777665 3556777778888999999998877643
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=84.84 E-value=1.7 Score=44.43 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=27.6
Q ss_pred CcEEEEecccccccHHH-HHHH-HhhCCCccEEEEEEccCC
Q psy6053 102 GKTLFMTGASGFLGKVL-LEKI-LRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~L-l~~L-l~~g~~v~~V~~LvR~~~ 140 (614)
+.+|||+|| |-+|... +.-+ ...|. ++|++.++++.
T Consensus 173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga--~~Vi~~~~~~~ 210 (357)
T 2b5w_A 173 PSSAFVLGN-GSLGLLTLAMLKVDDKGY--ENLYCLGRRDR 210 (357)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHCTTCC--CEEEEEECCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHcCC--cEEEEEeCCcc
Confidence 389999999 9999988 7655 45553 35899988754
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=3.3 Score=41.19 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=28.0
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+..+|.|.|+||.+|+.+++.+++.|.+ +++.+.++
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~---~V~~V~p~ 41 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGTK---MVGGVTPG 41 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE---EEEEECTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 3578999999999999999999988654 44444443
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=84.69 E-value=1.8 Score=46.04 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=30.0
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.-.|.+|+|+||+|-+|...+..+...|.+ |++++++
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~---vi~~~~~ 262 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAGGAN---PICVVSS 262 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCe---EEEEECC
Confidence 345889999999999999998888777754 7777764
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=84.58 E-value=3.7 Score=41.34 Aligned_cols=35 Identities=11% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+.|+|.|.| +|.+|..++..|++.|++ |++..|..
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~---V~~~dr~~ 64 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAGYA---LQVWNRTP 64 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCCe---EEEEcCCH
Confidence 457899997 699999999999999876 77887763
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=84.45 E-value=0.86 Score=44.28 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=26.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++|.|.|+ |.+|+.+++.+.+.+.+ -|-++.|..
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~e--Lva~~d~~~ 37 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHE--IVGVIENTP 37 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCE--EEEEECSSC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCE--EEEEEecCc
Confidence 478999999 99999999999887432 233455654
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.42 E-value=2 Score=41.91 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++ +|+|.|+ |-+|+.++..|++.|. .+|++..|..
T Consensus 107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~--~~I~v~nR~~ 142 (253)
T 3u62_A 107 VKE-PVVVVGA-GGAARAVIYALLQMGV--KDIWVVNRTI 142 (253)
T ss_dssp CCS-SEEEECC-SHHHHHHHHHHHHTTC--CCEEEEESCH
T ss_pred CCC-eEEEECc-HHHHHHHHHHHHHcCC--CEEEEEeCCH
Confidence 357 8999996 8899999999999986 3589999963
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=84.19 E-value=2.4 Score=42.48 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=65.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHH-HHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEE-LFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~-~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.|+|.|.|| |.+|..++..|.+.|+ +.+|.+++|+. ++++. ..+ +.+..+ ......+...+
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~-~~~V~l~d~~~------~~~~~~~~~------~~~~~~--~~~~~~v~~~~-- 68 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAK------ERVEAEVLD------MQHGSS--FYPTVSIDGSD-- 68 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH------HHHHHHHHH------HHHTGG--GSTTCEEEEES--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh------hHHHHHHHH------HHhhhh--hcCCeEEEeCC--
Confidence 478999997 9999999999999886 23588888863 22221 000 000000 10111221110
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
+ . ..++++|+||-+++.... .....+....|+...+.+++...+. .....|.
T Consensus 69 ~---------~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi 121 (319)
T 1lld_A 69 D---------P-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121 (319)
T ss_dssp C---------G-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEE
T ss_pred C---------H-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEE
Confidence 1 1 134689999999865432 2333456777888888888777764 3344443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.93 E-value=1.7 Score=43.36 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=29.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.++|.|.||+|-+|..++..|.+.|++ |++..|+
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~---V~~~~~~ 54 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYP---ISILDRE 54 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCC---EEEECTT
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence 358999999999999999999999887 7777664
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=83.68 E-value=2.5 Score=42.85 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=64.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-HHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
++|.|.|| |.+|..++..|...|. + .|.+.++....... ...+.+... ..+ ...++... .|
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~-~-~V~L~Di~~~~l~~~~~~l~~~~~---------~~~--~~~~i~~t-~d--- 76 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDL-G-DVYMFDIIEGVPQGKALDLNHCMA---------LIG--SPAKIFGE-NN--- 76 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSTTHHHHHHHHHHHHHH---------HHT--CCCCEEEE-SC---
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEECCHHHHHHHHHHHHhHhh---------ccC--CCCEEEEC-CC---
Confidence 68999998 9999999999988876 1 38888886532111 011111110 000 11234332 33
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
+ +.++++|+||-+++... ......+....|+.-.+.+.+...+. ....++
T Consensus 77 ---------~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~-~p~a~v 127 (328)
T 2hjr_A 77 ---------Y-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFV 127 (328)
T ss_dssp ---------G-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHH-CTTCEE
T ss_pred ---------H-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHH-CCCeEE
Confidence 2 34678999999986542 11111234466777777787777664 234443
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=83.49 E-value=2.6 Score=42.36 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=66.3
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|.|+|| |.+|..++..|+..+. ..|.++++..... +....++.+...+ .. ...++..- +|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l--~el~L~Di~~~~~--~g~~~dl~~~~~~------~~--~~~~i~~t-~d----- 61 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY--DDLLLIARTPGKP--QGEALDLAHAAAE------LG--VDIRISGS-NS----- 61 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC--SCEEEECSSTTHH--HHHHHHHHHHHHH------HT--CCCCEEEE-SC-----
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCChhhH--HHHHHHHHHhhhh------cC--CCeEEEEC-CC-----
Confidence 4889998 9999999999988765 4588888864321 1111121110000 00 11223321 33
Q ss_pred CCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 184 LAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 184 lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
+ +.++++|+||-+|+... ......+....|+.-.+.+.+.+.+. .....+
T Consensus 62 -------~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~i 112 (308)
T 2d4a_B 62 -------Y-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIV 112 (308)
T ss_dssp -------G-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEE
T ss_pred -------H-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEE
Confidence 2 24679999999988653 22233456788888889999888874 344333
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=83.36 E-value=1.3 Score=46.79 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=50.8
Q ss_pred ccccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 95 RIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 95 ~i~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
.....+.+++|+|.| .|.+|+.+++.+.+.|.+ |+++...+.. +..+ ..+ ..
T Consensus 28 ~~~~~~~~~~IlIlG-~G~lg~~~~~aa~~lG~~---v~v~d~~~~~--p~~~--------------------~ad--~~ 79 (419)
T 4e4t_A 28 SVSPILPGAWLGMVG-GGQLGRMFCFAAQSMGYR---VAVLDPDPAS--PAGA--------------------VAD--RH 79 (419)
T ss_dssp -CCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCE---EEEECSCTTC--HHHH--------------------HSS--EE
T ss_pred ccccCCCCCEEEEEC-CCHHHHHHHHHHHHCCCE---EEEECCCCcC--chhh--------------------hCC--EE
Confidence 333456789999998 488999999999999876 6677654332 2211 112 24
Q ss_pred EeCCCCCCCCCCCHHHHHHHhccccEEE
Q psy6053 175 ISGDAEADELAIKESDRQLLASEVDIMI 202 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~~vd~Vi 202 (614)
+.+|..+++ .+.++++++|+|+
T Consensus 80 ~~~~~~d~~------~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 80 LRAAYDDEA------ALAELAGLCEAVS 101 (419)
T ss_dssp ECCCTTCHH------HHHHHHHHCSEEE
T ss_pred EECCcCCHH------HHHHHHhcCCEEE
Confidence 457776654 7778888899988
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=83.34 E-value=0.97 Score=46.63 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=28.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEE-ccCCCc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM-RQKKGK 142 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv-R~~~~~ 142 (614)
..+|.|.||||++|..|++.|.+. |.+ ++..+. |+..++
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S~~saGk 46 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAGKGSVGK 46 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEESTTTTS
T ss_pred CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEECchhcCC
Confidence 468999999999999999966554 765 455554 434443
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=83.34 E-value=0.97 Score=46.63 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=28.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEE-ccCCCc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM-RQKKGK 142 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv-R~~~~~ 142 (614)
..+|.|.||||++|..|++.|.+. |.+ ++..+. |+..++
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S~~saGk 46 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAGKGSVGK 46 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEESTTTTS
T ss_pred CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEECchhcCC
Confidence 468999999999999999966554 765 455554 434443
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=83.24 E-value=5.7 Score=39.77 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKS 126 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g 126 (614)
+++|.|.|+.|++|...+..|.+.+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~ 27 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVG 27 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTT
T ss_pred ceEEEEECCChHHHHHHHHHHHhCC
Confidence 4689999998999999999998874
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=83.13 E-value=2.1 Score=44.83 Aligned_cols=37 Identities=22% Similarity=0.473 Sum_probs=31.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
..|++|+|.|+ |-+|..++..|...|. .+|++..|..
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~--~~V~v~~r~~ 201 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTY 201 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSH
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCC--CEEEEEeCCH
Confidence 46899999997 9999999999999875 3688888863
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=82.96 E-value=2.5 Score=42.53 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=60.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHH-HHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIE-ELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~-~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.++|.|.|| |.+|..++..|++.|.. .|.+.+|.... .+... ++.... . .. . ...++... .|
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~--~V~l~D~~~~~---~~~~~~~l~~~~-----~-~~-~-~~~~i~~t-~d-- 66 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLA--DVVLFDIAEGI---PQGKALDITHSM-----V-MF-G-STSKVIGT-DD-- 66 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCC--EEEEECSSSSH---HHHHHHHHHHHH-----H-HH-T-CCCCEEEE-SC--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCchH---HHHHHHHHHhhh-----h-hc-C-CCcEEEEC-CC--
Confidence 468999997 99999999999999861 38888886532 12211 110000 0 00 0 11233321 22
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
+ +.++++|+||-+++...- .....+...-|....+.+++...+.
T Consensus 67 ----------~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~ 111 (317)
T 2ewd_A 67 ----------Y-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY 111 (317)
T ss_dssp ----------G-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------H-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 245789999999865321 1111233455666667777777664
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=82.90 E-value=6.9 Score=41.45 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=55.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+++|+|+|.|. |-.|..+++.|.++|++ |.+.++...... ..++|++ .++.+..|.
T Consensus 7 ~~~k~v~viG~-G~sG~s~A~~l~~~G~~---V~~~D~~~~~~~~~~~~L~~-------------------~gi~~~~g~ 63 (451)
T 3lk7_A 7 FENKKVLVLGL-ARSGEAAARLLAKLGAI---VTVNDGKPFDENPTAQSLLE-------------------EGIKVVCGS 63 (451)
T ss_dssp TTTCEEEEECC-TTTHHHHHHHHHHTTCE---EEEEESSCGGGCHHHHHHHH-------------------TTCEEEESC
T ss_pred cCCCEEEEEee-CHHHHHHHHHHHhCCCE---EEEEeCCcccCChHHHHHHh-------------------CCCEEEECC
Confidence 56899999998 77999999999999977 888877542211 1122221 356666665
Q ss_pred CCCCCCCCCHHHHHHHhcc-ccEEEEcccccChhHHHHHHHH
Q psy6053 179 AEADELAIKESDRQLLASE-VDIMIHGAATIRFDEALKKAVL 219 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~~-vd~ViH~AA~v~~~~~~~~~~~ 219 (614)
-.+ .++++ +|.||.+.|....+..+..+.+
T Consensus 64 ~~~-----------~~~~~~~d~vv~spgi~~~~p~~~~a~~ 94 (451)
T 3lk7_A 64 HPL-----------ELLDEDFCYMIKNPGIPYNNPMVKKALE 94 (451)
T ss_dssp CCG-----------GGGGSCEEEEEECTTSCTTSHHHHHHHH
T ss_pred ChH-----------HhhcCCCCEEEECCcCCCCChhHHHHHH
Confidence 322 23345 8999999887554444444443
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=82.58 E-value=6.6 Score=39.62 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=65.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|.|.|| |.+|..++..|+..|. + .|.+.++.... .+.....+...... .. ...++... .|
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~-~-~v~L~Di~~~~---l~~~~~~l~~~~~~-----~~--~~~~i~~t-~d--- 66 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNL-G-DVVLFDIVKNM---PHGKALDTSHTNVM-----AY--SNCKVSGS-NT--- 66 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSH---HHHHHHHHHTHHHH-----HT--CCCCEEEE-CC---
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEeCCHHH---HHHHHHHHHhhhhh-----cC--CCcEEEEC-CC---
Confidence 368999998 9999999999998876 2 37777776432 12211111111100 00 11233321 33
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHH-----HHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEA-----LKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~-----~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
+ +.++++|+||-+++... .... ..+....|+.-.+.+.+...+. ....++.
T Consensus 67 ---------~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~ii 123 (322)
T 1t2d_A 67 ---------Y-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFII 123 (322)
T ss_dssp ---------G-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEE
T ss_pred ---------H-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEE
Confidence 3 34679999999997542 1111 1234566777777887777764 3344443
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=82.57 E-value=1.2 Score=47.07 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=54.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH--------HHHHhChhhHHhhhhccccccCeE
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI--------EELFASPLFNLLKSVHGQKIIDKV 172 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl--------~~~~~~~~f~~l~~~~p~~~~~~v 172 (614)
++.+|+|.|+ |-+|+.+++.|.+.| |.+|.+++...=..+-..|- .+-.....-+++++..|. -++
T Consensus 39 ~~~~VlvvG~-GGlGs~va~~La~aG--vg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~---v~v 112 (434)
T 1tt5_B 39 DTCKVLVIGA-GGLGCELLKNLALSG--FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN---CNV 112 (434)
T ss_dssp HTCCEEEECS-STHHHHHHHHHHHTT--CCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT---CCC
T ss_pred cCCEEEEECc-CHHHHHHHHHHHHcC--CCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC---CEE
Confidence 5678999996 669999999999998 56788886442111000000 000000011233333444 467
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHhccccEEEEccc
Q psy6053 173 LPISGDAEADELAIKESDRQLLASEVDIMIHGAA 206 (614)
Q Consensus 173 ~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA 206 (614)
+.+..++.+.+ ..+++++|+||.+.-
T Consensus 113 ~~~~~~i~~~~--------~~~~~~~DlVi~~~D 138 (434)
T 1tt5_B 113 VPHFNKIQDFN--------DTFYRQFHIIVCGLD 138 (434)
T ss_dssp EEEESCGGGBC--------HHHHTTCSEEEECCS
T ss_pred EEEecccchhh--------HHHhcCCCEEEECCC
Confidence 78888776532 356789999998743
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.12 E-value=1.6 Score=45.00 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=28.4
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
.|.+|||+|| |-+|...++-+...|. +|++.++++.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga---~Vi~~~~~~~ 229 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGA---HVVAFTTSEA 229 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999998 7799998887766664 3888887653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=82.09 E-value=1.6 Score=44.61 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=30.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
-.|.+|||+|| |-+|...+.-+...|. +|++..+++..
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga---~Vi~~~~~~~~ 212 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMGA---EVSVFARNEHK 212 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTTC---EEEEECSSSTT
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCC---eEEEEeCCHHH
Confidence 45889999997 9999988877777764 48888887644
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=81.93 E-value=1.9 Score=44.28 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=29.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-.|++|||+| +|-+|...+..+...|. +|++.++++
T Consensus 188 ~~g~~VlV~G-~G~vG~~a~qla~~~Ga---~Vi~~~~~~ 223 (363)
T 3uog_A 188 RAGDRVVVQG-TGGVALFGLQIAKATGA---EVIVTSSSR 223 (363)
T ss_dssp CTTCEEEEES-SBHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCC---EEEEEecCc
Confidence 4578999999 89999998887777765 488888753
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=81.71 E-value=0.24 Score=40.36 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=39.2
Q ss_pred cccchHHHHHHHhhcccccc------ccCCCchhhhhhhhHHHHHHHHHHhhcC
Q psy6053 24 DFAIMFADLAIMFADLPIMF------ADFSLPLEFIRCEVIVSELVMAANKVNN 71 (614)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~l~~~~~ 71 (614)
+.+-+|+++|+||+.+..+. .++.++...+++.+|+.+|+..+.+..+
T Consensus 35 ~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~~~ 88 (93)
T 4i4d_A 35 GPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHATLT 88 (93)
T ss_dssp CTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHHTC
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHHcc
Confidence 45568999999999777665 3678888888889999999999987653
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.57 E-value=1.4 Score=45.08 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=27.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
-.|++|||+|+ |-+|...+.-+...|.+ |++..++
T Consensus 167 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~---Vi~~~~~ 201 (352)
T 1e3j_A 167 QLGTTVLVIGA-GPIGLVSVLAAKAYGAF---VVCTARS 201 (352)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCE---EEEEcCC
Confidence 35789999997 88999888877667643 8888775
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=81.55 E-value=2.3 Score=45.28 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=29.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
|+|.|.| +|.+|..++..|.+.|++ |++.+|.+
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~---V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGAN---VRCIDTDR 35 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCE---EEEEECCH
Confidence 6899998 699999999999999976 88888863
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=81.26 E-value=2.6 Score=42.05 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=28.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM 136 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv 136 (614)
..|++|+|.|+++-+|+.++..|++.|.. |++..
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAt---Vtv~h 196 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNAT---VTTCH 196 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCE---EEEEC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCe---EEEEE
Confidence 57899999999999999999999998754 65543
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=81.18 E-value=2 Score=44.39 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=49.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
..+++|+|.| .|.+|+.+++.+.+.|.+ |+++...+...... ..+ ..+.+|.
T Consensus 10 ~~~~~IlIlG-~G~lg~~la~aa~~lG~~---viv~d~~~~~p~~~----------------------~ad--~~~~~~~ 61 (377)
T 3orq_A 10 KFGATIGIIG-GGQLGKMMAQSAQKMGYK---VVVLDPSEDCPCRY----------------------VAH--EFIQAKY 61 (377)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCE---EEEEESCTTCTTGG----------------------GSS--EEEECCT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCE---EEEEECCCCChhhh----------------------hCC--EEEECCC
Confidence 4678999999 577999999999999876 77777654321100 112 2456777
Q ss_pred CCCCCCCCHHHHHHHhccccEEEE
Q psy6053 180 EADELAIKESDRQLLASEVDIMIH 203 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH 203 (614)
.+.+ .+.++++++|+|.-
T Consensus 62 ~d~~------~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 62 DDEK------ALNQLGQKCDVITY 79 (377)
T ss_dssp TCHH------HHHHHHHHCSEEEE
T ss_pred CCHH------HHHHHHHhCCccee
Confidence 7654 78888888998743
|
| >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 | Back alignment and structure |
|---|
Probab=81.16 E-value=3.1 Score=47.72 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=56.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----HHH---HhChhhHHhhhhccccccCeE
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----EEL---FASPLFNLLKSVHGQKIIDKV 172 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~~~---~~~~~f~~l~~~~p~~~~~~v 172 (614)
++.+|+|.|+ |-+|+.+++.|.+.| |.+|.+++...=..+-..|- +++ .....-+++++..|. -+|
T Consensus 410 ~~~~vlvvG~-GglG~~~~~~L~~~G--vg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np~---~~v 483 (805)
T 2nvu_B 410 DTCKVLVIGA-GGLGCELLKNLALSG--FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN---CNV 483 (805)
T ss_dssp HTCCEEEECC-SSHHHHHHHHHHTTT--CCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT---CEE
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcC--CCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHCCC---CEE
Confidence 5679999996 559999999999997 66888887754221111110 000 000112234444454 567
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHhccccEEEEccc
Q psy6053 173 LPISGDAEADELAIKESDRQLLASEVDIMIHGAA 206 (614)
Q Consensus 173 ~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA 206 (614)
+.+..+++..+ ..+++++|+||.|.-
T Consensus 484 ~~~~~~~~~~~--------~~~~~~~d~vv~~~d 509 (805)
T 2nvu_B 484 VPHFNKIQDFN--------DTFYRQFHIIVCGLD 509 (805)
T ss_dssp EEEESCGGGSC--------HHHHHTCSEEEECCS
T ss_pred EEEeccccccH--------HHHHhcCCEEEECCC
Confidence 88888887632 356788999998843
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=80.81 E-value=2.2 Score=42.28 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=28.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEE
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM 136 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv 136 (614)
..|++|+|.|+++-+|+.++..|++.|.. |+...
T Consensus 157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAt---Vtv~h 190 (288)
T 1b0a_A 157 TFGLNAVVIGASNIVGRPMSMELLLAGCT---TTVTH 190 (288)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCE---EEEEC
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHCCCe---EEEEe
Confidence 57899999999999999999999998754 66554
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=80.62 E-value=6.1 Score=40.91 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=27.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
++|.|.|+||.+|+..++.+.+. ++--+|+++.-..
T Consensus 5 ~rI~ILGsTGSIG~~~l~vi~~~-p~~~~v~al~ag~ 40 (388)
T 1r0k_A 5 RTVTVLGATGSIGHSTLDLIERN-LDRYQVIALTANR 40 (388)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-GGGEEEEEEEESS
T ss_pred eEEEEECCCeEeHHHHHHHHHhC-cCcEEEEEEEcCC
Confidence 78999999999999999888775 5533577664443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=80.53 E-value=3.4 Score=41.21 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=30.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
..+++|+|.|+ |-+|+.+++.|...|. +|++..|..
T Consensus 155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~---~V~~~d~~~ 190 (300)
T 2rir_A 155 IHGSQVAVLGL-GRTGMTIARTFAALGA---NVKVGARSS 190 (300)
T ss_dssp STTSEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHHCCC---EEEEEECCH
Confidence 56899999995 9999999999998875 488888863
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.41 E-value=2.7 Score=49.23 Aligned_cols=116 Identities=10% Similarity=0.131 Sum_probs=0.0
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCc-----cEEEEEEcc--------------------CCCcCHHHHHHHH
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNV-----KKIYILMRQ--------------------KKGKNARQRIEEL 151 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v-----~~V~~LvR~--------------------~~~~~~~~Rl~~~ 151 (614)
++..++.+|+|.|+ |-+|+.+++.|.+.| | .+|.+++.. .+...+.++++++
T Consensus 420 q~kL~~~~VlvVGa-GGlGsevlk~La~~G--v~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~~i 496 (1015)
T 3cmm_A 420 QKKIANSKVFLVGS-GAIGCEMLKNWALLG--LGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAM 496 (1015)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHHT--TTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred HHHHhcCeEEEEec-CHHHHHHHHHHHHcC--cCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHHHHHHHHHHH
Q ss_pred HhChhhHHhhhhccccccCeEEEEeCCCCCCCCCCCHHHH----HHHhccccEEEEcccccChhHHHHHHHHHhHHHHHH
Q psy6053 152 FASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDR----QLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKM 227 (614)
Q Consensus 152 ~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~lGLs~~~~----~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ 227 (614)
.|+ ...+|+.+...++... . ..++++.|+|+.+.- |+..-..
T Consensus 497 ------------NP~-v~~~v~~~~~~i~~~~-------~~~~~~~~~~~~D~Vi~a~D--------------n~~aR~~ 542 (1015)
T 3cmm_A 497 ------------NPD-LKGKINAKIDKVGPET-------EEIFNDSFWESLDFVTNALD--------------NVDARTY 542 (1015)
T ss_dssp ------------CGG-GTTTEEEECCCCSGGG-------TTTSCHHHHHHCSEEEECCS--------------SHHHHHH
T ss_pred ------------CCC-CcceEEEEecccCchh-------hhhccHhhhccCCEEEECCC--------------CHHHHHH
Q ss_pred HHHHHHHcCCCceEEEEeCceecc
Q psy6053 228 MLSLAKEMKHLELFVHISTAYCHL 251 (614)
Q Consensus 228 ll~la~~~~~~k~~V~vST~~~~~ 251 (614)
+-+.|.... +++|+.++....+
T Consensus 543 ln~~c~~~~--~Pli~~g~~G~~G 564 (1015)
T 3cmm_A 543 VDRRCVFYR--KPLLESGTLGTKG 564 (1015)
T ss_dssp HHHHHHHHT--CCEEEEEEETTEE
T ss_pred HHHHHHHcC--CcEEEeCCCcccc
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.36 E-value=8.3 Score=38.68 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=26.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+++|.|.|+.|++|...+..|.+.+.+ -|.+..|..
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~--lvav~d~~~ 38 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNC--LVSAYDIND 38 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCE--EEEEECSSC
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCE--EEEEEcCCH
Confidence 468999998899999999999886433 233444443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=80.26 E-value=3.2 Score=42.70 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=28.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
-.|.+|||+|| |-+|...+.-+...|.. +|++..++
T Consensus 181 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~--~Vi~~~~~ 216 (370)
T 4ej6_A 181 KAGSTVAILGG-GVIGLLTVQLARLAGAT--TVILSTRQ 216 (370)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCS--EEEEECSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCC--EEEEECCC
Confidence 35789999998 89999988877777753 57777665
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=80.05 E-value=1.8 Score=44.72 Aligned_cols=35 Identities=9% Similarity=-0.069 Sum_probs=28.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
-.|.+|+|+||+|-+|...+.-+...|.+ |++.++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~---Vi~~~~ 197 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYI---PIATCS 197 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEEC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCE---EEEEeC
Confidence 45789999999999999998888777754 776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 614 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-07 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 3e-07 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-05 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-04 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 1e-04 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-04 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 4e-04 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 5e-04 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 51.3 bits (122), Expect = 1e-07
Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 66/294 (22%)
Query: 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHG 165
+TG +GF+G ++ I++ + + + + + N + + ++ S +N
Sbjct: 4 LITGGAGFIGSAVVRHIIKNTQDT--VVNIDKLTYAGN-LESLSDISESNRYNFEH---- 56
Query: 166 QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLL---NT 222
AD E R + D ++H AA D ++ N
Sbjct: 57 ---------------ADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNI 101
Query: 223 RGTKMMLSLAKEM--------KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERV 274
GT +L +A++ K+ F HIST + P D + +
Sbjct: 102 VGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVY---------GDLPHPDEVENSVTL 152
Query: 275 EMMSEDTVEKRAKEFLGEFPNS-YAYTKCLSEGLVVE-AMNNGMPCLMLRPSIIIPVWRE 332
+ +E T P+S Y+ +K S+ LV G+P ++ S +
Sbjct: 153 PLFTETTAYA---------PSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF 203
Query: 333 P---LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAI 383
P +P N +G ++ D+L V+ + + +
Sbjct: 204 PEKLIPLVILNAL----------EGKPLPIYGKGDQIRDWLYVEDHARALHMVV 247
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (119), Expect = 3e-07
Identities = 53/346 (15%), Positives = 106/346 (30%), Gaps = 67/346 (19%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
K + +TG +GF+G L +K++ V + +K + +E F L+
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK-----RNVEHWIGHENFELIN- 55
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLL-- 220
+++ + EVD + H A+ + +
Sbjct: 56 ---HDVVEPLY----------------------IEVDQIYHLASPASPPNYMYNPIKTLK 90
Query: 221 -NTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSE 279
NT GT ML LAK + + ST+ Y P P
Sbjct: 91 TNTIGTLNMLGLAK--RVGARLLLASTSEV-------YGDPEVHPQS------------- 128
Query: 280 DTVEKRAKEFLGEFPNS-YAYTKCLSEGLVVEAMNN-GMPCLMLRPSIIIPVWREPLPGW 337
E P + Y K ++E + M G+ + R
Sbjct: 129 ---EDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM---- 181
Query: 338 TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397
++ + ++ A +G T++ + F V +NG+ + + +S + +
Sbjct: 182 -NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPE 240
Query: 398 HLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLL 443
+ E+ + ++ G I + K+ +L
Sbjct: 241 E-HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLML 285
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (106), Expect = 1e-05
Identities = 40/226 (17%), Positives = 69/226 (30%), Gaps = 47/226 (20%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
K +TG +G G L E +L K V + + R+ N +R++ ++ P
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEV---HGIKRRASSFN-TERVDHIYQDPH------ 51
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNT 222
K GD +D + R++ EV + + E+ + ++
Sbjct: 52 ----TCNPKFHLHYGDL-SDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDA 106
Query: 223 RGTKMMLSLAKE--MKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSED 280
GT +L + ++ F ST+ Y P E
Sbjct: 107 MGTLRLLEAIRFLGLEKKTRFYQASTSEL-------YGLVQEIPQK------------ET 147
Query: 281 TVEKRAKEFLGEFPNS-YAYTKCLSEGLVVE-AMNNGMPCLMLRPS 324
T P S YA K + + V + GM
Sbjct: 148 TPFY---------PRSPYAVAKLYAYWITVNYRESYGMYACNGILF 184
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 42.5 bits (99), Expect = 1e-04
Identities = 45/330 (13%), Positives = 88/330 (26%), Gaps = 64/330 (19%)
Query: 106 FMTGASGFLGKVLLEKILRKSPNV---KKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
+TG +GF+G + ++L + ++ +L N R + + A P +
Sbjct: 4 LVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN-RANLAPVDADPRLRFVHG 62
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNT 222
I D L D + + R N
Sbjct: 63 ----DIRDAGLLARELRGVD--------------AIVHFAAESHVDRSIAGASVFTETNV 104
Query: 223 RGTKMMLSLAKEMKHLELFVHIS--TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSED 280
+GT+ +L A + VH+S Y + E P P
Sbjct: 105 QGTQTLLQCAVDAGV-GRVVHVSTNQVYGSIDSGSWTESSPLEPNSP------------- 150
Query: 281 TVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNN-GMPCLMLRPSIIIPVWREPLPGWTD 339
YA +K S+ + G+ + R G
Sbjct: 151 ----------------YAASKAGSDLVARAYHRTYGLDVRITRCCNNY--------GPYQ 186
Query: 340 NINGPTGLLIG-AGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398
+ L + G ++ D +++ D GI + + + + +
Sbjct: 187 HPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRAGEIYHIGGGL 246
Query: 399 LTSSQEWQVSWQEIIDIGKSIVTTEVPLNG 428
+++E + + S V G
Sbjct: 247 ELTNRELTGILLDSLGADWSSVRKVADRKG 276
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 51/352 (14%), Positives = 100/352 (28%), Gaps = 70/352 (19%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
K + +TG +G++G + +++ + L AR + P +
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFY----- 56
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK---KAVL 219
E D K ++ ++D +IH A E+ + +
Sbjct: 57 -----------------EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYH 99
Query: 220 LNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPY--PPPTDPHKLIERVEMM 277
N GT ++L L ++ + S + P P P
Sbjct: 100 NNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPT--------- 150
Query: 278 SEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLRPSIIIPVWREPL 334
N Y +TK E ++ + N +LR I L
Sbjct: 151 -----------------NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGL 193
Query: 335 PGWTDNINGPTGLLIG------AGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388
G ++ G L+ G+ +F D+ D P+ I+ + +A +
Sbjct: 194 IG--EDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAA 251
Query: 389 QKEHRQSIVHLTSSQEW------QVSWQEIIDIGKSIVTTEVPLNGCVWYPG 434
+ + +EW + E+ ++P G
Sbjct: 252 LQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAG 303
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 41.5 bits (96), Expect = 2e-04
Identities = 50/414 (12%), Positives = 119/414 (28%), Gaps = 73/414 (17%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
K + +TG +GF+G + + P+V + +L + N + +E + + ++
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVH-VTVLDKLTYAGN-KANLEAILGDRVELVVGD 60
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNT 222
+ +++DK+ + + + + N
Sbjct: 61 IADAELVDKLAAKADA-------------------IVHYAAESHNDNSLNDPSPFIHTNF 101
Query: 223 RGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTV 282
GT +L A++ V Y L + P + + +T
Sbjct: 102 IGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEK---------FTAETN 152
Query: 283 EKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNN-GMPCLMLRPSIIIPVWREPLPGWTDNI 341
+ + Y+ TK S+ +V + + G+ + S ++ I
Sbjct: 153 YNPS--------SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQI 204
Query: 342 NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401
G+ ++ + D++ + G++ + + + +
Sbjct: 205 TN-------ILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKN 257
Query: 402 SQEWQVSWQEIIDIGKSIVTTEVPLNGCV-WYPGGSMKSNRLLHQICVIFFHMIPAYFLD 460
++E E + K G Y + K L
Sbjct: 258 NKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDEL----------------- 300
Query: 461 AIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERI 514
G P + + + ++Y +NQ ++ E V +E I
Sbjct: 301 ------GWTPQFTDFSEGLEE---TIQWYTDNQDWWKAEKEAVEANYAKTQEVI 345
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.7 bits (94), Expect = 4e-04
Identities = 55/333 (16%), Positives = 104/333 (31%), Gaps = 49/333 (14%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
K +TG +GF+G LLE +L+ V + + ++S
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDE--------------VRS 62
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNT 222
+ +K I GD + V + R + N
Sbjct: 63 LVSEKQWSNFKFIQGDIRNLDDCNNACAGV---DYVLHQAALGSVPRSINDPITSNATNI 119
Query: 223 RGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTV 282
G ML A++ K + F + +++ Y P EDT+
Sbjct: 120 DGFLNMLIAARDAKV-QSFTYAASSST-------YGDHPGLPKV------------EDTI 159
Query: 283 EKRAKEFLGEFPNSYAYTKCLSEGLVVE-AMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341
G+ + YA TK ++E + G + LR + ++P + I
Sbjct: 160 --------GKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVI 211
Query: 342 NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401
T +I +G + D DF ++ T+ +A A L + +I
Sbjct: 212 PKWTSSMI---QGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGR 268
Query: 402 SQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPG 434
+ Q+ + + ++ V+ + G
Sbjct: 269 TSLNQLFFALRDGLAENGVSYHREPVYRDFREG 301
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 48/245 (19%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
+TG +G G L E +L K V + ++R+ N RIE L+ +P ++ +
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEV---HGIVRRSSSFNT-GRIEHLYKNPQAHIEGN 57
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNT 222
+ GD D + + ++ +E+ + + + + ++
Sbjct: 58 MK---------LHYGDL-TDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDG 107
Query: 223 RGTKMMLSLAKE--MKHLELFVHISTA--YCHLQEKVLYEKPYPPPTDPHKLIERVEMMS 278
GT +L K + + F ST+ Y +QE E P P
Sbjct: 108 VGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSP----------- 156
Query: 279 EDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE-AMNNGMPCLMLRPSIIIPVWREPLPGW 337
Y K + +VV + + R
Sbjct: 157 ------------------YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVT 198
Query: 338 TDNIN 342
Sbjct: 199 RKISR 203
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 614 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.98 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.98 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.97 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.97 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.97 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.97 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.97 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.97 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.96 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.96 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.94 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.93 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.92 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.91 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.91 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.89 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.89 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.88 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.87 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.81 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.61 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.6 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.57 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.57 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.56 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.56 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.56 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.55 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.55 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.54 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.54 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.54 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.53 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.53 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.53 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.53 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.53 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.53 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.53 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.52 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.52 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.52 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.52 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.51 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.5 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.5 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.49 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.49 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.49 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.47 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.47 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.47 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.46 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.46 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.45 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.45 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.43 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.43 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.42 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.42 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.4 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.4 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.39 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.38 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.38 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.38 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.38 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.36 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.36 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.35 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.35 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.35 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.3 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.28 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.27 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.26 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.24 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.18 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.15 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.1 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.07 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 98.92 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 98.89 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 98.87 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 98.85 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 98.68 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.57 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.21 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.96 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.89 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.87 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.85 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.82 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.81 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.77 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.59 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.42 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.14 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.13 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.13 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.09 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.08 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.03 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.94 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.88 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.73 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 95.55 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.55 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.5 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.44 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 95.42 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.38 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.13 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 94.92 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.84 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 94.79 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.77 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.67 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.55 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.52 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 93.8 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 93.62 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.61 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.51 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.44 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.21 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 92.92 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 92.76 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.74 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 92.38 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 92.33 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 92.3 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 91.73 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 91.01 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 90.73 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 90.64 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 90.37 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 90.32 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 90.24 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 89.69 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.4 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 89.23 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.13 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 88.04 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.03 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.7 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 87.67 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 87.47 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 87.3 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 86.59 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 86.41 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 86.23 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 86.09 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 85.39 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.39 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 85.37 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 85.02 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 85.0 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 84.96 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 84.48 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 84.17 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 83.83 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 83.63 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 83.17 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 83.11 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 82.77 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 82.31 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 81.93 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 81.19 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 80.79 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.21 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-35 Score=310.40 Aligned_cols=262 Identities=16% Similarity=0.099 Sum_probs=193.0
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|.|||||||||||++|+++|++.|++ |++++|...... .+|++.+...+ .. ...+++++.||+++.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~---V~~~~r~~~~~~-~~~~~~~~~~~---------~~-~~~~~~~~~~Dl~d~ 67 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYE---VHGIKRRASSFN-TERVDHIYQDP---------HT-CNPKFHLHYGDLSDT 67 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEECC--------------------------------CCEEECCCCSSCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCE---EEEEECCCcccc-hhhHHHHHhhh---------hh-cCCCeEEEEeecCCH
Confidence 78999999999999999999999987 899999654321 23444332211 11 446899999999986
Q ss_pred CCCCCHHHHHHHhccc--cEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHc--CCCceEEEEeCceeccCC--
Q psy6053 183 ELAIKESDRQLLASEV--DIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHISTAYCHLQE-- 253 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~v--d~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~V~vST~~~~~~~-- 253 (614)
+ +++++++++ |+|||+||..+.. ++....+++|+.||.+|+++|++. ++.++|||+||+.+++..
T Consensus 68 ~------~~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~ 141 (357)
T d1db3a_ 68 S------NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQE 141 (357)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCS
T ss_pred H------HHHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCC
Confidence 6 888888855 9999999986543 334567899999999999999985 234579999999877643
Q ss_pred cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 254 KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 254 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
.+++|+....|. |.|+.||+.+|++++.+.+ .+++++++||++|||++..
T Consensus 142 ~~~~E~~~~~P~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~ 192 (357)
T d1db3a_ 142 IPQKETTPFYPR-----------------------------SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRG 192 (357)
T ss_dssp SSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred CCcCCCCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC
Confidence 367777544333 7899999999999999887 6899999999999998653
Q ss_pred CCccccCCCCchHHHHHHHhcCce-eeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 333 PLPGWTDNINGPTGLLIGAGKGVI-RTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 333 p~~gw~d~~~g~~~~~~~~~~g~~-~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
+.. ........+.....|.. ....+++++.+|+++|+|+|++++.++.+. .+++||++++ +++|+.|
T Consensus 193 ~~~----~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~------~~~~yni~sg--~~~s~~~ 260 (357)
T d1db3a_ 193 ETF----VTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE------QPEDFVIATG--VQYSVRQ 260 (357)
T ss_dssp TTS----HHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS------SCCCEEECCC--CCEEHHH
T ss_pred cCC----CchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCC------CCCeEEECCC--CceehHH
Confidence 210 00111234444445543 445688999999999999999999887542 5679999999 8899999
Q ss_pred HHHHHhhhcccccC
Q psy6053 412 IIDIGKSIVTTEVP 425 (614)
Q Consensus 412 ~~~~~~~~~g~~~p 425 (614)
+++.+.+.+|...+
T Consensus 261 ~~~~~~~~~g~~~~ 274 (357)
T d1db3a_ 261 FVEMAAAQLGIKLR 274 (357)
T ss_dssp HHHHHHHTTTEEEE
T ss_pred HHHHHHHHhCCccc
Confidence 99999999886544
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=3.6e-34 Score=295.83 Aligned_cols=304 Identities=17% Similarity=0.171 Sum_probs=229.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCcc---EEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVK---KIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~---~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
|+|||||||||||++|+++|++.|++|. +|+.+.+....... .+ +. ..+ ...++.++.+|+
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~-~~------------~~--~~~-~~~~~~~~~~d~ 64 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-AN------------LA--PVD-ADPRLRFVHGDI 64 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GG------------GG--GGT-TCTTEEEEECCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH-hH------------hh--hhh-cCCCeEEEEecc
Confidence 6899999999999999999999998653 56666654332211 00 00 111 346899999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
++.. ........+|+|+|+|+...... ......++|+.||.+++++|.+. ++++|||+||+.+++...
T Consensus 65 ~~~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~I~~Ss~~~yg~~~~~ 137 (322)
T d1r6da_ 65 RDAG------LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSIDSG 137 (322)
T ss_dssp TCHH------HHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCCSSS
T ss_pred ccch------hhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CCceEEEeecceeecCCCCC
Confidence 9865 67777789999999998765433 34567899999999999999995 889999999998877543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+++|+....|. +.|+.||..+|.+++.+.+ .+++++++||+.|||+.+.+
T Consensus 138 ~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~ 188 (322)
T d1r6da_ 138 SWTESSPLEPN-----------------------------SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP 188 (322)
T ss_dssp CBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT
T ss_pred CCCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCc
Confidence 56776443332 7899999999999999877 79999999999999987532
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
+ .-...++..+..|....+++++++.+|++||+|+|++++.++.+.. .+++||++++ +++++.|++
T Consensus 189 -----~--~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~-----~~~~~ni~~~--~~~s~~e~~ 254 (322)
T d1r6da_ 189 -----E--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-----AGEIYHIGGG--LELTNRELT 254 (322)
T ss_dssp -----T--SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCC--CEEEHHHHH
T ss_pred -----C--cHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCC-----CCCeeEEeec--ccchhHHHH
Confidence 1 1234566777888777778999999999999999999999997754 5789999999 899999999
Q ss_pred HHHhhhcccccCCCC-ccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcc
Q psy6053 414 DIGKSIVTTEVPLNG-CVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANN 492 (614)
Q Consensus 414 ~~~~~~~g~~~p~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~ 492 (614)
+.+.+.+|.+.+... ....|...... ..-.+.+.+.+||+|+. .+.+.+.+ +++||..+
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~~~~~----------------~~d~~k~~~~lg~~p~~-~~eegI~~---~i~w~~~n 314 (322)
T d1r6da_ 255 GILLDSLGADWSSVRKVADRKGHDLRY----------------SLDGGKIERELGYRPQV-SFADGLAR---TVRWYREN 314 (322)
T ss_dssp HHHHHHHTCCGGGEEEECCCTTCCCBC----------------CBCCHHHHHHHCCCCCS-CHHHHHHH---HHHHHHHC
T ss_pred HHHHHHhCCCccceeecCCCCCCCcee----------------eeCHHHHHHHHCCCCCC-CHHHHHHH---HHHHHHHh
Confidence 999999888755432 11222211000 00123445778999987 67888887 66677643
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-33 Score=292.68 Aligned_cols=311 Identities=16% Similarity=0.121 Sum_probs=221.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+|||||||||||++|+++|+++|++ |++++|...+.. ....++.. ...++.+++||+++
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~---V~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~d 61 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHD---VIILDNLCNSKRSVLPVIERL----------------GGKHPTFVEGDIRN 61 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCTTHHHHHHHH----------------HTSCCEEEECCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE---EEEEECCCCcchhhHHHHHhh----------------cCCCCEEEEeecCC
Confidence 67999999999999999999999987 888888654422 22222221 33579999999998
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
.+ .+.++++ ++|+|||+||...... .....+++|+.||.++|++|++. ++++|||+||..+++...
T Consensus 62 ~~------~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss~~vy~~~~~~ 134 (338)
T d1udca_ 62 EA------LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDQPKI 134 (338)
T ss_dssp HH------HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCCSS
T ss_pred HH------HHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEecCcceEEcccccc
Confidence 76 7888877 7899999999876443 33578999999999999999995 899999999998775543
Q ss_pred ccccc-cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecceeecccC
Q psy6053 255 VLYEK-PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 ~i~E~-~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~I~g~~~ 331 (614)
...|. ....| .+.|+.+|..+|+++.++.. .+++++++||+.|||+..
T Consensus 135 ~~~e~~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~ 185 (338)
T d1udca_ 135 PYVESFPTGTP-----------------------------QSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHP 185 (338)
T ss_dssp SBCTTSCCCCC-----------------------------SSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCT
T ss_pred ccccccccCCC-----------------------------cchHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccC
Confidence 23332 11111 27899999999999986655 589999999999999977
Q ss_pred CCCccccCCC--CchHHHHHHHhc--CceeeEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 332 EPLPGWTDNI--NGPTGLLIGAGK--GVIRTMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 332 ~p~~gw~d~~--~g~~~~~~~~~~--g~~~~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
.+.-|..... ......+..... +....+.| ++.+.+|+++|+|+++++..+...... ...+++||+++
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~--~~~~~i~Ni~~ 263 (338)
T d1udca_ 186 SGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAN--KPGVHIYNLGA 263 (338)
T ss_dssp TSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHTT--CCEEEEEEESC
T ss_pred CCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEeehhhhcccccccccc--ccCcceeeecC
Confidence 6543322111 112233333222 22334444 367889999999999998887776543 12567999999
Q ss_pred CCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy6053 402 SQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINK 481 (614)
Q Consensus 402 ~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~ 481 (614)
+ +++|+.|+++.+.+.+|.+.+.......|.... .. . .-.+.+.+.+||+|.. .+.+.+.+
T Consensus 264 ~--~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~--~~------------~--~d~~k~~~~lgwkp~~-~l~egi~~ 324 (338)
T d1udca_ 264 G--VGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP--AY------------W--ADASKADRELNWRVTR-TLDEMAQD 324 (338)
T ss_dssp S--SCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCS--BC------------C--BCCHHHHHHHCCCCCC-CHHHHHHH
T ss_pred C--CCCcHHHHHHHHHHHHCCCCceEECCCCCCCCC--Ee------------e--ECHHHHHHHHCCCcCC-CHHHHHHH
Confidence 8 899999999999999888766542211221100 00 0 0123456789999987 68888887
Q ss_pred HHhhhhhhhcc
Q psy6053 482 GFEVFEYYANN 492 (614)
Q Consensus 482 ~~~~~~~f~~~ 492 (614)
+++||..+
T Consensus 325 ---ti~w~~~~ 332 (338)
T d1udca_ 325 ---TWHWQSRH 332 (338)
T ss_dssp ---HHHHHHHC
T ss_pred ---HHHHHHhc
Confidence 56677644
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-34 Score=298.36 Aligned_cols=296 Identities=20% Similarity=0.206 Sum_probs=216.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||+|++|+++|++.|++ |++++|...+.. +.+.. .. ...++....+|+.+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~---V~~~d~~~~~~~--~~~~~--------------~~-~~~~~d~~~~~~~~~ 61 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHE---VTVVDNFFTGRK--RNVEH--------------WI-GHENFELINHDVVEP 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCG--GGTGG--------------GT-TCTTEEEEECCTTSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCE---EEEEeCCCcCCH--HHHHH--------------hc-CCCceEEEehHHHHH
Confidence 78999999999999999999999987 888887443321 00100 00 334677777777654
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--ccc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VLY 257 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i~ 257 (614)
. ..++|+|||+||.++.. ......+++|+.||.+|+++|++. ++ ++||+||..+++... +++
T Consensus 62 ~-----------~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~~-k~I~~SS~~vy~~~~~~~~~ 128 (312)
T d2b69a1 62 L-----------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDPEVHPQS 128 (312)
T ss_dssp C-----------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSSSBC
T ss_pred H-----------HcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEChheecCCCCCCCC
Confidence 3 35799999999987643 234567899999999999999995 54 799999998877543 566
Q ss_pred cccCC--CCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCC
Q psy6053 258 EKPYP--PPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 258 E~~~~--~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~ 334 (614)
|+.+. .|..|. +.|+.||.++|.++..+.+ .|++++++||+.|||+...+-
T Consensus 129 e~~~~~~~~~~p~--------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~ 182 (312)
T d2b69a1 129 EDYWGHVNPIGPR--------------------------ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 182 (312)
T ss_dssp TTCCCBCCSSSTT--------------------------HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTT
T ss_pred ccccCCCCCCCCc--------------------------cHHHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCC
Confidence 65332 122221 6899999999999999877 799999999999999875431
Q ss_pred ccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHH
Q psy6053 335 PGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIID 414 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~ 414 (614)
.+ .-...++..+..|....+++++.+.+|++||+|++++++.++... .+++||++++ .++++.++.+
T Consensus 183 ~~-----~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~------~~~~~n~~~~--~~~~~~~~~~ 249 (312)
T d2b69a1 183 DG-----RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN------VSSPVNLGNP--EEHTILEFAQ 249 (312)
T ss_dssp CC-----CHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS------CCSCEEESCC--CEEEHHHHHH
T ss_pred Cc-----cHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhc------cCCceEecCC--cccchhhHHH
Confidence 11 123356777788887778899999999999999999998887432 5678999999 8999999999
Q ss_pred HHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 415 IGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 415 ~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
.+.+.+|.+.++......+.... .. .+ -.+.+.+.+||+|.. .+.+.|.+ +++||.
T Consensus 250 ~i~~~~~~~~~~~~~~~~~~~~~---~~-----------~~--d~~k~~~~lgw~p~~-~l~~~I~~---~i~w~~ 305 (312)
T d2b69a1 250 LIKNLVGSGSEIQFLSEAQDDPQ---KR-----------KP--DIKKAKLMLGWEPVV-PLEEGLNK---AIHYFR 305 (312)
T ss_dssp HHHHHHTCCCCEEEECCCTTCCC---CC-----------CB--CCHHHHHHHCCCCCS-CHHHHHHH---HHHHHH
T ss_pred HHHHHhCCCCceEECCCCCCCCC---ee-----------eE--CHHHHHHHHCCCCCC-CHHHHHHH---HHHHHH
Confidence 99999888765542211221110 00 00 124456788999987 67788876 556664
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=3.3e-33 Score=293.49 Aligned_cols=313 Identities=17% Similarity=0.165 Sum_probs=222.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|++.|+++ |.++.+...... .+++..+ . ...+++++.+|++++
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~v--v~~~d~~~~~~~-~~~~~~~--------------~-~~~~~~~~~~Dl~d~ 62 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDT--VVNIDKLTYAGN-LESLSDI--------------S-ESNRYNFEHADICDS 62 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCE--EEEEECCCTTCC-GGGGTTT--------------T-TCTTEEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCE--EEEEeCCCcccc-HHHHHhh--------------h-hcCCcEEEEccCCCH
Confidence 689999999999999999999999873 666665433221 1111111 1 346899999999997
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhHH---HHHHHHHhHHHHHHHHHHHHHcC--------CCceEEEEeCcee
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMK--------HLELFVHISTAYC 249 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~---~~~~~~~Nv~gt~~ll~la~~~~--------~~k~~V~vST~~~ 249 (614)
. .+..+++ ++|+|||+||..+.... ....+++|+.||.+++++|++.. ++++|||+||..+
T Consensus 63 ~------~l~~~~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~v 136 (361)
T d1kewa_ 63 A------EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEV 136 (361)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGG
T ss_pred H------HHHHHHHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEecccee
Confidence 6 7777776 58999999998764432 24578999999999999998751 3468999999988
Q ss_pred ccCCc--ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeeccee
Q psy6053 250 HLQEK--VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSII 326 (614)
Q Consensus 250 ~~~~~--~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I 326 (614)
++... ...|.....|...+. + ....-+.|+.||.++|+++..+.+ .+++++++||++|
T Consensus 137 yg~~~~~~~~~~~~~~~~~~e~----------------~---~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~v 197 (361)
T d1kewa_ 137 YGDLPHPDEVENSVTLPLFTET----------------T---AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNN 197 (361)
T ss_dssp GCCCCCGGGSCTTSCCCCBCTT----------------S---CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEE
T ss_pred eCCCccCCccccccCCCCcccC----------------C---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCce
Confidence 87654 233332222221100 0 001126799999999999999887 6999999999999
Q ss_pred ecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc
Q psy6053 327 IPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ 406 (614)
Q Consensus 327 ~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~ 406 (614)
||+...+ ++ -...++..+.+|....+++++++.+|++||+|+|++++.++.+.. .+++||++++ ++
T Consensus 198 yGp~~~~-----~~--~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~-----~~~~~Ni~s~--~~ 263 (361)
T d1kewa_ 198 YGPYHFP-----EK--LIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK-----AGETYNIGGH--NE 263 (361)
T ss_dssp ESTTCCT-----TS--HHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCC--CE
T ss_pred ECcCCCc-----Cc--HHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCC-----CCCeEEECCC--CC
Confidence 9986532 11 123567777888877778999999999999999999999998754 5679999999 88
Q ss_pred ccHHHHHHHHhhhcccccCCCCc--------cccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHH
Q psy6053 407 VSWQEIIDIGKSIVTTEVPLNGC--------VWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDR 478 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~~p~~~~--------~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~k 478 (614)
.++.|+++.+.+.++...+.... ...|... .. +.+ -.+.+.+.+||+|+. .+.+.
T Consensus 264 ~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~~--d~~k~~~~lgw~P~~-~l~e~ 326 (361)
T d1kewa_ 264 KKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHD---RR-----------YAI--DAGKISRELGWKPLE-TFESG 326 (361)
T ss_dssp EEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCC---CB-----------CCB--CCHHHHHHHCCCCSC-CHHHH
T ss_pred cchHHHHhHhhhhcccccccccCcccceeecCCCCCCC---ce-----------eee--CHHHHHHHHCCCCCC-CHHHH
Confidence 99999999998875554332210 0111110 00 000 123456778999987 68888
Q ss_pred HHHHHhhhhhhhcc
Q psy6053 479 INKGFEVFEYYANN 492 (614)
Q Consensus 479 i~~~~~~~~~f~~~ 492 (614)
+.+ +++||..+
T Consensus 327 i~~---ti~w~~~n 337 (361)
T d1kewa_ 327 IRK---TVEWYLAN 337 (361)
T ss_dssp HHH---HHHHHHHC
T ss_pred HHH---HHHHHHHh
Confidence 887 66677654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.4e-33 Score=291.81 Aligned_cols=313 Identities=18% Similarity=0.164 Sum_probs=229.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC-HHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN-ARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~-~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+.|+|||||||||+|++|+++|++.|++ |++++|...+.. ..+++....... ...+++++.+|+
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~---V~~~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~d~ 79 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQK---VVGLDNFATGHQRNLDEVRSLVSEK------------QWSNFKFIQGDI 79 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCHHHHHHHHHHSCHH------------HHTTEEEEECCT
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCE---EEEEECCCCcchhhHHHHHHhhhhc------------ccCCeeEEeecc
Confidence 4589999999999999999999999987 899988654432 122222221100 335789999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
.+.. .........+.|+|+||..... ......+++|+.||.+++++|++. ++++|||+||..+++...
T Consensus 80 ~d~~------~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~ 152 (341)
T d1sb8a_ 80 RNLD------DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGL 152 (341)
T ss_dssp TSHH------HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCS
T ss_pred cccc------ccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEcccceeeCCCCCC
Confidence 9865 6777778899999999976643 334557899999999999999995 889999999998877543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+++|+....|. +.|+.||..+|+++..+.+ .+++++|+||+.|||+...|
T Consensus 153 ~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~ 203 (341)
T d1sb8a_ 153 PKVEDTIGKPL-----------------------------SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDP 203 (341)
T ss_dssp SBCTTCCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCC
T ss_pred CccCCCCCCCC-----------------------------CcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCC
Confidence 67776544443 7899999999999998877 68999999999999998765
Q ss_pred CccccCCCCch-HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHH
Q psy6053 334 LPGWTDNINGP-TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEI 412 (614)
Q Consensus 334 ~~gw~d~~~g~-~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~ 412 (614)
...+ .+. ..++..+..|....+.+++.+.+|++||+|+|.++..++..... ..+++||++++ ++.|+.|+
T Consensus 204 ~~~~----~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~---~~~~~~~~~~~--~~~si~~i 274 (341)
T d1sb8a_ 204 NGAY----AAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLD---ARNQVYNIAVG--GRTSLNQL 274 (341)
T ss_dssp CSTT----CCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGG---GCSEEEEESCS--CCEEHHHH
T ss_pred CCch----hhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhcccc---ccceeeeeccc--ccchHHHH
Confidence 3211 122 24556677787777889999999999999999999888865432 25789999998 88999999
Q ss_pred HHHHhhhcccccCCCC--ccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 413 IDIGKSIVTTEVPLNG--CVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 413 ~~~~~~~~g~~~p~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
.+.+.+.++.+..... ....+... .... +..+ -.+.+.+.+||+|+. .+.+.+.+ +++||.
T Consensus 275 ~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~--d~~k~~~~LGw~p~~-sl~~gi~~---ti~wy~ 337 (341)
T d1sb8a_ 275 FFALRDGLAENGVSYHREPVYRDFRE---GDVR--------HSLA--DISKAAKLLGYAPKY-DVSAGVAL---AMPWYI 337 (341)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEECCCT---TCCS--------BCCB--CCHHHHHHTCCCCCC-CHHHHHHH---HHHHHH
T ss_pred HHHHHHHhccccccccccccccCCCC---CCcC--------eeee--CHHHHHHHHCCCcCC-CHHHHHHH---HHHHHH
Confidence 9999998776421111 11111100 0000 0000 123456788999988 68888887 555664
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.7e-33 Score=293.68 Aligned_cols=318 Identities=17% Similarity=0.180 Sum_probs=224.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||+|++|+++|++.|++| +|+++++...... ..++. +. ...+++++.||+++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v-~v~~~d~~~~~~~-~~~~~---------------~~-~~~~i~~~~~Di~d 63 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYAGN-KANLE---------------AI-LGDRVELVVGDIAD 63 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECCCTTCC-GGGTG---------------GG-CSSSEEEEECCTTC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCe-EEEEEeCCCcccc-HHHHH---------------Hh-hcCCeEEEEccCCC
Confidence 5899999999999999999999999985 3555544322211 11111 11 34689999999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHH---HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYE 258 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~---~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E 258 (614)
.+ .+..+.++.+.|+|+|+....... ....+++|+.||.++++.|++. + .++|++||..+++... ..|
T Consensus 64 ~~------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~-~-~k~i~~ss~~vyg~~~-~~~ 134 (346)
T d1oc2a_ 64 AE------LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D-IRFHHVSTDEVYGDLP-LRE 134 (346)
T ss_dssp HH------HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEGGGGCCBC-CGG
T ss_pred HH------HHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccc-c-ccccccccceEecccC-ccc
Confidence 66 889999999999999998765432 3467899999999999999995 4 5789999998776432 222
Q ss_pred ccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCccc
Q psy6053 259 KPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPGW 337 (614)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~gw 337 (614)
+....+..+. +. ..........+.|+.||..+|.+++.+.+ .+++++|+||++|||++..+-
T Consensus 135 ~~~~~~~~~~-----------~~---~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~--- 197 (346)
T d1oc2a_ 135 DLPGHGEGPG-----------EK---FTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE--- 197 (346)
T ss_dssp GSTTTTCSTT-----------SS---BCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT---
T ss_pred cccccccCcc-----------cc---cccCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc---
Confidence 2111100000 00 00000011237899999999999998876 699999999999999865321
Q ss_pred cCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHh
Q psy6053 338 TDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGK 417 (614)
Q Consensus 338 ~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~ 417 (614)
.....++.....|....+++++++.+++++++|+|++++.++.+.. .++.||++++ ++.++.++++.+.
T Consensus 198 ----~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~i~ 266 (346)
T d1oc2a_ 198 ----KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGR-----MGETYLIGAD--GEKNNKEVLELIL 266 (346)
T ss_dssp ----SHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCC-----TTCEEEECCS--CEEEHHHHHHHHH
T ss_pred ----chhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhcc-----cCcccccccc--ccccchHHHHHHH
Confidence 2233455566677777788999999999999999999998877654 6789999999 8999999999999
Q ss_pred hhcccccCCCCc-cccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcce
Q psy6053 418 SIVTTEVPLNGC-VWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQ 493 (614)
Q Consensus 418 ~~~g~~~p~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~~ 493 (614)
+.++.+.+.... ...|.... .+ . .-...+.+.+||+|++..+.+.+++ +++||..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~---~~-----------~--~d~~k~~~~LGw~P~~t~l~e~i~~---ti~w~~~n~ 324 (346)
T d1oc2a_ 267 EKMGQPKDAYDHVTDRAGHDL---RY-----------A--IDASKLRDELGWTPQFTDFSEGLEE---TIQWYTDNQ 324 (346)
T ss_dssp HHTTCCTTCSEEECCCTTCCC---BC-----------C--BCCHHHHHHHCCCCSCCCHHHHHHH---HHHHHHHTH
T ss_pred HHhCCCCcceEECCCCCCCCc---ee-----------e--eCHHHHHHHHCCCCcCCCHHHHHHH---HHHHHHHHH
Confidence 987875432211 11111110 00 0 0123456789999988778888887 777887553
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=9.3e-33 Score=289.74 Aligned_cols=305 Identities=15% Similarity=0.092 Sum_probs=221.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||||||++|+++|+++|++ |++++|.+..... . ......+..+|+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~---V~~~d~~~~~~~~---------------------~-~~~~~~~~~~D~~ 68 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHY---VIASDWKKNEHMT---------------------E-DMFCDEFHLVDLR 68 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCCSSSC---------------------G-GGTCSEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEeCCCccchh---------------------h-hcccCcEEEeech
Confidence 5789999999999999999999999987 8888876544211 1 3345678889998
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh----hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF----DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
+.+ ++..+.+++|+|||+|+.... ..........|+.||.+++++|++ .++++|||+||+.+++...
T Consensus 69 ~~~------~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~-~~vk~~i~~SS~~~~~~~~~~ 141 (363)
T d2c5aa1 69 VME------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI-NGIKRFFYASSACIYPEFKQL 141 (363)
T ss_dssp SHH------HHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHH-TTCSEEEEEEEGGGSCGGGSS
T ss_pred hHH------HHHHHhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHh-hCccccccccccccccccccc
Confidence 865 778888999999999987654 344566789999999999999999 5999999999998776543
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREP 333 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p 333 (614)
+.+|..... . ........+.|+.||..+|++++.+.+ .|++++++||+.|||+...+
T Consensus 142 ~~~~~~~~~----------------~------e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~ 199 (363)
T d2c5aa1 142 ETTNVSLKE----------------S------DAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 199 (363)
T ss_dssp SSSSCEECG----------------G------GGSSBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCC
T ss_pred ccccccccc----------------c------cCCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcc
Confidence 222221000 0 000001126899999999999998887 69999999999999997654
Q ss_pred CccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 334 LPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 334 ~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
...+ ..............+.....++++.+.+|++|++|++++++.++... .+++||++++ +++++.|++
T Consensus 200 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~------~~~~~ni~~~--~~~s~~~l~ 269 (363)
T d2c5aa1 200 KGGR--EKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD------FREPVNIGSD--EMVSMNEMA 269 (363)
T ss_dssp SSSC--CCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS------CCSCEEECCC--CCEEHHHHH
T ss_pred cccc--cccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCC------CCCeEEEecC--CcccHHHHH
Confidence 3221 11122233344455555567789999999999999999998887542 5679999999 899999999
Q ss_pred HHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 414 DIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 414 ~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
+.+.+.+|.+.|+.... .|... ... .. -.+.+.+.+||+|.. .+.+.+.+ +++||.
T Consensus 270 ~~i~~~~g~~~~i~~~~-~~~~~--~~~------------~~--d~ska~~~LGw~p~~-sleegi~~---ti~w~~ 325 (363)
T d2c5aa1 270 EMVLSFEEKKLPIHHIP-GPEGV--RGR------------NS--DNNLIKEKLGWAPNM-RLKEGLRI---TYFWIK 325 (363)
T ss_dssp HHHHHTTTCCCCEEEEC-CCCCC--SBC------------EE--CCHHHHHHHSCCCCC-CHHHHHHH---HHHHHH
T ss_pred HHHHHHhCCCCceEeCC-CCCCc--ccc------------cc--CHHHHHHHhCCCCCC-CHHHHHHH---HHHHHH
Confidence 99999988876654211 11110 000 00 124456778999987 78888887 556664
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-32 Score=286.10 Aligned_cols=327 Identities=13% Similarity=0.090 Sum_probs=221.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|+++|+. +|+++++.+.... . .. ..++++++.||+++.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~--~V~~ld~~~~~~~---------------~-----~~-~~~~~~~i~~Di~~~ 57 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS---------------R-----FL-NHPHFHFVEGDISIH 57 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGG---------------G-----GT-TCTTEEEEECCTTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCCCcchh---------------h-----hc-cCCCeEEEECccCCh
Confidence 68999999999999999999999853 4999988653211 0 01 346799999999986
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccChhHHH---HHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--ccc
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRFDEAL---KKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VLY 257 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~---~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i~ 257 (614)
. +..+.+.+++|+|||+||........ .....+|+.||.+++++|.+. +. +++|+||..+++... ..+
T Consensus 58 ~-----~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~-~~-~~~~~ss~~~~~~~~~~~~~ 130 (342)
T d2blla1 58 S-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-RK-RIIFPSTSEVYGMCSDKYFD 130 (342)
T ss_dssp S-----HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEECCGGGGBTCCCSSBC
T ss_pred H-----HHHHHHHhCCCccccccccccccccccCCccccccccccccccccccccc-cc-cccccccccccccccccccc
Confidence 5 23444677899999999987754433 467899999999999999994 54 557888886665443 333
Q ss_pred cccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCcc
Q psy6053 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLPG 336 (614)
Q Consensus 258 E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~g 336 (614)
|.....+.++. ..| -+.|+.||.++|+++..+.+ .|++++|+||+.++|+...+..+
T Consensus 131 ~~~~~~~~~~~----------------~~p------~~~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~ 188 (342)
T d2blla1 131 EDHSNLIVGPV----------------NKP------RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNA 188 (342)
T ss_dssp TTTCCCBCCCT----------------TCG------GGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTC
T ss_pred ccccccccccc----------------CCC------cchhhhcccchhhhhhhhhcccCceeEEeecccccccccccccc
Confidence 32111111000 001 16799999999999999887 69999999999999997665433
Q ss_pred ccCCCC-chHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 337 WTDNIN-GPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 337 w~d~~~-g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
-..... ....++..+..|....+++++++.++++||+|+|+++..++.+... ...+++||++++. +++|+.|+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~--~~~g~~~Nig~~~-~~~t~~~l~~~ 265 (342)
T d2blla1 189 ARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN--RCDGEIINIGNPE-NEASIEELGEM 265 (342)
T ss_dssp SBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGG--TTTTEEEEECCTT-SEEEHHHHHHH
T ss_pred ccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehhhccc--cCCCeEEEEeccc-chhHHHHHHHH
Confidence 222222 2345677788888888889999999999999999999999987542 1257899998762 45899999999
Q ss_pred HhhhcccccCCCCccccCCccccc-chhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhh
Q psy6053 416 GKSIVTTEVPLNGCVWYPGGSMKS-NRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYA 490 (614)
Q Consensus 416 ~~~~~g~~~p~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~ 490 (614)
+.+.+|.+.........+...... ..+......-..|..+ -...+.+.+||+|+. .+.+.+.+ +++||.
T Consensus 266 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~k~~~~lgw~P~~-sleegl~~---ti~~y~ 335 (342)
T d2blla1 266 LLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKP--SIRNAHRCLDWEPKI-DMQETIDE---TLDFFL 335 (342)
T ss_dssp HHHHHHTCTTGGGSCCCCCEEEC------------CCCCCB--CCHHHHHHHCCCCCC-CHHHHHHH---HHHHHH
T ss_pred HHHHhCCCccccccCcccccceecccccccccccccccccc--CHHHHHHHHCCCcCC-CHHHHHHH---HHHHHH
Confidence 999877653322111111111000 0000000000000000 124456788999986 67777777 566774
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-32 Score=283.00 Aligned_cols=315 Identities=17% Similarity=0.137 Sum_probs=219.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCH-HHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNA-RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~-~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|.|||||||||||++|+++|+++|++ |++++|...+... ..+.... ...+++++.+|+++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~---V~~~d~~~~~~~~~~~~~~~~----------------~~~~v~~~~~Dl~d 62 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYD---CVVADNLSNSTYDSVARLEVL----------------TKHHIPFYEVDLCD 62 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCSSCCTHHHHHHHHH----------------HTSCCCEEECCTTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCe---EEEEECCCCcchhHHHhHHhh----------------cccCCeEEEeecCC
Confidence 67999999999999999999999977 8888876554321 1112211 33578999999998
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK-- 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~-- 254 (614)
++ +++.+.+ ++|+|||+||...... .......+|+.||.+++++|++. ++++|||+||..+++...
T Consensus 63 ~~------~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~SS~~vyg~~~~~ 135 (347)
T d1z45a2 63 RK------GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGDATRF 135 (347)
T ss_dssp HH------HHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCCGGGS
T ss_pred HH------HHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeecceeeecCcccC
Confidence 65 7887776 7899999999876432 33467889999999999999994 999999999998877543
Q ss_pred ----ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEeecceee
Q psy6053 255 ----VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLRPSIII 327 (614)
Q Consensus 255 ----~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvRp~~I~ 327 (614)
+++|+....| .+.|+.||.++|+++..+.+ .+++++++||+.||
T Consensus 136 ~~~~~~~e~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~ 186 (347)
T d1z45a2 136 PNMIPIPEECPLGP-----------------------------TNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPI 186 (347)
T ss_dssp TTCCSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEE
T ss_pred CCCCccccccCCCC-----------------------------CChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceE
Confidence 2333321111 27899999999999988754 58999999999999
Q ss_pred cccCCCCccccCC--CCchHHHHHHHhcC--ceeeEeeC------CCccccceeHHHHHHHHHHHHHhhhhcC--CCCcc
Q psy6053 328 PVWREPLPGWTDN--INGPTGLLIGAGKG--VIRTMFCD------NTGYADFLPVDITINGIFVAIWAYLSQK--EHRQS 395 (614)
Q Consensus 328 g~~~~p~~gw~d~--~~g~~~~~~~~~~g--~~~~~~~~------~~~~~d~vpVDdva~aii~~~~~~~~~~--~~~~~ 395 (614)
|+...+.-|.... .......+.....+ ....+.|+ +....|++++.+++.+++.++....... ...++
T Consensus 187 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (347)
T d1z45a2 187 GAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCR 266 (347)
T ss_dssp CCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEE
T ss_pred eecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeeeeeeeecccccccccccccccccccccccc
Confidence 9876554332221 11223333333332 22233444 4456788888888999888877654311 12467
Q ss_pred EEEeccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHH--HHHHHHHHhCCChHHH
Q psy6053 396 IVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAY--FLDAIIFLSGNKPCLV 473 (614)
Q Consensus 396 vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~--~~d~~~~~~G~~P~~~ 473 (614)
+||++++ +++|+.|+++.+.+.+|.+.+.......|.. .+.. -.+.+.+.+||+|..
T Consensus 267 ~~Ni~~~--~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~------------------~~~~~~d~sk~~~~lGw~p~~- 325 (347)
T d1z45a2 267 EWNLGSG--KGSTVFEVYHAFCKASGIDLPYKVTGRRAGD------------------VLNLTAKPDRAKRELKWQTEL- 325 (347)
T ss_dssp EEEESCS--CCEEHHHHHHHHHHHHTCCCCC---------------------------CCCCCBCCHHHHHHTCCCCCC-
T ss_pred cceecCC--CcccHHHHHHHHHHHHCCCCceEeCCCCCCC------------------CCEeeECHHHHHHHHCCCCCC-
Confidence 9999998 8999999999999998987665421111111 0111 124567889999986
Q ss_pred HHHHHHHHHHhhhhhhhcceEEE
Q psy6053 474 KIQDRINKGFEVFEYYANNQWEF 496 (614)
Q Consensus 474 ~l~~ki~~~~~~~~~f~~~~w~f 496 (614)
.+.+.+.+ +++||..|.|.|
T Consensus 326 ~lee~i~~---ti~w~~~np~~~ 345 (347)
T d1z45a2 326 QVEDSCKD---LWKWTTENPFGY 345 (347)
T ss_dssp CHHHHHHH---HHHHHHHCTTCS
T ss_pred CHHHHHHH---HHHHHHhChhcC
Confidence 68888887 667887776544
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=7.3e-32 Score=281.01 Aligned_cols=315 Identities=17% Similarity=0.144 Sum_probs=219.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC-------cCHHHHHHHHHhChhhHHhhhhccccccCeEEEE
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG-------KNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~-------~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v 175 (614)
|+|||||||||+|++|+++|++.|++ |++++|.... ....++++.. ...++.++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~---V~~ld~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 63 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYL---PVVIDNFHNAFRGGGSLPESLRRVQEL----------------TGRSVEFE 63 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCC---EEEEECSSSSCBCSSSSBHHHHHHHHH----------------HTCCCEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCE---EEEEECCCccccccccchHHHHHHHHh----------------cCCCcEEE
Confidence 68999999999999999999999987 8888753221 1122223222 33679999
Q ss_pred eCCCCCCCCCCCHHHHHHHhcc--ccEEEEcccccChhHH---HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceec
Q psy6053 176 SGDAEADELAIKESDRQLLASE--VDIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCH 250 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~~~---~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~ 250 (614)
.+|+++.+ .+.++..+ +++|+|+||..+.... .....++|+.||.+++++|++. ++++|+|+||+.++
T Consensus 64 ~~Dl~d~~------~l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~-~v~~~i~~ss~~~~ 136 (346)
T d1ek6a_ 64 EMDILDQG------ALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVY 136 (346)
T ss_dssp ECCTTCHH------HHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGG
T ss_pred Eeeccccc------cccccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc-Ccccccccccceee
Confidence 99999865 67776654 5689999998764332 3467899999999999999994 99999999999776
Q ss_pred cCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--CCCCEEEeecceeec
Q psy6053 251 LQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--NGMPCLMLRPSIIIP 328 (614)
Q Consensus 251 ~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--~glp~~IvRp~~I~g 328 (614)
+...........+ .....++|+.+|..+|+.+.++.+ .+++.+++||+.+||
T Consensus 137 ~~~~~~~~~~~~~--------------------------~~~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G 190 (346)
T d1ek6a_ 137 GNPQYLPLDEAHP--------------------------TGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTG 190 (346)
T ss_dssp CSCSSSSBCTTSC--------------------------CCCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEEC
T ss_pred ecccccccccccc--------------------------ccccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceec
Confidence 6544211110000 011237899999999999998765 599999999999999
Q ss_pred ccCCCCccccCC-C-CchHHHHH--HHhcCceeeEee------CCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 329 VWREPLPGWTDN-I-NGPTGLLI--GAGKGVIRTMFC------DNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 329 ~~~~p~~gw~d~-~-~g~~~~~~--~~~~g~~~~~~~------~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+...+..|+... . ......+. ...++....+.+ ++.+.+|++||+|+|+++..++..... ...+++||
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~--~~~~~i~N 268 (346)
T d1ek6a_ 191 AHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE--QCGCRIYN 268 (346)
T ss_dssp CCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred cCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhcccccc--ccCceEEE
Confidence 976543332221 1 12222222 233444333333 466789999999999999888776543 13567999
Q ss_pred eccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHH
Q psy6053 399 LTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDR 478 (614)
Q Consensus 399 i~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~k 478 (614)
++++ +++++.|+++.+.+.+|.+.|.......|..... ..+ -.+.+.+.+||+|.+ .+.+.
T Consensus 269 i~~~--~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~--------------~~~--d~~k~~~~lgw~p~~-slee~ 329 (346)
T d1ek6a_ 269 LGTG--TGYSVLQMVQAMEKASGKKIPYKVVARREGDVAA--------------CYA--NPSLAQEELGWTAAL-GLDRM 329 (346)
T ss_dssp ECCS--CCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSE--------------ECB--CCHHHHHTTCCCCCC-CHHHH
T ss_pred eCCC--CcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCE--------------eeE--CHHHHHHHHCCCcCC-CHHHH
Confidence 9998 8999999999999999987665422222221100 000 124467789999987 68888
Q ss_pred HHHHHhhhhhhhcce
Q psy6053 479 INKGFEVFEYYANNQ 493 (614)
Q Consensus 479 i~~~~~~~~~f~~~~ 493 (614)
+.+ +++||..|.
T Consensus 330 I~~---~i~w~~~n~ 341 (346)
T d1ek6a_ 330 CED---LWRWQKQNP 341 (346)
T ss_dssp HHH---HHHHHHHCT
T ss_pred HHH---HHHHHHhCH
Confidence 887 566776553
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.98 E-value=8.7e-32 Score=277.06 Aligned_cols=297 Identities=14% Similarity=0.054 Sum_probs=216.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|++.|+++|++ |++++|...... .+|++++. ..++++++.+|++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~---V~~~~r~~~~~~-~~~l~~~~---------------~~~~~~~~~~Dl~d~ 61 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYR---VHGLVARRSSDT-RWRLRELG---------------IEGDIQYEDGDMADA 61 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSSCC-CHHHHHTT---------------CGGGEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE---EEEEECCCCccc-HHHHHHhc---------------ccCCcEEEEccccCh
Confidence 68999999999999999999999987 899999765432 34554431 346799999999997
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhHH---HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~---~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
. .+..... ..++++|+|+....... ....+..|+.||.+++++|++.+..++|++.||+.+++... .
T Consensus 62 ~------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~ 135 (321)
T d1rpna_ 62 C------SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAER 135 (321)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSS
T ss_pred H------HhhhhhccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCC
Confidence 6 6666555 46799999887765433 45678999999999999999975566899999987665443 5
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCC
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPL 334 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~ 334 (614)
.+|+.+..|. +.|+.||..+|+++..+.. .+++++++||+++||+...+-
T Consensus 136 ~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~ 186 (321)
T d1rpna_ 136 QDENTPFYPR-----------------------------SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIE 186 (321)
T ss_dssp BCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTT
T ss_pred CCCCCCcccc-----------------------------ChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCcccc
Confidence 5565443332 7899999999999999887 699999999999999864320
Q ss_pred ccccCCCCchHHHHHHHhcCc-eeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 335 PGWTDNINGPTGLLIGAGKGV-IRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 335 ~gw~d~~~g~~~~~~~~~~g~-~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
+.. .....++.....|. .....+++++.+|++||+|+|++++.++.++ ..+.||++++ ++.++.+++
T Consensus 187 --~~~--~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~------~~~~~ni~~~--~~~s~~~~~ 254 (321)
T d1rpna_ 187 --FVT--RKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD------KADDYVVATG--VTTTVRDMC 254 (321)
T ss_dssp --SHH--HHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSS------SCCCEEECCS--CEEEHHHHH
T ss_pred --ccH--HHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcC------CcCCceeccc--ccceehhhh
Confidence 000 01223444544444 3445789999999999999999999998764 4578999999 899999999
Q ss_pred HHHhhhcccccCCCC----ccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy6053 414 DIGKSIVTTEVPLNG----CVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKG 482 (614)
Q Consensus 414 ~~~~~~~g~~~p~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~ 482 (614)
+.+.+..|.+.+... ....|.... .+ .. -.+.+.+++||+|+. .+.+.+.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~rp~~~~---~~-----------~~--d~~k~~k~lG~~P~~-~l~e~i~~t 310 (321)
T d1rpna_ 255 QIAFEHVGLDYRDFLKIDPAFFRPAEVD---VL-----------LG--NPAKAQRVLGWKPRT-SLDELIRMM 310 (321)
T ss_dssp HHHHHTTTCCGGGTEEECGGGCCSSCCC---BC-----------CB--CTHHHHHHHCCCCCS-CHHHHHHHH
T ss_pred HHHHHHhCCCccceeecCCCCCCCCccC---Cc-----------cC--CHHHHHHHHCCCcCC-CHHHHHHHH
Confidence 999998787543221 111121100 00 00 113456788999986 677888873
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-31 Score=277.04 Aligned_cols=263 Identities=13% Similarity=0.026 Sum_probs=191.1
Q ss_pred cEE-EEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 103 KTL-FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 103 ~~V-LITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
|+| ||||||||||++|+++|+++|++ |++++|..+.... .|++.+... .... ...+++++.||+++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~---V~~i~r~~~~~~~-~~~~~~~~~--------~~~~-~~~~~~~~~~Dl~d 67 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYE---VHGIVRRSSSFNT-GRIEHLYKN--------PQAH-IEGNMKLHYGDLTD 67 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSSCCC-TTTGGGC------------------CEEEEECCTTC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCE---EEEEECCCcccch-hhHHHHhhc--------hhhh-ccCCcEEEEeecCC
Confidence 567 99999999999999999999987 8999996542211 112111100 0011 34679999999998
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcC--CCceEEEEeCceeccCC-
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMK--HLELFVHISTAYCHLQE- 253 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~--~~k~~V~vST~~~~~~~- 253 (614)
++ .+..+.. ++++|+|+||...... +.....++|+.||.+++++|+++. +.++|||+||+.+++..
T Consensus 68 ~~------~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~ 141 (347)
T d1t2aa_ 68 ST------CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ 141 (347)
T ss_dssp HH------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS
T ss_pred ch------hhHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCC
Confidence 76 7777775 5679999999876543 334567999999999999999852 33589999999887653
Q ss_pred -cccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 254 -KVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 254 -~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
.+++|+....|. +.|+.||..+|+++..+.+ .+++++++||+.|||+..
T Consensus 142 ~~~~~E~~~~~P~-----------------------------~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~ 192 (347)
T d1t2aa_ 142 EIPQKETTPFYPR-----------------------------SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 192 (347)
T ss_dssp SSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCC
Confidence 366776443332 7899999999999998766 799999999999999865
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
.+... .. .....++.....+......+++++.+++++|+|++++++.++.+. ....|+++.. ...++++
T Consensus 193 ~~~~~--~~-~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~------~~~~~~~~~~--~~~~~~~ 261 (347)
T d1t2aa_ 193 GANFV--TR-KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND------EPEDFVIATG--EVHSVRE 261 (347)
T ss_dssp CTTSH--HH-HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSS------SCCCEEECCS--CCEEHHH
T ss_pred CCCcc--cc-ccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhhcC------CCccceeccc--cccccch
Confidence 43110 00 001122333334444566789999999999999999999998764 3457888887 7889999
Q ss_pred HHHHHhhhccccc
Q psy6053 412 IIDIGKSIVTTEV 424 (614)
Q Consensus 412 ~~~~~~~~~g~~~ 424 (614)
........++...
T Consensus 262 ~~~~~~~~~~~~~ 274 (347)
T d1t2aa_ 262 FVEKSFLHIGKTI 274 (347)
T ss_dssp HHHHHHHHTTCCE
T ss_pred hhhhhhhhhccee
Confidence 9998888777754
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.97 E-value=5.4e-31 Score=279.32 Aligned_cols=276 Identities=15% Similarity=0.065 Sum_probs=187.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEE---cc-----------CCCcCHHHHHHHHHhChhhHHhhhhcccc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILM---RQ-----------KKGKNARQRIEELFASPLFNLLKSVHGQK 167 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~Lv---R~-----------~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~ 167 (614)
||+|||||||||||++|+++|++.|++ |++++ |. .......+++..... .
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~---V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~- 64 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYE---VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA------------L- 64 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHH------------H-
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCE---EEEEecCCcccccccccccccccccchHHHHHHHHh------------h-
Confidence 799999999999999999999999987 77764 21 111222333322100 0
Q ss_pred ccCeEEEEeCCCCCCCCCCCHHHHHHHhcc--ccEEEEcccccChhH------HHHHHHHHhHHHHHHHHHHHHHcCCCc
Q psy6053 168 IIDKVLPISGDAEADELAIKESDRQLLASE--VDIMIHGAATIRFDE------ALKKAVLLNTRGTKMMLSLAKEMKHLE 239 (614)
Q Consensus 168 ~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~~------~~~~~~~~Nv~gt~~ll~la~~~~~~k 239 (614)
...+++++.||+++.+ .++.++++ +|+|||+||...... .....+.+||.||.+++++|++.+..+
T Consensus 65 ~~~~i~~~~~Dl~d~~------~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~ 138 (393)
T d1i24a_ 65 TGKSIELYVGDICDFE------FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEEC 138 (393)
T ss_dssp HCCCCEEEESCTTSHH------HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCCcEEEEccCCCHH------HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhcccc
Confidence 3357999999999976 78888874 599999999765432 234568999999999999999975555
Q ss_pred eEEEEeCceeccCCc-ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCC
Q psy6053 240 LFVHISTAYCHLQEK-VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMP 317 (614)
Q Consensus 240 ~~V~vST~~~~~~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp 317 (614)
.+++.||..+++... +..|...+... ..... +-.......+.|+.||..+|.++..+.+ .+++
T Consensus 139 ~~i~~ss~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~ 203 (393)
T d1i24a_ 139 HLVKLGTMGEYGTPNIDIEEGYITITH--------------NGRTD-TLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIR 203 (393)
T ss_dssp EEEEECCGGGGCCCSSCBCSSEEEEEE--------------TTEEE-EEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred ceeeccccccccccccccccccccccc--------------ccccc-ccccccccccHHHHHhhhhccccccccccccee
Confidence 677888776654332 22221110000 00000 0000011126899999999999998877 7999
Q ss_pred EEEeecceeecccCCCCc--ccc------CCCCc--hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhh
Q psy6053 318 CLMLRPSIIIPVWREPLP--GWT------DNING--PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYL 387 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~--gw~------d~~~g--~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~ 387 (614)
++++||++|||+...+.. ++. +..++ ...++.....|....++|++.+.+|++||+|+|+++..++.+..
T Consensus 204 ~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~ 283 (393)
T d1i24a_ 204 ATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPA 283 (393)
T ss_dssp EEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCC
T ss_pred eeecccccccCCCccccccccccccccccccccccchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhc
Confidence 999999999999865421 110 01111 23456667788877888999999999999999999999997654
Q ss_pred hcCCCCccEEEeccCCcccccHHHHHHHHhhh
Q psy6053 388 SQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 388 ~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
..+.|++.++..+++++.|+++.+.+.
T Consensus 284 -----~~g~~~~~~~~~~~~si~el~~~i~~~ 310 (393)
T d1i24a_ 284 -----KAGEFRVFNQFTEQFSVNELASLVTKA 310 (393)
T ss_dssp -----CTTCEEEEEECSEEEEHHHHHHHHHHH
T ss_pred -----ccceeeeecCCCCeeEHHHHHHHHHHH
Confidence 233343332222678999999998886
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.97 E-value=2e-30 Score=274.03 Aligned_cols=326 Identities=14% Similarity=0.147 Sum_probs=215.9
Q ss_pred CcEEEEecccccccHHHHHHHHhh-CCCccEEEEEEc---cCCCc---CHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMR---QKKGK---NARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR---~~~~~---~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
+|+|||||||||||++|+++||+. |++ |+++++ +.... ...+++...+. ......+.....++.+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~---V~~~D~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 73 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHS---VVIVDSLVGTHGKSDHVETRENVARKLQ-----QSDGPKPPWADRYAAL 73 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCE---EEEEECCTTTTTCCTTSCCHHHHHHHHH-----HSCSSCCTTTTCCCEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCE---EEEEecCCcccccchhhhhhhhHHHHhh-----hhccccccccccceEE
Confidence 689999999999999999999975 554 888864 21111 11122211111 1111111103357889
Q ss_pred EeCCCCCCCCCCCHHHHHHHhc---cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCce
Q psy6053 175 ISGDAEADELAIKESDRQLLAS---EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAY 248 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~ 248 (614)
+.||+++++ .++++++ ++|+|||+||...... ......++|+.||.+++++|++ .++++++++||..
T Consensus 74 ~~~Di~d~~------~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~-~~~~~~~~~~s~~ 146 (383)
T d1gy8a_ 74 EVGDVRNED------FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLL-HKCDKIIFSSSAA 146 (383)
T ss_dssp EESCTTCHH------HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEEEEGG
T ss_pred EECcccCHH------Hhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhc-cCCcccccccccc
Confidence 999999976 6777765 5799999999876543 2345688999999999999999 5899999999987
Q ss_pred eccCCcc---------cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCE
Q psy6053 249 CHLQEKV---------LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPC 318 (614)
Q Consensus 249 ~~~~~~~---------i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~ 318 (614)
+++.... +.|+....| .+.|+.||..+|+++..+.+ .|+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~e~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~gl~~ 197 (383)
T d1gy8a_ 147 IFGNPTMGSVSTNAEPIDINAKKSP-----------------------------ESPYGESKLIAERMIRDCAEAYGIKG 197 (383)
T ss_dssp GTBSCCC-----CCCCBCTTSCCBC-----------------------------SSHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred cccccccccccccccccccccCCCC-----------------------------CCHHHhhHhHHHHHHHHHHHHhCCCE
Confidence 6654431 222211111 27899999999999999887 79999
Q ss_pred EEeecceeecccCCCC-ccccCCCCchHHHH-H----HH------------hcCceeeEee------CCCccccceeHHH
Q psy6053 319 LMLRPSIIIPVWREPL-PGWTDNINGPTGLL-I----GA------------GKGVIRTMFC------DNTGYADFLPVDI 374 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~-~gw~d~~~g~~~~~-~----~~------------~~g~~~~~~~------~~~~~~d~vpVDd 374 (614)
+++||+.|||+...+. ..+.....+....+ . .. ..+....+.+ ++.+.+|++||+|
T Consensus 198 ~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D 277 (383)
T d1gy8a_ 198 ICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCD 277 (383)
T ss_dssp EEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHH
T ss_pred EEEecceeeccCccccccccccccchhHHHHHHHHHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHH
Confidence 9999999999987542 12222212211111 1 11 1122222333 4778899999999
Q ss_pred HHHHHHHHHHhhhhcC----CCCccEEEeccCCcccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHH
Q psy6053 375 TINGIFVAIWAYLSQK----EHRQSIVHLTSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIF 450 (614)
Q Consensus 375 va~aii~~~~~~~~~~----~~~~~vyni~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~ 450 (614)
+|++++.++....... ....++||++++ +++++.|+++.+.+.+|.+.+.......|.... ..
T Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~--~~~s~~el~~~i~~~~~~~~~~~~~~~~~~d~~--~~--------- 344 (383)
T d1gy8a_ 278 LASAHILALDYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGHPIPVRECGRREGDPA--YL--------- 344 (383)
T ss_dssp HHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCCCCCEEEECCCTTCCS--EE---------
T ss_pred HHHHHHHHHhhhccccccccccCccEEEeCCC--CceeHHHHHHHHHHHhCCCCceEECCCCCCCcC--Ee---------
Confidence 9999999987654311 125679999999 899999999999999888766543222222100 00
Q ss_pred HhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhhhhcc
Q psy6053 451 FHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANN 492 (614)
Q Consensus 451 ~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~~~f~~~ 492 (614)
.. -.+.+.+.+||+|++ .+.+.+.+. .++|+..+
T Consensus 345 ---~~--d~~k~~k~LGw~P~~-~l~e~i~~t--~~~w~~~~ 378 (383)
T d1gy8a_ 345 ---VA--ASDKAREVLGWKPKY-DTLEAIMET--SWKFQRTH 378 (383)
T ss_dssp ---CB--CCHHHHHHTCCCCSC-CSHHHHHHH--HHHHHHTC
T ss_pred ---ee--CHHHHHHHHCCccCC-CHHHHHHHH--HHHHHHhC
Confidence 00 124567789999987 577777662 35666543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.97 E-value=9.9e-31 Score=272.24 Aligned_cols=272 Identities=14% Similarity=0.112 Sum_probs=194.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+||+|||||||||||++|+++|+++|++ |++++|+.+. ...+++.... +. .......+.||++
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~---V~~~vR~~~~---~~~~~~~~~~----------~~-~~~~~~~~~~Dl~ 72 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYK---VRGTARSASK---LANLQKRWDA----------KY-PGRFETAVVEDML 72 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSHHH---HHHHHHHHHH----------HS-TTTEEEEECSCTT
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEeCCchh---HHHHHHhhhc----------cc-cccccEEEecccc
Confidence 4899999999999999999999999977 8899996422 2223222111 11 2345567889999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc------
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK------ 254 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~------ 254 (614)
++. .+..++.++|+|+|+|+...+..+.......|+.||.+++++|.+.+++++|||+||..+.....
T Consensus 73 ~~~------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~ 146 (342)
T d1y1pa1 73 KQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGI 146 (342)
T ss_dssp STT------TTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCC
T ss_pred chh------hhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCc
Confidence 987 67788899999999999998887778888999999999999999977899999999985433222
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CCCCEEEeecceeecccC
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~glp~~IvRp~~I~g~~~ 331 (614)
..+|+.+ +...+.. .....++.. ....+.|+.||..+|++++.+.+ .++.++++||++|+|+..
T Consensus 147 ~~~e~~~----~~~~~~~-~~~~~e~~~--------~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~ 213 (342)
T d1y1pa1 147 YLDEKSW----NLESIDK-AKTLPESDP--------QKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIF 213 (342)
T ss_dssp EECTTCC----CHHHHHH-HHHSCTTST--------THHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCS
T ss_pred ccccccc----ccccccc-cccccccCC--------CCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCC
Confidence 2222211 1111111 111111110 01125799999999999988765 368899999999999865
Q ss_pred CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQE 411 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e 411 (614)
.|.. .......++..+.+|..... ..+....++++|+|+|++++.++.+.. ..+.|+++++ ++++|+|
T Consensus 214 ~~~~----~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~v~v~Dva~~~i~~l~~~~-----~~g~~~~~~~--~~~t~~e 281 (342)
T d1y1pa1 214 DPET----QSGSTSGWMMSLFNGEVSPA-LALMPPQYYVSAVDIGLLHLGCLVLPQ-----IERRRVYGTA--GTFDWNT 281 (342)
T ss_dssp CTTT----CCCHHHHHHHHHHTTCCCHH-HHTCCSEEEEEHHHHHHHHHHHHHCTT-----CCSCEEEECC--EEECHHH
T ss_pred Cccc----cccchHHHHHHHHcCCcCcc-cCCccceeeeeHHHHHHHHHHhhcCcc-----ccceEEEEcC--CceEHHH
Confidence 4422 22334566777777765432 245566899999999999999887754 3455667777 7899999
Q ss_pred HHHHHhhhc
Q psy6053 412 IIDIGKSIV 420 (614)
Q Consensus 412 ~~~~~~~~~ 420 (614)
+++.+.+.+
T Consensus 282 ia~~i~k~~ 290 (342)
T d1y1pa1 282 VLATFRKLY 290 (342)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 999998874
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.6e-30 Score=266.91 Aligned_cols=296 Identities=11% Similarity=0.071 Sum_probs=205.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||||++|+++|++.|+. |+++.+.. ..|+.+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~---vi~~~~~~------------------------------------~~~~~~ 42 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDV---ELVLRTRD------------------------------------ELNLLD 42 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTE---EEECCCTT------------------------------------TCCTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCE---EEEecCch------------------------------------hccccC
Confidence 478999999999999999999999875 44333211 135555
Q ss_pred CCCCCCHHHHHHHhc--cccEEEEcccccChh----HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc-
Q psy6053 182 DELAIKESDRQLLAS--EVDIMIHGAATIRFD----EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK- 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~----~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~- 254 (614)
.. .+..+++ ++|.|+|+|+.+... .+..+.++.|+.||.+++++|++. ++++|||+||..+++...
T Consensus 43 ~~------~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~~~i~~SS~~vyg~~~~ 115 (315)
T d1e6ua_ 43 SR------AVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKLAK 115 (315)
T ss_dssp HH------HHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTTCC
T ss_pred HH------HHHHHHhhcCCCEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECCceEcCCCCC
Confidence 43 5666654 589999999876532 334567889999999999999994 999999999998887543
Q ss_pred -ccccccCCC-CCChhHHHHHHhhcchhHHhhhhhhhcCCCC-CchhhhHHHHHHHHHHHhh-CCCCEEEeecceeeccc
Q psy6053 255 -VLYEKPYPP-PTDPHKLIERVEMMSEDTVEKRAKEFLGEFP-NSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVW 330 (614)
Q Consensus 255 -~i~E~~~~~-p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~p-n~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~ 330 (614)
+++|+.... +. .+| +.|+.||..+|+++..+.+ .|++++|+||++|||++
T Consensus 116 ~~~~E~~~~~~~~--------------------------~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~ 169 (315)
T d1e6ua_ 116 QPMAESELLQGTL--------------------------EPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPH 169 (315)
T ss_dssp SSBCGGGTTSSCC--------------------------CGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTT
T ss_pred CCccCCccccCCC--------------------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCC
Confidence 456642211 11 111 3699999999999999877 69999999999999987
Q ss_pred CCCCccccC--CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhc----CCCCccEEEeccCCc
Q psy6053 331 REPLPGWTD--NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQ----KEHRQSIVHLTSSQE 404 (614)
Q Consensus 331 ~~p~~gw~d--~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~----~~~~~~vyni~~~~~ 404 (614)
..+...... ..............+......+++...+++++++|+++++..+....... .......+|++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (315)
T d1e6ua_ 170 DNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG-- 247 (315)
T ss_dssp CCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--
T ss_pred CCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhccccccccccccccccccCCC--
Confidence 643211100 00111123344555666677888999999999999999999887654321 1134678999988
Q ss_pred ccccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy6053 405 WQVSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFE 484 (614)
Q Consensus 405 ~~it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~ 484 (614)
.+.+..++.+.+.+.+|.+..+......|..... . .+ -.+.+ +.+||+|+. .+.+.+.+
T Consensus 248 ~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~--~------------~~--d~sk~-k~Lg~~p~~-~l~e~i~~--- 306 (315)
T d1e6ua_ 248 VDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPR--K------------LL--DVTRL-HQLGWYHEI-SLEAGLAS--- 306 (315)
T ss_dssp CCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSB--C------------CB--CCHHH-HHTTCCCCC-CHHHHHHH---
T ss_pred cchHHHHHHHHHHHHhCCCcceEECCCCCCCCce--e------------cc--CHHHH-HHcCCCCCC-CHHHHHHH---
Confidence 8899999999999998887544322223322110 0 00 01223 458999987 67788877
Q ss_pred hhhhhhcc
Q psy6053 485 VFEYYANN 492 (614)
Q Consensus 485 ~~~~f~~~ 492 (614)
+++||..|
T Consensus 307 ti~w~~~N 314 (315)
T d1e6ua_ 307 TYQWFLEN 314 (315)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 67787654
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.97 E-value=4.7e-29 Score=258.27 Aligned_cols=306 Identities=13% Similarity=0.041 Sum_probs=210.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|++||||||||||+||++.|++.|++ |++++|..+... .+|++.+.. ...+.....++++.+|+++.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~---V~~~~r~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~Di~~~ 68 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYE---VHGLIRRSSNFN-TQRINHIYI---------DPHNVNKALMKLHYADLTDA 68 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSSCC-CTTTTTTC-----------------CCEEEEECCTTCH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCE---EEEEECCCcccc-hhhhhhhhh---------hhhhccccceEEEEccccCH
Confidence 78999999999999999999999987 899999654211 111111100 00000235688999999986
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhHH---HHHHHHHhHHHHHHHHHHHHHc----CCCceEEEEeCceeccCC
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEM----KHLELFVHISTAYCHLQE 253 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~~---~~~~~~~Nv~gt~~ll~la~~~----~~~k~~V~vST~~~~~~~ 253 (614)
. .+...++ ++|+|||+||....... .......|+.|+.+++++|++. ....++++.||+++++..
T Consensus 69 ~------~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~ 142 (339)
T d1n7ha_ 69 S------SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST 142 (339)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS
T ss_pred H------HHHHHHhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC
Confidence 5 6666664 57999999998776533 3467899999999999999763 134468888888776655
Q ss_pred c-ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccC
Q psy6053 254 K-VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWR 331 (614)
Q Consensus 254 ~-~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~ 331 (614)
. .++|+.+..|. +.|+.||..+|+++..+.+ .+++++++||++|||+..
T Consensus 143 ~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~ 193 (339)
T d1n7ha_ 143 PPPQSETTPFHPR-----------------------------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR 193 (339)
T ss_dssp CSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCCCCCCCCc-----------------------------chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCC
Confidence 4 56676443332 7899999999999999887 699999999999999865
Q ss_pred CCCccccCCCCchHHHHHHHhc-CceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHH
Q psy6053 332 EPLPGWTDNINGPTGLLIGAGK-GVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQ 410 (614)
Q Consensus 332 ~p~~gw~d~~~g~~~~~~~~~~-g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~ 410 (614)
.+ ++.. ......+..... +....+.+++.+.+|+++|+|+|+++..++.+. ....++++.+ .+.++.
T Consensus 194 ~~--~~~~--~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~------~~~~~~~~~~--~~~s~~ 261 (339)
T d1n7ha_ 194 GE--NFVT--RKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQE------KPDDYVVATE--EGHTVE 261 (339)
T ss_dssp CT--TSHH--HHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSS------SCCEEEECCS--CEEEHH
T ss_pred CC--CCCc--chhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcC------CCCccccccc--cccccc
Confidence 32 1000 001112222222 334456688999999999999999999988764 3345666666 789999
Q ss_pred HHHHHHhhhcccccCCC----CccccCCcccccchhHHHHHHHHHhhhHHH--HHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy6053 411 EIIDIGKSIVTTEVPLN----GCVWYPGGSMKSNRLLHQICVIFFHMIPAY--FLDAIIFLSGNKPCLVKIQDRINKGFE 484 (614)
Q Consensus 411 e~~~~~~~~~g~~~p~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~--~~d~~~~~~G~~P~~~~l~~ki~~~~~ 484 (614)
++++.+.+.+|.+.+.. .....|... +.+ -.+.+.+.+||+|+. .+.+.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~------------------~~~~~d~~Kak~~LGw~P~~-~le~gi~~--- 319 (339)
T d1n7ha_ 262 EFLDVSFGYLGLNWKDYVEIDQRYFRPAEV------------------DNLQGDASKAKEVLGWKPQV-GFEKLVKM--- 319 (339)
T ss_dssp HHHHHHHHHTTCCGGGTEEECGGGSCSSCC------------------CBCCBCCHHHHHHHCCCCCS-CHHHHHHH---
T ss_pred hhhhhhhhhhhcccCceeeeccCCCCCCCC------------------CeeeECHHHHHHHHCCCcCC-CHHHHHHH---
Confidence 99999999888754321 111112110 011 124567889999986 78888887
Q ss_pred hhhhhh
Q psy6053 485 VFEYYA 490 (614)
Q Consensus 485 ~~~~f~ 490 (614)
+++||.
T Consensus 320 ti~~~~ 325 (339)
T d1n7ha_ 320 MVDEDL 325 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455554
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.96 E-value=4.1e-29 Score=257.91 Aligned_cols=318 Identities=15% Similarity=0.154 Sum_probs=214.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|||||||||||++|+++|+++|++ |++++|-.+.. ..+++..+. ...+++++.||+++.+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~---V~~id~~~~~~-~~~~~~~~~---------------~~~~~~~i~~Di~~~~ 62 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGID---LIVFDNLSRKG-ATDNLHWLS---------------SLGNFEFVHGDIRNKN 62 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE---EEEEECCCSTT-HHHHHHHHH---------------TTCCCEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCE---EEEEECCCccc-chhHHHHhh---------------ccCCcEEEEcccCCHH
Confidence 6999999999999999999999887 88887644332 234444331 3367899999999866
Q ss_pred CCCCHHHHHHHhcc--ccEEEEcccccChhHH---HHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee-ccCCc--c
Q psy6053 184 LAIKESDRQLLASE--VDIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC-HLQEK--V 255 (614)
Q Consensus 184 lGLs~~~~~~l~~~--vd~ViH~AA~v~~~~~---~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~-~~~~~--~ 255 (614)
.+.+++++ +|+|||+||.+..... .....++||.||.+|+++|.+. +++++++.||..+ .+... +
T Consensus 63 ------~l~~~~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS~~~~~~~~~~~~ 135 (338)
T d1orra_ 63 ------DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYK 135 (338)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSC
T ss_pred ------HHHHHHHhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccccccccccccccc
Confidence 78888875 5999999999876543 3567899999999999999996 6666666665533 32221 1
Q ss_pred cccc--cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCC
Q psy6053 256 LYEK--PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWRE 332 (614)
Q Consensus 256 i~E~--~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~ 332 (614)
..+. ..+....+.. .........-+.|+.+|..+|.++..... .+....++|++.++++...
T Consensus 136 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
T d1orra_ 136 YNETETRYTCVDKPNG---------------YDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQF 200 (338)
T ss_dssp EEECSSCEEETTCTTC---------------BCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCC
T ss_pred cccccccccccccccC---------------cccCCccccccccccccchhhhhhhhhhhccCcccccccccceeecccc
Confidence 1111 0000000000 00000001226799999999999988777 7999999999999987653
Q ss_pred CCccccCCCCch-HHHHHHH-----hcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCccc
Q psy6053 333 PLPGWTDNINGP-TGLLIGA-----GKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQ 406 (614)
Q Consensus 333 p~~gw~d~~~g~-~~~~~~~-----~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~ 406 (614)
+.. ..+. ..++..+ ..+....+++++...+|+++|+|+|++++.++.+... ..+++||+..+..++
T Consensus 201 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~~~---~~~~~~~i~~~~~~~ 272 (338)
T d1orra_ 201 ATY-----DQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSK---IRGNAFNIGGTIVNS 272 (338)
T ss_dssp CBT-----TBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHH---HTTCEEEESSCGGGE
T ss_pred ccc-----cccccchhhHHHHHHHhccCCceEEeCCCceeEeeecccchhhHHHHHHhcccc---ccCcccccccccccc
Confidence 321 1122 2233222 2344556788999999999999999999999876542 267899997766688
Q ss_pred ccHHHHHHHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhh
Q psy6053 407 VSWQEIIDIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVF 486 (614)
Q Consensus 407 it~~e~~~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~ 486 (614)
+++.|+++.+.+..|.+.++......|... .. +.+ -.+.+.+.+||+|++ .+.+.+.+ ++
T Consensus 273 ~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~---~~-----------~~~--d~~k~~~~Lg~~p~~-sl~e~i~~---ti 332 (338)
T d1orra_ 273 LSLLELFKLLEDYCNIDMRFTNLPVRESDQ---RV-----------FVA--DIKKITNAIDWSPKV-SAKDGVQK---MY 332 (338)
T ss_dssp EEHHHHHHHHHHHHTCCCCEEEECCCSSCC---SE-----------ECB--CCHHHHHHHCCCCCS-CHHHHHHH---HH
T ss_pred ccHHHHHHHHHHHHCCCceeEeCCCCCCCc---Ce-----------eeE--CHHHHHHHHCCCcCC-CHHHHHHH---HH
Confidence 999999999999988765543221122110 00 000 134567788999987 78888888 55
Q ss_pred hhhh
Q psy6053 487 EYYA 490 (614)
Q Consensus 487 ~~f~ 490 (614)
+||.
T Consensus 333 ~W~k 336 (338)
T d1orra_ 333 DWTS 336 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.96 E-value=2.4e-28 Score=254.64 Aligned_cols=309 Identities=13% Similarity=0.080 Sum_probs=213.6
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+||++|+|||||||||||++|+++|++.|++ |++++|.+...... ++.. . ..++++++.|
T Consensus 4 ~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~---V~~~~r~~~~~~~~-----------~~~~-----~-~~~~i~~~~~ 63 (356)
T d1rkxa_ 4 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGAT---VKGYSLTAPTVPSL-----------FETA-----R-VADGMQSEIG 63 (356)
T ss_dssp HHHTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCSSSSCH-----------HHHT-----T-TTTTSEEEEC
T ss_pred hhhCCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCCCccHHH-----------Hhhh-----h-cccCCeEEEe
Confidence 5799999999999999999999999999986 89999987543211 1111 1 3467999999
Q ss_pred CCCCCCCCCCHHHHHHHhc--cccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccC
Q psy6053 178 DAEADELAIKESDRQLLAS--EVDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQ 252 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~ 252 (614)
|+++++ .+.++.+ .+|+|+|+||..... ........+|+.||.+++++|++.+..+.+++.||..+...
T Consensus 64 Dl~d~~------~l~~~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~ 137 (356)
T d1rkxa_ 64 DIRDQN------KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDN 137 (356)
T ss_dssp CTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCC
T ss_pred eccChH------hhhhhhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccc
Confidence 999876 6777766 569999999987543 23456789999999999999999766666777776655443
Q ss_pred Cc---ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----------CCCCEE
Q psy6053 253 EK---VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----------NGMPCL 319 (614)
Q Consensus 253 ~~---~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----------~glp~~ 319 (614)
.. +.+|+....| .+.|+.+|..+|..+..+.. .+++++
T Consensus 138 ~~~~~~~~~~~~~~p-----------------------------~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 188 (356)
T d1rkxa_ 138 KEWIWGYRENEAMGG-----------------------------YDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVA 188 (356)
T ss_dssp CCSSSCBCTTSCBCC-----------------------------SSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEE
T ss_pred cccccccccccccCC-----------------------------CCccccccccchhhhhHHhhhcccchhccccCceEE
Confidence 33 2333321112 26899999999988876543 368899
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
+.||+.|||+.+.+. . ..+..++.... +....+.+.+++.+++++|+|+|.+++.++..........+...+.
T Consensus 189 ~~r~~~vyGp~~~~~-----~-~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (356)
T d1rkxa_ 189 TVRAGNVIGGGDWAL-----D-RIVPDILRAFE-QSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNF 261 (356)
T ss_dssp EEECCCEECTTCCCS-----S-CHHHHHHHHHH-TTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEEC
T ss_pred eccCCCeeCCCcchh-----h-HHHHHHHHHHh-CCCceEEeeccccccccccccccchhhhhhhhhccccccccccccc
Confidence 999999999875321 1 11223444443 4444567889999999999999999999888765421112344555
Q ss_pred ccCCcccccHHHHHHHHhhhcccccCCCCcccc-CCcccccchhHHHHHHHHHhhhHHH--HHHHHHHHhCCChHHHHHH
Q psy6053 400 TSSQEWQVSWQEIIDIGKSIVTTEVPLNGCVWY-PGGSMKSNRLLHQICVIFFHMIPAY--FLDAIIFLSGNKPCLVKIQ 476 (614)
Q Consensus 400 ~~~~~~~it~~e~~~~~~~~~g~~~p~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~pa~--~~d~~~~~~G~~P~~~~l~ 476 (614)
..+..+.+++.++.+.+.+.+|...+....... |.. .+.+ -.+.+.+.+||+|+. .+.
T Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------------~~~~~~d~skak~~LGw~P~~-~l~ 322 (356)
T d1rkxa_ 262 GPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHE------------------AHYLKLDCSKAKMQLGWHPRW-NLN 322 (356)
T ss_dssp CCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------C------------------CCCCCBCCHHHHHHHCCCCCC-CHH
T ss_pred ccccccccccchhhhhhHHHhCCCccEEEcCCCCCCC------------------cCeeeEcHHHHHHHHCCCcCC-CHH
Confidence 444447899999999999998876443321111 110 0001 124567789999987 677
Q ss_pred HHHHHHHhhhhhhh
Q psy6053 477 DRINKGFEVFEYYA 490 (614)
Q Consensus 477 ~ki~~~~~~~~~f~ 490 (614)
+.+.+ +++||.
T Consensus 323 egi~~---ti~wyk 333 (356)
T d1rkxa_ 323 TTLEY---IVGWHK 333 (356)
T ss_dssp HHHHH---HHHHHH
T ss_pred HHHHH---HHHHHH
Confidence 88887 455553
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.4e-26 Score=225.63 Aligned_cols=210 Identities=20% Similarity=0.166 Sum_probs=162.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+|||||||||+|++|+++|+++|. +.+|++++|.+..... . ...++....+|+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~-~~~v~~~~R~~~~~~~---------------------~-~~~~i~~~~~D~ 68 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGL-FSKVTLIGRRKLTFDE---------------------E-AYKNVNQEVVDF 68 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTC-CSEEEEEESSCCCCCS---------------------G-GGGGCEEEECCG
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-CCEEEEEecChhhhcc---------------------c-ccceeeeeeecc
Confidence 4578999999999999999999999974 4679999997654221 1 345788888999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEK 259 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~ 259 (614)
.+.+ ++...++++|+|||+|+......+.....++|+.++.+++++|++ .++++|||+||..++...
T Consensus 69 ~~~~------~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~v~~fi~~Ss~~~~~~~------ 135 (232)
T d2bkaa1 69 EKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKA-GGCKHFNLLSSKGADKSS------ 135 (232)
T ss_dssp GGGG------GGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHH-TTCCEEEEECCTTCCTTC------
T ss_pred cccc------cccccccccccccccccccccccchhhhhhhcccccceeeecccc-cCccccccCCccccccCc------
Confidence 8865 788888999999999998877777788899999999999999999 589999999999764321
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCC-EEEeecceeecccCCCCcccc
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMP-CLMLRPSIIIPVWREPLPGWT 338 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp-~~IvRp~~I~g~~~~p~~gw~ 338 (614)
++.|+.+|+.+|+.+.+. +++ ++|+|||.|+|+....
T Consensus 136 ----------------------------------~~~Y~~~K~~~E~~l~~~---~~~~~~IlRP~~i~G~~~~~----- 173 (232)
T d2bkaa1 136 ----------------------------------NFLYLQVKGEVEAKVEEL---KFDRYSVFRPGVLLCDRQES----- 173 (232)
T ss_dssp ----------------------------------SSHHHHHHHHHHHHHHTT---CCSEEEEEECCEEECTTGGG-----
T ss_pred ----------------------------------cchhHHHHHHhhhccccc---cccceEEecCceeecCCCcC-----
Confidence 278999999999999876 665 8999999999986431
Q ss_pred CCCCchHH-HHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 339 DNINGPTG-LLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 339 d~~~g~~~-~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
.+.. ++.....+ ..........||++|+|++++.++..+. .++++.+.+
T Consensus 174 ----~~~~~~~~~~~~~-----~~~~~~~~~~I~~~dvA~a~i~~~~~~~-----~~~~~i~~~ 223 (232)
T d2bkaa1 174 ----RPGEWLVRKFFGS-----LPDSWASGHSVPVVTVVRAMLNNVVRPR-----DKQMELLEN 223 (232)
T ss_dssp ----SHHHHHHHHHHCS-----CCTTGGGGTEEEHHHHHHHHHHHHTSCC-----CSSEEEEEH
T ss_pred ----cHHHHHHHHHhhc-----cCCcccCCCeEEHHHHHHHHHHHHhcCc-----cCCeEEEcH
Confidence 1111 22222222 1233444557999999999998886654 456776654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.93 E-value=1.6e-25 Score=224.89 Aligned_cols=269 Identities=15% Similarity=0.089 Sum_probs=192.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|+++|.+.|++ |+++.|.+ +|++++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~---Vi~~~r~~-------------------------------------~D~~d~ 41 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVE---VIPTDVQD-------------------------------------LDITNV 41 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEE---EEEECTTT-------------------------------------CCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE---EEEeechh-------------------------------------ccCCCH
Confidence 78999999999999999999999876 78887742 356654
Q ss_pred CCCCCHHHHHHHhc--cccEEEEcccccChhH---HHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 183 ELAIKESDRQLLAS--EVDIMIHGAATIRFDE---ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~--~vd~ViH~AA~v~~~~---~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
+ .++++++ ++|+|||+||...... ........|+.++.++++.+... ...+++.||..+++... +
T Consensus 42 ~------~~~~~l~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~ss~~v~~~~~~~~ 113 (281)
T d1vl0a_ 42 L------AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV--GAEIVQISTDYVFDGEAKEP 113 (281)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH--TCEEEEEEEGGGSCSCCSSC
T ss_pred H------HHHHHHHHcCCCEEEeeccccccccccccchhhcccccccccccccccccc--cccccccccceeeecccccc
Confidence 4 6677766 5699999999876433 34567888999999999999883 45778888876655443 4
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
..|...+.|. +.|+.+|..+|+++.+. +.+.+|+||++|||+...
T Consensus 114 ~~e~~~~~~~-----------------------------~~~~~~k~~~e~~~~~~---~~~~~i~R~~~vyG~~~~--- 158 (281)
T d1vl0a_ 114 ITEFDEVNPQ-----------------------------SAYGKTKLEGENFVKAL---NPKYYIVRTAWLYGDGNN--- 158 (281)
T ss_dssp BCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHH---CSSEEEEEECSEESSSSC---
T ss_pred ccccccccch-----------------------------hhhhhhhhHHHHHHHHh---CCCccccceeEEeCCCcc---
Confidence 5555443332 67999999999999887 889999999999998542
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
....++..+..+....+. ++..+++++++|+++++..++.+. ..++||++++ +++|+.|+++.
T Consensus 159 -------~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~D~~~~~~~~~~~~------~~g~~~~~~~--~~~s~~e~~~~ 221 (281)
T d1vl0a_ 159 -------FVKTMINLGKTHDELKVV--HDQVGTPTSTVDLARVVLKVIDEK------NYGTFHCTCK--GICSWYDFAVE 221 (281)
T ss_dssp -------HHHHHHHHHHHCSEEEEE--SSCEECCEEHHHHHHHHHHHHHHT------CCEEEECCCB--SCEEHHHHHHH
T ss_pred -------cccchhhhhccCCceeec--CCceeccchhhhhhhhhhhhhhhc------ccCceeEeCC--CccchHHHHHH
Confidence 233455555555544444 468899999999999999998764 3469999999 88999999999
Q ss_pred HhhhcccccCCCCccccCCccccc--chhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhh
Q psy6053 416 GKSIVTTEVPLNGCVWYPGGSMKS--NRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFEVF 486 (614)
Q Consensus 416 ~~~~~g~~~p~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~~~ 486 (614)
+.+.+|.+.++. +.|...+.. .+..+. ..-.+.+.+.+|++|. .+.+.+++.++.+
T Consensus 222 i~~~~g~~~~i~---~i~~~~~~~~a~rp~~~----------~ld~~k~~~~~g~~~~--~~~~~l~~~l~~l 279 (281)
T d1vl0a_ 222 IFRLTGIDVKVT---PCTTEEFPRPAKRPKYS----------VLRNYMLELTTGDITR--EWKESLKEYIDLL 279 (281)
T ss_dssp HHHHHCCCCEEE---EECSTTSCCSSCCCSBC----------CBCCHHHHHTTCCCCC--BHHHHHHHHHHHH
T ss_pred HHHHhCCCceEE---eccHHHcCCcCCCcccc----------ccCHHHHHHHhCCCCC--CHHHHHHHHHHHh
Confidence 999989875432 122111000 000000 0013455677899886 3556777755544
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.92 E-value=1.3e-24 Score=220.84 Aligned_cols=242 Identities=11% Similarity=0.030 Sum_probs=175.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHH--HHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNAR--QRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~--~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++|||||||||+|++|+++|+++|++ |++++|+....... +++... ...+++++.||+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~---V~~~~R~~~~~~~~~~~~~~~~----------------~~~~v~~v~~d~ 63 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPEVVSNIDKVQMLLYF----------------KQLGAKLIEASL 63 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCSCCSSCHHHHHHHHHH----------------HTTTCEEECCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCE---EEEEECCCcccchhHHHHHhhh----------------ccCCcEEEEeec
Confidence 467999999999999999999999988 89999987665432 111111 235789999999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEK 259 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~ 259 (614)
.+.+ .+..+++++++++|+++.... ..|..++.+++++|.+. +..++++.||..++.....
T Consensus 64 ~d~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~a~~~-~~~~~v~~Ss~g~~~~~~~---- 124 (312)
T d1qyda_ 64 DDHQ------RLVDALKQVDVVISALAGGVL--------SHHILEQLKLVEAIKEA-GNIKRFLPSEFGMDPDIME---- 124 (312)
T ss_dssp SCHH------HHHHHHTTCSEEEECCCCSSS--------STTTTTHHHHHHHHHHS-CCCSEEECSCCSSCTTSCC----
T ss_pred ccch------hhhhhccCcchhhhhhhhccc--------ccchhhhhHHHHHHHHh-cCCcEEEEeeccccCCCcc----
Confidence 9866 788899999999999886432 35677788999999995 6677788887655433211
Q ss_pred cCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccC
Q psy6053 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTD 339 (614)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d 339 (614)
.+. .....|..+|..+|+...+ .+++++++||+.++|....+...+..
T Consensus 125 ---~~~--------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~i~r~~~~~g~~~~~~~~~~~ 172 (312)
T d1qyda_ 125 ---HAL--------------------------QPGSITFIDKRKVRRAIEA---ASIPYTYVSSNMFAGYFAGSLAQLDG 172 (312)
T ss_dssp ---CCC--------------------------SSTTHHHHHHHHHHHHHHH---TTCCBCEEECCEEHHHHTTTSSCTTC
T ss_pred ---ccc--------------------------chhhhhhHHHHHHHHhhcc---cccceEEeccceeecCCccchhhHHH
Confidence 000 0124555666666655444 38999999999999987655443322
Q ss_pred CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhh
Q psy6053 340 NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSI 419 (614)
Q Consensus 340 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~ 419 (614)
.. ...+....++++++..+++|+++|+|++++.++.++.. ....+|+++++ +.+|++|+++.+.+.
T Consensus 173 ~~---------~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~---~~~~~~~~~~~--~~~s~~e~~~~~~~~ 238 (312)
T d1qyda_ 173 HM---------MPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT---LNKTMYIRPPM--NILSQKEVIQIWERL 238 (312)
T ss_dssp CS---------SCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG---SSSEEECCCGG--GEEEHHHHHHHHHHH
T ss_pred Hh---------hhcccccccccccccccceeeHHHHHHHHHHHhcCccc---cCceEEEeCCC--cCCCHHHHHHHHHHH
Confidence 21 12233345678899999999999999999999977653 13345677776 789999999999999
Q ss_pred cccccCCC
Q psy6053 420 VTTEVPLN 427 (614)
Q Consensus 420 ~g~~~p~~ 427 (614)
+|.+.+..
T Consensus 239 ~g~~~~~~ 246 (312)
T d1qyda_ 239 SEQNLDKI 246 (312)
T ss_dssp HTCCCEEC
T ss_pred HCCCCeEE
Confidence 89876544
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.91 E-value=4.2e-24 Score=215.66 Aligned_cols=237 Identities=11% Similarity=0.114 Sum_probs=173.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||+|++++++|+++|++ |++++|........++...+.. + ...+++++.+|+.+
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~---V~~l~R~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~d~~~ 66 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHP---TFLLVRESTASSNSEKAQLLES------F-------KASGANIVHGSIDD 66 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCCCCTTTTHHHHHHHHH------H-------HTTTCEEECCCTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCe---EEEEECCCccccchhHHHHHHh------h-------ccCCcEEEEeeccc
Confidence 578999999999999999999999987 8999998766543333322110 0 23568899999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCcccccccC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPY 261 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~~ 261 (614)
.. .....+++++.|+|+++... +.++.+++++++.. +.+.+++.||........+..+.
T Consensus 67 ~~------~~~~~~~~~~~vi~~~~~~~------------~~~~~~~~~a~~~~-~~~~~~~~s~~~~~~~~~~~~~~-- 125 (307)
T d1qyca_ 67 HA------SLVEAVKNVDVVISTVGSLQ------------IESQVNIIKAIKEV-GTVKRFFPSEFGNDVDNVHAVEP-- 125 (307)
T ss_dssp HH------HHHHHHHTCSEEEECCCGGG------------SGGGHHHHHHHHHH-CCCSEEECSCCSSCTTSCCCCTT--
T ss_pred ch------hhhhhhhhceeeeecccccc------------cchhhHHHHHHHHh-ccccceeeecccccccccccccc--
Confidence 66 77888889999999998643 34556778888885 77888888876443222111100
Q ss_pred CCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCCC
Q psy6053 262 PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNI 341 (614)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~~ 341 (614)
...|...+...|..+.+. +++++|+||+.++|+...++..+...
T Consensus 126 --------------------------------~~~~~~~~~~~~~~~~~~---~~~~~i~r~~~v~g~~~~~~~~~~~~- 169 (307)
T d1qyca_ 126 --------------------------------AKSVFEVKAKVRRAIEAE---GIPYTYVSSNCFAGYFLRSLAQAGLT- 169 (307)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHH---TCCBEEEECCEEHHHHTTTTTCTTCS-
T ss_pred --------------------------------ccccccccccccchhhcc---CCCceecccceecCCCccchhhhhhh-
Confidence 134566677777777665 89999999999999876543332221
Q ss_pred CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhhhcc
Q psy6053 342 NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKSIVT 421 (614)
Q Consensus 342 ~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~~~g 421 (614)
..++....+++++++.+++++++|+|++++.++.++.. ....+||++++ +.+|+.|+++.+.+.+|
T Consensus 170 ---------~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~---~~~~~~~~~~~--~~~s~~ei~~~~~~~~G 235 (307)
T d1qyca_ 170 ---------APPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRT---LNKTLYLRLPA--NTLSLNELVALWEKKID 235 (307)
T ss_dssp ---------SCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGG---TTEEEECCCGG--GEEEHHHHHHHHHHHTT
T ss_pred ---------hhhcccceeeecccccccCCcHHHHHHHHHHHhcChhh---cCceeEEeCCC--CccCHHHHHHHHHHHHC
Confidence 23444556678899999999999999999998876653 13346777777 88999999999999999
Q ss_pred cccC
Q psy6053 422 TEVP 425 (614)
Q Consensus 422 ~~~p 425 (614)
.+.+
T Consensus 236 ~~~~ 239 (307)
T d1qyca_ 236 KTLE 239 (307)
T ss_dssp SCCE
T ss_pred CCCc
Confidence 8644
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.8e-24 Score=216.84 Aligned_cols=292 Identities=15% Similarity=0.110 Sum_probs=174.4
Q ss_pred EEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCCC
Q psy6053 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADEL 184 (614)
Q Consensus 105 VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~l 184 (614)
|||||||||||++|+++|+++|+. +|+++.+-.++... .++. ... ..|..+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~--~V~~~d~~~~~~~~-~~~~------------------~~~-----~~~~~~~~- 54 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKF-VNLV------------------DLN-----IADYMDKE- 54 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGG-HHHH------------------TSC-----CSEEEEHH-
T ss_pred EEEecCccHHHHHHHHHHHhCCCC--eEEEEECCCCcchh-hccc------------------ccc-----hhhhccch-
Confidence 899999999999999999999853 37777654433211 1111 001 11111110
Q ss_pred CCCHHHHHHH-----hccccEEEEcccccChh-HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--cc
Q psy6053 185 AIKESDRQLL-----ASEVDIMIHGAATIRFD-EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--VL 256 (614)
Q Consensus 185 GLs~~~~~~l-----~~~vd~ViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~i 256 (614)
...... ...+++|+|+||..... .+.......|+.++.+++++|+.. +++ +++.||..++.... ..
T Consensus 55 ----~~~~~~~~~~~~~~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~i~-~v~~ss~~~~~~~~~~~~ 128 (307)
T d1eq2a_ 55 ----DFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EIP-FLYASSAATYGGRTSDFI 128 (307)
T ss_dssp ----HHHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TCC-EEEEEEGGGGTTCCSCBC
T ss_pred ----HHHHHHhhhhcccchhhhhhhcccccccccccccccccccccccccccccccc-ccc-cccccccccccccccccc
Confidence 012222 24689999999866533 344567788999999999999994 665 66666665543322 22
Q ss_pred ccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-CCCCEEEeecceeecccCCCCc
Q psy6053 257 YEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 257 ~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-~glp~~IvRp~~I~g~~~~p~~ 335 (614)
+|+.... ..+.|+.+|..+|.++..+.. .+++++++||+.|||+...+-.
T Consensus 129 ~~~~~~~-----------------------------~~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~ 179 (307)
T d1eq2a_ 129 ESREYEK-----------------------------PLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKG 179 (307)
T ss_dssp SSGGGCC-----------------------------CSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGG
T ss_pred ccccccc-----------------------------cccccccccchhhhhccccccccccccccccceeEeeccccccc
Confidence 3322211 237899999999999999987 7999999999999998653211
Q ss_pred cccCCCCch-HHHHHHHhcCcee-eEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHH
Q psy6053 336 GWTDNINGP-TGLLIGAGKGVIR-TMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEII 413 (614)
Q Consensus 336 gw~d~~~g~-~~~~~~~~~g~~~-~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~ 413 (614)
..... ..++..+..|... ...+++...+++++++|+++++..+..+. ...+||++++ ++.+++|++
T Consensus 180 ----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~------~~~~~~~~~~--~~~si~~i~ 247 (307)
T d1eq2a_ 180 ----SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG------VSGIFNLGTG--RAESFQAVA 247 (307)
T ss_dssp ----GGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHC------CCEEEEESCS--CCBCHHHHH
T ss_pred ----cccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhc------cccccccccc--cchhHHHHH
Confidence 11122 2344455555443 34578888999999999999999888653 4579999999 889999999
Q ss_pred HHHhhhcccccCCCCccccCCcccccchhHHHHHHHHHhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy6053 414 DIGKSIVTTEVPLNGCVWYPGGSMKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLVKIQDRINKGFE 484 (614)
Q Consensus 414 ~~~~~~~g~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pa~~~d~~~~~~G~~P~~~~l~~ki~~~~~ 484 (614)
+.+.+..+ +.... +.|.......... .+.. .-.+.+.+.+||+|.. .+.+.+.+..+
T Consensus 248 ~~i~~~~~-~~~i~---~~~~~~~~~~~~~-------~~~~--~d~~k~~~~~~~~p~~-sl~egi~~~i~ 304 (307)
T d1eq2a_ 248 DATLAYHK-KGQIE---YIPFPDKLKGRYQ-------AFTQ--ADLTNLRAAGYDKPFK-TVAEGVTEYMA 304 (307)
T ss_dssp HHC-------------------------CC-------CSCC--BCCHHHHHTTCCCCCC-CHHHHHHHHHH
T ss_pred HHHHHhcC-CCCee---EeeCCccCCCCCc-------eeee--cCHHHHHHHHCCCCCC-CHHHHHHHHHH
Confidence 99988733 22111 1110000000000 0000 0124567889999987 78888887443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.9e-23 Score=198.49 Aligned_cols=201 Identities=13% Similarity=0.086 Sum_probs=151.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+|+|+|||||||+|++++++|+++|++ |.+++|+...... . ...+++++.||++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~---V~~~~R~~~~~~~---------------------~-~~~~~~~~~gD~~ 56 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYE---VTVLVRDSSRLPS---------------------E-GPRPAHVVVGDVL 56 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCGGGSCS---------------------S-SCCCSEEEESCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEEcChhhccc---------------------c-ccccccccccccc
Confidence 4689999999999999999999999976 8999997543110 0 3357899999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKP 260 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~ 260 (614)
+++ ++.++++++|+|||++|......+ ..++..++++++++|++ .++++||++||+.+..+.......
T Consensus 57 d~~------~l~~al~~~d~vi~~~g~~~~~~~----~~~~~~~~~~l~~aa~~-~~v~r~i~~ss~~~~~~~~~~~~~- 124 (205)
T d1hdoa_ 57 QAA------DVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKA-HGVDKVVACTSAFLLWDPTKVPPR- 124 (205)
T ss_dssp SHH------HHHHHHTTCSEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHH-HTCCEEEEECCGGGTSCTTCSCGG-
T ss_pred chh------hHHHHhcCCCEEEEEeccCCchhh----hhhhHHHHHHHHHHHHh-cCCCeEEEEeeeeccCCCcccccc-
Confidence 876 899999999999999987543222 24677899999999999 499999999998765432211000
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCC
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN 340 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~ 340 (614)
-..|...|..+|+++++. |++++|+||+.+++....
T Consensus 125 ---------------------------------~~~~~~~~~~~e~~l~~~---~~~~tiirp~~~~~~~~~-------- 160 (205)
T d1hdoa_ 125 ---------------------------------LQAVTDDHIRMHKVLRES---GLKYVAVMPPHIGDQPLT-------- 160 (205)
T ss_dssp ---------------------------------GHHHHHHHHHHHHHHHHT---CSEEEEECCSEEECCCCC--------
T ss_pred ---------------------------------ccccchHHHHHHHHHHhc---CCceEEEecceecCCCCc--------
Confidence 035888899999998765 999999999999764221
Q ss_pred CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 341 INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 341 ~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
|.. .+..++.....+|+++|+|++++.++.++.. .++.+.++
T Consensus 161 -------------~~~-~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~----~g~~~~~s 202 (205)
T d1hdoa_ 161 -------------GAY-TVTLDGRGPSRVISKHDLGHFMLRCLTTDEY----DGHSTYPS 202 (205)
T ss_dssp -------------SCC-EEESSSCSSCSEEEHHHHHHHHHHTTSCSTT----TTCEEEEE
T ss_pred -------------ccE-EEeeCCCCCCCcCCHHHHHHHHHHHhCCCCC----CCEEEecC
Confidence 111 2344667777899999999999999876543 45555443
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.89 E-value=3.8e-23 Score=201.60 Aligned_cols=229 Identities=14% Similarity=0.060 Sum_probs=161.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.++|||||||||+|++++++|+++|+++ .|+++.|+++. ... ...+++++.+|+++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v-~v~~~~R~~~~------~~~-----------------~~~~~~~~~~d~~~ 58 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQG------KEK-----------------IGGEADVFIGDITD 58 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTC-EEEEEESCHHH------HHH-----------------TTCCTTEEECCTTS
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcE-EEEEEcCCHHH------HHh-----------------ccCCcEEEEeeecc
Confidence 4799999999999999999999999875 58888886421 111 33578899999998
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChh----------------HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFD----------------EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~----------------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
++ ++.++++++|+|||+|+..... ........+|+.|+++++..+... ..+.+.+.|
T Consensus 59 ~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 131 (252)
T d2q46a1 59 AD------SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVG 131 (252)
T ss_dssp HH------HHHHHHTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEE
T ss_pred cc------ccccccccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-ccccccccc
Confidence 76 8889999999999999864321 112345688999999999999984 788888888
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecce
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSI 325 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~ 325 (614)
+........+... .....|...+...+.+..+. |++++++||+.
T Consensus 132 ~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~ilRp~~ 175 (252)
T d2q46a1 132 SMGGTNPDHPLNK---------------------------------LGNGNILVWKRKAEQYLADS---GTPYTIIRAGG 175 (252)
T ss_dssp ETTTTCTTCGGGG---------------------------------GGGCCHHHHHHHHHHHHHHS---SSCEEEEEECE
T ss_pred ccccCCCCccccc---------------------------------ccccchhhhhhhhhhhhhcc---cccceeecceE
Confidence 8755332211100 00145566666655554443 99999999999
Q ss_pred eecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCC-c
Q psy6053 326 IIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQ-E 404 (614)
Q Consensus 326 I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~-~ 404 (614)
++|+............ ........++||+||+|++++.++.++.. .+++||++++. .
T Consensus 176 v~g~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~Dva~a~~~~l~~~~~----~g~~~~i~~~~~~ 233 (252)
T d2q46a1 176 LLDKEGGVRELLVGKD------------------DELLQTDTKTVPRADVAEVCIQALLFEEA----KNKAFDLGSKPEG 233 (252)
T ss_dssp EECSCTTSSCEEEEST------------------TGGGGSSCCEEEHHHHHHHHHHHTTCGGG----TTEEEEEEECCTT
T ss_pred EECCCcchhhhhhccC------------------cccccCCCCeEEHHHHHHHHHHHhCCccc----cCcEEEEeeCCCC
Confidence 9998654322111100 00123345689999999999999987654 67899998752 1
Q ss_pred ccccHHHHHHHHhhh
Q psy6053 405 WQVSWQEIIDIGKSI 419 (614)
Q Consensus 405 ~~it~~e~~~~~~~~ 419 (614)
...++.++.+++.+.
T Consensus 234 ~~~~~~~~~~lf~~i 248 (252)
T d2q46a1 234 TSTPTKDFKALFSQV 248 (252)
T ss_dssp TSCCCCCHHHHHTTC
T ss_pred CChhHHHHHHHHHHH
Confidence 345677777777665
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.88 E-value=6.1e-22 Score=199.68 Aligned_cols=229 Identities=19% Similarity=0.189 Sum_probs=161.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|||||||||||++|++.|++.|+ ++++.+..+. +.+|++++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~----~v~~~~~~~~---------------------------------~~~Dl~~~ 43 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN----LIALDVHSKE---------------------------------FCGDFSNP 43 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE----EEEECTTCSS---------------------------------SCCCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC----EEEEECCCcc---------------------------------ccCcCCCH
Confidence 6899999999999999999998864 4455554321 24788875
Q ss_pred CCCCCHHHHHHHhcc--ccEEEEcccccChh---HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCc--c
Q psy6053 183 ELAIKESDRQLLASE--VDIMIHGAATIRFD---EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEK--V 255 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~--vd~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~--~ 255 (614)
+ .+++++++ +|+|||+||.+... .........|+.++.+++++|++. + .+++++||+.++.... +
T Consensus 44 ~------~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~~~ss~~~~~~~~~~~ 115 (298)
T d1n2sa_ 44 K------GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G-AWVVHYSTDYVFPGTGDIP 115 (298)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T-CEEEEEEEGGGSCCCTTCC
T ss_pred H------HHHHHHHHcCCCEEEEecccccccccccCccccccccccccccchhhhhcc-c-cccccccccccccCCCCCC
Confidence 5 77777764 59999999987653 334567899999999999999984 4 5688888886554433 5
Q ss_pred cccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCc
Q psy6053 256 LYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335 (614)
Q Consensus 256 i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~ 335 (614)
.+|...+.|. +.|+.+|..+|..+.++.. ...++|++..++....
T Consensus 116 ~~E~~~~~p~-----------------------------~~y~~~k~~~e~~~~~~~~---~~~~~~~~~~~~~~~~--- 160 (298)
T d1n2sa_ 116 WQETDATSPL-----------------------------NVYGKTKLAGEKALQDNCP---KHLIFRTSWVYAGKGN--- 160 (298)
T ss_dssp BCTTSCCCCS-----------------------------SHHHHHHHHHHHHHHHHCS---SEEEEEECSEECSSSC---
T ss_pred CccccccCCC-----------------------------chHhhhhhhhhhhHHhhhc---ccccccccceeeccCC---
Confidence 6666444433 7899999999999988743 4566666666544221
Q ss_pred cccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHH
Q psy6053 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415 (614)
Q Consensus 336 gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~ 415 (614)
.....+...+..+... ...+....++++++|+++++..++...... +...++||++++ +.+++.++.+.
T Consensus 161 ------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~i~~~~~~-~~~~~~~n~~~~--~~~~~~~~~~~ 229 (298)
T d1n2sa_ 161 ------NFAKTMLRLAKERQTL--SVINDQYGAPTGAELLADCTAHAIRVALNK-PEVAGLYHLVAG--GTTTWHDYAAL 229 (298)
T ss_dssp ------CHHHHHHHHHHHCSEE--EEECSCEECCEEHHHHHHHHHHHHHHHHHC-GGGCEEEECCCB--SCEEHHHHHHH
T ss_pred ------ccchhhhhhhccccee--ecccceeecccccchHHHHHHHHHhhhhcc-ccccccccccCC--CceecHHHHHH
Confidence 1122222333333222 234567789999999999988877643321 136789999998 88999999998
Q ss_pred Hhhhccc
Q psy6053 416 GKSIVTT 422 (614)
Q Consensus 416 ~~~~~g~ 422 (614)
+.+..+.
T Consensus 230 i~~~~~~ 236 (298)
T d1n2sa_ 230 VFDEARK 236 (298)
T ss_dssp HHHHHHH
T ss_pred HHhhhhc
Confidence 8776443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=5.3e-23 Score=198.43 Aligned_cols=190 Identities=16% Similarity=0.091 Sum_probs=135.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|+|||||||||+|++|+++|+++|+. .+|+++.|.+.. ..+++....+|+.+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~-~~v~~~~r~~~~--------------------------~~~~~~~~~~d~~~ 54 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTL-AKVIAPARKALA--------------------------EHPRLDNPVGPLAE 54 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTC-CEEECCBSSCCC--------------------------CCTTEECCBSCHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCe-EEEEEEeCCchh--------------------------hcccccccccchhh
Confidence 489999999999999999999999764 468888886543 22344444444432
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChh-HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFD-EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKP 260 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~-~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~ 260 (614)
....+...+|+||||+|..... .....+.+.|+.++.+++++|++ .++++|+|+||..+.+..
T Consensus 55 --------~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~v~~~i~~Ss~~~~~~~------- 118 (212)
T d2a35a1 55 --------LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALE-MGARHYLVVSALGADAKS------- 118 (212)
T ss_dssp --------HGGGCCSCCSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHH-TTCCEEEEECCTTCCTTC-------
T ss_pred --------hhhccccchheeeeeeeeeccccccccccccchhhhhhhccccccc-cccccccccccccccccc-------
Confidence 2233345689999999876432 33456789999999999999999 599999999998764321
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCC-EEEeecceeecccCCCCccccC
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMP-CLMLRPSIIIPVWREPLPGWTD 339 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp-~~IvRp~~I~g~~~~p~~gw~d 339 (614)
.+.|+.+|+.+|+.+.+. +++ ++|+||++|||+......++.
T Consensus 119 ---------------------------------~~~y~~~K~~~E~~l~~~---~~~~~~I~Rp~~v~G~~~~~~~~~~- 161 (212)
T d2a35a1 119 ---------------------------------SIFYNRVKGELEQALQEQ---GWPQLTIARPSLLFGPREEFRLAEI- 161 (212)
T ss_dssp ---------------------------------SSHHHHHHHHHHHHHTTS---CCSEEEEEECCSEESTTSCEEGGGG-
T ss_pred ---------------------------------ccchhHHHHHHhhhcccc---ccccceeeCCcceeCCcccccHHHH-
Confidence 268999999999988765 665 999999999998764311100
Q ss_pred CCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 340 NINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 340 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+.. .+..+ .......|+++|+|++++.++.++
T Consensus 162 -----------~~~-~~~~~---~~~~~~~i~v~DvA~ai~~~~~~~ 193 (212)
T d2a35a1 162 -----------LAA-PIARI---LPGKYHGIEACDLARALWRLALEE 193 (212)
T ss_dssp -----------TTC-CCC-------CHHHHHHHHHHHHHHHHHHTCC
T ss_pred -----------HHH-HHhhc---cCCCCcEEEHHHHHHHHHHHHcCC
Confidence 011 11111 112345699999999999988654
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.81 E-value=4.1e-19 Score=184.05 Aligned_cols=237 Identities=14% Similarity=0.004 Sum_probs=168.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+.|+|+|||||||+|++|+++|+++|++ |++++|+.++.... ++ . ...+++++.||+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~---V~~l~R~~~~~~~~----~~---------~------~~~~v~~~~gD~~ 59 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHH---VRAQVHSLKGLIAE----EL---------Q------AIPNVTLFQGPLL 59 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCC---EEEEESCSCSHHHH----HH---------H------TSTTEEEEESCCT
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCe---EEEEECCcchhhhh----hh---------c------ccCCCEEEEeeCC
Confidence 3589999999999999999999999988 89999987653211 11 0 3467999999999
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCceeccCCccccccc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKP 260 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~~~~~~~i~E~~ 260 (614)
++. +.++.++.++|++++...... ..|+.++.+++++|++. +++++++.||.........
T Consensus 60 d~~-----~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~aa~~a-gv~~~v~~Ss~~~~~~~~~----- 119 (350)
T d1xgka_ 60 NNV-----PLMDTLFEGAHLAFINTTSQA---------GDEIAIGKDLADAAKRA-GTIQHYIYSSMPDHSLYGP----- 119 (350)
T ss_dssp TCH-----HHHHHHHTTCSEEEECCCSTT---------SCHHHHHHHHHHHHHHH-SCCSEEEEEECCCGGGTSS-----
T ss_pred CcH-----HHHHHHhcCCceEEeeccccc---------chhhhhhhHHHHHHHHh-CCCceEEEeeccccccCCc-----
Confidence 854 357788899999998765432 24667788999999995 8888888888754322111
Q ss_pred CCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeecceeecccCCCCccccCC
Q psy6053 261 YPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDN 340 (614)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp~~I~g~~~~p~~gw~d~ 340 (614)
.....|..+|...|..+.+. +++++++||+..++....+..+....
T Consensus 120 -------------------------------~~~~~~~~~k~~~~~~~~~~---~~~~~~vr~~~~~~~~~~~~~~~~~~ 165 (350)
T d1xgka_ 120 -------------------------------WPAVPMWAPKFTVENYVRQL---GLPSTFVYAGIYNNNFTSLPYPLFQM 165 (350)
T ss_dssp -------------------------------CCCCTTTHHHHHHHHHHHTS---SSCEEEEEECEEGGGCBSSSCSSCBE
T ss_pred -------------------------------ccchhhhhhHHHHHHHHHhh---ccCceeeeeceeeccccccccccccc
Confidence 11256788898888877765 78999999999887643322111100
Q ss_pred CCchHHHHHHHhcCcee-eEeeCCCccccceeH-HHHHHHHHHHHHhhhhcCCCCccEEEeccCCcccccHHHHHHHHhh
Q psy6053 341 INGPTGLLIGAGKGVIR-TMFCDNTGYADFLPV-DITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDIGKS 418 (614)
Q Consensus 341 ~~g~~~~~~~~~~g~~~-~~~~~~~~~~d~vpV-Ddva~aii~~~~~~~~~~~~~~~vyni~~~~~~~it~~e~~~~~~~ 418 (614)
. ....|... ..+.+++....++++ +|+++++..++.+... ...+++|+++++ .+|+.|+++.+.+
T Consensus 166 --~------~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~--~~~G~~~~~~g~---~~T~~eia~~l~~ 232 (350)
T d1xgka_ 166 --E------LMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQ--KWNGHRIALTFE---TLSPVQVCAAFSR 232 (350)
T ss_dssp --E------ECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHH--HHTTCEEEECSE---EECHHHHHHHHHH
T ss_pred --c------ccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChh--hcCCeEEEEeCC---cCCHHHHHHHHHH
Confidence 0 01122222 234567788888875 8999999888865421 015789999865 5999999999999
Q ss_pred hcccccCC
Q psy6053 419 IVTTEVPL 426 (614)
Q Consensus 419 ~~g~~~p~ 426 (614)
.+|++...
T Consensus 233 ~~G~~v~~ 240 (350)
T d1xgka_ 233 ALNRRVTY 240 (350)
T ss_dssp HHTSCEEE
T ss_pred HHCCcceE
Confidence 99987543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=1.3e-14 Score=142.03 Aligned_cols=212 Identities=11% Similarity=0.117 Sum_probs=149.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||+|.||+.++++|++.|.+ |++..|++ ++++++.+ + ...++.++.+|+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~---V~~~~r~~------~~~~~~~~---------~----~~~~~~~~~~Dv 61 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAK---VVFGDILD------EEGKAMAA---------E----LADAARYVHLDV 61 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH---------H----TGGGEEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH---------H----hhCcceEEEeec
Confidence 67999999999999999999999999976 88888863 34443322 1 235688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V 242 (614)
++++ +.+++++ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. | ++-.++|
T Consensus 62 ~~~~------~v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii 135 (244)
T d1nffa_ 62 TQPA------QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSII 135 (244)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEE
Confidence 9976 6655553 58999999997542 367888999999999988876533 2 2345899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+.+
T Consensus 136 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIrV 177 (244)
T d1nffa_ 136 NISSIEGLAGTV--------------------------------------ACHGYTATKFAVRGLTKSTALELGPSGIRV 177 (244)
T ss_dssp EECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred eccccccccccc--------------------------------------cccchhhHHHHHHHHHHHHHHHhcccCEEE
Confidence 999997643211 014799999988888776654 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..+-||.|-.+..+ |.... ..+ . ..--+...+|+|++++.++..... -..++++.
T Consensus 178 N~I~PG~i~T~~~~----~~~~~-------------~~~-~-----pl~R~~~p~diA~~v~fL~s~~s~--~itG~~i~ 232 (244)
T d1nffa_ 178 NSIHPGLVKTPMTD----WVPED-------------IFQ-T-----ALGRAAEPVEVSNLVVYLASDESS--YSTGAEFV 232 (244)
T ss_dssp EEEEECCBCSGGGT----TSCTT-------------CSC-C-----SSSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCCccChhHh----hhhHH-------------HHh-c-----cccCCCCHHHHHHHHHHHhChhhC--CCcCCEEE
Confidence 99999988544322 11110 000 0 011256679999999888754331 13688888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 233 vDGG 236 (244)
T d1nffa_ 233 VDGG 236 (244)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.60 E-value=2.4e-14 Score=140.94 Aligned_cols=218 Identities=15% Similarity=0.066 Sum_probs=148.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++-||+.++++|++.|.+ |++..|+. +++++..+. ...++.++.+|+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~Dv 60 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGAR---VVLADVLD------EEGAATARE-------------LGDAARYQHLDV 60 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHT-------------TGGGEEEEECCT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH-------------hCCceEEEEccc
Confidence 57999999999999999999999999876 88888863 344443221 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +.+++++ ++|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 61 ~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II 134 (254)
T d1hdca_ 61 TIEE------DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIV 134 (254)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeec
Confidence 9866 6666653 58999999997532 3567889999999999988877531 2456899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 135 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~a~~gIrV 176 (254)
T d1hdca_ 135 NISSAAGLMGLA--------------------------------------LTSSYGASKWGVRGLSKLAAVELGTDRIRV 176 (254)
T ss_dssp EECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred ccccchhccccc--------------------------------------chhhHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 999987643211 015799999988887776654 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..+-||.|-.+. ...................+--...+|+|++++.++..... --.+++++
T Consensus 177 N~I~PG~v~T~~-----------------~~~~~~~~~~~~~~~~pl~R~g~~PedvA~~v~fL~S~~a~--~itG~~i~ 237 (254)
T d1hdca_ 177 NSVHPGMTYTPM-----------------TAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSS--YVTGAELA 237 (254)
T ss_dssp EEEEECSBCCHH-----------------HHHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEeeeCcccCcc-----------------chhcCHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhchhhC--CCCCceEE
Confidence 999999874321 11111100000000000001112358999999988854331 13688998
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 238 vDGG 241 (254)
T d1hdca_ 238 VDGG 241 (254)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 8776
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.57 E-value=4e-14 Score=139.42 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=149.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+||||||++.||..++++|++.|.+ |+++.|....... +.++ .... ...++.++..|+
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~---vii~~r~~~~~~~---~~~~---------~~~~---~~~~~~~~~~d~ 64 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLK---NFVILDRVENPTA---LAEL---------KAIN---PKVNITFHTYDV 64 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCS---EEEEEESSCCHHH---HHHH---------HHHC---TTSEEEEEECCT
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCE---EEEEECCcccHHH---HHHH---------HhhC---CCCCEEEEEeec
Confidence 67999999999999999999999999987 7888887654322 2222 1112 336899999999
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHH-cC-----CCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKE-MK-----HLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~-~~-----~~k~~V~vST 246 (614)
+.+. ++.+.++ .++|++||+||... .+.++..+++|+.|+.++.+++.. |. ...++|++||
T Consensus 65 ~~~~-----~~~~~~~~~~~~~~g~iDilvnnAG~~~-~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS 138 (254)
T d1sbya1 65 TVPV-----AESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp TSCH-----HHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred CCCH-----HHHHHHHHHHHHHcCCCCEEEeCCCCCC-HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence 8542 2333333 36899999999765 567888999999999999887765 21 2356999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+..... ....|+.||+....+.+..+. .|+.+..+.
T Consensus 139 ~~~~~~~~--------------------------------------~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~ 180 (254)
T d1sbya1 139 VTGFNAIH--------------------------------------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSIN 180 (254)
T ss_dssp GGGTSCCT--------------------------------------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEE
T ss_pred hhhccCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEE
Confidence 87632210 014799999988777766554 589999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
||.|..+..+-...|.+.. ..+.... ......+.+++|++++.+..... .+.++.+..+
T Consensus 181 PG~v~T~~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~e~va~~~~~~~~~~~-----tG~vi~vdgG 239 (254)
T d1sbya1 181 PGITRTPLVHTFNSWLDVE----PRVAELL------------LSHPTQTSEQCGQNFVKAIEANK-----NGAIWKLDLG 239 (254)
T ss_dssp ECSEESHHHHSCCCGGGSC----TTHHHHH------------TTSCCEEHHHHHHHHHHHHHHCC-----TTCEEEEETT
T ss_pred eCCCcCccccccccchhHH----HHHHhcc------------ccCCCCCHHHHHHHHHHhhhCCC-----CCCEEEECCC
Confidence 9998654211111111000 0111111 11234588999999888775432 6888988877
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.57 E-value=3.7e-14 Score=139.09 Aligned_cols=221 Identities=14% Similarity=0.115 Sum_probs=145.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-++||+++||||++.||+.+++.|++.|.+ |++..|.+.. ..++.+++ ...++..+.+|
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~---V~~~~~~~~~-~~~~~~~~-----------------~g~~~~~~~~D 60 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGAD---IAIADLVPAP-EAEAAIRN-----------------LGRRVLTVKCD 60 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSCCH-HHHHHHHH-----------------TTCCEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCchH-HHHHHHHH-----------------cCCcEEEEEee
Confidence 368999999999999999999999999976 7888886532 11111111 33578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++
T Consensus 61 vs~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~I 134 (247)
T d2ew8a1 61 VSQPG------DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRI 134 (247)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCc
Confidence 99876 6666643 68999999997532 3678889999999999888876542 244689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 135 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~gIr 176 (247)
T d2ew8a1 135 INLTSTTYWLKIE--------------------------------------AYTHYISTKAANIGFTRALASDLGKDGIT 176 (247)
T ss_dssp EEECCGGGGSCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred cccccchhcccCc--------------------------------------ccccchhhhccHHHHHHHHHHHhcccCeE
Confidence 9999987643210 014799999988877766554 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+..+... ....... ... .....--+...+|+|++++.++..... --.+++.
T Consensus 177 VN~I~PG~i~T~~~~~~~--------~~~~~~~-~~~-------~~~~l~r~~~pedvA~~v~fL~S~~s~--~itG~~i 238 (247)
T d2ew8a1 177 VNAIAPSLVRTATTEASA--------LSAMFDV-LPN-------MLQAIPRLQVPLDLTGAAAFLASDDAS--FITGQTL 238 (247)
T ss_dssp EEEEEECCC---------------------------C-------TTSSSCSCCCTHHHHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEEeeCCCCCccccccc--------cchhHHH-HHH-------HhccCCCCCCHHHHHHHHHHHhCchhc--CCcCCeE
Confidence 999999988544321100 0000000 000 000011134568999999888754331 1367888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.+|
T Consensus 239 ~vDGG 243 (247)
T d2ew8a1 239 AVDGG 243 (247)
T ss_dssp EESSS
T ss_pred EECCC
Confidence 88766
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.7e-14 Score=136.95 Aligned_cols=219 Identities=14% Similarity=0.173 Sum_probs=151.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||++|||||+|.||+.++++|++.|.+ |++..|++ ++++++.+ ...++..+.+|
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~---V~~~~r~~------~~l~~~~~--------------~~~~~~~~~~D 60 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGAR---VVAVSRTQ------ADLDSLVR--------------ECPGIEPVCVD 60 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------HSTTCEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEECCH------HHHHHHHH--------------hcCCCeEEEEe
Confidence 478999999999999999999999999976 88888863 44444322 22357889999
Q ss_pred CCCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceEEEE
Q psy6053 179 AEADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELFVHI 244 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~V~v 244 (614)
+++++ +.+++++ ++|++||+|+.... .+.++..+++|+.|+..+.+.+.. + ++-.++|++
T Consensus 61 v~d~~------~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~i 134 (244)
T d1pr9a_ 61 LGDWE------ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNV 134 (244)
T ss_dssp TTCHH------HHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCCHH------HHHHHHHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeec
Confidence 99865 6777765 58999999997542 366788999999999888876543 2 244689999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+..+.+.+..+. +|+++..
T Consensus 135 sS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~ 176 (244)
T d1pr9a_ 135 SSQCSQRAVT--------------------------------------NHSVYCSTKGALDMLTKVMALELGPHKIRVNA 176 (244)
T ss_dssp CCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred cccccccccc--------------------------------------chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9987643211 014799999988888876654 6899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+.||.|-.+..+ ................ + .--+...+|+|++++.++..... --.+++.++.
T Consensus 177 I~PG~v~T~~~~-------~~~~~~~~~~~~~~~~-------p--l~R~~~peevA~~v~fL~S~~a~--~itG~~i~vD 238 (244)
T d1pr9a_ 177 VNPTVVMTSMGQ-------ATWSDPHKAKTMLNRI-------P--LGKFAEVEHVVNAILFLLSDRSG--MTTGSTLPVE 238 (244)
T ss_dssp EEECCBCSHHHH-------TTSCSHHHHHHHHTTC-------T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred EeeCcCcChHHh-------hhccChHHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHhCchhC--CcCCcEEEEC
Confidence 999988544211 1111111122222211 0 01245678999999888754331 1367788887
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
+|
T Consensus 239 GG 240 (244)
T d1pr9a_ 239 GG 240 (244)
T ss_dssp TT
T ss_pred cc
Confidence 66
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=1.8e-14 Score=140.35 Aligned_cols=210 Identities=11% Similarity=0.110 Sum_probs=144.2
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||++|||||++.||+.++++|++.|.+ |++..|.... .+++..+.+|
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~---V~~~~r~~~~---------------------------~~~~~~~~~D 53 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHK---VAVTHRGSGA---------------------------PKGLFGVEVD 53 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSSCC---------------------------CTTSEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCcch---------------------------hcCceEEEEe
Confidence 378999999999999999999999999976 8888987543 2456789999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~ 241 (614)
+++++ +.+++++ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. + .+-.++
T Consensus 54 v~~~~------~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~I 127 (237)
T d1uzma1 54 VTDSD------AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRM 127 (237)
T ss_dssp TTCHH------HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCHH------HHHHHHHHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCce
Confidence 99976 6655543 58999999996432 466788999999998887765443 1 355689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 128 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIr 169 (237)
T d1uzma1 128 IFIGSVSGLWGIG--------------------------------------NQANYAASKAGVIGMARSIARELSKANVT 169 (237)
T ss_dssp EEECCCCC-------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCCc--------------------------------------ccHHHHHHHHHHHHHHHHHHhhhhcCCce
Confidence 9999987643210 114799999988877766544 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+..+. . +.......... .+ .--+...+|+|++++.++..... --.++++
T Consensus 170 VN~I~PG~v~T~~~~~-------~--~~~~~~~~~~~----~p-----l~R~~~pedvA~~v~fL~S~~s~--~itG~~i 229 (237)
T d1uzma1 170 ANVVAPGYIDTDMTRA-------L--DERIQQGALQF----IP-----AKRVGTPAEVAGVVSFLASEDAS--YISGAVI 229 (237)
T ss_dssp EEEEEECSBCCHHHHH-------S--CHHHHHHHGGG----CT-----TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred eeeeeeCcCCChhhhc-------c--CHHHHHHHHhc----CC-----CCCCcCHHHHHHHHHHHhCchhc--CCcCCeE
Confidence 9999999884432110 0 01111111111 00 01134568999999888754331 1367888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.+|
T Consensus 230 ~vdGG 234 (237)
T d1uzma1 230 PVDGG 234 (237)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 88765
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.6e-14 Score=141.43 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=149.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |++..|++ ++++++.+. ...+...+.+|+
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~---Vv~~~r~~------~~l~~~~~~-------------~~~~~~~~~~Dv 59 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAK---VIGTATSE------NGAQAISDY-------------LGANGKGLMLNV 59 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESSH------HHHHHHHHH-------------HGGGEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEeCCH------HHHHHHHHH-------------hCCCCcEEEEEe
Confidence 57999999999999999999999999976 78888863 344433211 224678899999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +.+++++ ++|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 60 ~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II 133 (243)
T d1q7ba_ 60 TDPA------SIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRII 133 (243)
T ss_dssp TCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCHH------HhhhhhhhhhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEee
Confidence 9865 6665554 58999999986532 3667889999999999988877542 2446899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+.+
T Consensus 134 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~ela~~gIrV 175 (243)
T d1q7ba_ 134 TIGSVVGTMGNG--------------------------------------GQANYAAAKAGLIGFSKSLAREVASRGITV 175 (243)
T ss_dssp EECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred eecchhhcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhCccCeEE
Confidence 999986543210 014799999988888776654 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..+.||.|-.+..+ ... + .....+.... + .--+...+|+|+++..++..... --.+++.+
T Consensus 176 N~I~PG~i~T~~~~-------~~~-~-~~~~~~~~~~----p-----l~R~~~pedvA~~v~fL~S~~s~--~itGq~i~ 235 (243)
T d1q7ba_ 176 NVVAPGFIETDMTR-------ALS-D-DQRAGILAQV----P-----AGRLGGAQEIANAVAFLASDEAA--YITGETLH 235 (243)
T ss_dssp EEEEECSBCCHHHH-------TSC-H-HHHHHHHTTC----T-----TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEecceEechhhh-------hhh-h-hHHHHHHhcC----C-----CCCCCCHHHHHHHHHHHhCchhc--CCcCCeEE
Confidence 99999987433211 111 1 1111121111 0 11245678999999888854331 13678888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 236 vdGG 239 (243)
T d1q7ba_ 236 VNGG 239 (243)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8766
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.55 E-value=6e-14 Score=138.50 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=143.9
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC-cCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG-KNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~-~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.|-.+++|+||||||.||..++++|+++|.. +|+++.|+... ....+.++++.. ...++.++.
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~--~vvl~~R~~~~~~~~~~~~~~l~~--------------~g~~v~~~~ 68 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAP--HLLLVSRSGPDADGAGELVAELEA--------------LGARTTVAA 68 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCS--EEEEEESSGGGSTTHHHHHHHHHH--------------TTCEEEEEE
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCCccCHHHHHHHHHHHHh--------------ccccccccc
Confidence 4445789999999999999999999999864 47778886433 233333333211 335799999
Q ss_pred CCCCCCCCCCCHHHHHHHhc------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 177 GDAEADELAIKESDRQLLAS------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
+|+++++ +.+.+.+ .+|.|+|+|+.... .+.++..+++|+.|+.++.++... .+..++|+
T Consensus 69 ~Dv~d~~------~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-~~~~~iv~ 141 (259)
T d2fr1a1 69 CDVTDRE------SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE-LDLTAFVL 141 (259)
T ss_dssp CCTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT-SCCSEEEE
T ss_pred cccchHH------HHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhc-cCCceEee
Confidence 9999976 6777665 37899999997542 345677889999999999998877 46789999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhhCCCCEEEeec
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRP 323 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~~glp~~IvRp 323 (614)
+||..+..... .-..|+.+|...|.+..+....|++++.+.|
T Consensus 142 ~SS~a~~~g~~--------------------------------------~~~~YaAaka~l~~la~~~~~~Gi~v~~I~p 183 (259)
T d2fr1a1 142 FSSFASAFGAP--------------------------------------GLGGYAPGNAYLDGLAQQRRSDGLPATAVAW 183 (259)
T ss_dssp EEEHHHHTCCT--------------------------------------TCTTTHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ecchhhccCCc--------------------------------------ccHHHHHHHHhHHHHHHHHHhCCCCEEECCC
Confidence 99986532211 0147999999999998887778999999999
Q ss_pred ceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 324 SIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 324 ~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
|.+.++. ..+. .....+ ...-...++.+++++++..++...
T Consensus 184 g~~~~~g------~~~~----------~~~~~~------~~~G~~~~~~~~~~~~l~~~l~~~ 224 (259)
T d2fr1a1 184 GTWAGSG------MAEG----------PVADRF------RRHGVIEMPPETACRALQNALDRA 224 (259)
T ss_dssp CCBC----------------------------C------TTTTEECBCHHHHHHHHHHHHHTT
T ss_pred CcccCCc------cccc----------hHHHHH------HhcCCCCCCHHHHHHHHHHHHhCC
Confidence 9775431 1110 000000 011134578899999988877654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=1.8e-14 Score=141.29 Aligned_cols=221 Identities=13% Similarity=0.076 Sum_probs=145.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||++|||||++.||+.++++|++.|.+ |++..|.+.. .+..++ .+..++.+|
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~---V~~~~~~~~~---~~~~~~-------------------~~~~~~~~D 56 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGAL---VALCDLRPEG---KEVAEA-------------------IGGAFFQVD 56 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSTTH---HHHHHH-------------------HTCEEEECC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCHHH---HHHHHH-------------------cCCeEEEEe
Confidence 468999999999999999999999999976 8888887532 221111 123568899
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +.+++++ ++|++||+||.... .+.++..+++|+.|+.++.+.+... .+-.++
T Consensus 57 v~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~I 130 (248)
T d2d1ya1 57 LEDER------ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAI 130 (248)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCCHH------HHHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccc
Confidence 99865 6665553 58999999997532 3567889999999999998887642 234589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 131 i~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIr 172 (248)
T d2d1ya1 131 VNVASVQGLFAEQ--------------------------------------ENAAYNASKGGLVNLTRSLALDLAPLRIR 172 (248)
T ss_dssp EEECCGGGTSBCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ccccccccccccc--------------------------------------ccchhHHHHHHHHHHHHHHHHHhhhhCcE
Confidence 9999987643211 014799999988887766554 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+... ........+.......... ...--+...+|+|+++..++..... --.++++
T Consensus 173 VN~I~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~~---------~pl~R~~~pedia~~v~fL~S~~s~--~itG~~i 238 (248)
T d2d1ya1 173 VNAVAPGAIATEAVL---EAIALSPDPERTRRDWEDL---------HALRRLGKPEEVAEAVLFLASEKAS--FITGAIL 238 (248)
T ss_dssp EEEEEECSBCCHHHH---HHHC--------CHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCCCCCchHH---HHhhcCCCHHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhc--CCCCcEE
Confidence 999999987432100 0000000000011111110 0011134579999999888754331 2368888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.+|
T Consensus 239 ~vDGG 243 (248)
T d2d1ya1 239 PVDGG 243 (248)
T ss_dssp EESTT
T ss_pred EcCcC
Confidence 88776
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.54 E-value=2.6e-14 Score=140.97 Aligned_cols=164 Identities=19% Similarity=0.244 Sum_probs=123.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |++..|+. +++++..++ ...++..+.+|+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~l~~~~~~-------------~~~~~~~~~~Dv 60 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGAR---VAIADINL------EAARATAAE-------------IGPAACAIALDV 60 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEE---EEEEESCH------HHHHHHHHH-------------HCTTEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH-------------hCCceEEEEeeC
Confidence 57999999999999999999999999865 88888853 344433221 235688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~ 241 (614)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. + ++-.++
T Consensus 61 t~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~I 134 (256)
T d1k2wa_ 61 TDQA------SIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKI 134 (256)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCcc
Confidence 9876 6666654 58999999996542 366788999999999988875432 2 234689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 135 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIr 176 (256)
T d1k2wa_ 135 INMASQAGRRGEA--------------------------------------LVGVYCATKAAVISLTQSAGLNLIRHGIN 176 (256)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ccccchhhccccc--------------------------------------cccchhhhhhHHHHHHHHHHHHhcccCeE
Confidence 9999987643211 114799999988888766554 6899
Q ss_pred EEEeecceeecc
Q psy6053 318 CLMLRPSIIIPV 329 (614)
Q Consensus 318 ~~IvRp~~I~g~ 329 (614)
+..+.||.|-.+
T Consensus 177 VN~V~PG~i~T~ 188 (256)
T d1k2wa_ 177 VNAIAPGVVDGE 188 (256)
T ss_dssp EEEEEECCBCCT
T ss_pred EEEEecCCCCch
Confidence 999999977443
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.1e-14 Score=137.17 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=148.7
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-++||+++||||++.||+.+++.|++.|.+ |++..|++ ++++++.+ ...++.++.+|
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~---V~i~~r~~------~~~~~~~~--------------~~~~~~~~~~D 59 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR---VVICDKDE------SGGRALEQ--------------ELPGAVFILCD 59 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------HCTTEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH--------------hcCCCeEEEcc
Confidence 368999999999999999999999999976 88888853 33443321 22457889999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc--CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM--KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k~~ 241 (614)
+++++ +.+++++ ++|++||+||... + .+.++..+++|+.|+..+.+.+... ++-.++
T Consensus 60 vs~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~I 133 (250)
T d1ydea1 60 VTQED------DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNV 133 (250)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCCHH------HHHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCC
Confidence 99976 6666654 5899999999532 2 2557889999999999888876542 112589
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 134 i~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~a~~gIr 175 (250)
T d1ydea1 134 INISSLVGAIGQA--------------------------------------QAVPYVATKGAVTAMTKALALDESPYGVR 175 (250)
T ss_dssp EEECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred ccccccccccccc--------------------------------------CcchhHHHHhhHHHHHHHHHHHhcccCeE
Confidence 9999997632210 114799999988877766554 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+..+ ........+...+....... + .--+...+|+|++++.++.. .. --.++++
T Consensus 176 VN~I~PG~i~T~~~~---~~~~~~~~~~~~~~~~~~~~-------p--l~R~g~p~eva~~v~fL~Sd-a~--~itG~~i 240 (250)
T d1ydea1 176 VNCISPGNIWTPLWE---ELAALMPDPRASIREGMLAQ-------P--LGRMGQPAEVGAAAVFLASE-AN--FCTGIEL 240 (250)
T ss_dssp EEEEEECSBCCHHHH---HHHTTSSSHHHHHHHHHHTS-------T--TSSCBCHHHHHHHHHHHHHH-CT--TCCSCEE
T ss_pred EEEEeeCCCCChhHH---HHhhcCCCHHHHHHHHHhcC-------C--CCCCCCHHHHHHHHHHHhCc-cC--CCcCCeE
Confidence 999999988432110 00001111222222222211 0 01245678999999887753 21 2367888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.+|
T Consensus 241 ~vDGG 245 (250)
T d1ydea1 241 LVTGG 245 (250)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 88776
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=7.3e-14 Score=136.47 Aligned_cols=218 Identities=14% Similarity=0.181 Sum_probs=149.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||++|||||++.||+.++++|++.|.+ |++..|++ ++++++.+ ...++..+.+|+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~l~~~~~--------------~~~~~~~~~~Dv 59 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAK---VVAVTRTN------SDLVSLAK--------------ECPGIEPVCVDL 59 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------HSTTCEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH--------------hcCCCeEEEEeC
Confidence 57999999999999999999999999976 88888863 33443321 224578899999
Q ss_pred CCCCCCCCHHHHHHHhc---cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceEEEEe
Q psy6053 180 EADELAIKESDRQLLAS---EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELFVHIS 245 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~---~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~V~vS 245 (614)
++++ +++++++ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. + +.-.++|++|
T Consensus 60 ~~~~------~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~is 133 (242)
T d1cyda_ 60 GDWD------ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVS 133 (242)
T ss_dssp TCHH------HHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCHH------HHHHHHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccc
Confidence 9876 6777776 58999999996532 456788999999999998886643 1 2345899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|..+..... ....|+.||+..+.+.+..+. +|+++..+
T Consensus 134 S~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I 175 (242)
T d1cyda_ 134 SMVAHVTFP--------------------------------------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSV 175 (242)
T ss_dssp CGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred hhhccccCC--------------------------------------ccccccchHHHHHHHHHHHHHHhCccCeecccC
Confidence 986533211 014799999988888876654 68999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
-||.|-.+..+ ...........+.... + .--+...+|+|++++.++..... -..++++.+.+
T Consensus 176 ~PG~i~T~~~~-------~~~~~~~~~~~~~~~~-------p--l~R~~~peeva~~v~fL~S~~s~--~itG~~i~vDG 237 (242)
T d1cyda_ 176 NPTVVLTDMGK-------KVSADPEFARKLKERH-------P--LRKFAEVEDVVNSILFLLSDRSA--STSGGGILVDA 237 (242)
T ss_dssp EECCBTTHHHH-------HHTCCHHHHHHHHHHS-------T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSSEEEEST
T ss_pred CCCCccCHHHH-------hhcCCHHHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHhCchhc--CcCCceEEeCc
Confidence 99987443211 0011111122211110 0 01134578999999888754331 13678888876
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
|
T Consensus 238 G 238 (242)
T d1cyda_ 238 G 238 (242)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.53 E-value=2.8e-14 Score=141.10 Aligned_cols=233 Identities=13% Similarity=0.112 Sum_probs=146.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||++|||||++-||+.++++|++.|.+ |++..|+... ..+.+.+.+ .+. ...++.++.+|+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~---V~~~~r~~~~--~~~~~~~~~--------~~~----~g~~~~~~~~Dv 64 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGAD---IVLNGFGDAA--EIEKVRAGL--------AAQ----HGVKVLYDGADL 64 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEECCSCHH--HHHHHHHHH--------HHH----HTSCEEEECCCT
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCCcHH--HHHHHHHHH--------HHh----cCCcEEEEECCC
Confidence 57999999999999999999999999976 8888886421 112222111 111 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 65 ~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv 138 (260)
T d1x1ta1 65 SKGE------AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRII 138 (260)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEe
Confidence 9976 6666654 58999999996532 4668889999999998887765442 2345899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+.+
T Consensus 139 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIrV 180 (260)
T d1x1ta1 139 NIASAHGLVASA--------------------------------------NKSAYVAAKHGVVGFTKVTALETAGQGITA 180 (260)
T ss_dssp EECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred ecccccceeccC--------------------------------------CcchhhhhhhhHHHhHHHHHHHhchhCcEE
Confidence 999997643211 014799999988877776654 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHH-HHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLI-GAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~-~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
..+.||.|-.+..+.. ........+.-. ...+..+ .......-+...+|+|++++.++..... --.+++.
T Consensus 181 N~I~PG~i~T~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~Pl~R~g~pediA~~v~fL~S~~a~--~itG~~i 251 (260)
T d1x1ta1 181 NAICPGWVRTPLVEKQ---ISALAEKNGVDQETAARELL----SEKQPSLQFVTPEQLGGTAVFLASDAAA--QITGTTV 251 (260)
T ss_dssp EEEEECCBCC---------------------------CH----HHHCTTCCCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEecCCCCChhhhhh---hhhhhhhcCCChHHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHhChhhC--CCcCCEE
Confidence 9999998854321110 000000000000 0000000 0000001145578999999988854331 2367888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.+|
T Consensus 252 ~vDGG 256 (260)
T d1x1ta1 252 SVDGG 256 (260)
T ss_dssp EESTT
T ss_pred EECcc
Confidence 88766
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=1.7e-13 Score=133.74 Aligned_cols=214 Identities=15% Similarity=0.074 Sum_probs=145.3
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |++..|+. +++++..+. -+...+.+|+
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~---V~~~~r~~------~~l~~~~~~---------------~~~~~~~~Dv 58 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGAR---LVACDIEE------GPLREAAEA---------------VGAHPVVMDV 58 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHT---------------TTCEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH---------------cCCeEEEEec
Confidence 57899999999999999999999999976 88888863 445443221 2467889999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +++++++ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-..++
T Consensus 59 ~~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~ 132 (242)
T d1ulsa_ 59 ADPA------SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIV 132 (242)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceee
Confidence 9876 6666553 58999999996532 3568889999999999998877652 2334566
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
.+||....+.. ....|+.||+.-+.+.+..+. +|+++
T Consensus 133 ~~ss~~~~~~~---------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~gIrV 173 (242)
T d1ulsa_ 133 LTASRVYLGNL---------------------------------------GQANYAASMAGVVGLTRTLALELGRWGIRV 173 (242)
T ss_dssp EECCGGGGCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred eeccccccCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhhCcEE
Confidence 66665322110 014799999988888776544 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..+.||.|-.+... .. +...........+ .--+...+|+|+++..++..... --.+++..
T Consensus 174 N~I~PG~v~T~~~~-------~~--~~~~~~~~~~~~p---------l~R~~~pedia~~v~fL~S~~s~--~itG~~i~ 233 (242)
T d1ulsa_ 174 NTLAPGFIETRMTA-------KV--PEKVREKAIAATP---------LGRAGKPLEVAYAALFLLSDESS--FITGQVLF 233 (242)
T ss_dssp EEEEECSBCCTTTS-------SS--CHHHHHHHHHTCT---------TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCcccChhhh-------cC--CHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhchhhC--CCCCcEEE
Confidence 99999988544321 11 1122222222110 01134568999999888754331 13678888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 234 vDGG 237 (242)
T d1ulsa_ 234 VDGG 237 (242)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=4.9e-14 Score=138.83 Aligned_cols=221 Identities=14% Similarity=0.104 Sum_probs=149.6
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |++..|++ +++++..+ .+++ ...++.++.+|+
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~~~~~~~-----~l~~-----~g~~~~~~~~Dv 69 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGAS---VVVSDINA------DAANHVVD-----EIQQ-----LGGQAFACRCDI 69 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCE---EEEEESCH------HHHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHH-----cCCcEEEEEccC
Confidence 57999999999999999999999999976 88888853 23332211 1111 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
++++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|+
T Consensus 70 s~~~------~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~ 143 (255)
T d1fmca_ 70 TSEQ------ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILT 143 (255)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccccccccc
Confidence 9976 6665543 68999999996431 4668889999999999888765441 23457899
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+.-+.+.+..+. +|+.+.
T Consensus 144 isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN 185 (255)
T d1fmca_ 144 ITSMAAENKNI--------------------------------------NMTSYASSKAAASHLVRNMAFDLGEKNIRVN 185 (255)
T ss_dssp ECCGGGTCCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred ccccchhcccc--------------------------------------ccccchhHHHHHHHHHHHHHHHhCccCeEEE
Confidence 99986543211 014799999988888776654 689999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.+-||.|-.+... ....+ .......+.. + -. -+...+|+|++++.++..... --.+++..+
T Consensus 186 ~I~PG~i~T~~~~-------~~~~~-e~~~~~~~~~----p---l~--R~g~pedvA~~v~fL~S~~s~--~itG~~i~v 246 (255)
T d1fmca_ 186 GIAPGAILTDALK-------SVITP-EIEQKMLQHT----P---IR--RLGQPQDIANAALFLCSPAAS--WVSGQILTV 246 (255)
T ss_dssp EEEECSBCSHHHH-------TTCCH-HHHHHHHHTC----S---SC--SCBCHHHHHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EeeeCcCcChHhh-------ccCCH-HHHHHHHhcC----C---CC--CCcCHHHHHHHHHHHhCchhc--CCcCCEEEE
Confidence 9999988543211 11112 1222222211 0 00 134568999999988754331 136788888
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.+|
T Consensus 247 DGG 249 (255)
T d1fmca_ 247 SGG 249 (255)
T ss_dssp STT
T ss_pred CcC
Confidence 877
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.53 E-value=9.2e-14 Score=137.07 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=150.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+||||||||.||+.++++|++.|.+ |+...|++ +++++..+ .++. ...++.++.+|+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~---V~i~~r~~------~~l~~~~~-----~~~~-----~~~~~~~~~~D~ 64 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGAR---VYTCSRNE------KELDECLE-----IWRE-----KGLNVEGSVCDL 64 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHH-----TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHh-----cCCCceEEEeec
Confidence 68999999999999999999999999976 88888863 33333221 1111 335688899999
Q ss_pred CCCCCCCCHHHHHHHhc--------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS--------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~--------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +++++++ .+|+++|+|+... -.+.++..+++|+.++..+.+++... ++..++
T Consensus 65 s~~~------~~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~i 138 (258)
T d1ae1a_ 65 LSRT------ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNV 138 (258)
T ss_dssp TCHH------HHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccc
Confidence 9876 5554432 3799999999754 24678889999999999888876532 355689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.+|+.-+.+.+..+. +|+.
T Consensus 139 i~isS~~~~~~~~--------------------------------------~~~~Y~~sK~al~~lt~~lA~el~~~gIr 180 (258)
T d1ae1a_ 139 IFLSSIAGFSALP--------------------------------------SVSLYSASKGAINQMTKSLACEWAKDNIR 180 (258)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ccccccccccccc--------------------------------------cchhHHHHHHHHHHHHHHHHHhcCcCcEE
Confidence 9999997643211 125799999988888877654 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+..+. +.............+.... +- --+...+|+|++++.++..... --.++.+
T Consensus 181 vN~I~PG~i~T~~~~~---~~~~~~~~~~~~~~~~~~~-------pl--gR~~~pediA~~v~fL~S~~s~--~itG~~i 246 (258)
T d1ae1a_ 181 VNSVAPGVILTPLVET---AIKKNPHQKEEIDNFIVKT-------PM--GRAGKPQEVSALIAFLCFPAAS--YITGQII 246 (258)
T ss_dssp EEEEEECSBC----------------CHHHHHHHHHHS-------TT--CSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCcccCcchhh---hhhhhhhhHHHHHHHHhcC-------CC--CCCcCHHHHHHHHHHHhChhhC--CCcCcEE
Confidence 9999999986543211 1111111222222222211 11 1156889999999988854331 1367777
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.+|
T Consensus 247 ~vDGG 251 (258)
T d1ae1a_ 247 WADGG 251 (258)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 77765
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=6.7e-14 Score=137.51 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=148.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |.+..|+. +++++..+ .+.+. ...++.++.+|+
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~---V~i~~r~~------~~~~~~~~-----~l~~~----~g~~~~~~~~Dv 64 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCS---VVVASRNL------EEASEAAQ-----KLTEK----YGVETMAFRCDV 64 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHH----HCCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHHH----hCCcEEEEEccC
Confidence 57999999999999999999999999976 88888863 22222211 11111 235788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V 242 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. | .+-.++|
T Consensus 65 ~~~~------~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii 138 (251)
T d1vl8a_ 65 SNYE------EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSII 138 (251)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccc
Confidence 9876 6666553 58999999996432 356788999999999999887654 3 2335899
Q ss_pred EEeCceecc-CCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 243 HISTAYCHL-QEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 243 ~vST~~~~~-~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
++||..+.. ... ....|+.||+..+.+.+..+. +|+.
T Consensus 139 ~i~S~~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIr 180 (251)
T d1vl8a_ 139 NIGSLTVEEVTMP--------------------------------------NISAYAASKGGVASLTKALAKEWGRYGIR 180 (251)
T ss_dssp EECCGGGTCCCSS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred ccccchhccccCc--------------------------------------cccchHHHHHhHHHHHHHHHHHhcccCeE
Confidence 999864321 110 014799999988888776654 6999
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+..+ ...........+.+..+ .--+...+|+|++++.++..... --.++++
T Consensus 181 VN~I~PG~i~T~~~~-------~~~~~~~~~~~~~~~~p---------l~R~~~pedvA~~v~fL~S~~a~--~itG~~i 242 (251)
T d1vl8a_ 181 VNVIAPGWYRTKMTE-------AVFSDPEKLDYMLKRIP---------LGRTGVPEDLKGVAVFLASEEAK--YVTGQII 242 (251)
T ss_dssp EEEEEECCBCSTTTH-------HHHTCHHHHHHHHHTCT---------TSSCBCGGGGHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCcccCHHHH-------hccCCHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCchhC--CCcCcEE
Confidence 999999988543211 10011112222222110 01133568999999888754331 1367888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.+|
T Consensus 243 ~vDGG 247 (251)
T d1vl8a_ 243 FVDGG 247 (251)
T ss_dssp EESTT
T ss_pred EeCcC
Confidence 88766
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.2e-14 Score=140.17 Aligned_cols=233 Identities=17% Similarity=0.173 Sum_probs=149.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+||++|||||++.||+.++++|++.|.+ |++..|+. +++++... .+.+.. ...++.++.+|++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~---V~i~~r~~------~~~~~~~~-----~l~~~~---~~~~~~~~~~Dv~ 64 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAK---VALVDWNL------EAGVQCKA-----ALHEQF---EPQKTLFIQCDVA 64 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHTTTS---CGGGEEEEECCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHHhc---CCCcEEEEEeecC
Confidence 6899999999999999999999999976 88888864 22322211 111111 2257899999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc-C-----CCceEEEEeCc
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM-K-----HLELFVHISTA 247 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~-~-----~~k~~V~vST~ 247 (614)
+++ +++.+++ ++|++||+|+... ..+++..+++|+.++.++.+++... . .-.++|++||.
T Consensus 65 ~~~------~v~~~~~~~~~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~ 137 (254)
T d2gdza1 65 DQQ------QLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 137 (254)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred CHH------HHHHHHHHHHHHcCCcCeecccccccc-cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence 976 6666553 5899999999865 4567888999999988887776542 1 12469999998
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH------HhhCCCCEEEe
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE------AMNNGMPCLML 321 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~------~~~~glp~~Iv 321 (614)
.+.... | ....|+.||+..+.+.+. +..+|+++..+
T Consensus 138 ~~~~~~----------~----------------------------~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I 179 (254)
T d2gdza1 138 AGLMPV----------A----------------------------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAI 179 (254)
T ss_dssp GGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hhccCC----------C----------------------------CccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 763221 0 014799999988887653 23368999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
.||.|-.+.-+....- ++..........+.... + ..-+...+|+|++++.++.+.. ..+++..+.+
T Consensus 180 ~PG~i~T~~~~~~~~~-~~~~~~~~~~~~~~~~~----p-----~~r~~~pedvA~~v~fL~s~~~----itG~~i~VdG 245 (254)
T d2gdza1 180 CPGFVNTAILESIEKE-ENMGQYIEYKDHIKDMI----K-----YYGILDPPLIANGLITLIEDDA----LNGAIMKITT 245 (254)
T ss_dssp EESCBSSHHHHGGGCH-HHHGGGGGGHHHHHHHH----H-----HHCCBCHHHHHHHHHHHHHCTT----CSSCEEEEET
T ss_pred EcCCCCChhhhhcccc-ccccccHHHHHHHHhcC----C-----CCCCcCHHHHHHHHHHHHcCCC----CCCCEEEECC
Confidence 9998743211000000 00000000000000000 0 0013456889999999887644 3788999988
Q ss_pred CCcccccHHH
Q psy6053 402 SQEWQVSWQE 411 (614)
Q Consensus 402 ~~~~~it~~e 411 (614)
+ ..+.|+|
T Consensus 246 G--~~~~~~~ 253 (254)
T d2gdza1 246 S--KGIHFQD 253 (254)
T ss_dssp T--TEEEECC
T ss_pred C--Ceeeccc
Confidence 7 6666654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.53 E-value=3.3e-13 Score=133.83 Aligned_cols=226 Identities=15% Similarity=0.168 Sum_probs=150.8
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-++||+++||||++.||+.++++|++.|.+ |++..|+. +++++..+. + . ...++.++.+|
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~---V~i~~r~~------~~~~~~~~~-----l----~--~~~~~~~~~~D 62 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK---VVIADIAD------DHGQKVCNN-----I----G--SPDVISFVHCD 62 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHH-----H----C--CTTTEEEEECC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH-----h----c--CCCceEEEEcc
Confidence 478999999999999999999999999876 88888853 334333211 1 1 23467889999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccC-----h----hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCc
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIR-----F----DEALKKAVLLNTRGTKMMLSLAKE-M--KHLE 239 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k 239 (614)
+++++ +++.+++ ++|++||+||... + .+.++..+++|+.|+..+.+.+.. | .+-.
T Consensus 63 v~~~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g 136 (268)
T d2bgka1 63 VTKDE------DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG 136 (268)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE
T ss_pred CCCHH------HHHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCC
Confidence 99876 6666654 6899999998532 1 256788899999999999887754 2 2345
Q ss_pred eEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CC
Q psy6053 240 LFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NG 315 (614)
Q Consensus 240 ~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~g 315 (614)
++|++||..+..... +....|+.||+..+.+.+..+. +|
T Consensus 137 ~ii~iss~~~~~~~~-------------------------------------~~~~~Y~asKaal~~lt~~lA~el~~~g 179 (268)
T d2bgka1 137 SIVFTASISSFTAGE-------------------------------------GVSHVYTATKHAVLGLTTSLCTELGEYG 179 (268)
T ss_dssp EEEEECCGGGTCCCT-------------------------------------TSCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred Ccccccccccccccc-------------------------------------ccccccchhHHHHHhCHHHHHHHhChhC
Confidence 899999886532210 0113699999988888776554 68
Q ss_pred CCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+++..+.||.|-.+......+ ...........-.. .+ .--+...+|+|++++.++..... --.++
T Consensus 180 IrVN~I~PG~i~T~~~~~~~~------~~~~~~~~~~~~~~-----~~--~gr~~~pedvA~~v~fL~S~~s~--~itGq 244 (268)
T d2bgka1 180 IRVNCVSPYIVASPLLTDVFG------VDSSRVEELAHQAA-----NL--KGTLLRAEDVADAVAYLAGDESK--YVSGL 244 (268)
T ss_dssp EEEEEEEESCCSCCCCTTSSS------CCHHHHHHHHHHTC-----SS--CSCCCCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred eEEEecCCCCccChHHhhhhc------CCHHHHHHHHHhcc-----cc--CCCCcCHHHHHHHHHHHhChhhC--CccCc
Confidence 999999999886543221111 11111111111000 00 01245679999999988854331 23688
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++.+.+|
T Consensus 245 ~i~VDGG 251 (268)
T d2bgka1 245 NLVIDGG 251 (268)
T ss_dssp EEEESTT
T ss_pred eEEECcC
Confidence 8888777
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.52 E-value=9.9e-14 Score=136.84 Aligned_cols=230 Identities=14% Similarity=0.100 Sum_probs=149.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++-||+.++++|++.|.+ |++..|+. +++++..+ .+.+.. ...++..+.+|+
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~---V~i~~r~~------~~l~~~~~-----~~~~~~---~~~~~~~~~~Dv 64 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAK---LSLVDVSS------EGLEASKA-----AVLETA---PDAEVLTTVADV 64 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHHC---TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHhhC---CCCeEEEEeccC
Confidence 57999999999999999999999999976 88888864 22322211 111111 225789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +.+.+++ .+|++||+||... + .+.++..+++|+.|+..+.+.+... ++-.++
T Consensus 65 t~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~I 138 (258)
T d1iy8a_ 65 SDEA------QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMV 138 (258)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCC
Confidence 9976 6666653 5899999998532 2 3567889999999999998876431 244689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 139 i~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIr 180 (258)
T d1iy8a_ 139 VNTASVGGIRGIG--------------------------------------NQSGYAAAKHGVVGLTRNSAVEYGRYGIR 180 (258)
T ss_dssp EEECCGGGTSBCS--------------------------------------SBHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred cccccHhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhCccCce
Confidence 9999987632210 015799999988877766544 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+.||.|-.+..+......+. ..+......+.... + ..-+...+|+|++++.++..... --.+++.
T Consensus 181 VN~i~PG~v~T~~~~~~~~~~~~-~~~~~~~~~~~~~~-------p--l~R~~~p~dvA~~v~fL~S~~s~--~itG~~i 248 (258)
T d1iy8a_ 181 INAIAPGAIWTPMVENSMKQLDP-ENPRKAAEEFIQVN-------P--SKRYGEAPEIAAVVAFLLSDDAS--YVNATVV 248 (258)
T ss_dssp EEEEEECSBCSHHHHHHHHHHCT-TCHHHHHHHHHTTC-------T--TCSCBCHHHHHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEEeeCcccCHHHHHHHhhcCc-ccHHHHHHHHHhcC-------C--CCCCcCHHHHHHHHHHHhCchhc--CCcCceE
Confidence 99999998843311000000000 01111222222111 0 01134578999999888854331 2367788
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.+|
T Consensus 249 ~VDGG 253 (258)
T d1iy8a_ 249 PIDGG 253 (258)
T ss_dssp EESTT
T ss_pred EcCcc
Confidence 88776
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.52 E-value=9.6e-14 Score=137.16 Aligned_cols=223 Identities=14% Similarity=0.085 Sum_probs=148.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |++..|.+.. ..+.+.+. +++ ...++..+.+|+
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~~---Vv~~~r~~~~--~~~~~~~~--------~~~-----~g~~~~~~~~Dv 66 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKAK---VVVNYRSKED--EANSVLEE--------IKK-----VGGEAIAVKGDV 66 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHH--------HHH-----TTCEEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCcHH--HHHHHHHH--------HHh-----cCCcEEEEEccC
Confidence 68999999999999999999999999876 8888886421 11222211 111 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~ 241 (614)
++++ +.+++++ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. | +.-..+
T Consensus 67 t~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~I 140 (261)
T d1geea_ 67 TVES------DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTV 140 (261)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccc
Confidence 9976 6666554 58999999997542 356788999999999888776643 2 223458
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 141 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIr 182 (261)
T d1geea_ 141 INMSSVHEKIPWP--------------------------------------LFVHYAASKGGMKLMTETLALEYAPKGIR 182 (261)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred cccccchhcccCc--------------------------------------cccccccCCccchhhHHHHHHHhhhhCcE
Confidence 8999987532210 014799999988887776554 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+-||.|-.+... ...........+.+.. + .--+...+|+|++++.++..... -..++++
T Consensus 183 VN~I~PG~v~T~~~~-------~~~~~~~~~~~~~~~~-------p--l~R~~~pediA~~v~fL~S~~s~--~itG~~i 244 (261)
T d1geea_ 183 VNNIGPGAINTPINA-------EKFADPEQRADVESMI-------P--MGYIGEPEEIAAVAAWLASSEAS--YVTGITL 244 (261)
T ss_dssp EEEEEECSBCSGGGH-------HHHHSHHHHHHHHTTC-------T--TSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCcCcCHhHh-------hhcCCHHHHHHHHhcC-------C--CCCCCCHHHHHHHHHHHhCchhc--CCcCCeE
Confidence 999999988543210 0000011111111110 0 01134679999999988854331 1368888
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
.+.+|
T Consensus 245 ~vDGG 249 (261)
T d1geea_ 245 FADGG 249 (261)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 88877
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=1.3e-13 Score=136.13 Aligned_cols=221 Identities=15% Similarity=0.131 Sum_probs=137.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++-||+.++++|++.|.+ |++..|++ +++++..+ .+. . ...++..+.+|+
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga~---V~~~~r~~------~~l~~~~~-----~~~----~-~~~~~~~~~~Dv 66 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAV---IHTCARNE------YELNECLS-----KWQ----K-KGFQVTGSVCDA 66 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----H-TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCceEEEeccC
Confidence 47999999999999999999999999975 88888863 33333221 111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc--------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS--------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~--------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++
T Consensus 67 ~~~~------~v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~I 140 (259)
T d1xq1a_ 67 SLRP------EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNI 140 (259)
T ss_dssp TSHH------HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccc
Confidence 9865 5544432 48999999997542 3667889999999999888876542 244689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 141 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIr 182 (259)
T d1xq1a_ 141 IFMSSIAGVVSAS--------------------------------------VGSIYSATKGALNQLARNLACEWASDGIR 182 (259)
T ss_dssp EEEC------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred ccccccccccccc--------------------------------------ccccccccccchhhhhHHHHHHhcccCeE
Confidence 9999987532210 015799999988887766554 7899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEE
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIV 397 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vy 397 (614)
+..+-||.|-.+..+ +.... ........ ..+ .--+...+|+|++++.++..... --.+++.
T Consensus 183 VN~V~PG~i~T~~~~-------~~~~~-~~~~~~~~----~~p-----l~R~~~pedvA~~v~fL~S~~s~--~iTG~~i 243 (259)
T d1xq1a_ 183 ANAVAPAVIATPLAE-------AVYDD-EFKKVVIS----RKP-----LGRFGEPEEVSSLVAFLCMPAAS--YITGQTI 243 (259)
T ss_dssp EEEEECCSCC------------------------------------------CCGGGGHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEeccCcccCHHhh-------hhchH-HHHHHHHh----CCC-----CCCCcCHHHHHHHHHHHhCchhc--CCcCcEE
Confidence 999999988443211 00000 00000000 000 01133468999999888754321 1367788
Q ss_pred EeccC
Q psy6053 398 HLTSS 402 (614)
Q Consensus 398 ni~~~ 402 (614)
++.+|
T Consensus 244 ~vDGG 248 (259)
T d1xq1a_ 244 CVDGG 248 (259)
T ss_dssp ECCCC
T ss_pred EeCCC
Confidence 77666
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.52 E-value=1.1e-13 Score=136.01 Aligned_cols=220 Identities=11% Similarity=0.109 Sum_probs=149.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
+++|+++||||+|.||+.++++|++.|.+ |++..|++ +++++..+ .++ + ...++..+.+|+
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga~---V~~~~r~~------~~l~~~~~-----~l~----~-~g~~~~~~~~Dv 68 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVSH---VICISRTQ------KSCDSVVD-----EIK----S-FGYESSGYAGDV 68 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSE---EEEEESSH------HHHHHHHH-----HHH----T-TTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCcEEEEEccC
Confidence 46899999999999999999999999876 88888853 23332211 111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFV 242 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V 242 (614)
++++ +.+.+++ .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 69 t~~~------~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IV 142 (251)
T d2c07a1 69 SKKE------EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRII 142 (251)
T ss_dssp TCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEE
Confidence 9976 6666654 68999999997432 3678889999999998888765431 2446899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCE
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPC 318 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~ 318 (614)
++||..+..... ....|+.||+..+.+.+..+. +|+++
T Consensus 143 nisS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltr~lA~el~~~gIrV 184 (251)
T d2c07a1 143 NISSIVGLTGNV--------------------------------------GQANYSSSKAGVIGFTKSLAKELASRNITV 184 (251)
T ss_dssp EECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHhcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999987642210 014799999988888877654 68999
Q ss_pred EEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 319 LMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 319 ~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
..+.||.|-.+..+ .. +......+.... +- --+...+|+|++++.++..... --.+++.+
T Consensus 185 N~V~PG~v~T~~~~-------~~--~~~~~~~~~~~~-------pl--~R~~~pedvA~~v~fL~S~~s~--~itG~~i~ 244 (251)
T d2c07a1 185 NAIAPGFISSDMTD-------KI--SEQIKKNIISNI-------PA--GRMGTPEEVANLACFLSSDKSG--YINGRVFV 244 (251)
T ss_dssp EEEEECSBCC------------C--CHHHHHHHHTTC-------TT--SSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEccCCEeccccc-------cc--CHHHHHHHHhcC-------CC--CCCcCHHHHHHHHHHHhCchhC--CCcCcEEE
Confidence 99999988544221 11 112222222211 00 1145678999999888754431 13677888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 245 vDGG 248 (251)
T d2c07a1 245 IDGG 248 (251)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 7665
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.51 E-value=9.2e-14 Score=137.18 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=148.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++-||+.++++|++.|.+ |++..|++ +++++..+ .++ + ...++.++.+|+
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~l~~~~~-----~~~----~-~g~~~~~~~~Dv 66 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGAS---VYTCSRNQ------KELNDCLT-----QWR----S-KGFKVEASVCDL 66 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----H-TTCEEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCCceEEEeeC
Confidence 57999999999999999999999999876 88888853 33433321 111 1 335788999999
Q ss_pred CCCCCCCCHHHHHHHhc--------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS--------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~--------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++
T Consensus 67 ~~~~------~v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~I 140 (259)
T d2ae2a_ 67 SSRS------ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNV 140 (259)
T ss_dssp TCHH------HHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccc
Confidence 9876 5554432 48999999996532 3567889999999999888876542 344689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 141 i~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIr 182 (259)
T d2ae2a_ 141 VFISSVSGALAVP--------------------------------------YEAVYGATKGAMDQLTRCLAFEWAKDNIR 182 (259)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred ccccccccccccc--------------------------------------cccchHHHHHHHHHHHHHHHHHhCcCceE
Confidence 9999987632210 115799999988888776654 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCch--HHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGP--TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~--~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+..+.||.|-.+..+. ....+ ...+..+.... +- --+...+|+|++++.++..... --.++
T Consensus 183 VN~I~PG~i~T~~~~~------~~~~~~~~~~~~~~~~~~-------pl--~R~g~pedvA~~v~fL~S~~s~--~itG~ 245 (259)
T d2ae2a_ 183 VNGVGPGVIATSLVEM------TIQDPEQKENLNKLIDRC-------AL--RRMGEPKELAAMVAFLCFPAAS--YVTGQ 245 (259)
T ss_dssp EEEEEECSBCSHHHHH------HTTSHHHHHHHHHHHHTS-------TT--CSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEeeeCcccCHHHHh------hhhchhhHHHHHHHHhcC-------CC--CCCcCHHHHHHHHHHHhCchhC--CCcCc
Confidence 9999999884432100 00111 11222222211 00 1134568999999888754331 13678
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++.+.+|
T Consensus 246 ~i~VDGG 252 (259)
T d2ae2a_ 246 IIYVDGG 252 (259)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 8888766
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.5e-13 Score=135.59 Aligned_cols=230 Identities=14% Similarity=0.141 Sum_probs=149.8
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..++||+++||||++.||+.+++.|++.|.+ |++..|+. +++++..+ .+....+.....++..+.+
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga~---Vvi~~r~~------~~l~~~~~-----el~~~~~~~~~~~~~~~~~ 73 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGSN---VVIASRKL------ERLKSAAD-----ELQANLPPTKQARVIPIQC 73 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHTSCTTCCCCEEEEEC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHhhhccccCceEEEEec
Confidence 3478999999999999999999999999976 88888864 23332211 2222222213457999999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
|+++++ +.+.+++ ++|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-..
T Consensus 74 Dvs~~~------~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ 147 (297)
T d1yxma1 74 NIRNEE------EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGS 147 (297)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEE
T ss_pred cCCCHH------HHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccc
Confidence 999976 6666553 68999999996432 3668889999999999998877542 13346
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+|.+|++...+. +....|+.||+..+.+.+..+. +|+
T Consensus 148 Ii~~ss~~~~~~---------------------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gI 188 (297)
T d1yxma1 148 IVNIIVPTKAGF---------------------------------------PLAVHSGAARAGVYNLTKSLALEWACSGI 188 (297)
T ss_dssp EEEECCCCTTCC---------------------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTE
T ss_pred cccccccccccc---------------------------------------cccccchhHHHHHHHHHHHHHHHhcccCc
Confidence 777766532111 0125799999988888776654 689
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
.+..+.||.|..+.. .+.. +... ...........+ .--+...+|+|++++.++..... --.+++
T Consensus 189 rVN~I~PG~i~T~~~------~~~~-~~~~--~~~~~~~~~~~p-----lgR~g~pedvA~~v~fL~Sd~s~--~iTG~~ 252 (297)
T d1yxma1 189 RINCVAPGVIYSQTA------VENY-GSWG--QSFFEGSFQKIP-----AKRIGVPEEVSSVVCFLLSPAAS--FITGQS 252 (297)
T ss_dssp EEEEEEECSBCCTGG------GTTS-GGGG--GGGGTTGGGGST-----TSSCBCTHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred eEEEeeeCcCcCcch------hhhc-cccC--HHHHHHHHhcCC-----CCCCcCHHHHHHHHHHHhCchhc--CcCCcE
Confidence 999999998854421 1111 0000 000111111000 01134568999999988854332 237889
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
..+.+|
T Consensus 253 i~VDGG 258 (297)
T d1yxma1 253 VDVDGG 258 (297)
T ss_dssp EEESTT
T ss_pred EEeCcC
Confidence 988877
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.50 E-value=2.3e-13 Score=133.68 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=147.8
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-++||+++||||++.||+.++++|++.|.+ |++..|+. +++++..+ .+. ...++.++.+|
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~D 62 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK---VMITGRHS------DVGEKAAK-----SVG------TPDQIQFFQHD 62 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHC------CTTTEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HhC------CCCcEEEEEcc
Confidence 368999999999999999999999999976 88888853 23333211 010 23578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-cC--CC-ce
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-MK--HL-EL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~--~~-k~ 240 (614)
+++++ +.+.+++ ++|++||+|+.... .+.++..+++|+.|+..+.+.+.. |. +- .+
T Consensus 63 v~~~~------~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~ 136 (251)
T d1zk4a1 63 SSDED------GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGAS 136 (251)
T ss_dssp TTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEE
T ss_pred CCCHH------HHHHHHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCc
Confidence 99976 6665554 58999999997532 466788999999999999887654 22 22 37
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh------hC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM------NN 314 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~------~~ 314 (614)
+|++||..+.... | ....|+.||+..+.+.+..+ ++
T Consensus 137 Ii~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~lt~~lA~e~~l~~~ 178 (251)
T d1zk4a1 137 IINMSSIEGFVGD----------P----------------------------SLGAYNASKGAVRIMSKSAALDCALKDY 178 (251)
T ss_dssp EEEECCGGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEeeeccceeccC----------C----------------------------CchhHHHHHHHHhcchHHHHHHHhcCCC
Confidence 8999998753221 0 01479999998887766432 25
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+.+..+.||.|-.+..+ ....+... ...... . + .--+...+|+|++++.++..... --.+
T Consensus 179 gIrVN~I~PG~i~T~~~~-------~~~~~~~~-~~~~~~----~---p--l~R~~~pedvA~~v~fL~S~~s~--~itG 239 (251)
T d1zk4a1 179 DVRVNTVHPGYIKTPLVD-------DLPGAEEA-MSQRTK----T---P--MGHIGEPNDIAYICVYLASNESK--FATG 239 (251)
T ss_dssp SEEEEEEEECCBCCHHHH-------TSTTHHHH-HTSTTT----C---T--TSSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred cEEEEEEeCCCCCChhHH-------hcCCHHHH-HHHHhC----C---C--CCCCcCHHHHHHHHHHHhCchhC--CCcC
Confidence 899999999988543211 11111111 000000 0 0 01145679999999888754331 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++++.+|
T Consensus 240 ~~i~vDGG 247 (251)
T d1zk4a1 240 SEFVVDGG 247 (251)
T ss_dssp CEEEESTT
T ss_pred cEEEECcc
Confidence 88888766
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.49 E-value=6.9e-13 Score=129.34 Aligned_cols=216 Identities=15% Similarity=0.130 Sum_probs=146.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++|||||+.||+.++++|++.|.+ |++..|+. +++++..+. ...++.++++|+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~---V~~~~r~~------~~~~~~~~~-------------~~~~~~~~~~Dl 60 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGAS---LVAVDREE------RLLAEAVAA-------------LEAEAIAVVADV 60 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHT-------------CCSSEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH-------------cCCceEEEEecC
Confidence 67999999999999999999999999976 88888864 334433221 346788999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++++ +.+++++ ++|++||+|+.... .+.++..+++|+.++..+.+.+... .+-+.++.+
T Consensus 61 s~~~------~i~~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ 134 (241)
T d2a4ka1 61 SDPK------AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT 134 (241)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeec
Confidence 9876 6666554 58999999986432 3557788999999999999887653 233445555
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||.+..... . ...|+.+|+.-|.+.+..+. +|+.+..
T Consensus 135 ss~a~~~~~----------------------------------~-----~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~ 175 (241)
T d2a4ka1 135 GSVAGLGAF----------------------------------G-----LAHYAAGKLGVVGLARTLALELARKGVRVNV 175 (241)
T ss_dssp CCCTTCCHH----------------------------------H-----HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEE
T ss_pred ccccccccc----------------------------------C-----ccccchhhHHHHHHHHHHHHHHhHhCCEEee
Confidence 554321110 0 14699999999988887765 6899999
Q ss_pred eecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEec
Q psy6053 321 LRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLT 400 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~ 400 (614)
+.||.|-.+.. .+. +........+.. + .--+...||+|+++..++..... --.+++..+.
T Consensus 176 I~PG~v~T~~~-------~~~--~~~~~~~~~~~~-------p--~~r~~~p~dva~~v~fL~S~~s~--~itG~~i~vD 235 (241)
T d2a4ka1 176 LLPGLIQTPMT-------AGL--PPWAWEQEVGAS-------P--LGRAGRPEEVAQAALFLLSEESA--YITGQALYVD 235 (241)
T ss_dssp EEECSBCCGGG-------TTS--CHHHHHHHHHTS-------T--TCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred eccCcCCCHHH-------Hhh--hHhHHHHHHhCC-------C--CCCCcCHHHHHHHHHHHhcchhC--CCcCceEEeC
Confidence 99998843321 111 122222222211 0 01144679999999998854432 1367777777
Q ss_pred cC
Q psy6053 401 SS 402 (614)
Q Consensus 401 ~~ 402 (614)
+|
T Consensus 236 GG 237 (241)
T d2a4ka1 236 GG 237 (241)
T ss_dssp TT
T ss_pred CC
Confidence 66
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.49 E-value=9.1e-14 Score=137.31 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=123.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.+++.|++.|.+ |++..|++ +++++..+ .++ + ...++..+.+|+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~l~~~~~-----~~~----~-~g~~~~~~~~Dv 63 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTA---IALLDMNR------EALEKAEA-----SVR----E-KGVEARSYVCDV 63 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----T-TTSCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCcEEEEEccC
Confidence 68999999999999999999999999976 88888863 33332211 111 1 335789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~ 241 (614)
++++ +.+.+++ ++|++||+||... + .+.++..+++|+.|+..+.+.+.. | .+-.++
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~I 137 (260)
T d1zema1 64 TSEE------AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRI 137 (260)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCC
Confidence 9866 6665553 5899999998642 2 356788999999999988887654 2 244689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 138 I~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIr 179 (260)
T d1zema1 138 VNTASMAGVKGPP--------------------------------------NMAAYGTSKGAIIALTETAALDLAPYNIR 179 (260)
T ss_dssp EEECCHHHHSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred CeeechhhccCCc--------------------------------------chHHHHHHHHHHHHHHHHHHHHhhhhCCE
Confidence 9999986533210 014799999988887766554 6899
Q ss_pred EEEeecceeec
Q psy6053 318 CLMLRPSIIIP 328 (614)
Q Consensus 318 ~~IvRp~~I~g 328 (614)
+..+.||.|-.
T Consensus 180 VN~I~PG~v~T 190 (260)
T d1zema1 180 VNAISPGYMGP 190 (260)
T ss_dssp EEEEEECSBCS
T ss_pred EEEeccCcccC
Confidence 99999998854
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.49 E-value=3.6e-13 Score=132.33 Aligned_cols=223 Identities=12% Similarity=0.073 Sum_probs=146.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-++||+++||||++.||+.++++|++.|.+ |++..|++ ++++++.+ + ...+..++.+|
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~---V~~~~~~~------~~~~~~~~---------~----~~~~~~~~~~D 60 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK---VAFSDINE------AAGQQLAA---------E----LGERSMFVRHD 60 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEECSCH------HHHHHHHH---------H----HCTTEEEECCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH---------H----hCCCeEEEEee
Confidence 478999999999999999999999999976 77887753 33333321 1 23467889999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c-CCCceEE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M-KHLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~-~~~k~~V 242 (614)
+++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. | ++-.++|
T Consensus 61 v~~~~------~~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv 134 (253)
T d1hxha_ 61 VSSEA------DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSII 134 (253)
T ss_dssp TTCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCHH------HHHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCcee
Confidence 99865 6665553 58999999997532 366888999999999988877655 2 1236899
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCC
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGM 316 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~gl 316 (614)
++||..+..... ....|+.||+..+.+.+..+. .++
T Consensus 135 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~g~~I 176 (253)
T d1hxha_ 135 NMASVSSWLPIE--------------------------------------QYAGYSASKAAVSALTRAAALSCRKQGYAI 176 (253)
T ss_dssp EECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred cccchhhhcCcc--------------------------------------ccccccchhHHHHHHHHHHHHHHhhcCCCE
Confidence 999987632210 014799999988887765442 248
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++..+-||.|-.+... .+.+.-.. ........ .....-.+...+|+|++++.++..... --.+++
T Consensus 177 rVN~I~PG~i~T~~~~---~~~~~~~~-----~~~~~~~~-----~~~~~gr~~~pedvA~~v~fL~S~~s~--~itG~~ 241 (253)
T d1hxha_ 177 RVNSIHPDGIYTPMMQ---ASLPKGVS-----KEMVLHDP-----KLNRAGRAYMPERIAQLVLFLASDESS--VMSGSE 241 (253)
T ss_dssp EEEEEEESEECCHHHH---HHSCTTCC-----HHHHBCBT-----TTBTTCCEECHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEeECCCcCHhHH---hhCcchhh-----HHHHHhCc-----cccccCCCCCHHHHHHHHHHHhChhhC--CCcCcE
Confidence 8999999988543110 00000000 00000000 000011245679999999988754331 136788
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
.++.++
T Consensus 242 i~VDGG 247 (253)
T d1hxha_ 242 LHADNS 247 (253)
T ss_dssp EEESSS
T ss_pred EEECcc
Confidence 888765
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.47 E-value=5.9e-13 Score=131.38 Aligned_cols=227 Identities=12% Similarity=0.060 Sum_probs=147.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||++|||||++.||+.++++|++.|.+ |++..|+.... .+..+++.+ + ...++..+.+|+
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga~---V~i~~r~~~~~--~~~~~~~~~---------~----~g~~~~~~~~Dv 68 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGAN---VAVIYRSAADA--VEVTEKVGK---------E----FGVKTKAYQCDV 68 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEE---EEEEESSCTTH--HHHHHHHHH---------H----HTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCHHHH--HHHHHHHHH---------H----hCCceEEEEccC
Confidence 67999999999999999999999999876 88889976442 222222211 1 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELF 241 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~ 241 (614)
++++ +.+++++ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. | ..-..+
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i 142 (260)
T d1h5qa_ 69 SNTD------IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSI 142 (260)
T ss_dssp TCHH------HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEE
Confidence 9976 6666653 58999999986431 356788999999999888776543 1 344456
Q ss_pred EEEeCceeccCCc-ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 242 VHISTAYCHLQEK-VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 242 V~vST~~~~~~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
+.+||........ .+. +. .....|+.||+..+.+.+..+. +|+
T Consensus 143 ~~~~s~~~~~~~~~~~~----~~----------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gI 190 (260)
T d1h5qa_ 143 VVTSSMSSQIINQSSLN----GS----------------------------LTQVFYNSSKAACSNLVKGLAAEWASAGI 190 (260)
T ss_dssp EEECCGGGTSCCEEETT----EE----------------------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEeeccccccccccccc----cC----------------------------ccccchhhhhhhHHHHHHHHHHHhchhCe
Confidence 6666664432211 000 00 1124799999988888776554 689
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++..+.||.|-.+.. .+. +........... + -. -+.-.+|+|++++.++..... --.+++
T Consensus 191 rvN~I~PG~i~T~~~----~~~-----~~~~~~~~~~~~----p---l~--R~g~pedvA~~v~fL~S~~s~--~itG~~ 250 (260)
T d1h5qa_ 191 RVNALSPGYVNTDQT----AHM-----DKKIRDHQASNI----P---LN--RFAQPEEMTGQAILLLSDHAT--YMTGGE 250 (260)
T ss_dssp EEEEEEECSBCCGGG----GGS-----CHHHHHHHHHTC----T---TS--SCBCGGGGHHHHHHHHSGGGT--TCCSCE
T ss_pred EEeecCCCcccCcch----hcc-----CHHHHHHHHhcC----C---CC--CCcCHHHHHHHHHHHhcchhC--CCcCce
Confidence 999999998844321 111 112222222211 0 00 134568899999888754331 136788
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+.+.+|
T Consensus 251 i~VDGG 256 (260)
T d1h5qa_ 251 YFIDGG 256 (260)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 888776
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.3e-13 Score=132.98 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=121.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
-.+||+++||||++-||+.++++|++.|.+ |++..|++ ++++++.+ .+. + ...++..+.+|
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~---V~l~~r~~------~~l~~~~~-----~~~----~-~~~~~~~~~~D 64 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSK---LVLWDINK------HGLEETAA-----KCK----G-LGAKVHTFVVD 64 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----H-TTCCEEEEECC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCcEEEEEee
Confidence 467999999999999999999999999876 88999964 34443321 111 1 34578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~ 241 (614)
+++++ +.+.+++ .+|++||+||.... .+.++..+++|+.|+.++.+.+.. | .+-.++
T Consensus 65 vs~~~------~v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~I 138 (244)
T d1yb1a_ 65 CSNRE------DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHI 138 (244)
T ss_dssp TTCHH------HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceE
Confidence 99976 5555543 58999999997532 345678899999999888876544 2 345689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-------C
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-------N 314 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-------~ 314 (614)
|++||..+..... . ...|+.||+.-+.+.+..+. .
T Consensus 139 v~isS~~~~~~~~---~-----------------------------------~~~Y~asKaal~~~~~~La~El~~~~~~ 180 (244)
T d1yb1a_ 139 VTVASAAGHVSVP---F-----------------------------------LLAYCSSKFAAVGFHKTLTDELAALQIT 180 (244)
T ss_dssp EEECCCC-CCCHH---H-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred EEeecchhcCCCC---C-----------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999997643211 0 14799999987766665442 3
Q ss_pred CCCEEEeecceee
Q psy6053 315 GMPCLMLRPSIII 327 (614)
Q Consensus 315 glp~~IvRp~~I~ 327 (614)
|+.+..+.||.|-
T Consensus 181 gI~V~~i~PG~v~ 193 (244)
T d1yb1a_ 181 GVKTTCLCPNFVN 193 (244)
T ss_dssp TEEEEEEEETHHH
T ss_pred CEEEEEEEcCCCC
Confidence 7999999999773
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.47 E-value=5e-13 Score=133.12 Aligned_cols=226 Identities=17% Similarity=0.162 Sum_probs=144.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |++..|+. ++++++.+. ...++..+.+|+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~---V~i~~r~~------~~l~~~~~~-------------~~~~~~~~~~Dv 60 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAK---VAVLDKSA------ERLAELETD-------------HGDNVLGIVGDV 60 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHH-------------HGGGEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH-------------cCCCeeEEeccc
Confidence 57999999999999999999999999976 88888863 455543221 235789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh------------hHHHHHHHHHhHHHHHHHHHHHHHc--CCC
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF------------DEALKKAVLLNTRGTKMMLSLAKEM--KHL 238 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~ 238 (614)
++++ +.+.+++ .+|++||+||.... ++.++..+++|+.|+..+.+.+... ++-
T Consensus 61 ~~~~------~~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~ 134 (276)
T d1bdba_ 61 RSLE------DQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR 134 (276)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred ccHH------HHHHHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9976 5665543 68999999986421 2347888999999998888776431 122
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---CC
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---NG 315 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---~g 315 (614)
.++|++||..+.... | ....|+.||+..+.+.+..+. .+
T Consensus 135 g~iI~i~S~~~~~~~----------~----------------------------~~~~Y~asKaal~~ltr~lA~ela~~ 176 (276)
T d1bdba_ 135 GNVIFTISNAGFYPN----------G----------------------------GGPLYTAAKHAIVGLVRELAFELAPY 176 (276)
T ss_dssp CEEEEECCGGGTSTT----------S----------------------------SCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCceeeeechhccCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhhcc
Confidence 578888887543211 0 014699999988888776654 46
Q ss_pred CCEEEeecceeecccCCCCccccCCC-CchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh-hhhcCCCC
Q psy6053 316 MPCLMLRPSIIIPVWREPLPGWTDNI-NGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA-YLSQKEHR 393 (614)
Q Consensus 316 lp~~IvRp~~I~g~~~~p~~gw~d~~-~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~-~~~~~~~~ 393 (614)
+++..+.||.|-.+...+...+.... .....+...+.. ..+ .--+...+|+|++++.++.. ... --.
T Consensus 177 IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P--------lgR~g~peeva~~v~fL~S~~~a~--~it 245 (276)
T d1bdba_ 177 VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKS-VLP--------IGRMPEVEEYTGAYVFFATRGDAA--PAT 245 (276)
T ss_dssp CEEEEEEECCCCSCCCCCGGGC---------CHHHHHTT-TCT--------TSSCCCGGGGSHHHHHHHCHHHHT--TCS
T ss_pred eEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHh-cCC--------CCCCcCHHHHHHHHHHHcCCcccC--Cee
Confidence 99999999988544322211111100 000011111111 100 00134468899998877632 221 136
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
++++++.+|
T Consensus 246 G~~i~VDGG 254 (276)
T d1bdba_ 246 GALLNYDGG 254 (276)
T ss_dssp SCEEEESSS
T ss_pred CcEEEECcC
Confidence 889988776
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.46 E-value=3.3e-13 Score=133.52 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=142.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++-||+.++++|++.|.+ |++..|+. +++++..+ .+++.. . ...++.++.+|+
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~l~~~~~-----~l~~~~-~-~~~~~~~~~~Dv 66 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAK---VTITGRHA------ERLEETRQ-----QILAAG-V-SEQNVNSVVADV 66 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHTT-C-CGGGEEEEECCT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHhcC-C-CcCceEEEEccC
Confidence 67999999999999999999999999976 88888864 23332211 111111 0 235799999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-----------hhHHHHHHHHHhHHHHHHHHHHHHHc--CCCc
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-----------FDEALKKAVLLNTRGTKMMLSLAKEM--KHLE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-----------~~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k 239 (614)
++++ +.+++++ ++|++||+||... ..+.++..+++|+.|+..+.+.+..+ ++-.
T Consensus 67 t~~~------~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g 140 (264)
T d1spxa_ 67 TTDA------GQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKG 140 (264)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccC
Confidence 9876 6666654 5899999998632 12457788999999998888776542 1224
Q ss_pred eEEEEeCcee-ccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 240 LFVHISTAYC-HLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 240 ~~V~vST~~~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.+|.++|..+ .... |. ...|+.||+.-+.+.+..+. +
T Consensus 141 ~iI~~~S~~~~~~~~----------~~----------------------------~~~Y~asKaal~~lt~~lA~el~~~ 182 (264)
T d1spxa_ 141 EIVNISSIASGLHAT----------PD----------------------------FPYYSIAKAAIDQYTRNTAIDLIQH 182 (264)
T ss_dssp EEEEECCTTSSSSCC----------TT----------------------------SHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cceeeeeeccccccC----------CC----------------------------chhhhhhhhhHHHHHHHHHHHhccc
Confidence 6666666532 1110 00 14699999988887766554 6
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++..+.||.|-.+.........+................ +- --+...+|+|++++.++..+..+ --.+
T Consensus 183 gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Pl--~R~g~pedvA~~v~fL~S~~~s~-~itG 252 (264)
T d1spxa_ 183 GIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECV-------PA--GVMGQPQDIAEVIAFLADRKTSS-YIIG 252 (264)
T ss_dssp TCEEEEEEECCBCCCC--------------HHHHHHHHHHC-------TT--SSCBCHHHHHHHHHHHHCHHHHT-TCCS
T ss_pred CeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcC-------CC--CCCcCHHHHHHHHHHHhCCcccC-CccC
Confidence 99999999998854322110000000000011111111100 00 01345689999999887533210 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++.+.+|
T Consensus 253 ~~i~vDGG 260 (264)
T d1spxa_ 253 HQLVVDGG 260 (264)
T ss_dssp CEEEESTT
T ss_pred ceEEeCCC
Confidence 88888766
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.46 E-value=5.8e-13 Score=131.03 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=143.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|.+|||||++.||+.++++|++.|.+ |++..|++ +++++..+ .++ + ...++.++.+|++++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~l~~~~~-----~i~----~-~g~~~~~~~~Dv~~~ 62 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFA---VAIADYND------ATAKAVAS-----EIN----Q-AGGHAVAVKVDVSDR 62 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----H-TTCCEEEEECCTTSH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCcEEEEEeeCCCH
Confidence 56799999999999999999999976 88888863 33333211 111 1 335789999999997
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c---CCCceEEEE
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M---KHLELFVHI 244 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~---~~~k~~V~v 244 (614)
+ +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+.. + ++-.+++++
T Consensus 63 ~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~i 136 (255)
T d1gega_ 63 D------QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINA 136 (255)
T ss_dssp H------HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred H------HHHHHHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccc
Confidence 6 6666543 58999999996432 366788999999999998877543 2 234579999
Q ss_pred eCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEE
Q psy6053 245 STAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLM 320 (614)
Q Consensus 245 ST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~I 320 (614)
||..+..... ....|+.||+.-+.+.+..+. +|+++..
T Consensus 137 sS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~ 178 (255)
T d1gega_ 137 CSQAGHVGNP--------------------------------------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNG 178 (255)
T ss_dssp CCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred cchhhcccCc--------------------------------------ccccchhCHHHHHhhHHHHHHHhhhhCcEEEE
Confidence 9986532211 014799999988888776554 6899999
Q ss_pred eecceeecccCCCCcccc-CCCCc-hHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEE
Q psy6053 321 LRPSIIIPVWREPLPGWT-DNING-PTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVH 398 (614)
Q Consensus 321 vRp~~I~g~~~~p~~gw~-d~~~g-~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyn 398 (614)
+.||.|-.+......... +.... .......+.+.. ..--+...+|+|++++.++..... -..++++.
T Consensus 179 I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------pl~R~~~peevA~~v~fL~S~~a~--~itG~~i~ 247 (255)
T d1gega_ 179 YCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI---------TLGRLSEPEDVAACVSYLASPDSD--YMTGQSLL 247 (255)
T ss_dssp EEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhC--CccCcEEE
Confidence 999987332100000000 00000 000011111110 001145579999999988854331 13677888
Q ss_pred eccC
Q psy6053 399 LTSS 402 (614)
Q Consensus 399 i~~~ 402 (614)
+.+|
T Consensus 248 vDGG 251 (255)
T d1gega_ 248 IDGG 251 (255)
T ss_dssp ESSS
T ss_pred ecCC
Confidence 8766
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=7.7e-13 Score=130.20 Aligned_cols=221 Identities=14% Similarity=0.098 Sum_probs=143.6
Q ss_pred cCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
++||++||||||| -||+.++++|++.|.+ |++..|+.+.. +..++... ...+..++.+
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~---V~i~~~~~~~~---~~~~~~~~--------------~~~~~~~~~~ 65 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAE---VALSYQAERLR---PEAEKLAE--------------ALGGALLFRA 65 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTCE---EEEEESSGGGH---HHHHHHHH--------------HTTCCEEEEC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCE---EEEEeCcHHHH---HHHHHhhh--------------ccCccccccc
Confidence 6799999999998 6999999999999976 76667764322 11221111 2245678999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc-CCC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM-KHL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~ 238 (614)
|+++++ +.+.+++ ++|++||+|+.... .+.+...+++|+.++..+.+.+..+ .+-
T Consensus 66 D~~~~~------~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~ 139 (256)
T d1ulua_ 66 DVTQDE------ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG 139 (256)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE
T ss_pred ccCCHH------HHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccC
Confidence 999976 6666653 58999999986321 2346678899999999998877642 222
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.++|++||..+..... ....|+.||+..+.+.+..+. +
T Consensus 140 G~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltr~lA~ela~~ 181 (256)
T d1ulua_ 140 GGIVTLTYYASEKVVP--------------------------------------KYNVMAIAKAALEASVRYLAYELGPK 181 (256)
T ss_dssp EEEEEEECGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEeehHhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhccc
Confidence 4799999987633211 115799999998888876655 6
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCc
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQ 394 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~ 394 (614)
|+++..+.||.|..+..... ...........+.. + - .-+...+|+|++++.++..... --.+
T Consensus 182 gIrVN~I~PG~i~t~~~~~~-------~~~~~~~~~~~~~~----p---l--~R~~~pedvA~~v~fL~S~~s~--~itG 243 (256)
T d1ulua_ 182 GVRVNAISAGPVRTVAARSI-------PGFTKMYDRVAQTA----P---L--RRNITQEEVGNLGLFLLSPLAS--GITG 243 (256)
T ss_dssp TCEEEEEEECCC-----------------CHHHHHHHHHHS----T---T--SSCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CCEEeeeccceeeeccccch-------hhhHHHHHHHHhcC----C---C--CCCcCHHHHHHHHHHHhCchhC--CccC
Confidence 99999999998865432211 11112222222211 0 0 1134568999999888854432 1367
Q ss_pred cEEEeccC
Q psy6053 395 SIVHLTSS 402 (614)
Q Consensus 395 ~vyni~~~ 402 (614)
+++.+.+|
T Consensus 244 ~~i~VDGG 251 (256)
T d1ulua_ 244 EVVYVDAG 251 (256)
T ss_dssp CEEEESTT
T ss_pred CeEEECcC
Confidence 78888766
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.1e-12 Score=129.14 Aligned_cols=172 Identities=21% Similarity=0.214 Sum_probs=123.1
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+.++||+||||||++-||++++++|+++|.+ |+...|.. ++++++.+ .+++.. ...++.++.+
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~---Vv~~~r~~------~~l~~~~~-----~l~~~~---~~~~~~~~~~ 68 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQGLK---VVGCARTV------GNIEELAA-----ECKSAG---YPGTLIPYRC 68 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHTT---CSSEEEEEEC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHhcC---CCceEEEEEc
Confidence 4488999999999999999999999999976 78888853 33433321 122222 2258999999
Q ss_pred CCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH----cC-CC
Q psy6053 178 DAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE----MK-HL 238 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~----~~-~~ 238 (614)
|+++++ +.+++++ ++|++||+|+.... .+.++..+++|+.|+..+.+.+.. .+ +-
T Consensus 69 Dls~~~------~v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~ 142 (257)
T d1xg5a_ 69 DLSNEE------DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDD 142 (257)
T ss_dssp CTTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCS
T ss_pred cCCCHH------HHHHHHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCC
Confidence 999865 6666553 58999999997532 467888999999998887766532 11 23
Q ss_pred ceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHh------
Q psy6053 239 ELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAM------ 312 (614)
Q Consensus 239 k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~------ 312 (614)
.++|++||.++..... .+ ....|+.||+..+.+.+..+
T Consensus 143 g~Ii~isS~~~~~~~p--------~~----------------------------~~~~Y~~sKaal~~ltr~la~el~~~ 186 (257)
T d1xg5a_ 143 GHIININSMSGHRVLP--------LS----------------------------VTHFYSATKYAVTALTEGLRQELREA 186 (257)
T ss_dssp CEEEEECCGGGTSCCS--------CG----------------------------GGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEechHhcCCCC--------Cc----------------------------ccHHHHHHHHHHHhCHHHHHHHHHhC
Confidence 5899999987632210 00 01359999998888876543
Q ss_pred hCCCCEEEeecceeec
Q psy6053 313 NNGMPCLMLRPSIIIP 328 (614)
Q Consensus 313 ~~glp~~IvRp~~I~g 328 (614)
.+++.+..+-||.+-.
T Consensus 187 ~~~I~vn~i~PG~i~t 202 (257)
T d1xg5a_ 187 QTHIRATCISPGVVET 202 (257)
T ss_dssp TCCCEEEEEEESCBCS
T ss_pred CCCEEEEEEeCCCCCC
Confidence 2689999999987743
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.43 E-value=2.6e-12 Score=125.07 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=134.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCc----cEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNV----KKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v----~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
+.||||||++.||+.++++|++.|.++ ..|++..|.. +++++..+ .++ + ...++.++.+|
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~------~~l~~~~~-----~~~----~-~g~~~~~~~~D 65 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA------ADLEKISL-----ECR----A-EGALTDTITAD 65 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH------HHHHHHHH-----HHH----T-TTCEEEEEECC
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH------HHHHHHHH-----HHH----h-cCCcEEEEEec
Confidence 358999999999999999999999752 1356666653 33333211 111 1 33578899999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELF 241 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~ 241 (614)
+++++ +++++++ ++|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++
T Consensus 66 vt~~~------~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~I 139 (240)
T d2bd0a1 66 ISDMA------DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHI 139 (240)
T ss_dssp TTSHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCce
Confidence 99976 6666553 58999999997532 4678889999999998887776542 234689
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|++||..+..... ....|+.||+..+.+.+..+. +|+.
T Consensus 140 i~isS~~~~~~~~--------------------------------------~~~~Y~asK~al~~lt~~la~el~~~gIr 181 (240)
T d2bd0a1 140 FFITSVAATKAFR--------------------------------------HSSIYCMSKFGQRGLVETMRLYARKCNVR 181 (240)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEE
T ss_pred EEEechhhcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHhCcCCeE
Confidence 9999987643210 014799999877777665543 6899
Q ss_pred EEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 318 CLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
+..+.||.|-.+..+ .. ..+....+...+|+|++++.++..+
T Consensus 182 vn~i~PG~v~T~~~~----~~-----------------------~~~~~~~~~~PedvA~~v~~l~s~~ 223 (240)
T d2bd0a1 182 ITDVQPGAVYTPMWG----KV-----------------------DDEMQALMMMPEDIAAPVVQAYLQP 223 (240)
T ss_dssp EEEEEECCBCSTTTC----CC-----------------------CSTTGGGSBCHHHHHHHHHHHHTSC
T ss_pred EEEeeeCcccCchhh----hc-----------------------CHhhHhcCCCHHHHHHHHHHHHcCC
Confidence 999999988433211 00 0111122345689999999888654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.43 E-value=6.1e-13 Score=131.05 Aligned_cols=228 Identities=11% Similarity=0.092 Sum_probs=148.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.||.+|||||++.||+.++++|++.|.+ |++..|++ +++++..+ .++ + ...++.++.+|++
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~---V~i~~r~~------~~l~~~~~-----~l~----~-~g~~~~~~~~Dvs 61 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLR---VFVCARGE------EGLRTTLK-----ELR----E-AGVEADGRTCDVR 61 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHH----H-TTCCEEEEECCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHH----h-cCCcEEEEEeecC
Confidence 3788999999999999999999999976 78888853 33333221 111 1 3357899999999
Q ss_pred CCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-----CCCceE
Q psy6053 181 ADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-----KHLELF 241 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-----~~~k~~ 241 (614)
+++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++
T Consensus 62 ~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~I 135 (257)
T d2rhca1 62 SVP------EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRI 135 (257)
T ss_dssp CHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccc
Confidence 976 6666554 58999999997532 4667889999999999999987541 234579
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
|.+||..+..... ....|+.||+..+.+.+..+. +|++
T Consensus 136 i~i~S~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIr 177 (257)
T d2rhca1 136 VNIASTGGKQGVV--------------------------------------HAAPYSASKHGVVGFTKALGLELARTGIT 177 (257)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred ccccccccccccc--------------------------------------cchhHHHHHHHHHHHHHHHHHHhhhhCcE
Confidence 9999986533211 014799999988888776654 6899
Q ss_pred EEEeecceeecccCCCCc-cccCC-CCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCcc
Q psy6053 318 CLMLRPSIIIPVWREPLP-GWTDN-INGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQS 395 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~~-gw~d~-~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~ 395 (614)
+..+.||.|-.+..+... .+.+. -..+......+....+ .--+...+|+|++++.++..... --.++
T Consensus 178 VN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~P---------lgR~~~pedia~~v~fL~S~~s~--~itG~ 246 (257)
T d2rhca1 178 VNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVP---------IGRYVQPSEVAEMVAYLIGPGAA--AVTAQ 246 (257)
T ss_dssp EEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTST---------TSSCBCHHHHHHHHHHHTSGGGT--TCCSC
T ss_pred EEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhc--CCcCc
Confidence 999999987432110000 00000 0011112222222110 01145578999999888854331 23678
Q ss_pred EEEeccC
Q psy6053 396 IVHLTSS 402 (614)
Q Consensus 396 vyni~~~ 402 (614)
++.+.+|
T Consensus 247 ~i~vDGG 253 (257)
T d2rhca1 247 ALNVCGG 253 (257)
T ss_dssp EEEESTT
T ss_pred eEEECcC
Confidence 8888766
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.42 E-value=3.1e-12 Score=126.04 Aligned_cols=230 Identities=14% Similarity=0.113 Sum_probs=147.3
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||+||||||||-||++++++|++.|++ |++..|.... ..+++.+.++ + ...++..+.+|
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~---Vvi~~~~~~~--~~~~~~~~~~------------~-~g~~~~~~~~D 64 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGAS---VVVNYGSSSK--AAEEVVAELK------------K-LGAQGVAIQAD 64 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHHHH------------H-TTCCEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEcCCChH--HHHHHHHHHH------------H-cCCCceEecCC
Confidence 468999999999999999999999999987 6665554321 2233332221 1 33578999999
Q ss_pred CCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEE
Q psy6053 179 AEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVH 243 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~ 243 (614)
+++++ +.+.+++ .+|++||+||.... .+.++..+++|+.+...+++.+... .+-.+.+.
T Consensus 65 ~~~~~------~v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~ii 138 (259)
T d1ja9a_ 65 ISKPS------EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIIL 138 (259)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccc
Confidence 99865 6655543 58999999997532 4567788999999999999888762 23345666
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
++|..+.-. +. | ....|+.||+.-+.+.+..+. +|+.+.
T Consensus 139 i~s~~~~~~--~~-------~----------------------------~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN 181 (259)
T d1ja9a_ 139 TSSIAAVMT--GI-------P----------------------------NHALYAGSKAAVEGFCRAFAVDCGAKGVTVN 181 (259)
T ss_dssp ECCGGGTCC--SC-------C----------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ccccccccc--CC-------C----------------------------CchhHHHHHHHHHHHHHHHHHHHhhcCeEEe
Confidence 666543110 00 0 014799999888777766554 689999
Q ss_pred EeecceeecccC------CCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 320 MLRPSIIIPVWR------EPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 320 IvRp~~I~g~~~------~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
.+.||.|-.+.. .+...+ .. ..+..+...+.... ...-+...+|||++++.++..... --.
T Consensus 182 ~I~PG~i~T~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~---------pl~R~g~p~eVa~~v~fL~S~~a~--~it 248 (259)
T d1ja9a_ 182 CIAPGGVKTDMFDENSWHYAPGGY-KG-MPQEKIDEGLANMN---------PLKRIGYPADIGRAVSALCQEESE--WIN 248 (259)
T ss_dssp EEEECCBSSHHHHHHGGGTSTTCC-TT-CCHHHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHSGGGT--TCC
T ss_pred ccCcCCccChhhhhhhhhhhhhhc-cc-CCHHHHHHHHHhCC---------CCCCCcCHHHHHHHHHHHhCchhc--CCc
Confidence 999998843210 000000 00 11111222222211 111245678999999988865442 136
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
+.+..+.+|
T Consensus 249 G~~i~vDGG 257 (259)
T d1ja9a_ 249 GQVIKLTGG 257 (259)
T ss_dssp SCEEEESTT
T ss_pred CceEEeCCC
Confidence 778877665
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=6.4e-13 Score=129.02 Aligned_cols=213 Identities=11% Similarity=0.019 Sum_probs=140.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||++|||||++.||+.++++|++.|.+ |++..|++ +.+++ ...+++.+|+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~---V~~~~r~~------~~l~~-------------------~~~~~~~~Dv 53 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAE---VTICARNE------ELLKR-------------------SGHRYVVCDL 53 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHH-------------------TCSEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHh-------------------cCCcEEEcch
Confidence 47899999999999999999999999976 88888863 23322 1235678999
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeCcee
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHISTAYC 249 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST~~~ 249 (614)
++. .+...+-+.++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|++||..+
T Consensus 54 ~~~-----~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~ 128 (234)
T d1o5ia_ 54 RKD-----LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSV 128 (234)
T ss_dssp TTC-----HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred HHH-----HHHHHHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccc
Confidence 863 23344444689999999986432 4567888999999988887766431 24458999998764
Q ss_pred ccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEeecce
Q psy6053 250 HLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSI 325 (614)
Q Consensus 250 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~ 325 (614)
..... ....|+.||+..+.+.+..+. +|+++..+.||.
T Consensus 129 ~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~ 170 (234)
T d1o5ia_ 129 ISPIE--------------------------------------NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGW 170 (234)
T ss_dssp TSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred ccccc--------------------------------------ccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCc
Confidence 32211 114799999988777766544 689999999997
Q ss_pred eecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 326 IIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 326 I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
|-.+... ..... .......+.. ..--+...+|+|++++.++..... --.+++..+.+|
T Consensus 171 v~T~~~~-------~~~~~-~~~~~~~~~~---------pl~R~~~pediA~~v~fL~S~~s~--~itG~~i~vDGG 228 (234)
T d1o5ia_ 171 TETERVK-------ELLSE-EKKKQVESQI---------PMRRMAKPEEIASVVAFLCSEKAS--YLTGQTIVVDGG 228 (234)
T ss_dssp BCCTTHH-------HHSCH-HHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cchhhhh-------hhcCH-HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhChhhc--CCcCcEEEECcc
Confidence 7433110 00111 1111111111 011245688999999888754331 136788888766
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=2.8e-12 Score=125.51 Aligned_cols=168 Identities=14% Similarity=0.182 Sum_probs=115.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|||||||+.||..++++|++...+-.+|++..|++.... .++++.+ ...++.++.+|+++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~---~~~~~~~--------------~~~~~~~~~~Dvs~ 64 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK---ELEDLAK--------------NHSNIHILEIDLRN 64 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH---HHHHHHH--------------HCTTEEEEECCTTC
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH---HHHHHHh--------------cCCcEEEEEEEecc
Confidence 579999999999999999999864333346999999875532 2333211 23579999999999
Q ss_pred CCCCCCHHHHHHHh---------ccccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc---------
Q psy6053 182 DELAIKESDRQLLA---------SEVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM--------- 235 (614)
Q Consensus 182 ~~lGLs~~~~~~l~---------~~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~--------- 235 (614)
++ +.+.++ ..+|++||+||... + .+.++..+++|+.|+..+.+.+...
T Consensus 65 ~~------~v~~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~ 138 (248)
T d1snya_ 65 FD------AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANE 138 (248)
T ss_dssp GG------GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH------HHHHHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccc
Confidence 87 444332 24899999999632 1 2346778999999998887765431
Q ss_pred -----CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH
Q psy6053 236 -----KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE 310 (614)
Q Consensus 236 -----~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~ 310 (614)
.+..++|.+||..+.-...+ .| ....|+.||+....+.+.
T Consensus 139 ~~~~~~~~g~ii~i~S~~g~~~~~~-------~~----------------------------~~~~Y~aSKaal~~lt~~ 183 (248)
T d1snya_ 139 SQPMGVGRAAIINMSSILGSIQGNT-------DG----------------------------GMYAYRTSKSALNAATKS 183 (248)
T ss_dssp TSCSSTTTCEEEEECCGGGCSTTCC-------SC----------------------------CCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCCC-------CC----------------------------ChHHHHHHHHHHHHHHHH
Confidence 12357899999764321100 00 013699999987777665
Q ss_pred Hhh----CCCCEEEeecceee
Q psy6053 311 AMN----NGMPCLMLRPSIII 327 (614)
Q Consensus 311 ~~~----~glp~~IvRp~~I~ 327 (614)
.+. .|+.+..+.||.|-
T Consensus 184 la~e~~~~gI~vn~v~PG~v~ 204 (248)
T d1snya_ 184 LSVDLYPQRIMCVSLHPGWVK 204 (248)
T ss_dssp HHHHHGGGTCEEEEECCCSBC
T ss_pred HHHHhCCCCeEEEEcCCCccc
Confidence 543 68999999998773
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=3.8e-12 Score=125.41 Aligned_cols=174 Identities=18% Similarity=0.120 Sum_probs=124.6
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
+-++||.++|||||+.||+.++++|.+.+.+-.+|++..|+. ++++++.+ .+..+.+. .++.++.+
T Consensus 2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~------~~l~~~~~-----~l~~~~~~---~~~~~~~~ 67 (259)
T d1oaaa_ 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE------SMLRQLKE-----ELGAQQPD---LKVVLAAA 67 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH------HHHHHHHH-----HHHHHCTT---SEEEEEEC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH------HHHHHHHH-----HHHhhcCC---ceEEEEEc
Confidence 346899999999999999999999987322223488888863 33433321 22222332 58999999
Q ss_pred CCCCCCCCCCHHHHHHHhc-----------cccEEEEcccccC------h----hHHHHHHHHHhHHHHHHHHHHHHHc-
Q psy6053 178 DAEADELAIKESDRQLLAS-----------EVDIMIHGAATIR------F----DEALKKAVLLNTRGTKMMLSLAKEM- 235 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~-----------~vd~ViH~AA~v~------~----~~~~~~~~~~Nv~gt~~ll~la~~~- 235 (614)
|+++++ +.+++++ .+|+++|+||... + .+.++..+++|+.|+..+.+.+...
T Consensus 68 Dvs~~~------~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m 141 (259)
T d1oaaa_ 68 DLGTEA------GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAF 141 (259)
T ss_dssp CTTSHH------HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred cCCCHH------HHHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999976 6666642 3579999998632 1 2467889999999999999988763
Q ss_pred CC----CceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHH
Q psy6053 236 KH----LELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEA 311 (614)
Q Consensus 236 ~~----~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~ 311 (614)
.. -.++|++||..+..... ....|+.||+..+.+.+..
T Consensus 142 ~~~~~~~g~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~l 183 (259)
T d1oaaa_ 142 QDSPGLSKTVVNISSLCALQPYK--------------------------------------GWGLYCAGKAARDMLYQVL 183 (259)
T ss_dssp CCCTTCEEEEEEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcccccccccccccCCCc--------------------------------------cchHHHHHHHHHHHHHHHH
Confidence 11 24799999986633211 0157999999999888877
Q ss_pred hh--CCCCEEEeecceeecc
Q psy6053 312 MN--NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 312 ~~--~glp~~IvRp~~I~g~ 329 (614)
+. +|+.+..+.||.|-.+
T Consensus 184 a~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 184 AAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp HHHCTTEEEEEEECCSBSSH
T ss_pred HhCCCCCEEEEEEcCCCCCH
Confidence 65 6999999999988543
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=6.8e-13 Score=133.68 Aligned_cols=216 Identities=14% Similarity=0.134 Sum_probs=136.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCc---CHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGK---NARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~---~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
++||+++||||++.||+.++++|++.|.+ |++..|..... ...+.++++.+ + ...+...+.
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~Ga~---Vvi~d~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~ 68 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERGAL---VVVNDLGGDFKGVGKGSSAADKVVE---------E----IRRRGGKAV 68 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEECCCBCTTSCBCCSHHHHHHHH---------H----HHHTTCEEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEeCCchhhhhhhhHHHHHHHHH---------H----Hhhcccccc
Confidence 67999999999999999999999999976 77777754321 11122222211 0 111223345
Q ss_pred CCCCCCCCCCCHHHHHHHh---ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEE
Q psy6053 177 GDAEADELAIKESDRQLLA---SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVH 243 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~---~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~ 243 (614)
+|+++.+- .++.++.+. .++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|+
T Consensus 69 ~d~~~~~~--~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~ 146 (302)
T d1gz6a_ 69 ANYDSVEA--GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIM 146 (302)
T ss_dssp EECCCGGG--HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred cccchHHH--HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEE
Confidence 67766540 011222222 268999999997542 3567889999999999988876541 24468999
Q ss_pred EeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEE
Q psy6053 244 ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCL 319 (614)
Q Consensus 244 vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~ 319 (614)
+||..+..... ....|+.||+.-+.+.+..+. +|+.+.
T Consensus 147 isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN 188 (302)
T d1gz6a_ 147 TASASGIYGNF--------------------------------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCN 188 (302)
T ss_dssp ECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEE
T ss_pred eCChhhcCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHHHhccCCcee
Confidence 99986532210 014799999988877766554 689999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.+-||.+...... . .+. ........+|+|++++.++.... ...++++++
T Consensus 189 ~I~PG~~~t~~~~-------~--~~~-------------------~~~~~~~PedvA~~v~fL~S~~a---~itG~~i~v 237 (302)
T d1gz6a_ 189 TIAPNAGSRMTET-------V--MPE-------------------DLVEALKPEYVAPLVLWLCHESC---EENGGLFEV 237 (302)
T ss_dssp EEEEECCSTTTGG-------G--SCH-------------------HHHHHSCGGGTHHHHHHHTSTTC---CCCSCEEEE
T ss_pred eeCCCCCCcchhh-------c--CcH-------------------hhHhcCCHHHHHHHHHHHcCCCc---CCCCcEEEe
Confidence 9999876332111 0 011 11122345899999988774322 136677777
Q ss_pred ccC
Q psy6053 400 TSS 402 (614)
Q Consensus 400 ~~~ 402 (614)
.+|
T Consensus 238 dGG 240 (302)
T d1gz6a_ 238 GAG 240 (302)
T ss_dssp ETT
T ss_pred CCC
Confidence 665
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.38 E-value=2.5e-12 Score=126.08 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=113.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
++|+|||||||+-||..++++|++.|..+ +|++..|+... ++++. +. ...++.++.+|++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~-~Vi~~~R~~~~------~~~l~---------~~----~~~~~~~~~~Dvs 61 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEK------ATELK---------SI----KDSRVHVLPLTVT 61 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGG------CHHHH---------TC----CCTTEEEEECCTT
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCC-EEEEEeCCHHH------HHHHH---------Hh----hCCceEEEEEecC
Confidence 46999999999999999999999998753 57777887532 22221 11 3357999999999
Q ss_pred CCCCCCCHHHHHHHhc---------cccEEEEcccccC----h----hHHHHHHHHHhHHHHHHHHHHHHHc------C-
Q psy6053 181 ADELAIKESDRQLLAS---------EVDIMIHGAATIR----F----DEALKKAVLLNTRGTKMMLSLAKEM------K- 236 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~---------~vd~ViH~AA~v~----~----~~~~~~~~~~Nv~gt~~ll~la~~~------~- 236 (614)
+++ +++.+.+ ++|++||+||... + .+.++..+++|+.|+..+.+.+... +
T Consensus 62 ~~~------~v~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~ 135 (250)
T d1yo6a1 62 CDK------SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKE 135 (250)
T ss_dssp CHH------HHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSS
T ss_pred CHH------HHHHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC
Confidence 865 4444432 3899999999632 1 3457788999999998887765421 1
Q ss_pred -------CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHH
Q psy6053 237 -------HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVV 309 (614)
Q Consensus 237 -------~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~ 309 (614)
....++.+|+......... ... .. .....|+.||+....+.+
T Consensus 136 ~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~-~~-----------------------------~~~~aY~aSKaal~~l~~ 184 (250)
T d1yo6a1 136 SGDQLSVSRAAVITISSGLGSITDNT-SGS-AQ-----------------------------FPVLAYRMSKAAINMFGR 184 (250)
T ss_dssp CSSCCCTTTCEEEEECCGGGCSTTCC-STT-SS-----------------------------SCBHHHHHHHHHHHHHHH
T ss_pred CCccccceeccccccccccccccCCc-ccc-cc-----------------------------hhHHHHHHHHHHHHHHHH
Confidence 1134566665533211100 000 00 001359999998887776
Q ss_pred HHhh----CCCCEEEeeccee
Q psy6053 310 EAMN----NGMPCLMLRPSII 326 (614)
Q Consensus 310 ~~~~----~glp~~IvRp~~I 326 (614)
..+. .|+.+..+-||.|
T Consensus 185 ~la~el~~~gI~v~~i~PG~v 205 (250)
T d1yo6a1 185 TLAVDLKDDNVLVVNFCPGWV 205 (250)
T ss_dssp HHHHHTGGGTCEEEEEECCCC
T ss_pred HHHHHhcccCeEEEEEecCCC
Confidence 6554 6899999999876
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.9e-12 Score=129.40 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=122.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
.|.|||||||+.||+.++++|++.|.++..|+...|... ..+++.+..+ +... ...++..+.+|+++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~---~~~~l~~~~~---------~~~~-~~~~~~~~~~Dv~~ 68 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLK---TQGRLWEAAR---------ALAC-PPGSLETLQLDVRD 68 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGG---GTHHHHHHHH---------HTTC-CTTSEEEEECCTTC
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChh---hhHHHHHHHH---------HHhc-cCCceEEEeccccc
Confidence 467899999999999999999999988555555555432 2344443321 1111 34689999999999
Q ss_pred CCCCCCHHHHHHHhc-----cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-c--CCCceEEEEeC
Q psy6053 182 DELAIKESDRQLLAS-----EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-M--KHLELFVHIST 246 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~-----~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~--~~~k~~V~vST 246 (614)
++ +.+.+.+ .+|+++|+|+.... .+.++..+++|+.|+.++.+.+.. | .+-.++|++||
T Consensus 69 ~~------~~~~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS 142 (285)
T d1jtva_ 69 SK------SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGS 142 (285)
T ss_dssp HH------HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred hH------hhhhhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEec
Confidence 76 6766654 47999999986532 356788899999999888877643 1 24468999999
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+.... | ....|+.||+..+.+.+..+. +|+.+..+.
T Consensus 143 ~~g~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~ 184 (285)
T d1jtva_ 143 VGGLMGL----------P----------------------------FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIE 184 (285)
T ss_dssp GGGTSCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhhcCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEe
Confidence 8763321 1 114799999987777665544 699999999
Q ss_pred cceeec
Q psy6053 323 PSIIIP 328 (614)
Q Consensus 323 p~~I~g 328 (614)
||.|-.
T Consensus 185 PG~v~T 190 (285)
T d1jtva_ 185 CGPVHT 190 (285)
T ss_dssp ECCBCC
T ss_pred cCCCCC
Confidence 998843
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.38 E-value=3.2e-12 Score=126.90 Aligned_cols=234 Identities=11% Similarity=0.052 Sum_probs=148.9
Q ss_pred ccccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 97 ~~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+..++||++|||||||-||+.++++|++.|.+ |++..|+... ..+.+.+. +++ ...++.++.
T Consensus 13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~---Vvi~~~~~~~--~~~~~~~~--------~~~-----~g~~~~~~~ 74 (272)
T d1g0oa_ 13 SASLEGKVALVTGAGRGIGREMAMELGRRGCK---VIVNYANSTE--SAEEVVAA--------IKK-----NGSDAACVK 74 (272)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHH--------HHH-----TTCCEEEEE
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEeCCchH--HHHHHHHH--------HHh-----hCCceeeEe
Confidence 34478999999999999999999999999976 7777775421 11222211 111 335789999
Q ss_pred CCCCCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHH-cCCCceE
Q psy6053 177 GDAEADELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKE-MKHLELF 241 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~ 241 (614)
+|+++++ +++.+++ ++|+++|+|+.... .+.++..+++|+.|+..+.+.+.. |..-.+.
T Consensus 75 ~D~~~~~------~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~ 148 (272)
T d1g0oa_ 75 ANVGVVE------DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRL 148 (272)
T ss_dssp CCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEE
T ss_pred CCCCCHH------HHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccc
Confidence 9999866 6666554 57999999997532 456778899999999999998876 3334578
Q ss_pred EEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCC
Q psy6053 242 VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMP 317 (614)
Q Consensus 242 V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 317 (614)
+.++|.++..... .....|+.||+.-+.+.+..+. +|++
T Consensus 149 i~i~s~~~~~~~~-------------------------------------~~~~~Y~asKaal~~ltk~lA~e~~~~gIr 191 (272)
T d1g0oa_ 149 ILMGSITGQAKAV-------------------------------------PKHAVYSGSKGAIETFARCMAIDMADKKIT 191 (272)
T ss_dssp EEECCGGGTCSSC-------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred ccccccccccccc-------------------------------------cchhhHHHHHHHHHHHHHHHHHHhchhCeE
Confidence 8888775422110 0124699999988888765544 6999
Q ss_pred EEEeecceeecccCCCC-ccccC--CCCchHHHHHH-HhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 318 CLMLRPSIIIPVWREPL-PGWTD--NINGPTGLLIG-AGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 318 ~~IvRp~~I~g~~~~p~-~gw~d--~~~g~~~~~~~-~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+..+.||.|-.+..... ..+.. ........... ..... +- --+...+|||++++.++..... --.
T Consensus 192 VN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Pl--gR~~~peevA~~v~fL~s~~s~--~it 260 (272)
T d1g0oa_ 192 VNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS-------PL--RRVGLPIDIARVVCFLASNDGG--WVT 260 (272)
T ss_dssp EEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC-------TT--CSCBCHHHHHHHHHHHHSGGGT--TCC
T ss_pred EEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccC-------CC--CCCcCHHHHHHHHHHHhCchhc--Ccc
Confidence 99999998843311000 00000 00011111110 11100 00 1245679999999988854432 136
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
+.+..+.+|
T Consensus 261 G~~i~vDGG 269 (272)
T d1g0oa_ 261 GKVIGIDGG 269 (272)
T ss_dssp SCEEEESTT
T ss_pred CceEeECCC
Confidence 777777665
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.8e-12 Score=124.26 Aligned_cols=222 Identities=13% Similarity=0.103 Sum_probs=146.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||++|||||+|-||+.++++|+++|.+ |++..|.+ ++++++. ....+.....|+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~---Vi~~~r~~------~~l~~~~---------------~~~~~~~~~~d~ 59 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAK---VIATDINE------SKLQELE---------------KYPGIQTRVLDV 59 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCE---EEEEESCH------HHHGGGG---------------GSTTEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEeCCH------HHHHHHH---------------hccCCceeeeec
Confidence 68999999999999999999999999976 88888863 3444321 224567778888
Q ss_pred CCCCCCCCHHHHHHH---hccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLL---ASEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l---~~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST 246 (614)
...+ ..+.. +.++|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|++||
T Consensus 60 ~~~~------~~~~~~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS 133 (245)
T d2ag5a1 60 TKKK------QIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSS 133 (245)
T ss_dssp TCHH------HHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cccc------cccccccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeec
Confidence 7644 34433 3478999999997643 3567889999999999988876541 24458999998
Q ss_pred ceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEee
Q psy6053 247 AYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLMLR 322 (614)
Q Consensus 247 ~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~IvR 322 (614)
..+.-. +. .....|+.+|+.-+.+++..+. +|+.+..+.
T Consensus 134 ~~~~~~--~~-----------------------------------~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~ 176 (245)
T d2ag5a1 134 VASSVK--GV-----------------------------------VNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVC 176 (245)
T ss_dssp SBTTTB--CC-----------------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhhccC--Cc-----------------------------------cchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEe
Confidence 754210 00 0115799999988888877655 699999999
Q ss_pred cceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 323 PSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 323 p~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
||.|-.+... .+......+........... ..--+.-.+|+|+++..++..... -..+++..+.+|
T Consensus 177 PG~i~T~~~~---~~~~~~~~~~~~~~~~~~~~---------pl~R~~~pedva~~v~fL~s~~s~--~iTG~~i~VDGG 242 (245)
T d2ag5a1 177 PGTVDTPSLQ---ERIQARGNPEEARNDFLKRQ---------KTGRFATAEEIAMLCVYLASDESA--YVTGNPVIIDGG 242 (245)
T ss_dssp ESCEECHHHH---HHHHHSSSHHHHHHHHHHTC---------TTSSCEEHHHHHHHHHHHHSGGGT--TCCSCEEEECTT
T ss_pred eceeechhhH---hhhhhhhhhHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhChhhC--CCcCceEEeCCC
Confidence 9988543210 00000011111222211110 011144568999999998865432 136788888776
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.36 E-value=1.6e-12 Score=126.99 Aligned_cols=219 Identities=12% Similarity=0.135 Sum_probs=143.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
+.|||||||+-||+.++++|++.|.+ |++..+... ...+.+.+.++ . ...++.++.+|++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~---V~i~~~~~~--~~~~~~~~~~~------------~-~g~~~~~~~~Dv~~~ 63 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCK---VLVNYARSA--KAAEEVSKQIE------------A-YGGQAITFGGDVSKE 63 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCH--HHHHHHHHHHH------------H-HTCEEEEEECCTTSH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEeCCCH--HHHHHHHHHHH------------H-cCCcEEEEeCCCCCH
Confidence 36999999999999999999999976 666554321 11222222211 1 335788999999997
Q ss_pred CCCCCHHHHHHHhc-------cccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEe
Q psy6053 183 ELAIKESDRQLLAS-------EVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHIS 245 (614)
Q Consensus 183 ~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vS 245 (614)
+ +.+.+++ ++|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|++|
T Consensus 64 ~------~v~~~~~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnis 137 (244)
T d1edoa_ 64 A------DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIA 137 (244)
T ss_dssp H------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred H------HHHHHHHHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 6 6666554 58999999997542 3668889999999998888776542 2446899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|..+..... ....|+.||+.-+.+.+..+. +|+.+..+
T Consensus 138 S~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I 179 (244)
T d1edoa_ 138 SVVGLIGNI--------------------------------------GQANYAAAKAGVIGFSKTAAREGASRNINVNVV 179 (244)
T ss_dssp CTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred ChhhcCCCC--------------------------------------CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEE
Confidence 987542210 014799999988888776654 68999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
.||.|-.+..+ .. . ........... + .--+...+|+|+++..++..+..+ --.+++..+.+
T Consensus 180 ~PG~i~T~~~~-------~~-~-~~~~~~~~~~~----p-----l~R~~~p~dvA~~v~fLa~S~~a~-~itG~~i~vdG 240 (244)
T d1edoa_ 180 CPGFIASDMTA-------KL-G-EDMEKKILGTI----P-----LGRTGQPENVAGLVEFLALSPAAS-YITGQAFTIDG 240 (244)
T ss_dssp EECSBCSHHHH-------TT-C-HHHHHHHHTSC----T-----TCSCBCHHHHHHHHHHHHHCSGGG-GCCSCEEEEST
T ss_pred ecceeccHHHH-------Hh-h-HHHHHHHHhcC----C-----CCCCcCHHHHHHHHHHHHCCchhc-CCcCCeEEeCC
Confidence 99987433111 11 1 11222221111 0 011445799999998876433210 13677887776
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
|
T Consensus 241 G 241 (244)
T d1edoa_ 241 G 241 (244)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.36 E-value=2.3e-12 Score=128.09 Aligned_cols=233 Identities=15% Similarity=0.084 Sum_probs=144.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++.||+.++++|++.|.+ |++..|+. +++++..+ .+.+... ...++..+.+|+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~---V~~~~r~~------~~l~~~~~-----~i~~~~~--~~~~~~~~~~Dv 65 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQ---VTITGRNE------DRLEETKQ-----QILKAGV--PAEKINAVVADV 65 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHHTTC--CGGGEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHHcCC--CCcceEEEEeeC
Confidence 57999999999999999999999999876 88888863 23332211 1111110 235799999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-----h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCce
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-----F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLEL 240 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~ 240 (614)
++++ +++++++ .+|++||+||... + .+.++..+++|+.|+..+.+.+... .+-..
T Consensus 66 ~~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ 139 (274)
T d1xhla_ 66 TEAS------GQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEI 139 (274)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccccccc
Confidence 9976 6666554 5899999998531 1 2457888999999999888777542 23456
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
++++||..+..... ....|+.||+.-+.+.+..+. +|+
T Consensus 140 ii~~ss~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~gI 181 (274)
T d1xhla_ 140 VNVSSIVAGPQAHS--------------------------------------GYPYYACAKAALDQYTRCTAIDLIQHGV 181 (274)
T ss_dssp EEECCGGGSSSCCT--------------------------------------TSHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred ccchhhhhccccCC--------------------------------------CCceehhhhhHHHHHHHHHHHHHhHhCC
Confidence 77777654322110 013699999988887765544 799
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
.+..+.||.|-.+... ..........-...........+| .--+...+|+|++++.++..+.. .--.+++
T Consensus 182 rVN~I~PG~i~T~~~~----~~~~~~~~~~~~~~~~~~~~~~iP-----lgR~g~pediA~~v~fL~S~d~s-~~itG~~ 251 (274)
T d1xhla_ 182 RVNSVSPGAVATGFMG----AMGLPETASDKLYSFIGSRKECIP-----VGHCGKPEEIANIIVFLADRNLS-SYIIGQS 251 (274)
T ss_dssp EEEEEEECCBCSSHHH----HTTCCHHHHHHHHHHHHHCTTTCT-----TSSCBCHHHHHHHHHHHHCHHHH-TTCCSCE
T ss_pred ceeeeccCCCcCchhh----hhcccchhhHHHHHHHHHHHcCCC-----CCCCcCHHHHHHHHHHHcCCccc-cCccCcE
Confidence 9999999988433110 000000000111111110000000 01134579999999888743211 0137888
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
+.+.+|
T Consensus 252 i~vDGG 257 (274)
T d1xhla_ 252 IVADGG 257 (274)
T ss_dssp EEESTT
T ss_pred EEeCcC
Confidence 888877
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.35 E-value=1.2e-11 Score=123.96 Aligned_cols=225 Identities=19% Similarity=0.125 Sum_probs=142.5
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||+++||||||.||+.++++|++.|.+ |++..|++. ++++..+ .+..+ ...++..+.+|
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~---Vii~~r~~~------~l~~~~~-----~l~~~----~g~~~~~~~~D 83 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQ---CVIASRKMD------VLKATAE-----QISSQ----TGNKVHAIQCD 83 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESCHH------HHHHHHH-----HHHHH----HSSCEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE---EEEEECCHH------HHHHHHH-----HHHHh----cCCceEEEEec
Confidence 588999999999999999999999999976 888888742 2222111 11111 23578899999
Q ss_pred CCCCCCCCCHHHHHHHh-------ccccEEEEcccccCh-------hHHHHHHHHHhHHHHHHHHHHHH----HcCCCce
Q psy6053 179 AEADELAIKESDRQLLA-------SEVDIMIHGAATIRF-------DEALKKAVLLNTRGTKMMLSLAK----EMKHLEL 240 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~la~----~~~~~k~ 240 (614)
+++++ +.+.+. .++|+++|+|+.... .+.+.....+|+.+...+...+. ....-..
T Consensus 84 ~~~~~------~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
T d1w6ua_ 84 VRDPD------MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAA 157 (294)
T ss_dssp TTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccChH------HHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccccccccc
Confidence 99866 554443 368999999996532 24456677888888766654432 2234445
Q ss_pred EEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCC
Q psy6053 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGM 316 (614)
Q Consensus 241 ~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 316 (614)
++.+||.++.... +....|+.||+.-+.+.+..+. +|+
T Consensus 158 i~~~ss~~~~~~~--------------------------------------~~~~~YsasKaal~~ltk~lA~ela~~gI 199 (294)
T d1w6ua_ 158 FLSITTIYAETGS--------------------------------------GFVVPSASAKAGVEAMSKSLAAEWGKYGM 199 (294)
T ss_dssp EEEECCTHHHHCC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred ccccccchhhhcc--------------------------------------cccchHHHHHHHHHHHHHHHHHHHhHhCe
Confidence 6677766542211 0124699999998888876654 689
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccE
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSI 396 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~v 396 (614)
++..+.||.|-.+.... +.+. ............ + .--+...+|+|+++..++..... --.|.+
T Consensus 200 rVN~I~PG~i~T~~~~~---~~~~---~~~~~~~~~~~~----p-----l~R~~~pediA~~v~fL~sd~s~--~itG~~ 262 (294)
T d1w6ua_ 200 RFNVIQPGPIKTKGAFS---RLDP---TGTFEKEMIGRI----P-----CGRLGTVEELANLAAFLCSDYAS--WINGAV 262 (294)
T ss_dssp EEEEEEECCBCC---------CCT---TSHHHHHHHTTC----T-----TSSCBCHHHHHHHHHHHTSGGGT--TCCSCE
T ss_pred EEEEEccCccccchhhh---ccCC---cHHHHHHHhhcC----C-----CCCCCCHHHHHHHHHHHhCchhc--CCCCcE
Confidence 99999999885543211 0010 111222222211 0 01134569999999988854331 137888
Q ss_pred EEeccC
Q psy6053 397 VHLTSS 402 (614)
Q Consensus 397 yni~~~ 402 (614)
..+.+|
T Consensus 263 i~vDGG 268 (294)
T d1w6ua_ 263 IKFDGG 268 (294)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 888877
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=1.3e-11 Score=119.81 Aligned_cols=202 Identities=10% Similarity=0.076 Sum_probs=134.1
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+||+||||||||.||+.++++|++.|.+ |+++.|.+... ......+..|..
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~---V~~~~~~~~~~--------------------------~~~~~~~~~~~~ 51 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWW---VASIDVVENEE--------------------------ASASVIVKMTDS 51 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSCCTT--------------------------SSEEEECCCCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEeCCcccc--------------------------ccccceeecccC
Confidence 4899999999999999999999999876 77777765431 123334445544
Q ss_pred CCCCCCCHHH----HHHHhc--cccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHH-cCCCceEEEEe
Q psy6053 181 ADELAIKESD----RQLLAS--EVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKE-MKHLELFVHIS 245 (614)
Q Consensus 181 ~~~lGLs~~~----~~~l~~--~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~-~~~~k~~V~vS 245 (614)
+.+ +.+. ...... ++|++||+||... ..+.++..+++|+.++.++.+++.. +++-.++|++|
T Consensus 52 ~~~---~~~~~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~is 128 (236)
T d1dhra_ 52 FTE---QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAG 128 (236)
T ss_dssp HHH---HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cHH---HHHHHHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEc
Confidence 332 0011 111222 4899999998421 1345677899999999999888775 23345899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCCCEE
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGMPCL 319 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~glp~~ 319 (614)
|..+..... ....|+.||+..+.+.+..+. .|+.+.
T Consensus 129 S~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn 170 (236)
T d1dhra_ 129 AKAALDGTP--------------------------------------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAI 170 (236)
T ss_dssp CGGGGSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEE
T ss_pred cHHHcCCcc--------------------------------------CCcccHHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 986533211 014799999999999988764 378999
Q ss_pred EeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEe
Q psy6053 320 MLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHL 399 (614)
Q Consensus 320 IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni 399 (614)
.+.||.|-.+. ...... ....-.++|.+++|+.+..++..... ...+.+..+
T Consensus 171 ~v~PG~v~T~~-----------------~~~~~~---------~~~~~~~~~pe~va~~~~~l~s~~~~--~i~G~~i~v 222 (236)
T d1dhra_ 171 AVLPVTLDTPM-----------------NRKSMP---------EADFSSWTPLEFLVETFHDWITGNKR--PNSGSLIQV 222 (236)
T ss_dssp EEEESCEECHH-----------------HHHHST---------TSCGGGSEEHHHHHHHHHHHHTTTTC--CCTTCEEEE
T ss_pred EEEeccCcCCc-----------------chhhCc---------cchhhcCCCHHHHHHHHHHHhCCCcc--CCCCCeEEE
Confidence 99999874431 111111 11223578999999999888754432 235666655
Q ss_pred c
Q psy6053 400 T 400 (614)
Q Consensus 400 ~ 400 (614)
.
T Consensus 223 ~ 223 (236)
T d1dhra_ 223 V 223 (236)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.35 E-value=2.7e-12 Score=127.43 Aligned_cols=230 Identities=15% Similarity=0.127 Sum_probs=143.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
++||+++||||++-||+.++++|++.|.+ |++..|++ +++++..+ .+++.. . ...++..+.+|+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~---V~l~~r~~------~~l~~~~~-----~l~~~~-~-~~~~~~~~~~Dv 66 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGAN---VTITGRSS------ERLEETRQ-----IILKSG-V-SEKQVNSVVADV 66 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH-----HHHTTT-C-CGGGEEEEECCT
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHH-----HHHhcC-C-CCCceEEEEccC
Confidence 67999999999999999999999999976 88888863 23332211 111110 0 225789999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccCh-----------hHHHHHHHHHhHHHHHHHHHHHHHc--CCCc
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIRF-----------DEALKKAVLLNTRGTKMMLSLAKEM--KHLE 239 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~~-----------~~~~~~~~~~Nv~gt~~ll~la~~~--~~~k 239 (614)
++++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+.+.+... ++-.
T Consensus 67 s~~~------~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g 140 (272)
T d1xkqa_ 67 TTED------GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKG 140 (272)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred CCHH------HHHHHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCC
Confidence 9976 6666554 58999999986421 1247788999999999888876552 1223
Q ss_pred eEEEEeCc-eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----C
Q psy6053 240 LFVHISTA-YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----N 314 (614)
Q Consensus 240 ~~V~vST~-~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~ 314 (614)
.+|.++|. .+.... | ....|+.||+.-+.+.+..+. +
T Consensus 141 ~iI~~~Ss~a~~~~~----------~----------------------------~~~~Y~asKaal~~ltk~lA~el~~~ 182 (272)
T d1xkqa_ 141 EIVNVSSIVAGPQAQ----------P----------------------------DFLYYAIAKAALDQYTRSTAIDLAKF 182 (272)
T ss_dssp EEEEECCGGGSSSCC----------C----------------------------SSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchhccccCC----------C----------------------------CcchhhhHHHHHHHHHHHHHHHhccc
Confidence 56666654 322111 0 014699999988877766554 7
Q ss_pred CCCEEEeecceeecccCCCCccccCCCCchH---HHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC
Q psy6053 315 GMPCLMLRPSIIIPVWREPLPGWTDNINGPT---GLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391 (614)
Q Consensus 315 glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~---~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~ 391 (614)
|+.+..+.||.|-.+... ....+. .-............+ .--+.-.+|+|++++.++..... .-
T Consensus 183 gIrVN~I~PG~i~T~~~~-------~~~~~~~~~~~~~~~~~~~~~~~P-----lgR~g~pediA~~v~fL~S~~as-~~ 249 (272)
T d1xkqa_ 183 GIRVNSVSPGMVETGFTN-------AMGMPDQASQKFYNFMASHKECIP-----IGAAGKPEHIANIILFLADRNLS-FY 249 (272)
T ss_dssp TCEEEEEEECCBCSSHHH-------HTTCCHHHHHHHHHHHHHCTTTCT-----TSSCBCHHHHHHHHHHHHCHHHH-TT
T ss_pred CeEEEEEeeCCCcchhhh-------ccCCchHHHHHHHHHHHHHhcCCC-----CCCCcCHHHHHHHHHHHhCcchh-CC
Confidence 899999999988433111 001111 001111110000000 01144568999999888743321 01
Q ss_pred CCccEEEeccC
Q psy6053 392 HRQSIVHLTSS 402 (614)
Q Consensus 392 ~~~~vyni~~~ 402 (614)
..++++.+.+|
T Consensus 250 iTG~~i~vDGG 260 (272)
T d1xkqa_ 250 ILGQSIVADGG 260 (272)
T ss_dssp CCSCEEEESTT
T ss_pred ccCeEEEeCcC
Confidence 36888888777
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.30 E-value=3.9e-11 Score=116.23 Aligned_cols=204 Identities=14% Similarity=0.112 Sum_probs=132.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
..+||||||||.||+.++++|++.|++ |+++.|.+... ......+.+|...
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~---V~~~~~~~~~~--------------------------~~~~~~~~~~~~~ 52 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYT---VLNIDLSANDQ--------------------------ADSNILVDGNKNW 52 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEE---EEEEESSCCTT--------------------------SSEEEECCTTSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCchhc--------------------------ccccceeccccCc
Confidence 357999999999999999999999876 89999976532 1334455666665
Q ss_pred CCCCCCHHHH---HHHh--ccccEEEEcccccC--------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEEeCc
Q psy6053 182 DELAIKESDR---QLLA--SEVDIMIHGAATIR--------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~---~~l~--~~vd~ViH~AA~v~--------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~vST~ 247 (614)
.+- ..... .... .++|++||+||... ..+.++..+++|+.|+..+.+++... .+-.++|++||.
T Consensus 53 ~~~--~~~~~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~ 130 (235)
T d1ooea_ 53 TEQ--EQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA 130 (235)
T ss_dssp HHH--HHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred hhH--HHHHHHHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccH
Confidence 330 00011 1111 35899999998522 12456677999999999988887663 223579999998
Q ss_pred eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCCCEEEe
Q psy6053 248 YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGMPCLML 321 (614)
Q Consensus 248 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~glp~~Iv 321 (614)
.+..... ....|+.||+..+.+.+..+. .++.+..+
T Consensus 131 ~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i 172 (235)
T d1ooea_ 131 AAMGPTP--------------------------------------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTI 172 (235)
T ss_dssp GGGSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEE
T ss_pred HhcCCcc--------------------------------------cccchHHHHHHHHHHHHHHHHHhccCCCceEEEEE
Confidence 6532211 014799999999999988654 25677778
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
.||.+-.+ +...... ......+++.+++++.++..+..... +...+....+.+
T Consensus 173 ~Pg~~~T~-----------------~~~~~~~---------~~~~~~~~~~~~va~~~~~~l~~~~~-~~~tG~~i~v~~ 225 (235)
T d1ooea_ 173 MPVTLDTP-----------------MNRKWMP---------NADHSSWTPLSFISEHLLKWTTETSS-RPSSGALLKITT 225 (235)
T ss_dssp EESCBCCH-----------------HHHHHST---------TCCGGGCBCHHHHHHHHHHHHHCGGG-CCCTTCEEEEEE
T ss_pred ecCcCcCc-----------------chhhhCc---------CCccccCCCHHHHHHHHHHHhcCccc-cCCCceEEEEEe
Confidence 88866221 2222211 12234578999999998766655432 123556666643
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.2e-11 Score=116.85 Aligned_cols=164 Identities=15% Similarity=0.203 Sum_probs=117.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.+||+++||||++.||+.++++|++.|.+ |++..|+.... ++-.++ ...+......|+
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G~~---V~~~~r~~~~~--~~~~~~-----------------l~~~~~~~~~~~ 60 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQGAS---AVLLDLPNSGG--EAQAKK-----------------LGNNCVFAPADV 60 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEECTTSSH--HHHHHH-----------------HCTTEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEeCChHHH--HHHHHH-----------------hCCCcccccccc
Confidence 68999999999999999999999999976 88888876442 221111 224567778888
Q ss_pred CCCCCCCCHHHHHHHh-------ccccEEEEcccccC-------------hhHHHHHHHHHhHHHHHHHHHHHHHc----
Q psy6053 180 EADELAIKESDRQLLA-------SEVDIMIHGAATIR-------------FDEALKKAVLLNTRGTKMMLSLAKEM---- 235 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~-------------~~~~~~~~~~~Nv~gt~~ll~la~~~---- 235 (614)
.+.. +.+... ...|.++++++... ..+.++..+++|+.|+.++.+++...
T Consensus 61 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~ 134 (248)
T d2o23a1 61 TSEK------DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQN 134 (248)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred cccc------cccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHh
Confidence 7754 333222 24688888765432 13567788999999999999887542
Q ss_pred -----CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH
Q psy6053 236 -----KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE 310 (614)
Q Consensus 236 -----~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~ 310 (614)
.+-.++|++||.++..... ....|+.||+..+.+.+.
T Consensus 135 ~~~~~~~~G~Ii~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~ 176 (248)
T d2o23a1 135 EPDQGGQRGVIINTASVAAFEGQV--------------------------------------GQAAYSASKGGIVGMTLP 176 (248)
T ss_dssp CCCTTSCCEEEEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred hhhccCCceEEEEecchhhccCCC--------------------------------------CchHHHHHHHHHHHHHHH
Confidence 1223799999997643210 014799999998888877
Q ss_pred Hhh----CCCCEEEeecceeecc
Q psy6053 311 AMN----NGMPCLMLRPSIIIPV 329 (614)
Q Consensus 311 ~~~----~glp~~IvRp~~I~g~ 329 (614)
.+. +|+.+..+.||.|-.+
T Consensus 177 la~e~~~~gIrvN~I~PG~i~T~ 199 (248)
T d2o23a1 177 IARDLAPIGIRVMTIAPGLFGTP 199 (248)
T ss_dssp HHHHHGGGTEEEEEEEECCBCCC
T ss_pred HHHHhcccCcceeeeccCceecc
Confidence 665 6899999999988543
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.27 E-value=2.7e-11 Score=118.66 Aligned_cols=218 Identities=11% Similarity=-0.001 Sum_probs=137.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+++||||++.||+.++++|++.|.+ |.+..|+.+.. +.+++... ....+|+++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~---V~i~~r~~~~~---~~~~~~~~-------------------~~~~~dv~~~~ 56 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHT---VACHDESFKQK---DELEAFAE-------------------TYPQLKPMSEQ 56 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCE---EEECCGGGGSH---HHHHHHHH-------------------HCTTSEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCE---EEEEECCHHHH---HHHHhhhC-------------------cEEEeccCCHH
Confidence 7899999999999999999999976 78888875432 22322210 12246777665
Q ss_pred CCCCHHHHHHHh-------ccccEEEEccccc-C---h----hHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEe
Q psy6053 184 LAIKESDRQLLA-------SEVDIMIHGAATI-R---F----DEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHIS 245 (614)
Q Consensus 184 lGLs~~~~~~l~-------~~vd~ViH~AA~v-~---~----~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vS 245 (614)
+.++++ .++|++||+||.. . + .+.++..+++|+.|+..+.+.+... .+-.++|++|
T Consensus 57 ------~~~~~~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~is 130 (252)
T d1zmta1 57 ------EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFIT 130 (252)
T ss_dssp ------SHHHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred ------HHHHHHHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccc
Confidence 343433 3689999999853 2 2 2567888999999998888766431 2346899999
Q ss_pred CceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----CCCCEEEe
Q psy6053 246 TAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN----NGMPCLML 321 (614)
Q Consensus 246 T~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~----~glp~~Iv 321 (614)
|..+..... ....|+.||+..+.+.+..+. +|+++..+
T Consensus 131 S~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I 172 (252)
T d1zmta1 131 SATPFGPWK--------------------------------------ELSTYTSARAGACTLANALSKELGEYNIPVFAI 172 (252)
T ss_dssp CSTTTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred ccccccccc--------------------------------------cccccccccccHHHHHHHHHHHhcccCcEEEEE
Confidence 986533211 014799999988888776654 69999999
Q ss_pred ecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEecc
Q psy6053 322 RPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTS 401 (614)
Q Consensus 322 Rp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~ 401 (614)
.||.|-.+.......-......+ .....+.+.. + -. -+...+|+|++++.++..... --.+++.++.+
T Consensus 173 ~PG~i~T~~~~~~~~~~~~~~~~-e~~~~~~~~~----p---l~--R~g~pedvA~~v~fL~S~~s~--~iTG~~i~vdG 240 (252)
T d1zmta1 173 GPNYLHSEDSPYFYPTEPWKTNP-EHVAHVKKVT----A---LQ--RLGTQKELGELVAFLASGSCD--YLTGQVFWLAG 240 (252)
T ss_dssp EESSBCCBTCCSSCBHHHHTTCH-HHHHHHHHHS----S---SS--SCBCHHHHHHHHHHHHTTSCG--GGTTCEEEEST
T ss_pred ecCCCcCcchhhhhhcccccCCH-HHHHHHHhcC----C---CC--CCcCHHHHHHHHHHHhCchhc--CCcCCeEEECC
Confidence 99998654322110000000011 1122221111 0 00 145678999999988854321 12678888877
Q ss_pred C
Q psy6053 402 S 402 (614)
Q Consensus 402 ~ 402 (614)
|
T Consensus 241 G 241 (252)
T d1zmta1 241 G 241 (252)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.2e-11 Score=119.34 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=133.7
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
.++||++||||||+.||+.++++|++.|.+ |++..|.. +++++..+. +.. . ...++..+.+|
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~---Vil~~r~~------~~l~~~~~~-----~~~---~-~~~~~~~~~~d 72 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAH---VVVTARSK------ETLQKVVSH-----CLE---L-GAASAHYIAGT 72 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHHH-----HHH---H-TCSEEEEEECC
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE---EEEEECCH------HHHHHHHHH-----Hhh---h-hcccchhhhhh
Confidence 368999999999999999999999999976 89999863 444443221 000 1 34578889999
Q ss_pred CCCCCCCCCHHHHHHH-------hccccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc-C-CCceEE
Q psy6053 179 AEADELAIKESDRQLL-------ASEVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM-K-HLELFV 242 (614)
Q Consensus 179 l~~~~lGLs~~~~~~l-------~~~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~-~-~~k~~V 242 (614)
+++.. ....+ ...+|+++++|+... ..+.+...+++|+.|+..+.+.+..+ . +-.++|
T Consensus 73 ~~~~~------~~~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii 146 (269)
T d1xu9a_ 73 MEDMT------FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIV 146 (269)
T ss_dssp TTCHH------HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred hhhHH------HHHHHHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcce
Confidence 98755 33332 236899999998643 13567778999999988887766531 1 225789
Q ss_pred EEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh------CCC
Q psy6053 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN------NGM 316 (614)
Q Consensus 243 ~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~------~gl 316 (614)
.+||..+.... |. -..|+.||+..+.+.+..+. .++
T Consensus 147 ~isS~~~~~~~----------p~----------------------------~~~Y~asKaal~~~~~~La~El~~~~~~I 188 (269)
T d1xu9a_ 147 VVSSLAGKVAY----------PM----------------------------VAAYSASKFALDGFFSSIRKEYSVSRVNV 188 (269)
T ss_dssp EEEEGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EeccchhcCCC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHhhhcCCCE
Confidence 99998653221 10 15899999988877766543 357
Q ss_pred CEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHh
Q psy6053 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWA 385 (614)
Q Consensus 317 p~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~ 385 (614)
.+..+.||.|-.+ +......+ .......+.+++|+.++.....
T Consensus 189 ~V~~v~PG~v~T~-----------------~~~~~~~~---------~~~~~~~~~e~~a~~i~~~~~~ 231 (269)
T d1xu9a_ 189 SITLCVLGLIDTE-----------------TAMKAVSG---------IVHMQAAPKEECALEIIKGGAL 231 (269)
T ss_dssp EEEEEEECCBCCH-----------------HHHHHSCG---------GGGGGCBCHHHHHHHHHHHHHT
T ss_pred EEEEEecCcCCCc-----------------HHHHhccC---------CccccCCCHHHHHHHHHHHhhc
Confidence 7888999877221 22222221 1223456788999988876644
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.1e-10 Score=114.34 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=144.2
Q ss_pred ccCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+++||+||||||+| -||+.++++|++.|.+ |++..|+.+. .+++++... ...+...+.
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~---V~i~~~~~~~---~~~~~~~~~--------------~~~~~~~~~ 61 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE---LAFTYQNDKL---KGRVEEFAA--------------QLGSDIVLQ 61 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE---EEEEESSTTT---HHHHHHHHH--------------HTTCCCEEE
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE---EEEEeCCHHH---HHHHHHHHh--------------hcCCcceee
Confidence 46899999999998 6889999999999977 7788887442 344444322 223556778
Q ss_pred CCCCCCCCCCCHHHHHHHh-------ccccEEEEcccccCh------------hHHHHHHHHHhHHHHHHHHHHHHHc-C
Q psy6053 177 GDAEADELAIKESDRQLLA-------SEVDIMIHGAATIRF------------DEALKKAVLLNTRGTKMMLSLAKEM-K 236 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~~-~ 236 (614)
.|+++.. +..... ...|+++|+|+.... .+.+.....+|+.+...+.+.+..+ .
T Consensus 62 ~~~~~~~------~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (258)
T d1qsga_ 62 CDVAEDA------SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN 135 (258)
T ss_dssp CCTTCHH------HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEE
T ss_pred cccchHH------HHHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8887754 443333 257999999986432 1234556788888888888877653 2
Q ss_pred CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh---
Q psy6053 237 HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN--- 313 (614)
Q Consensus 237 ~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~--- 313 (614)
+-..++++||..+.... | ....|+.||+.-+.+++..+.
T Consensus 136 ~~~~Ii~iss~~~~~~~----------~----------------------------~~~~Y~~sKaal~~ltr~lA~el~ 177 (258)
T d1qsga_ 136 PGSALLTLSYLGAERAI----------P----------------------------NYNVMGLAKASLEANVRYMANAMG 177 (258)
T ss_dssp EEEEEEEEECGGGTSBC----------T----------------------------TTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEecchhhccCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHHhC
Confidence 23468888887642211 0 015799999999988877665
Q ss_pred -CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCC
Q psy6053 314 -NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEH 392 (614)
Q Consensus 314 -~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~ 392 (614)
+|+++..++||.|..+..+ + ............. .. + - --+...+|+|+++..++.+... --
T Consensus 178 ~~gIrVN~I~PG~i~T~~~~----~---~~~~~~~~~~~~~-~~---p---l--~R~~~peeia~~v~fL~s~~s~--~i 239 (258)
T d1qsga_ 178 PEGVRVNAISAGPIRTLAAS----G---IKDFRKMLAHCEA-VT---P---I--RRTVTIEDVGNSAAFLCSDLSA--GI 239 (258)
T ss_dssp TTTEEEEEEEECCCCCTTGG----G---STTHHHHHHHHHH-HS---T---T--SSCCCHHHHHHHHHHHTSGGGT--TC
T ss_pred ccCceeeccccccccccccc----c---cchhhhHHHHHHh-CC---C---C--CCCcCHHHHHHHHHHHhCchhc--Cc
Confidence 6899999999998654321 1 1111222222211 10 0 0 0145579999999888854331 23
Q ss_pred CccEEEeccC
Q psy6053 393 RQSIVHLTSS 402 (614)
Q Consensus 393 ~~~vyni~~~ 402 (614)
.+.+..+..|
T Consensus 240 tG~~i~vDGG 249 (258)
T d1qsga_ 240 SGEVVHVDGG 249 (258)
T ss_dssp CSCEEEESTT
T ss_pred cCceEEECcC
Confidence 6788888776
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3e-11 Score=119.90 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=89.9
Q ss_pred CcEE-EEecccccccHHHHHHHHhh-CCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 102 GKTL-FMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 102 ~~~V-LITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
||+| +||||++.||..++++|++. |. +|++..|+. +++++..+ .++. ...++.++.+|+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~---~Vi~~~r~~------~~~~~~~~-----~l~~-----~~~~~~~~~~Dv 62 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG---DVVLTARDV------TRGQAAVQ-----QLQA-----EGLSPRFHQLDI 62 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS---EEEEEESSH------HHHHHHHH-----HHHH-----TTCCCEEEECCT
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC---EEEEEECCH------HHHHHHHH-----HHHh-----cCCcEEEEEEec
Confidence 6666 99999999999999999987 54 488888874 33333221 1222 234688999999
Q ss_pred CCCCCCCCHHHHHHHhc-------cccEEEEcccccC-------hhHHHHHHHHHhHHHHHHHHHHHHHc-CCCceEEEE
Q psy6053 180 EADELAIKESDRQLLAS-------EVDIMIHGAATIR-------FDEALKKAVLLNTRGTKMMLSLAKEM-KHLELFVHI 244 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~-------~vd~ViH~AA~v~-------~~~~~~~~~~~Nv~gt~~ll~la~~~-~~~k~~V~v 244 (614)
++.+ +.+++++ .+|++||+||... ..+.++..+++|+.|+..+.+.+... +.-.++|.+
T Consensus 63 s~~~------sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 63 DDLQ------SIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp TCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 9976 5554443 6899999999743 24567778999999999999888652 222479999
Q ss_pred eCcee
Q psy6053 245 STAYC 249 (614)
Q Consensus 245 ST~~~ 249 (614)
||..+
T Consensus 137 sS~~~ 141 (275)
T d1wmaa1 137 SSIMS 141 (275)
T ss_dssp CCHHH
T ss_pred cccce
Confidence 99854
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.15 E-value=6.2e-10 Score=109.91 Aligned_cols=222 Identities=10% Similarity=0.032 Sum_probs=134.6
Q ss_pred ccCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
+++||++|||||+| .||..++++|++.|.+ |++..|+++ ..++++++.+ ......++.
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~---V~i~~r~~~---~~~~~~~l~~--------------~~~~~~~~~ 61 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT---LAFTYLNES---LEKRVRPIAQ--------------ELNSPYVYE 61 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE---EEEEESSTT---THHHHHHHHH--------------HTTCCCEEE
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE---EEEEeCCHH---HHHHHHHHHh--------------hCCceeEee
Confidence 46899999999987 7999999999999987 888898743 3345544322 223456778
Q ss_pred CCCCCCCCCCCHHHHHHHh-------ccccEEEEcccccChh--------HHHHH---HHHHhHHHHHHHHHHHHHcCCC
Q psy6053 177 GDAEADELAIKESDRQLLA-------SEVDIMIHGAATIRFD--------EALKK---AVLLNTRGTKMMLSLAKEMKHL 238 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~-------~~vd~ViH~AA~v~~~--------~~~~~---~~~~Nv~gt~~ll~la~~~~~~ 238 (614)
.|++++. +.+.++ ..+|+++|+|+..... ..... ....+..+............+.
T Consensus 62 ~d~~~~~------~~~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (274)
T d2pd4a1 62 LDVSKEE------HFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN 135 (274)
T ss_dssp CCTTCHH------HHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE
T ss_pred ecccchh------hHHHHHHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccccccccc
Confidence 9998765 544444 3689999999964321 11122 2333333444444444332233
Q ss_pred ceEEEEeCc-eeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh----
Q psy6053 239 ELFVHISTA-YCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN---- 313 (614)
Q Consensus 239 k~~V~vST~-~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~---- 313 (614)
...+.++|. ...... .....|+.+|...+.+.+..+.
T Consensus 136 ~~~i~~~s~~~~~~~~--------------------------------------~~~~~y~asK~al~~ltr~lA~e~~~ 177 (274)
T d2pd4a1 136 GASVLTLSYLGSTKYM--------------------------------------AHYNVMGLAKAALESAVRYLAVDLGK 177 (274)
T ss_dssp EEEEEEEECGGGTSBC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccceeeeccccccccc--------------------------------------ccchhhhHHHHHHHHHHHhhHHHhcC
Confidence 344444443 322211 1125799999999988876554
Q ss_pred CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCC
Q psy6053 314 NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393 (614)
Q Consensus 314 ~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~ 393 (614)
+|+++..+.||.+..+... ............... ....-+...+|+|++++.++..... -..
T Consensus 178 ~GIrvN~I~PG~v~T~~~~-------~~~~~~~~~~~~~~~---------~p~~r~~~pedIA~~v~fL~S~~s~--~it 239 (274)
T d2pd4a1 178 HHIRVNALSAGPIRTLASS-------GIADFRMILKWNEIN---------APLRKNVSLEEVGNAGMYLLSSLSS--GVS 239 (274)
T ss_dssp TTCEEEEEEECCCCCTTGG-------GSTTHHHHHHHHHHH---------STTSSCCCHHHHHHHHHHHHSGGGT--TCC
T ss_pred cCceecccccCcccCcccc-------ccCchHHHHHHHhhh---------hhccCCcCHHHHHHHHHHHhChhhC--CCc
Confidence 7899999999987544221 111111111111110 0111246789999999988865431 237
Q ss_pred ccEEEeccC
Q psy6053 394 QSIVHLTSS 402 (614)
Q Consensus 394 ~~vyni~~~ 402 (614)
+.++.+..|
T Consensus 240 G~~i~vDGG 248 (274)
T d2pd4a1 240 GEVHFVDAG 248 (274)
T ss_dssp SCEEEESTT
T ss_pred CceEEECCC
Confidence 888988877
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.10 E-value=2.1e-10 Score=110.97 Aligned_cols=205 Identities=14% Similarity=0.140 Sum_probs=132.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|++||||||+.||+.++++|++.|.+ |++..|.+.+ .+...+.+|++.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~---V~i~~~~~~~----------------------------~~~~~~~~d~~~ 49 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYR---VVVLDLRREG----------------------------EDLIYVEGDVTR 49 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCE---EEEEESSCCS----------------------------SSSEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCccc----------------------------ccceEeeccccc
Confidence 489999999999999999999999976 8888887543 235567889887
Q ss_pred CCCCCCHHHHHHHhc------cccEEEEccccc-----------ChhHHHHHHHHHhHHHHHHHHHHHHHc---------
Q psy6053 182 DELAIKESDRQLLAS------EVDIMIHGAATI-----------RFDEALKKAVLLNTRGTKMMLSLAKEM--------- 235 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~------~vd~ViH~AA~v-----------~~~~~~~~~~~~Nv~gt~~ll~la~~~--------- 235 (614)
.. ....+.. ..+.+++.++.. ...+.++..+++|+.+...+...+...
T Consensus 50 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 123 (241)
T d1uaya_ 50 EE------DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAE 123 (241)
T ss_dssp HH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTT
T ss_pred hh------hhHHHHHhhhccccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Confidence 54 2333221 334555544421 113456778899999988887766442
Q ss_pred CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh--
Q psy6053 236 KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-- 313 (614)
Q Consensus 236 ~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~-- 313 (614)
.+-.++|++||..+..... ....|+.||+.-+.+.+..+.
T Consensus 124 ~~~G~Ii~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el 165 (241)
T d1uaya_ 124 GQRGVIVNTASVAAFEGQI--------------------------------------GQAAYAASKGGVVALTLPAAREL 165 (241)
T ss_dssp SCSEEEEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeeeeecchhhccCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHH
Confidence 1234799999986633210 125799999988888876654
Q ss_pred --CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCC
Q psy6053 314 --NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKE 391 (614)
Q Consensus 314 --~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~ 391 (614)
+|+++..+.||.|-.+... ... ............ +.+ -+.-.+|+|++++.++....
T Consensus 166 a~~gIrVN~V~PG~i~T~~~~-------~~~--~~~~~~~~~~~~--~~~------R~g~pedvA~~v~fL~s~~~---- 224 (241)
T d1uaya_ 166 AGWGIRVVTVAPGLFDTPLLQ-------GLP--EKAKASLAAQVP--FPP------RLGRPEEYAALVLHILENPM---- 224 (241)
T ss_dssp GGGTEEEEEEEECSCSSHHHH-------TSC--HHHHHHHHTTCC--SSC------SCCCHHHHHHHHHHHHHCTT----
T ss_pred hhcCCceeeecCCcccccccc-------hhh--hhHHHHHHhcCC--CCC------CCcCHHHHHHHHHHHHhCCC----
Confidence 6899999999988543211 111 111112222110 000 13357899999998886432
Q ss_pred CCccEEEeccC
Q psy6053 392 HRQSIVHLTSS 402 (614)
Q Consensus 392 ~~~~vyni~~~ 402 (614)
-.+++.++.+|
T Consensus 225 iTG~~i~VDGG 235 (241)
T d1uaya_ 225 LNGEVVRLDGA 235 (241)
T ss_dssp CCSCEEEESTT
T ss_pred CCCCEEEECCc
Confidence 36888888766
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.07 E-value=1.8e-10 Score=113.45 Aligned_cols=230 Identities=11% Similarity=0.035 Sum_probs=135.3
Q ss_pred ccCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 99 TFTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 99 ~~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
.++||++|||||+| .||..++++|++.|.+ |++..|++. ...+++.+. ...+...++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~---Vil~~~~~~--~~~~~~~~~----------------~~~~~~~~~ 61 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ---LVLTGFDRL--RLIQRITDR----------------LPAKAPLLE 61 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCE---EEEEECSCH--HHHHHHHTT----------------SSSCCCEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCE---EEEEeCChH--HHHHHHHHH----------------cCCceeeEe
Confidence 47899999999765 5999999999999976 777777642 111222211 335677889
Q ss_pred CCCCCCCCCCCHHHHHHHh----------ccccEEEEcccccCh------------hHHHHHHHHHhHHHHHHHHHHHHH
Q psy6053 177 GDAEADELAIKESDRQLLA----------SEVDIMIHGAATIRF------------DEALKKAVLLNTRGTKMMLSLAKE 234 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~----------~~vd~ViH~AA~v~~------------~~~~~~~~~~Nv~gt~~ll~la~~ 234 (614)
+|+++++ +.+.+. ..+|+++|+|+.... ...+...+.+|+.+.......+..
T Consensus 62 ~dv~~~~------~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (268)
T d2h7ma1 62 LDVQNEE------HLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLP 135 (268)
T ss_dssp CCTTCHH------HHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred eeccccc------ccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhh
Confidence 9999864 333332 247999999985321 123344567777777777666665
Q ss_pred cCCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHHHhh-
Q psy6053 235 MKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN- 313 (614)
Q Consensus 235 ~~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~~~~- 313 (614)
..+-...+.++|....... +....|+.+|...+.+.+..+.
T Consensus 136 ~~~~~~~i~~~s~~~~~~~--------------------------------------p~~~~y~~sK~a~~~ltr~lA~e 177 (268)
T d2h7ma1 136 IMNPGGSIVGMDFDPSRAM--------------------------------------PAYNWMTVAKSALESVNRFVARE 177 (268)
T ss_dssp GEEEEEEEEEEECCCSSCC--------------------------------------TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccC--------------------------------------cccchhhccccchhhccccchhh
Confidence 4333344444443322111 1125899999999988877655
Q ss_pred ---CCCCEEEeecceeecccCCCCccccCCCCchHH--HHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhh
Q psy6053 314 ---NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTG--LLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLS 388 (614)
Q Consensus 314 ---~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~--~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~ 388 (614)
+|+.+..+.||.|-.+..+.+.+ ...+... ........... .....+-+...+|+|+++..++.....
T Consensus 178 ~~~~gIrVN~V~PG~v~T~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~pl~rr~~~p~dva~~v~fL~Sd~a~ 250 (268)
T d2h7ma1 178 AGKYGVRSNLVAAGPIRTLAMSAIVG---GALGEEAGAQIQLLEEGWDQ----RAPIGWNMKDATPVAKTVCALLSDWLP 250 (268)
T ss_dssp HHTTTCEEEEEEECCCCCHHHHHHHT---TTTCHHHHHHHHHHHHHHHH----HCTTCCCTTCCHHHHHHHHHHHSSSCT
T ss_pred hhccCCcceEEecCCCCChhhhhhcc---chhhhhhccchHHHHHHHHh----cCCCCCCCCCHHHHHHHHHHHhCchhc
Confidence 68999999999885442211110 1111110 00000000000 000112245578999999988843221
Q ss_pred cCCCCccEEEeccC
Q psy6053 389 QKEHRQSIVHLTSS 402 (614)
Q Consensus 389 ~~~~~~~vyni~~~ 402 (614)
--.+.+..+.+|
T Consensus 251 --~iTG~~i~vDGG 262 (268)
T d2h7ma1 251 --ATTGDIIYADGG 262 (268)
T ss_dssp --TCCSEEEEESTT
T ss_pred --CccCCEEEECcC
Confidence 136778888776
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=98.92 E-value=2.3e-08 Score=98.72 Aligned_cols=223 Identities=12% Similarity=0.084 Sum_probs=133.2
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
.++||||++.||+.++++|++.|.+ |++..|.... ..+.+.+.++ .. .......+.+|.+...
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~---V~i~~~~~~~--~~~~~~~~l~--------~~----~~~~~~~~~~d~~~~~ 66 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYA---VCLHYHRSAA--EANALSATLN--------AR----RPNSAITVQADLSNVA 66 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHHHH--------HH----STTCEEEEECCCSSSC
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCE---EEEEeCCCHH--HHHHHHHHHH--------hh----cCCceEEEEeeccccc
Confidence 5799999999999999999999976 6666665321 1222322211 11 2234555665544322
Q ss_pred C----------CCC-HHHHHHHh-------ccccEEEEcccccCh---------------------hHHHHHHHHHhHHH
Q psy6053 184 L----------AIK-ESDRQLLA-------SEVDIMIHGAATIRF---------------------DEALKKAVLLNTRG 224 (614)
Q Consensus 184 l----------GLs-~~~~~~l~-------~~vd~ViH~AA~v~~---------------------~~~~~~~~~~Nv~g 224 (614)
- .++ .++.++++ .++|++||+||.... ...+...+.+|+.+
T Consensus 67 ~~~~~~~~~~~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 146 (284)
T d1e7wa_ 67 TAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIA 146 (284)
T ss_dssp BCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHH
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheee
Confidence 1 011 22455544 368999999996421 01223467889999
Q ss_pred HHHHHHHHHHc---------CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCC
Q psy6053 225 TKMMLSLAKEM---------KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPN 295 (614)
Q Consensus 225 t~~ll~la~~~---------~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn 295 (614)
+..+.+.+... .+...++.+||........ ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~s~~~~~~~~--------------------------------------~~~ 188 (284)
T d1e7wa_ 147 PYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLL--------------------------------------GYT 188 (284)
T ss_dssp HHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCCT--------------------------------------TCH
T ss_pred eeeeeccccchhhhhHHHhcCCCCcccccccccccCCcc--------------------------------------cee
Confidence 98888876542 1223567777765422110 014
Q ss_pred chhhhHHHHHHHHHHHhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCcccccee
Q psy6053 296 SYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLP 371 (614)
Q Consensus 296 ~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vp 371 (614)
.|+.||+..+.+.+..+. +|+.+..+.||.+-... . .+............ . .--+..
T Consensus 189 ~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~---------~--~~~~~~~~~~~~~p----l----~~R~~~ 249 (284)
T d1e7wa_ 189 IYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD---------D--MPPAVWEGHRSKVP----L----YQRDSS 249 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG---------G--SCHHHHHHHHTTCT----T----TTSCBC
T ss_pred eeccccccchhhhHHHHHHhCCccccccccccccccccc---------c--CCHHHHHHHHhcCC----C----CCCCCC
Confidence 799999988888877654 68999999999632111 1 11223333332211 0 011446
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 372 VDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 372 VDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
.+|+|++++.++..... -..|+++.+.+|
T Consensus 250 peeiA~~v~fL~S~~s~--~itG~~i~VDGG 278 (284)
T d1e7wa_ 250 AAEVSDVVIFLCSSKAK--YITGTCVKVDGG 278 (284)
T ss_dssp HHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred HHHHHHHHHHHhCchhc--CccCCeEEECcC
Confidence 78999999988854431 136788888777
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.89 E-value=6.1e-08 Score=94.53 Aligned_cols=221 Identities=12% Similarity=0.068 Sum_probs=131.0
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+.+||||++-||+.++++|++.|.+ |++..|.... ..+++.+.+ ... ...+...+..|+.+..
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~---Vvi~~r~~~~--~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~ 65 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFR---VVVHYRHSEG--AAQRLVAEL--------NAA----RAGSAVLCKGDLSLSS 65 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCE---EEEEESSCHH--HHHHHHHHH--------HHH----STTCEEEEECCCSSST
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECCchH--HHHHHHHHH--------Hhh----cCCceEEEecccccch
Confidence 5799999999999999999999976 8888887432 122322211 111 3346667777665533
Q ss_pred CCCCHHHHHHHh-------ccccEEEEcccccCh------------------hHHHHHHHHHhHHHHHHHHHHHHHcC--
Q psy6053 184 LAIKESDRQLLA-------SEVDIMIHGAATIRF------------------DEALKKAVLLNTRGTKMMLSLAKEMK-- 236 (614)
Q Consensus 184 lGLs~~~~~~l~-------~~vd~ViH~AA~v~~------------------~~~~~~~~~~Nv~gt~~ll~la~~~~-- 236 (614)
- .++...+++ .++|++||+||.... +.........|..+.......+....
T Consensus 66 ~--~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (266)
T d1mxha_ 66 S--LLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGE 143 (266)
T ss_dssp T--HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--
T ss_pred h--HHHHHHHHHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhcccccc
Confidence 1 122233332 368999999995321 22233456667766666665555421
Q ss_pred ------CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHHHH
Q psy6053 237 ------HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVE 310 (614)
Q Consensus 237 ------~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv~~ 310 (614)
....++.+|+..+.... +....|+.||+.-+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~Y~asKaal~~lt~~ 185 (266)
T d1mxha_ 144 GGAWRSRNLSVVNLCDAMTDLPL--------------------------------------PGFCVYTMAKHALGGLTRA 185 (266)
T ss_dssp -----CCCEEEEEECCGGGGSCC--------------------------------------TTCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhccccccC--------------------------------------cchhhhhhhHHHHhhhHHH
Confidence 11234444444332111 1125799999988888776
Q ss_pred Hhh----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhh
Q psy6053 311 AMN----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAY 386 (614)
Q Consensus 311 ~~~----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~ 386 (614)
.+. +|+++..+.||.|..+.. .+......+..... ..+-+...+|+|++++.++...
T Consensus 186 lA~e~~~~gIrVN~I~PG~i~t~~~-----------~~~~~~~~~~~~~p--------l~r~~~~peeva~~v~fL~s~~ 246 (266)
T d1mxha_ 186 AALELAPRHIRVNAVAPGLSLLPPA-----------MPQETQEEYRRKVP--------LGQSEASAAQIADAIAFLVSKD 246 (266)
T ss_dssp HHHHHGGGTEEEEEEEESSBSCCSS-----------SCHHHHHHHHTTCT--------TTSCCBCHHHHHHHHHHHHSGG
T ss_pred HHHHhCccCcEEEEeccCcEecccc-----------CCHHHHHHHHhcCC--------CCCCCCCHHHHHHHHHHHhCch
Confidence 655 689999999998743311 12222233222110 0011346789999999888654
Q ss_pred hhcCCCCccEEEeccC
Q psy6053 387 LSQKEHRQSIVHLTSS 402 (614)
Q Consensus 387 ~~~~~~~~~vyni~~~ 402 (614)
.. --.|+++++.+|
T Consensus 247 s~--~itG~~i~vDGG 260 (266)
T d1mxha_ 247 AG--YITGTTLKVDGG 260 (266)
T ss_dssp GT--TCCSCEEEESTT
T ss_pred hC--CccCCeEEECcc
Confidence 31 136788888776
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=98.87 E-value=3e-08 Score=98.54 Aligned_cols=243 Identities=11% Similarity=0.000 Sum_probs=136.2
Q ss_pred cCCcEEEEecccc--cccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 100 FTGKTLFMTGASG--FLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 100 ~~~~~VLITGaTG--FlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
++||++|||||+| -||+.++++|++.|.+ |++..|++........++. ....-.....+.......++..+..
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~---Vvi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE---ILVGTWVPALNIFETSLRR--GKFDQSRVLPDGSLMEIKKVYPLDA 80 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE---EEEEEEHHHHHHHHHHHHT--TTTTGGGBCTTSSBCCEEEEEEECT
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCE---EEEEeCchhhhhhHHHHHH--hhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 6899999999987 7999999999999976 7777776422111111110 0000000000000001123444544
Q ss_pred CCCCCCCC------------CCHHHHHHH-------hccccEEEEcccccC-----h----hHHHHHHHHHhHHHHHHHH
Q psy6053 178 DAEADELA------------IKESDRQLL-------ASEVDIMIHGAATIR-----F----DEALKKAVLLNTRGTKMML 229 (614)
Q Consensus 178 Dl~~~~lG------------Ls~~~~~~l-------~~~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv~gt~~ll 229 (614)
++..+..- .+....+++ ..++|++||+||... + .+.+...+++|+.++..+.
T Consensus 81 ~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~ 160 (297)
T d1d7oa_ 81 VFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLL 160 (297)
T ss_dssp TCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred hccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhh
Confidence 44332210 000011222 236899999998632 2 2457788999999999999
Q ss_pred HHHHHcC-CCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhHHHHHHHH
Q psy6053 230 SLAKEMK-HLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLV 308 (614)
Q Consensus 230 ~la~~~~-~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK~~aE~lv 308 (614)
+.+.... .-...+.+|+........ ..+..|+.+|+..+.+.
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------------------------~~~~~y~~aKaa~~~l~ 203 (297)
T d1d7oa_ 161 SHFLPIMNPGGASISLTYIASERIIP-------------------------------------GYGGGMSSAKAALESDT 203 (297)
T ss_dssp HHHGGGEEEEEEEEEEECGGGTSCCT-------------------------------------TCTTTHHHHHHHHHHHH
T ss_pred hHHHHHhhcCCcceeeeehhhccccc-------------------------------------ccccceecccccccccc
Confidence 8876531 112355555553321110 11257999998887776
Q ss_pred HHHhh-----CCCCEEEeecceeecccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHH
Q psy6053 309 VEAMN-----NGMPCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAI 383 (614)
Q Consensus 309 ~~~~~-----~glp~~IvRp~~I~g~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~ 383 (614)
+.... +|+++..+.||.|..+... .......+........+ .--+...+|+|++++.++
T Consensus 204 ~~~a~e~~~~~gIrvN~I~PG~i~T~~~~-------~~~~~~~~~~~~~~~~P---------lgR~~~peevA~~v~fL~ 267 (297)
T d1d7oa_ 204 RVLAFEAGRKQNIRVNTISAGPLGSRAAK-------AIGFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLV 267 (297)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCBCCCSS-------CCSHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHT
T ss_pred cccchhccccceEEecccccccccchhhh-------hccCCHHHHHHHHhCCC---------CCCCCCHHHHHHHHHHHh
Confidence 54322 4899999999988554322 11222223333222110 011346789999998888
Q ss_pred HhhhhcCCCCccEEEeccC
Q psy6053 384 WAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 384 ~~~~~~~~~~~~vyni~~~ 402 (614)
..... --.+++..+.+|
T Consensus 268 S~~a~--~itGq~i~vDGG 284 (297)
T d1d7oa_ 268 SPLAS--AITGATIYVDNG 284 (297)
T ss_dssp SGGGT--TCCSCEEEESTT
T ss_pred Cchhc--CCcCceEEECcC
Confidence 54331 136788888766
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.85 E-value=5.2e-08 Score=98.57 Aligned_cols=178 Identities=8% Similarity=0.051 Sum_probs=110.0
Q ss_pred CCcEEEEec--ccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCC
Q psy6053 101 TGKTLFMTG--ASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGD 178 (614)
Q Consensus 101 ~~~~VLITG--aTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gD 178 (614)
++|.+|||| ++.-||..+++.|.+.|.+ |++..|+.... ...........-........+ ..........|
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~---V~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 73 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVK---IIFGIWPPVYN---IFMKNYKNGKFDNDMIIDKDK-KMNILDMLPFD 73 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCE---EEEEECGGGHH---HHHHHHHTTTTTGGGEETTTE-ECCEEEEEECC
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCE---EEEEeCchhhh---hhhHHHHHHhhhhHHHHHHHh-hhhhhhccccc
Confidence 368899999 5568999999999999976 77776654321 112111111110111100111 11223344444
Q ss_pred CC--------------------CCCCCCCHHHHHHH-------hccccEEEEcccccC-----h----hHHHHHHHHHhH
Q psy6053 179 AE--------------------ADELAIKESDRQLL-------ASEVDIMIHGAATIR-----F----DEALKKAVLLNT 222 (614)
Q Consensus 179 l~--------------------~~~lGLs~~~~~~l-------~~~vd~ViH~AA~v~-----~----~~~~~~~~~~Nv 222 (614)
.. +.. +.+.+ ..++|++||+||... + .+.+...+++|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~ 147 (329)
T d1uh5a_ 74 ASFDTANDIDEETKNNKRYNMLQNY------TIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSS 147 (329)
T ss_dssp TTCSSGGGCCHHHHTSHHHHTCCCC------SHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred ceehhhcccchhhhhhhhhhhhhHH------HHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccch
Confidence 33 222 22222 347899999998532 2 256788899999
Q ss_pred HHHHHHHHHHHHc-CCCceEEEEeCceeccCCcccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCCCCchhhhH
Q psy6053 223 RGTKMMLSLAKEM-KHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTK 301 (614)
Q Consensus 223 ~gt~~ll~la~~~-~~~k~~V~vST~~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~pn~Y~~SK 301 (614)
.|+..+.+.+... +.-.++|.+||..+.... | ++...|+.||
T Consensus 148 ~~~~~~~k~~~~~m~~~GsIv~iss~~~~~~~--------p-----------------------------~y~~~y~asK 190 (329)
T d1uh5a_ 148 YSLISLCKYFVNIMKPQSSIISLTYHASQKVV--------P-----------------------------GYGGGMSSAK 190 (329)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEEECGGGTSCC--------T-----------------------------TCTTTHHHHH
T ss_pred hHHHHHHHHHHhhcccccccccceeehhcccc--------c-----------------------------ccchhhhhhh
Confidence 9999988887663 333578888887543211 0 1125689999
Q ss_pred HHHHHHHHHHhh-----CCCCEEEeecceeec
Q psy6053 302 CLSEGLVVEAMN-----NGMPCLMLRPSIIIP 328 (614)
Q Consensus 302 ~~aE~lv~~~~~-----~glp~~IvRp~~I~g 328 (614)
+..|.+++..+. +|+++..+.||.|--
T Consensus 191 aal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 191 AALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred ccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 988888876543 489999999998744
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=98.68 E-value=3e-07 Score=89.05 Aligned_cols=234 Identities=14% Similarity=0.010 Sum_probs=123.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|.|+||||+|.||+.++++|++.|.+ |++..|++.. ...|+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~---V~~~~~~~~~---------------------------------~~~d~~~ 44 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQ---IVGIDIRDAE---------------------------------VIADLST 44 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSSSS---------------------------------EECCTTS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE---EEEEECChHH---------------------------------HHHHhcC
Confidence 378999999999999999999999976 8888886432 1234443
Q ss_pred CCCCCCHHHHHHH----hccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHc---CCCceEEEEeCceeccCCc
Q psy6053 182 DELAIKESDRQLL----ASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEM---KHLELFVHISTAYCHLQEK 254 (614)
Q Consensus 182 ~~lGLs~~~~~~l----~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~---~~~k~~V~vST~~~~~~~~ 254 (614)
..- . ....... ...+|+++|+|+.......+.....+|..+...+.+..... ........+++........
T Consensus 45 ~~~-~-~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (257)
T d1fjha_ 45 AEG-R-KQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAF 122 (257)
T ss_dssp HHH-H-HHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCG
T ss_pred HHH-H-HHHHHHHHHHhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhh
Confidence 220 0 0001111 13589999999876656666777788888887776654331 2334555555543211110
Q ss_pred ccccccCCCCCChhHHHHHHhhcchhHHhhhhhhhcCCC--CCchhhhHHHHHHHHHHHhh----CCCCEEEeecceeec
Q psy6053 255 VLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEF--PNSYAYTKCLSEGLVVEAMN----NGMPCLMLRPSIIIP 328 (614)
Q Consensus 255 ~i~E~~~~~p~~~~~~~~~~~~~~~~~l~~~~p~~~~~~--pn~Y~~SK~~aE~lv~~~~~----~glp~~IvRp~~I~g 328 (614)
.. . +. .. ....-..-.+..+. ...+.. ...|+.||+..+.+.+..+. +|+++..+.||.|-.
T Consensus 123 ~~----~--~~---~~--~~~~g~~~~i~s~~-~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T 190 (257)
T d1fjha_ 123 DK----N--PL---AL--ALEAGEEAKARAIV-EHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATET 190 (257)
T ss_dssp GG----C--TT---HH--HHHHTCHHHHHHHH-HTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---
T ss_pred hh----h--hh---hh--hccCCcEEEEeeeh-hccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCC
Confidence 00 0 00 00 00000000000000 000011 12599999999998887654 799999999998854
Q ss_pred ccCCCCccccCCCCchHHHHHHHhcCceeeEeeCCCccccceeHHHHHHHHHHHHHhhhhcCCCCccEEEeccC
Q psy6053 329 VWREPLPGWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSS 402 (614)
Q Consensus 329 ~~~~p~~gw~d~~~g~~~~~~~~~~g~~~~~~~~~~~~~d~vpVDdva~aii~~~~~~~~~~~~~~~vyni~~~ 402 (614)
+.-+. . ...........+.. .+ .--+...+|+|+++..++..... --.+++..+.+|
T Consensus 191 ~~~~~------~-~~~~~~~~~~~~~~------~P--lgR~g~p~eva~~v~fL~S~~s~--~itG~~i~vDGG 247 (257)
T d1fjha_ 191 PLLQA------G-LQDPRYGESIAKFV------PP--MGRRAEPSEMASVIAFLMSPAAS--YVHGAQIVIDGG 247 (257)
T ss_dssp -------------------------CC------CS--TTSCCCTHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred hhHHh------h-cCCHHHHHHHHhcC------CC--CCCCcCHHHHHHHHHHHhCchhC--CccCceEEeCCC
Confidence 32110 0 00000111111100 00 11134579999999988754431 136778888665
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.57 E-value=1.8e-08 Score=93.81 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=64.0
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
..++||+|+||||+|.+|+.+++.|++.|.+ |++..|.. ++++++.+ .+. ...++....+
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~---V~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~ 78 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE---VVLCGRKL------DKAQAAAD-----SVN------KRFKVNVTAA 78 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSH------HHHHHHHH-----HHH------HHHTCCCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccc---hhhcccch------HHHHHHHH-----HHH------hccchhhhhh
Confidence 3467999999999999999999999999865 88899974 33333321 111 1123456788
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccc
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~ 207 (614)
|++++. +.+++++++|+|||+|+.
T Consensus 79 d~~~~~------~~~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 79 ETADDA------SRAEAVKGAHFVFTAGAI 102 (191)
T ss_dssp ECCSHH------HHHHHTTTCSEEEECCCT
T ss_pred hcccHH------HHHHHhcCcCeeeecCcc
Confidence 998865 889999999999999985
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.21 E-value=0.00068 Score=58.78 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=77.7
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|.|.||+|.+|++++..|..++. +.++.+++..+. ...-.++. +.. .......+. . .
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~~~----~~~a~Dl~-----------~~~-~~~~~~~~~---~-~- 59 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHT----PGVAADLS-----------HIE-TRATVKGYL---G-P- 59 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSSH----HHHHHHHT-----------TSS-SSCEEEEEE---S-G-
T ss_pred eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecccc----chhhHHHh-----------hhh-hhcCCCeEE---c-C-
Confidence 689999999999999988887753 567888886531 11111221 111 112222221 1 1
Q ss_pred CCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 184 LAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 184 lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
.+..+.++++|+|+-+||..+- .++..+..+.|+.-.+.+++.+++. +.+.++.+-|-
T Consensus 60 -----~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtN 118 (144)
T d1mlda1 60 -----EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISN 118 (144)
T ss_dssp -----GGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSS
T ss_pred -----CChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecC
Confidence 1566777899999999996442 3445667899999999999999996 66777766654
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.96 E-value=0.0039 Score=55.64 Aligned_cols=113 Identities=15% Similarity=0.011 Sum_probs=70.4
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhC---C-CccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeE-E
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKS---P-NVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKV-L 173 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g---~-~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v-~ 173 (614)
..+..+|.||||+|.+|.+++-.|++.. . +.-.++++..++.....+.--.++.+. ..... .
T Consensus 21 ~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~-------------a~~~~~~ 87 (175)
T d7mdha1 21 WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS-------------LYPLLRE 87 (175)
T ss_dssp CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT-------------TCTTEEE
T ss_pred cCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc-------------ccccccC
Confidence 3445689999999999999999887642 1 112455555554321111111111111 11111 1
Q ss_pred EEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 174 PISGDAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 174 ~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
.+.++ +..+.++++|+||-+||..+ ..++..+.+..|+.-.+++.+...+.
T Consensus 88 ~~~~~-----------~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~ 139 (175)
T d7mdha1 88 VSIGI-----------DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 139 (175)
T ss_dssp EEEES-----------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-----------cchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 22221 23456689999999998764 45667788999999999999999885
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.0013 Score=56.89 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=72.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|.|+||+|.+|++++..|..+...+.++.+++..+. .+..-.++... . .......+.+ .
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~---~~g~a~Dl~h~-----------~-~~~~~~~~~~----~ 61 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV---TPGVAVDLSHI-----------P-TAVKIKGFSG----E 61 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT---HHHHHHHHHTS-----------C-SSCEEEEECS----S
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc---chhHHHHHHCC-----------c-cccCCcEEEc----C
Confidence 68999999999999999887655334567888876432 22111222111 1 2223333322 1
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
+ +++ .++++|+||-+||..+ ..++..++...|..-.+++.+...+. ..+.++
T Consensus 62 ~------~~~-~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aiv 114 (145)
T d2cmda1 62 D------ATP-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACI 114 (145)
T ss_dssp C------CHH-HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEE
T ss_pred C------Ccc-ccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEE
Confidence 1 344 4679999999999753 33455567899999999999988885 445544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.87 E-value=0.003 Score=55.86 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=51.9
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+|+|+|.|| |++|+++++.|.+.|++ |++..|+. ++.+++.+ ..........+...
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~---V~v~dr~~------~~a~~l~~--------------~~~~~~~~~~~~~~ 57 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIK---VTVACRTL------ESAKKLSA--------------GVQHSTPISLDVND 57 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCE---EEEEESCH------HHHHHHHT--------------TCTTEEEEECCTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCE---EEEEECCh------HHHHHHHh--------------cccccccccccccc
Confidence 689999986 99999999999999876 89999974 34443322 22334444445444
Q ss_pred CCCCCCHHHHHHHhccccEEEEccc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAA 206 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA 206 (614)
.. .....+...|.++.+..
T Consensus 58 ~~------~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 58 DA------ALDAEVAKHDLVISLIP 76 (182)
T ss_dssp HH------HHHHHHTTSSEEEECSC
T ss_pred hh------hhHhhhhccceeEeecc
Confidence 33 56677778888886543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.85 E-value=0.0027 Score=54.88 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=72.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEE--EEeCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVL--PISGDAE 180 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~--~v~gDl~ 180 (614)
|+|.|.||+|.+|..++..|+.++. +.++.++++.++-..++..-.++.+ ..+. ...++. ....+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~~~~~~~g~a~Dl~~---------~~~~-~~~~~~~~~~~~~-- 67 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHSINKLEGLREDIYD---------ALAG-TRSDANIYVESDE-- 67 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGGHHHHHHHHHHHHH---------HHTT-SCCCCEEEEEETT--
T ss_pred CEEEEECCCChHHHHHHHHHHhCCc-ccccccccchhhhHhhhcccccchh---------cccc-cccCCccccCCcc--
Confidence 5799999999999999999888753 4578888886432111111111111 0111 122233 22221
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEE
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFV 242 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V 242 (614)
++ +.++++|+|+-+||..+- .++..+.++.|..-.+.+.+...+. ..+.++
T Consensus 68 ---------d~-~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~-~~~~ii 119 (145)
T d1hyea1 68 ---------NL-RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-CDTKIF 119 (145)
T ss_dssp ---------CG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
T ss_pred ---------hH-HHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhcc-CCCeEE
Confidence 11 235689999999997543 4456678899999999999888885 444444
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.82 E-value=0.0034 Score=54.35 Aligned_cols=117 Identities=11% Similarity=0.114 Sum_probs=73.2
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+.++|-|.|+ |.+|..++..|+.++. +.+|+++++.+... +..-.++... .. .........+|..
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~-~~elvL~D~~~~~~--~g~a~Dl~~a---------~~--~~~~~~~~~~d~~ 68 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVKDRT--KGDALDLEDA---------QA--FTAPKKIYSGEYS 68 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHH--HHHHHHHHGG---------GG--GSCCCEEEECCGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEeecccchh--HHHHHHHhcc---------cc--ccCCceEeeccHH
Confidence 4578999995 9999999999999863 35799998764211 1111111110 11 1122345566643
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+ +.++|+|+-+|+...- .....+....|+.-.+.+.+...+. +.+.++.+-|
T Consensus 69 ~-------------~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt 121 (146)
T d1ez4a1 69 D-------------CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA 121 (146)
T ss_dssp G-------------GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred H-------------hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence 2 4689999999987542 3455567889999999999998885 6777766655
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.81 E-value=0.00067 Score=57.80 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=52.6
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|+|.|+ |.+|+.+++.|.+.|++ |.++.+.+ ++++++.+ . -++.++.||.+++
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~---v~vid~d~------~~~~~~~~--------------~-~~~~vi~Gd~~~~ 55 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHD---IVLIDIDK------DICKKASA--------------E-IDALVINGDCTKI 55 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE---EEEEESCH------HHHHHHHH--------------H-CSSEEEESCTTSH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC---cceecCCh------hhhhhhhh--------------h-hhhhhccCcccch
Confidence 68999997 99999999999999877 77777753 33333211 1 1467899999997
Q ss_pred CCCCCHHHHHHH-hccccEEEEc
Q psy6053 183 ELAIKESDRQLL-ASEVDIMIHG 204 (614)
Q Consensus 183 ~lGLs~~~~~~l-~~~vd~ViH~ 204 (614)
+ .++++ ++++|.++-+
T Consensus 56 ~------~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 56 K------TLEDAGIEDADMYIAV 72 (132)
T ss_dssp H------HHHHTTTTTCSEEEEC
T ss_pred h------hhhhcChhhhhhhccc
Confidence 6 56665 4688988854
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.77 E-value=0.0039 Score=53.64 Aligned_cols=115 Identities=12% Similarity=0.030 Sum_probs=74.8
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|-|+||+|.+|+.++..|+.++. +.++.+++.+.+...++.-..++.+ ..+ ...+..+..+|..+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~~~~~~~~g~a~Dl~~---------~~~--~~~~~~i~~~~~~~-- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDKEDDTVGQAADTNH---------GIA--YDSNTRVRQGGYED-- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGGHHHHHHHHHHHHH---------HHT--TTCCCEEEECCGGG--
T ss_pred eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecCCcccccceeecchhh---------ccc--ccCCceEeeCCHHH--
Confidence 689999999999999999998854 4678888764322111111111111 011 22344455565432
Q ss_pred CCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 184 LAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 184 lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+.++|+|+-+|+..+- .++..+.++.|..-.+.+.+..++. +.+.++-+
T Consensus 68 -----------~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~iv 117 (142)
T d1o6za1 68 -----------TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLT 117 (142)
T ss_dssp -----------GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEE
T ss_pred -----------hhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEE
Confidence 3689999999986543 3456678899999999999998885 55555433
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.59 E-value=0.012 Score=51.08 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=70.2
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCC---CccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSP---NVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~---~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
++++|.|+||+|++|++++..|..... ...-...+.-.... .+.++.... + + ... .......+.+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~---~~~~~~~~~----~-~--~~~--~~~~~~~~~~ 70 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA---MKALEGVVM----E-L--EDC--AFPLLAGLEA 70 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG---HHHHHHHHH----H-H--HTT--TCTTEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccc---hhhHcCchh----h-h--hcc--cccccccccc
Confidence 357999999999999999999987642 10011222222222 122221100 0 0 000 1122222222
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
.- +..+.++++|+|+-+||..+ ..++..+.+..|+.-.+.+.+...+......++.+
T Consensus 71 ~~----------~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~viv 128 (154)
T d1y7ta1 71 TD----------DPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLV 128 (154)
T ss_dssp ES----------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CC----------chhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 11 23456689999999999764 34556678899999999999998885232344433
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0025 Score=59.35 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=52.6
Q ss_pred cCCcEEEEecc----------------cccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhh
Q psy6053 100 FTGKTLFMTGA----------------SGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSV 163 (614)
Q Consensus 100 ~~~~~VLITGa----------------TGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~ 163 (614)
++|++||||+| ||-+|..|++.+.++|.+ |.++.-+....
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~---V~li~g~~~~~--------------------- 59 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN---VTLVSGPVSLP--------------------- 59 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE---EEEEECSCCCC---------------------
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCc---hhhhhcccccC---------------------
Confidence 56888888875 789999999999999988 66555543321
Q ss_pred ccccccCeEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChh
Q psy6053 164 HGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFD 211 (614)
Q Consensus 164 ~p~~~~~~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~ 211 (614)
....+..+...-.+.- .+.....++++|++|++||...|.
T Consensus 60 ----~p~~~~~~~~~t~~~m----~~~~~~~~~~~D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 60 ----TPPFVKRVDVMTALEM----EAAVNASVQQQNIFIGCAAVADYR 99 (223)
T ss_dssp ----CCTTEEEEECCSHHHH----HHHHHHHGGGCSEEEECCBCCSEE
T ss_pred ----cccccccceehhhHHH----HHHHHhhhccceeEeeeechhhhh
Confidence 2234555443211110 113344456899999999988773
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.14 E-value=0.0091 Score=51.99 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+.++|-|.|| |.+|+.++..|..++ +.++++++..+.....+ -.++.. ..+. ..........+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~--~~el~L~D~~~~~~~g~--a~Dl~~---------~~~~-~~~~~~~~~~~-- 68 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRE--LADVVLYDVVKGMPEGK--ALDLSH---------VTSV-VDTNVSVRAEY-- 68 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHH--HHHHHH---------HHHH-TTCCCCEEEEC--
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC--CceEEEEEeccccchhH--HHHHhh---------hccc-cCCeeEEeccC--
Confidence 3578999997 999999998888775 45788777655321111 111110 0000 00111111111
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccChh------HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRFD------EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+++..++++|+|+-+|+..+-. ....+....|+.-.+.+++.+.++ +.+.++.+-|-
T Consensus 69 ---------~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsN 131 (154)
T d1pzga1 69 ---------SYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTN 131 (154)
T ss_dssp ---------SHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCS
T ss_pred ---------chhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCC
Confidence 3556678999999999865421 133456788999999999998886 66676665543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.13 E-value=0.024 Score=48.47 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=70.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
++|-|.|| |.+|+.++..|+.++. +.+++++++.+....++ ..++.+ ..+ .........||..
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~D~~~~~~~g~--a~Dl~~---------~~~--~~~~~~~~~~~~~-- 64 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIGE--AMDINH---------GLP--FMGQMSLYAGDYS-- 64 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCHH--HHHHTT---------SCC--CTTCEEEC--CGG--
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeccCCcccee--eeeecc---------Ccc--cCCCeeEeeCcHH--
Confidence 46888897 9999999999998854 56799998876543321 112211 111 2334444444432
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIS 245 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vS 245 (614)
.++++|+|+-+|+..+ ..++..+....|+.-.+.+.+...++ +.+.++.+-
T Consensus 65 -----------~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivv 116 (142)
T d1y6ja1 65 -----------DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV 116 (142)
T ss_dssp -----------GGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred -----------HhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEe
Confidence 2478999999998654 34555677899999999999988885 555555443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.0076 Score=52.13 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=74.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.+++|-|.|| |.+|+.++..|+.++. +.+|.++++.++.. +....++.+ .... ....+.+..+|..
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l-~~el~L~Di~~~~~--~g~a~Dl~~---------~~~~-~~~~~~~~~~d~~ 70 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANESKA--IGDAMDFNH---------GKVF-APKPVDIWHGDYD 70 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHH--HHHHHHHHH---------HTTS-SSSCCEEEECCGG
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEeeccccc--cchhccHhh---------Cccc-cCCCeEEEECCHH
Confidence 4678999997 9999999999999864 46788888754221 111111111 1111 2234555556543
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
+ ++++|+|+.+|+..+ ..+...+....|+.-.+.+.+...+. ..+.++.+
T Consensus 71 ~-------------l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~iv 121 (148)
T d1ldna1 71 D-------------CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLV 121 (148)
T ss_dssp G-------------TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred H-------------hccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEE
Confidence 2 468999999998754 23444566788999889998888875 45554444
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0015 Score=56.57 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=31.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhC-CCccEEEEEEccCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKS-PNVKKIYILMRQKKG 141 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g-~~v~~V~~LvR~~~~ 141 (614)
+|+|-|.||||++|+.+++.|++.. +.+.+++++.+++..
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~ 41 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG 41 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc
Confidence 3689999999999999999998752 356778888776543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.08 E-value=0.0084 Score=52.21 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=64.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCC----CccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSP----NVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS 176 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~----~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~ 176 (614)
++++|.|+||+|.+|++++-.|+..+. ....++.+...+. ++..+.+-. ..... .......+.
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~----~~~~~~l~~-------~~~~~--~~~~~~~~~ 68 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM----MGVLDGVLM-------ELQDC--ALPLLKDVI 68 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG----HHHHHHHHH-------HHHHT--CCTTEEEEE
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc----hhhhhhhhh-------hhccc--ccccccccc
Confidence 357999999999999999998876431 2223444433322 122221100 00000 111122111
Q ss_pred CCCCCCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHc
Q psy6053 177 GDAEADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEM 235 (614)
Q Consensus 177 gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~ 235 (614)
+ +. +..+.++++|+||-+|+..+- .++..+.++.|..-.+.+.+...+.
T Consensus 69 ~--~~--------~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~ 118 (154)
T d5mdha1 69 A--TD--------KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118 (154)
T ss_dssp E--ES--------CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred c--Cc--------ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhh
Confidence 1 11 234567899999999987542 3445567788999889988877664
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.03 E-value=0.022 Score=49.66 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=76.1
Q ss_pred cccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeC
Q psy6053 98 ETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISG 177 (614)
Q Consensus 98 ~~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~g 177 (614)
.....++|-|.|+ |.+|+.++..|+.+|. +.++.+.++.++. ++..-.++.....| .......-.+
T Consensus 16 ~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l-~~ElvLiD~~~~~--a~g~alDl~h~~~~----------~~~~~~~~~~ 81 (160)
T d1i0za1 16 ATVPNNKITVVGV-GQVGMACAISILGKSL-ADELALVDVLEDK--LKGEMMDLQHGSLF----------LQTPKIVADK 81 (160)
T ss_dssp CCCCSSEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSCHHH--HHHHHHHHHHTGGG----------CCCSEEEECS
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEeccch--hHHHHHHHhccccc----------cCCCeEEecc
Confidence 3445679999996 9999999999999865 4678888775322 11112222211111 1223334445
Q ss_pred CCCCCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 178 DAEADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 178 Dl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
|..+ ++++|+|+.+|+..+- .++..+....|+.-.+.++...++. +.+.++.+
T Consensus 82 d~~~-------------~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiiv 135 (160)
T d1i0za1 82 DYSV-------------TANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIV 135 (160)
T ss_dssp SGGG-------------GTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred chhh-------------cccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEE
Confidence 5433 4689999999997643 2444567788999999999888885 55554433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.94 E-value=0.008 Score=50.69 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=51.2
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|++.|.|+ |-+|+.+++.|.+.|++ |+++...+ ++++++ ......++.||.+++
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~---vvvid~d~------~~~~~~----------------~~~~~~~~~gd~~~~ 54 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHE---VLAVDINE------EKVNAY----------------ASYATHAVIANATEE 54 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCC---CEEEESCH------HHHHHT----------------TTTCSEEEECCTTCT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCe---EEEecCcH------HHHHHH----------------HHhCCcceeeecccc
Confidence 46788875 99999999999999988 66666642 444433 113346788999998
Q ss_pred CCCCCHHHHHHH-hccccEEEEcc
Q psy6053 183 ELAIKESDRQLL-ASEVDIMIHGA 205 (614)
Q Consensus 183 ~lGLs~~~~~~l-~~~vd~ViH~A 205 (614)
+ .+.++ ++++|.||=+.
T Consensus 55 ~------~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 55 N------ELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp T------HHHHHTGGGCSEEEECC
T ss_pred h------hhhccCCccccEEEEEc
Confidence 7 56665 67899887543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.88 E-value=0.014 Score=50.27 Aligned_cols=116 Identities=9% Similarity=0.103 Sum_probs=71.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|-|.|+ |.+|..++..|+.+|- +.++++.++.+... +..-.++. +..+. .........+|..+
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~~~--~g~~~Dl~---------~a~~~-~~~~~~~~~~d~~~- 66 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGV-ADDYVFIDANEAKV--KADQIDFQ---------DAMAN-LEAHGNIVINDWAA- 66 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHH--HHHHHHHH---------HHGGG-SSSCCEEEESCGGG-
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEecccchh--hhHHHhhh---------ccccc-cCCccceeccCHHH-
Confidence 68999995 9999999999998863 45688777653211 11111111 11111 22334445565432
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-----hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-----DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
++++|+|+-+||..+. .....+..+.|+.-.+.+.+..++. +.+.++.+-|
T Consensus 67 ------------l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt 122 (146)
T d1hyha1 67 ------------LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVIS 122 (146)
T ss_dssp ------------GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred ------------hccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEec
Confidence 4789999999997542 1222345788999999999988885 5666655544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.01 Score=53.17 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=57.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++|+|.|+ |..|+.++..|.+.| +++|++..|.+... +|+.++.+ ++... ........|+
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g--~~~i~i~nR~~~~~---~~~~~l~~-----~~~~~------~~~~~~~~~~ 78 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEG--LKEIKLFNRRDEFF---DKALAFAQ-----RVNEN------TDCVVTVTDL 78 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSSTTH---HHHHHHHH-----HHHHH------SSCEEEEEET
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcC--CceEeeeccchHHH---HHHHHHHH-----HHHhh------cCcceEeeec
Confidence 46799999996 778999999999987 45899999986542 33333221 11111 1123445666
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAAT 207 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~ 207 (614)
.+.. ++.....++|+||++...
T Consensus 79 ~~~~------~~~~~~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 79 ADQQ------AFAEALASADILTNGTKV 100 (182)
T ss_dssp TCHH------HHHHHHHTCSEEEECSST
T ss_pred cccc------chhhhhcccceeccccCC
Confidence 6543 677777899999999653
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.55 E-value=0.045 Score=46.52 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=74.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEAD 182 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~ 182 (614)
|+|-|.|| |.+|+.++..|+.++. +.++.++++.+.. ++..-.++.+ ..+ ...+.....+|..+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~Di~~~~--~~g~~~Dl~~---------~~~--~~~~~~~~~~~~~~- 64 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDKKR--AEGDALDLIH---------GTP--FTRRANIYAGDYAD- 64 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHH--HHHHHHHHHH---------HGG--GSCCCEEEECCGGG-
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEeccccc--ccchhccccc---------ccc--ccccccccCCcHHH-
Confidence 57899996 9999999999988864 5678888876421 1111111111 111 22344455555322
Q ss_pred CCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 183 ELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 183 ~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
++++|+|+-+|+..+- .....+....|+.=.+.+.+...+. ..+.++.+-|
T Consensus 65 ------------~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvt 116 (140)
T d1a5za1 65 ------------LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVT 116 (140)
T ss_dssp ------------GTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred ------------hcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeC
Confidence 4789999999987543 3445667788998889999888885 5566666544
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=95.55 E-value=0.0097 Score=53.15 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=28.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+++|.|.||||++|..|++-|... |++.-.++..+++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l~~~s~ 37 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-PHMTITALTVSAQ 37 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEETT
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-CCCceEeeEeecc
Confidence 468999999999999999977765 7864444445543
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.50 E-value=0.1 Score=44.15 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=72.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE-eCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI-SGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v-~gDl~~ 181 (614)
|+|.|+|| |.+|..++..|+.++. +.++.++++.+.....+. .++.+...+ ...+..+. .+|..
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l-~~el~L~Di~~~~~~~~~--~d~~~~~~~----------~~~~~~i~~~~~~~- 65 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGIPQGKA--LDMYESGPV----------GLFDTKVTGSNDYA- 65 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSHHHHHH--HHHHTTHHH----------HTCCCEEEEESCGG-
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-CceEEEeccccccchhhh--hhhhcccch----------hcccceEEecCCHH-
Confidence 57999996 9999999999988854 467888887764322111 122111110 11223332 23321
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEE
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHI 244 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~v 244 (614)
.++++|+|+-+||..+ ..+...+....|..-.+.+.+...+. ..+.++.+
T Consensus 66 ------------~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aiviv 116 (142)
T d1guza1 66 ------------DTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIV 116 (142)
T ss_dssp ------------GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred ------------HhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEE
Confidence 2478999999998643 33445667888999999999888875 55565554
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.44 E-value=0.0093 Score=53.09 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=30.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN 143 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~ 143 (614)
+++|.|.||||++|..|++-|.+. |++.-+++..|+..++.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~~aG~~ 41 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGKK 41 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTSB
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccccCCCc
Confidence 368999999999999999977654 88755555555555543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.42 E-value=0.0038 Score=53.86 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=28.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.++|.|.||||++|..|++-|.+..+...++..+..+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~ 38 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA 38 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 4789999999999999999887554444567766544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.38 E-value=0.05 Score=46.41 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=73.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE-eCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI-SGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v-~gDl~~ 181 (614)
.+|-|.|+ |.+|++++..|+.++. +.++.++++.+.. ++....++.... + ......+. .+|.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l-~~ElvL~D~~~~~--~~g~a~Dl~~a~---------~--~~~~~~i~~~~~~-- 64 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAKER--VEAEVLDMQHGS---------S--FYPTVSIDGSDDP-- 64 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSHHH--HHHHHHHHHHTG---------G--GSTTCEEEEESCG--
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEecccc--chhHHHHHHhcc---------c--cCCCceeecCCCH--
Confidence 57899996 9999999999998864 4678888876422 111111221111 1 11122232 3332
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
+ .++++|+|+-+|+..+ ..+...+....|+.-.+.+.+..++. +.+.++.+-|
T Consensus 65 ----------~-~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvt 118 (143)
T d1llda1 65 ----------E-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLIT 118 (143)
T ss_dssp ----------G-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred ----------H-HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence 2 2468999999999765 34555678899999999999888885 5555554433
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.13 E-value=0.0054 Score=54.66 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=30.7
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
|+|.|+||+|.+|+.|.+.|++.|++ |.+..|.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~---V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHE---IVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 67999999999999999999999988 78888864
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=94.92 E-value=0.0092 Score=51.42 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=28.6
Q ss_pred cEEEEecccccccHHHHHHHHhh-CCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRK-SPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~-g~~v~~V~~LvR~~ 139 (614)
|+|.|.||||++|..|++.|++. .+.+..++.+..++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~ 38 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ 38 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccc
Confidence 57999999999999999999863 24456677665543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.013 Score=44.55 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
++++|||+||+|-+|...+.-+...|.+ |++..++++.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~---Vi~~t~s~~k 68 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQ---VVAVSGREST 68 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCC---EEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCe---EEEEECCHHH
Confidence 4678999999999999999987777766 8888887643
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=94.79 E-value=0.13 Score=43.51 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=68.1
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE-eCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI-SGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v-~gDl~~ 181 (614)
++|-|.|+ |.+|..++..|+.++ +..+.+++..+..... + -.++.....+ ......+. .+|..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~--l~dl~l~D~~~~~~~~-~-~~Dl~~~~~~----------~~~~~~i~~~~d~~~ 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKE--LGDIVLLDIVEGVPQG-K-ALDLYEASPI----------EGFDVRVTGTNNYAD 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECSSSSHHHH-H-HHHHHTTHHH----------HTCCCCEEEESCGGG
T ss_pred CeEEEECC-CHHHHHHHHHHHhCC--cceEEEEeeccccchh-H-HHHhhccccc----------cCCCCEEEecCcHHH
Confidence 57899996 999999999888875 4568888775532111 1 1122111111 11122222 344332
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
++++|+|+-+|+... ...+..+....|+.-.+++++...+. +.+.++.+-|
T Consensus 67 -------------~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvt 118 (142)
T d1uxja1 67 -------------TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN 118 (142)
T ss_dssp -------------GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECS
T ss_pred -------------hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeC
Confidence 468999999999754 34555667889999999999888884 5566665533
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.77 E-value=0.013 Score=52.46 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=30.6
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKN 143 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~ 143 (614)
+..+|.|.||||+.|..|++-|.+. |.+.-+++..++..++.
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S~~~aG~~ 45 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTADRKAGEQ 45 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEECSTTTTSC
T ss_pred CccEEEEECcccHHHHHHHHHHHhC-CCceEEEEeccccCCCc
Confidence 3568999999999999999988775 87654444445444443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.67 E-value=0.027 Score=49.99 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=32.0
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
+|.+|||+||+|-+|...++-....|.. |++.+++++.
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~---Viat~~s~~k 68 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYT---VEASTGKAAE 68 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCC---EEEEESCTTC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCc---eEEecCchHH
Confidence 3678999999999999999887777766 8888887655
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.022 Score=50.23 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
.|.+|||+||+|-+|...++-+...|.+ |++++++
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~---vi~~~~~ 62 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLK---ILGTAGT 62 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred CCCEEEEEeccccccccccccccccCcc---ccccccc
Confidence 5789999999999999998877777654 8888875
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.52 E-value=0.056 Score=46.03 Aligned_cols=117 Identities=17% Similarity=0.044 Sum_probs=72.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEE-eCCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPI-SGDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v-~gDl~~ 181 (614)
|+|-|.|| |.+|+.++..|+.++ -+.++.++++.+... +..-.++ .+..+. ......+. .+|..
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~~--~g~alDl---------~~~~~~-~~~~~~i~~~~d~~- 65 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLA--VGEAMDL---------AHAAAG-IDKYPKIVGGADYS- 65 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHH--HHHHHHH---------HHHHHT-TTCCCEEEEESCGG-
T ss_pred CEEEEECc-CHHHHHHHHHHHhcC-cCceEEEEecccchh--hHHHHHH---------hhhccc-cCCCCccccCCCHH-
Confidence 68899996 999999999998885 456788887653221 1111111 111110 11122222 33432
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccC-hhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIR-FDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
.++++|+|+-.|+..+ ...+..+....|..-.+.+.+..++. +.+.++.+-|-
T Consensus 66 ------------~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtN 119 (142)
T d1ojua1 66 ------------LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTN 119 (142)
T ss_dssp ------------GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSS
T ss_pred ------------HhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecC
Confidence 3578999999998643 33455677788999999999988885 55666655543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=93.80 E-value=0.053 Score=47.11 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=51.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.++++|||.|+ |-+|+.+++.|...|. ++|++..|.. +|.+++.+ +.+ ..++ ++
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~--~~i~v~nRt~------~ka~~l~~---------~~~------~~~~--~~ 75 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTY------ERAVELAR---------DLG------GEAV--RF 75 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSH------HHHHHHHH---------HHT------CEEC--CG
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCC--cEEEEEcCcH------HHHHHHHH---------hhh------cccc--cc
Confidence 56799999997 9999999999999875 4688888873 22222211 111 1111 11
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccC
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIR 209 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~ 209 (614)
+++...+.++|+||.|.+...
T Consensus 76 ---------~~~~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 76 ---------DELVDHLARSDVVVSATAAPH 96 (159)
T ss_dssp ---------GGHHHHHHTCSEEEECCSSSS
T ss_pred ---------hhHHHHhccCCEEEEecCCCC
Confidence 257778889999999987644
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.048 Score=42.68 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=30.9
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
++||+|+|.|. |--|..+++.|.++|.+ |++.+...+
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~~---v~~~D~~~~ 39 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARGVT---PRVMDTRMT 39 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCC---CEEEESSSS
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCCCE---EEEeeCCcC
Confidence 68999999997 66899999999999987 677776544
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.064 Score=47.14 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=50.8
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
.|.+|+|+||+|-+|...++-....|.+ |++.+++... .+.++++ -.+ .++ |.+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~---Vi~~~~s~~k---~~~~~~l----------------Ga~--~vi--~~~ 81 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAK---LIGTVGTAQK---AQSALKA----------------GAW--QVI--NYR 81 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCE---EEEEESSHHH---HHHHHHH----------------TCS--EEE--ETT
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCe---EeecccchHH---HHHHHhc----------------CCe--EEE--ECC
Confidence 4789999999999999999888887754 8888887422 1222221 112 222 555
Q ss_pred CCCCCCCHHHHHHHhc--cccEEEEccccc
Q psy6053 181 ADELAIKESDRQLLAS--EVDIMIHGAATI 208 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~--~vd~ViH~AA~v 208 (614)
++++ .+.+.++.+ ++|+|+.+++.-
T Consensus 82 ~~d~---~~~v~~~t~g~g~d~v~d~~g~~ 108 (179)
T d1qora2 82 EEDL---VERLKEITGGKKVRVVYDSVGRD 108 (179)
T ss_dssp TSCH---HHHHHHHTTTCCEEEEEECSCGG
T ss_pred CCCH---HHHHHHHhCCCCeEEEEeCccHH
Confidence 5542 234444443 589999998753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.51 E-value=0.037 Score=48.93 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+|.+|||+||+|-+|...+.-+...|.. |++.++++
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~---vi~~~~~~ 60 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGAR---IYTTAGSD 60 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCE---EEEEESSH
T ss_pred CCCEEEEECCCCCcccccchhhcccccc---ceeeeccc
Confidence 4789999999999999999988888754 78888753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.44 E-value=0.031 Score=49.24 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=30.8
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
-.|++|||+||+|-+|...+.-+...|. +|++.++++.
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~---~vi~~~~~~~ 63 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPE 63 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred CCCCEEEEEeccccchhhhhhhhccccc---cccccccccc
Confidence 3578999999999999999887777764 4888887643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.21 E-value=0.12 Score=45.68 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-+|.+|||+||+|-+|...++-....|. +|++.+|++
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga---~vi~~~~~~ 64 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGSD 64 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCC---EEEEeCCCH
Confidence 4589999999999999999987777764 489998864
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.92 E-value=0.068 Score=46.38 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=70.7
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAE 180 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~ 180 (614)
+..+|-|.|+ |.+|..++..|+.++. +.+++++++.+.. +.....++.+. .+. .........+|..
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l-~~elvL~D~~~~~--a~g~alDl~~~---------~~~-~~~~~~~~~~d~~ 83 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGL-ADELALVDADTDK--LRGEALDLQHG---------SLF-LSTPKIVFGKDYN 83 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTS-CSEEEEECSCHHH--HHHHHHHHHHT---------TTT-CSCCEEEEESSGG
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCchh--hhccHHHHhCc---------chh-cCCCeEEeccchh
Confidence 3457999996 9999999999998864 4678888765321 11111222211 111 2223334444533
Q ss_pred CCCCCCCHHHHHHHhccccEEEEcccccCh-hHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEE
Q psy6053 181 ADELAIKESDRQLLASEVDIMIHGAATIRF-DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVH 243 (614)
Q Consensus 181 ~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~ 243 (614)
+ +.++|+|+-+|+..+- .++..+.++.|+.-.+.+....++. +.+.++.
T Consensus 84 ~-------------~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivi 133 (159)
T d2ldxa1 84 V-------------SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKII 133 (159)
T ss_dssp G-------------GTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEE
T ss_pred h-------------hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEE
Confidence 2 3689999999987543 2333456788888888888777764 4455443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=92.76 E-value=0.1 Score=44.52 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=31.5
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++|.|.||+|.+|..+++.|.+.|++ |.+.+|.+
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~---V~~~d~~~ 43 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYP---ISILDRED 43 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCC---EEEECTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCC---cEeccccc
Confidence 478999999999999999999999998 77877765
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.74 E-value=0.09 Score=44.97 Aligned_cols=74 Identities=11% Similarity=0.192 Sum_probs=52.2
Q ss_pred EEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCCCC
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADE 183 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~~~ 183 (614)
+|+|.|. |-+|..+++.|.+.|.+ |+++...+. ...+++++. ...++.++.||.++++
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~---v~vId~d~~--~~~~~~~~~----------------~~~~~~vi~Gd~~d~~ 62 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQN---VTVISNLPE--DDIKQLEQR----------------LGDNADVIPGDSNDSS 62 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCC---EEEEECCCH--HHHHHHHHH----------------HCTTCEEEESCTTSHH
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCC---EEEEeccch--hHHHHHHHh----------------hcCCcEEEEccCcchH
Confidence 5889986 88999999999999877 666665432 122333332 2357889999999976
Q ss_pred CCCCHHHHHHH-hccccEEEEcc
Q psy6053 184 LAIKESDRQLL-ASEVDIMIHGA 205 (614)
Q Consensus 184 lGLs~~~~~~l-~~~vd~ViH~A 205 (614)
.++++ +++++.|+=+.
T Consensus 63 ------~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 63 ------VLKKAGIDRCRAILALS 79 (153)
T ss_dssp ------HHHHHTTTTCSEEEECS
T ss_pred ------HHHHhccccCCEEEEcc
Confidence 55554 45788888554
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=92.38 E-value=0.15 Score=43.62 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=30.7
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
+|+|.|.|+||-||+..++-+-+. ++--+|+++.-.++
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~lsa~~N 39 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERN-LDRYQVIALTANRN 39 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT-GGGEEEEEEEESSC
T ss_pred CcEEEEECCCcHHHHHHHHHHHcC-CCCcEEEEEEeCCC
Confidence 689999999999999998866554 66567888877654
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.33 E-value=0.42 Score=40.64 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=69.8
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEe-CCCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPIS-GDAEA 181 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~-gDl~~ 181 (614)
.+|-|.|+ |.+|+.++..|+.++ +.++.++++.+... +..-.++.....+ ...+..+.. +|..
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~--l~el~L~Di~~~~~--~g~a~Dl~~~~~~----------~~~~~~v~~~~~~~- 67 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKN--LGDVVLFDIVKNMP--HGKALDTSHTNVM----------AYSNCKVSGSNTYD- 67 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECSSSSHH--HHHHHHHHTHHHH----------HTCCCCEEEECCGG-
T ss_pred CeEEEECC-CHHHHHHHHHHHhCC--CCeEEEEeccCCcc--eeeecchhhhccc----------cCCCcEEEeccccc-
Confidence 57999995 999999998676664 56888888755321 1111111111000 112222322 2222
Q ss_pred CCCCCCHHHHHHHhccccEEEEcccccChh------HHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 182 DELAIKESDRQLLASEVDIMIHGAATIRFD------EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~------~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
.++++|+|+-+|+..+.. ....+....|+.-.+.+.+..++. ..+.++.+-|
T Consensus 68 ------------~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvt 125 (150)
T d1t2da1 68 ------------DLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 125 (150)
T ss_dssp ------------GGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred ------------ccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 246899999999965421 123456788999999999988885 5666665543
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=92.30 E-value=0.024 Score=42.84 Aligned_cols=34 Identities=6% Similarity=0.266 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHhhcCCCCccccccCCCCchhh
Q psy6053 55 CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEE 88 (614)
Q Consensus 55 ~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~ 88 (614)
+|+++++++..+++.+|++++..++|++||+++-
T Consensus 37 dSl~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~L 70 (76)
T d2gdwa1 37 HSLKAMAVAAQVHREYQVELPLKVLFAQPTIKAL 70 (76)
T ss_dssp TTHHHHHHHHHHHHTTSSCCTTHHHHHSCSHHHH
T ss_pred ChHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999763
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.73 E-value=0.27 Score=40.80 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=60.2
Q ss_pred cccCCcEEEEeccc---ccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEE
Q psy6053 98 ETFTGKTLFMTGAS---GFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLP 174 (614)
Q Consensus 98 ~~~~~~~VLITGaT---GFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~ 174 (614)
.+++.++|.|.||| |-.|..+++.|.+.| . .+||.+....+. ..++..
T Consensus 4 ~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~-g~v~pVnP~~~~---------------------------i~G~~~ 54 (129)
T d2csua1 4 YFFNPKGIAVIGASNDPKKLGYEVFKNLKEYK-K-GKVYPVNIKEEE---------------------------VQGVKA 54 (129)
T ss_dssp TTTSCSEEEEETCCSCTTSHHHHHHHHHTTCC-S-SEEEEECSSCSE---------------------------ETTEEC
T ss_pred HhCCCCeEEEEccCCCCCCcHHHHHHHHHHcC-C-CcEEEeccCccc---------------------------cCCeEe
Confidence 46889999999999 899999999987654 2 468876543211 011111
Q ss_pred EeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCcee
Q psy6053 175 ISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYC 249 (614)
Q Consensus 175 v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~~~ 249 (614)
.-++++ +-+.+|.++=+... ..+..+++.|.+. +++.++.+|+.+.
T Consensus 55 -y~sl~d------------lp~~vDlvvi~vp~---------------~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 55 -YKSVKD------------IPDEIDLAIIVVPK---------------RFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp -BSSTTS------------CSSCCSEEEECSCH---------------HHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred -ecchhh------------cCCCCceEEEecCh---------------HHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 123333 33468888865432 1134567777774 8898888888764
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=91.01 E-value=0.093 Score=40.36 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=34.4
Q ss_pred chhhhh-hhhHHHHHHHHHHhhcCCCCccccccCCCCchhh
Q psy6053 49 PLEFIR-CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEE 88 (614)
Q Consensus 49 ~~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~ 88 (614)
|+.... +|+.++++...+++.+|+++|...++++||+++-
T Consensus 34 ~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l 74 (86)
T d2af8a_ 34 RFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPREL 74 (86)
T ss_dssp SHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHH
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHH
Confidence 444333 8889999999999999999999999999999763
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=90.73 E-value=0.88 Score=36.26 Aligned_cols=95 Identities=7% Similarity=0.083 Sum_probs=60.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
.+||+|+|.| +|-+|..-++.|++.|.+ |++...... +.+.++. ...+++++..+.
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~ga~---v~v~~~~~~-----~~~~~~~---------------~~~~i~~~~~~~ 65 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEAGAR---LTVNALTFI-----PQFTVWA---------------NEGMLTLVEGPF 65 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTTBE---EEEEESSCC-----HHHHHHH---------------TTTSCEEEESSC
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHCCCe---EEEEeccCC-----hHHHHHH---------------hcCCceeeccCC
Confidence 5789999999 588999999999999866 555554332 1222221 225678888777
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeC
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST 246 (614)
...+ +++++.|+-+.... .. ...+.+.|++. + .+|.+..
T Consensus 66 ~~~d-----------l~~~~lv~~at~d~----~~----------n~~i~~~a~~~-~--ilVNv~D 104 (113)
T d1pjqa1 66 DETL-----------LDSCWLAIAATDDD----TV----------NQRVSDAAESR-R--IFCNVVD 104 (113)
T ss_dssp CGGG-----------GTTCSEEEECCSCH----HH----------HHHHHHHHHHT-T--CEEEETT
T ss_pred CHHH-----------hCCCcEEeecCCCH----HH----------HHHHHHHHHHc-C--CEEEeCC
Confidence 6543 36788888553321 11 13577788874 3 4566554
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=90.64 E-value=0.62 Score=39.57 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=30.4
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
+|+|.|.|+||-||+..++-+.+. ++--+|++|.-.++
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~Lsa~~N 38 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHN-PEHFRVVALVAGKN 38 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTTEEEEEEEESSC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhC-CCCcEEEEEEecCc
Confidence 478999999999999999876554 66567998886554
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=90.37 E-value=0.081 Score=45.56 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=31.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
|+|.|.|+ |-+|..+...|.+.|++ |.++.|.+..
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~---V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHE---VQGWLRVPQP 35 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE---EEEECSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCc---eEEEEcCHHH
Confidence 78999997 99999999999999987 8899997653
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=90.32 E-value=0.071 Score=40.71 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=34.8
Q ss_pred Cchhhhh-hhhHHHHHHHHHHhhcCCCCccccccCCCCchhhh
Q psy6053 48 LPLEFIR-CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEEY 89 (614)
Q Consensus 48 ~~~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~~ 89 (614)
.|+..+. +|+.+++++..|++.+|+.+|...++++||+++-.
T Consensus 30 ~~f~dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~ 72 (82)
T d1or5a_ 30 TPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELL 72 (82)
T ss_dssp SCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHH
T ss_pred cCHHHcCCChHhHHHHHHHHHHHHhCcCCHHHHHcCCCHHHHH
Confidence 3443333 78899999999999999999999999999998644
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.24 E-value=0.049 Score=47.06 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=25.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEc
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR 137 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR 137 (614)
=+|.|.||||++|..|++-|.+....+.++..+.-
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s 36 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 36 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc
Confidence 37999999999999999866554224556666653
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.69 E-value=0.39 Score=42.90 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=49.9
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhC--hhhH-----HhhhhccccccCeEEEE
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFAS--PLFN-----LLKSVHGQKIIDKVLPI 175 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~--~~f~-----~l~~~~p~~~~~~v~~v 175 (614)
|+|.|.| .|++|..++..|.+.|++ |++.+..+ ++++++-+. ++++ .+.... ...+...
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~---V~g~D~n~------~~i~~ln~g~~p~~e~~~~~~l~~~~---~~~~~~~- 66 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHE---VIGVDVSS------TKIDLINQGKSPIVEPGLEALLQQGR---QTGRLSG- 66 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCE---EEEECSCH------HHHHHHHTTCCSSCCTTHHHHHHHHH---HTTCEEE-
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCc---EEEEeCCH------HHHHHhcccCCcccchhhhhhhhhhh---ccccccc-
Confidence 6788996 899999999999999987 88887652 455544321 1111 111000 0011111
Q ss_pred eCCCCCCCCCCCHHHHHHHhccccEEEEccccc
Q psy6053 176 SGDAEADELAIKESDRQLLASEVDIMIHGAATI 208 (614)
Q Consensus 176 ~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v 208 (614)
.. +..+.++++|+||-|..+.
T Consensus 67 ------~~------~~~~~i~~~d~i~i~VpTP 87 (202)
T d1mv8a2 67 ------TT------DFKKAVLDSDVSFICVGTP 87 (202)
T ss_dssp ------ES------CHHHHHHTCSEEEECCCCC
T ss_pred ------CC------CHHHHHhhCCEEEEecCcc
Confidence 11 4667778999999998874
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.40 E-value=0.14 Score=44.72 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=31.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
+.+|||+||+|-+|...++-....|.. |++.+|++..
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~---Viat~~s~~k 60 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYD---VVASTGNREA 60 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCC---EEEEESSSST
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCc---eEEEecCHHH
Confidence 567999999999999999877777765 8899997654
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.054 Score=47.22 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=29.3
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
..+|.|.|++|-+|+.+++.+++. .++.-+.++.|...
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~~ 41 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGS 41 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecccc
Confidence 468999999999999999999887 45444556666543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.13 E-value=1.1 Score=38.85 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=29.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
-.|.+|+|+|| |-+|...+.-+...|. ++|++..+++
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga--~~Vi~~~~~~ 63 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGA--ENVIVIAGSP 63 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTB--SEEEEEESCH
T ss_pred CCCCEEEEECC-Cccchhheeccccccc--cccccccccc
Confidence 45789999996 8899988888877775 3688888863
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=88.04 E-value=0.35 Score=42.06 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=29.5
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.++++|+|.|+ |-.|+.++..|.+.+ .+|+++.|+.
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~~---~~i~I~nR~~ 51 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQAQ---QNIVLANRTF 51 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcccC---ceeeeccchH
Confidence 46899999985 668999999998753 4699999984
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.03 E-value=0.66 Score=40.05 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=30.0
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.|+|-|.|| |-+|..++..|.++|++ |.+..|.+
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~---V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQS---VLAWDIDA 34 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 378999996 99999999999999987 88888863
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.70 E-value=0.2 Score=46.36 Aligned_cols=120 Identities=12% Similarity=0.129 Sum_probs=68.1
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHH-----HHH---HhChhhHHhhhhccccccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRI-----EEL---FASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl-----~~~---~~~~~f~~l~~~~p~~~~~ 170 (614)
-.++++|+|.| .|-+|++++..|.+.| |+++++++...=..+-..|- +++ .-...-+++++..|+ -
T Consensus 27 kL~~~~VliiG-~GglGs~va~~La~~G--vg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~---~ 100 (247)
T d1jw9b_ 27 ALKDSRVLIVG-LGGLGCAASQYLASAG--VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH---I 100 (247)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHHHT--CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT---S
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcC--CCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcc---c
Confidence 35678999999 5669999999999998 66898877443221111110 000 000011233443444 4
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEcccccChhHHHHHHHHHhHHHHHHHHHHHHHcCCCceEEEEeCc
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA 247 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~la~~~~~~k~~V~vST~ 247 (614)
+++.+...+.. +.......+.|+|+-+.... .. ...+-++|.+. + +++|+.+..
T Consensus 101 ~i~~~~~~~~~-------~~~~~~~~~~divid~~d~~--~~------------~~~in~~~~~~-~-ip~i~g~~~ 154 (247)
T d1jw9b_ 101 AITPVNALLDD-------AELAALIAEHDLVLDCTDNV--AV------------RNQLNAGCFAA-K-VPLVSGAAI 154 (247)
T ss_dssp EEEEECSCCCH-------HHHHHHHHTSSEEEECCSSH--HH------------HHHHHHHHHHH-T-CCEEEEEEE
T ss_pred chhhhhhhhhh-------ccccccccccceeeeccchh--hh------------hhhHHHHHHHh-C-CCccccccc
Confidence 56665544443 35666778899999875331 11 12344567664 3 467776554
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=87.67 E-value=0.79 Score=39.51 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=26.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
+..+|.|.| +|.+|+..++.|.+. +++.-|-+..|++
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~-~~~elvav~~~~~ 38 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQ-PDMDLVGIFSRRA 38 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTC-SSEEEEEEEESSS
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhC-CCcEEEEEEeccc
Confidence 456799998 699999999888764 6765454555554
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.47 E-value=0.55 Score=41.24 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=26.6
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
+.+|||+||+|-+|...++-....|.. +|+..+++
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~--~vi~~~~~ 65 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCS--RVVGICGT 65 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCS--EEEEEESS
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCc--ceecccch
Confidence 378999999999999999877666654 45555543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=87.30 E-value=0.3 Score=42.44 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=30.4
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.+||+|+|.|| |..++.++..|.+.|. +|++..|+.
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~---~i~I~nRt~ 51 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDC---AVTITNRTV 51 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccce---EEEeccchH
Confidence 46899999996 6689999999999874 499999975
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=86.59 E-value=0.32 Score=36.88 Aligned_cols=44 Identities=16% Similarity=0.065 Sum_probs=36.0
Q ss_pred cCCCchhhhh-hhhHHHHHHHHHHhhcCCCCccccccCCCCchhh
Q psy6053 45 DFSLPLEFIR-CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEE 88 (614)
Q Consensus 45 ~~~~~~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~~ 88 (614)
+...++..+. +|+.+.+++..+++.+|+++|...+++.+|+.+-
T Consensus 29 ~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~i~~~~~~~~~Tv~~l 73 (85)
T d1vkua_ 29 DEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDL 73 (85)
T ss_dssp CTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHH
T ss_pred CCCCCHHHhcCcchHHHHHHHHHHHHccCCCCHHHHHHcCCHHHH
Confidence 3333443333 9999999999999999999999999999999763
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.41 E-value=0.26 Score=36.78 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=33.1
Q ss_pred cCCCchhhhh-hhhHHHHHHHHHHhhcCCCCccccccCCCCchh
Q psy6053 45 DFSLPLEFIR-CEVIVSELVMAANKVNNMNVPYETFYKPPVLSE 87 (614)
Q Consensus 45 ~~~~~~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~ 87 (614)
+..-++..+. +|+.+++|...+++.+|+++|..++++ +|+..
T Consensus 26 ~~~~~f~~lG~DSl~a~el~~~i~~~~g~~l~~~~l~~-~Ti~~ 68 (76)
T d2pnga1 26 NLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVRQ-LTLRK 68 (76)
T ss_dssp CSSSCHHHHTCSSHHHHHHHHHHHHHTCCCCCHHHHTT-CCSHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhCCCCCHHHHHH-hhHHH
Confidence 4444554434 888999999999999999999999874 88754
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.23 E-value=0.027 Score=50.74 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=34.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC-cCHHHHHHHH
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG-KNARQRIEEL 151 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~-~~~~~Rl~~~ 151 (614)
++|.|.|| |.+|+.++..+++.|++ |.+.++++.. ..+.+|+++.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~---V~l~D~~~~~l~~a~~~i~~~ 50 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHT---VVLVDQTEDILAKSKKGIEES 50 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCc---EEEEECChHHHHHHHhhHHHH
Confidence 68999996 99999999999999987 8888887533 2234455443
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=86.09 E-value=0.23 Score=38.77 Aligned_cols=39 Identities=5% Similarity=0.015 Sum_probs=33.8
Q ss_pred chhhhh-hhhHHHHHHHHHHhhcCCCCccccccCCCCchh
Q psy6053 49 PLEFIR-CEVIVSELVMAANKVNNMNVPYETFYKPPVLSE 87 (614)
Q Consensus 49 ~~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~tl~~ 87 (614)
++.... +|+.+++|...|++.+|+++|...++++||+++
T Consensus 33 ~f~dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Ti~~ 72 (95)
T d1nq4a_ 33 AFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRA 72 (95)
T ss_dssp CHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHH
Confidence 443333 899999999999999999999999999999975
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.39 E-value=0.66 Score=37.16 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=48.8
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEA 181 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl~~ 181 (614)
+.+|.|.| .|-||+-++....+.|.+ +++++..++.... .---..+.||..+
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG~~---v~v~d~~~~~PA~------------------------~va~~~i~~~~~d 62 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLGVE---VIAVDRYADAPAM------------------------HVAHRSHVINMLD 62 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTTCE---EEEEESSTTCGGG------------------------GGSSEEEECCTTC
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCCCE---EEEEcCCCCCchh------------------------hcCCeEEECCCCC
Confidence 45799999 799999999999999876 7888887654211 0011567899998
Q ss_pred CCCCCCHHHHHHHhc--cccEEE
Q psy6053 182 DELAIKESDRQLLAS--EVDIMI 202 (614)
Q Consensus 182 ~~lGLs~~~~~~l~~--~vd~Vi 202 (614)
.+ .+.++.. ++|+|-
T Consensus 63 ~~------~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 63 GD------ALRRVVELEKPHYIV 79 (111)
T ss_dssp HH------HHHHHHHHHCCSEEE
T ss_pred HH------HHHHHHHhhCCceEE
Confidence 65 6766664 578884
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.39 E-value=0.57 Score=40.24 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=46.0
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHHHHHHHhChhhHHhhhhccccccCeEEEEeCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDA 179 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~Rl~~~~~~~~f~~l~~~~p~~~~~~v~~v~gDl 179 (614)
-.|.+|+|.|+ |-+|...+.-+...|.+ +++..++... .+..+++ -.+. ++ |.
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~---~i~~~~~~~~---~~~a~~l----------------Gad~--~i--~~ 81 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAH---VVAFTTSEAK---REAAKAL----------------GADE--VV--NS 81 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCE---EEEEESSGGG---HHHHHHH----------------TCSE--EE--ET
T ss_pred CCCCEEEEecc-chHHHHHHHHhhccccc---chhhccchhH---HHHHhcc----------------CCcE--EE--EC
Confidence 34789999986 88999888777666654 5567765432 1222222 1121 22 33
Q ss_pred CCCCCCCCHHHHHHHhccccEEEEccccc
Q psy6053 180 EADELAIKESDRQLLASEVDIMIHGAATI 208 (614)
Q Consensus 180 ~~~~lGLs~~~~~~l~~~vd~ViH~AA~v 208 (614)
.++ +......+++|+||.+.+..
T Consensus 82 ~~~------~~~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 82 RNA------DEMAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp TCH------HHHHTTTTCEEEEEECCSSC
T ss_pred chh------hHHHHhcCCCceeeeeeecc
Confidence 332 24445556899999998754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=85.37 E-value=0.24 Score=43.50 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=31.1
Q ss_pred CcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 102 GKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 102 ~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
+.+|||+||+|-+|...++-.-..|.+ |++.+|++..
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~---Via~~~~~~k 68 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQ---VVAVSGREST 68 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCC---EEEEESCGGG
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCC---eEEEecchhH
Confidence 458999999999999999888888876 8888987544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.02 E-value=0.6 Score=40.15 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
-.|.+|+|.|+ |-+|...+.-+...|. +|+++.++...
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~---~vi~~~~~~~k 63 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMGA---ETYVISRSSRK 63 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSSTT
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhccc---cccccccchhH
Confidence 35789999986 9999988876666664 48888887543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.00 E-value=1.1 Score=37.23 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.5
Q ss_pred EEEEecccccccHHHHHHHHhhCCCc
Q psy6053 104 TLFMTGASGFLGKVLLEKILRKSPNV 129 (614)
Q Consensus 104 ~VLITGaTGFlG~~Ll~~Ll~~g~~v 129 (614)
+|.|.|++|-+|+.+++.+.+. ++.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-~~~ 25 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-DDL 25 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-TTS
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC
Confidence 5899999999999999988776 554
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=84.96 E-value=0.079 Score=40.43 Aligned_cols=48 Identities=19% Similarity=0.044 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHhhcccccc------ccCCCchhhhhhhhHHHHHHHHHHhhc
Q psy6053 23 CDFAIMFADLAIMFADLPIMF------ADFSLPLEFIRCEVIVSELVMAANKVN 70 (614)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~l~~~~ 70 (614)
.+.+..|.|+|+||+.+.++. .++.+|...+++.+|+.+|+..++...
T Consensus 26 ~d~d~~f~dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~~~v~~~~ 79 (82)
T d1or5a_ 26 GELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTP 79 (82)
T ss_dssp GCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCC
T ss_pred CCcCcCHHHcCCChHhHHHHHHHHHHHHhCcCCHHHHHcCCCHHHHHHHHHhcc
Confidence 456788999999999887776 455777777788999999999887654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.48 E-value=0.18 Score=50.87 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=57.6
Q ss_pred ccCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCCCcCHHHH--H---HHH---HhChhhHHhhhhccccccC
Q psy6053 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQR--I---EEL---FASPLFNLLKSVHGQKIID 170 (614)
Q Consensus 99 ~~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~~~~~~R--l---~~~---~~~~~f~~l~~~~p~~~~~ 170 (614)
..++.+|||.|+.| +|..+++.|.+.| +.+|.+++...=..+-..| + +++ .....-+++++..|+ -
T Consensus 34 ~l~~~kVlvvG~Gg-lG~ei~k~L~~~G--vg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~---v 107 (426)
T d1yovb1 34 LLDTCKVLVIGAGG-LGCELLKNLALSG--FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN---C 107 (426)
T ss_dssp HHHHCCEEEECSST-THHHHHHHHHTTT--CCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT---C
T ss_pred HHhcCeEEEECCCH-HHHHHHHHHHHcC--CCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCC---C
Confidence 35567899999755 9999999999998 4578877654322111111 0 000 001112234444454 5
Q ss_pred eEEEEeCCCCCCCCCCCHHHHHHHhccccEEEEccc
Q psy6053 171 KVLPISGDAEADELAIKESDRQLLASEVDIMIHGAA 206 (614)
Q Consensus 171 ~v~~v~gDl~~~~lGLs~~~~~~l~~~vd~ViH~AA 206 (614)
+|..+..++.+.+ ..++++.|+||.+.-
T Consensus 108 ~i~~~~~~i~~~~--------~~~~~~~DlVi~~~D 135 (426)
T d1yovb1 108 NVVPHFNKIQDFN--------DTFYRQFHIIVCGLD 135 (426)
T ss_dssp CCEEECSCGGGBC--------HHHHTTCSEEEECCS
T ss_pred ceEeeeccccchH--------HHHHHhcchheeccC
Confidence 6788888887643 356789999997743
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=84.17 E-value=1.3 Score=37.83 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.|.+|+|+| +|-+|...+.-+...|. +|++..+++
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga---~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGA---FVVCTARSP 60 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcc---cccccchHH
Confidence 467899997 68899998876666653 588888763
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=83.83 E-value=1.2 Score=37.53 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=28.5
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
|+|.+.| +|-+|+++++.|++.|+. +|++..|++
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~--~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGY--RIYIANRGA 34 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSC--EEEEECSSH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCC--cEEEEeCCh
Confidence 5788888 599999999999999854 688888864
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=83.63 E-value=0.37 Score=42.53 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=29.6
Q ss_pred CCcEEEE-ecccccccHHHHHHHHhhCCCccEEEEEEccCCC
Q psy6053 101 TGKTLFM-TGASGFLGKVLLEKILRKSPNVKKIYILMRQKKG 141 (614)
Q Consensus 101 ~~~~VLI-TGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~~ 141 (614)
.|.+|+| +||+|-+|...++-....|.+ |++.+|.+++
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~---vI~~v~~~~~ 66 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFN---SISVIRDRPN 66 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCE---EEEEECCCTT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCe---EEEEEecccc
Confidence 4667777 699999999998877777654 8888887654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.17 E-value=0.57 Score=40.24 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 101 ~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
.+.+|+|.||+|-+|...+..+...|.. +|++..+++
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~--~V~~~~~~~ 63 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVRE 63 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSH
T ss_pred CCCEEEEEeccccceeeeeecccccccc--cccccccch
Confidence 4678999999999999888888877643 688877763
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=83.11 E-value=1 Score=38.68 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=26.1
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPN 128 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~ 128 (614)
.+||+|.|.|.+.-+|+-|...|.+.|..
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~gat 63 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGCT 63 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCE
T ss_pred cccceEEEEeccccccHHHHHHHHHhhcc
Confidence 57999999999999999999999888755
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=82.77 E-value=0.12 Score=39.71 Aligned_cols=47 Identities=17% Similarity=0.027 Sum_probs=38.9
Q ss_pred cccchHHHHHHHhhcccccc------ccCCCchhhhhhhhHHHHHHHHHHhhc
Q psy6053 24 DFAIMFADLAIMFADLPIMF------ADFSLPLEFIRCEVIVSELVMAANKVN 70 (614)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~l~~~~ 70 (614)
+.+..|.|+|+||+.+.++. .++.+|...+++.+|+.+|+..+.+.+
T Consensus 30 ~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~i~~~l 82 (86)
T d2af8a_ 30 FLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGAL 82 (86)
T ss_dssp SCSSSHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHHHHHHH
T ss_pred ccCCCHHHcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 35678999999999777766 466788888889999999999988764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=82.31 E-value=0.84 Score=38.91 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=28.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
|+|-+.| .|-+|..+++.|++.|++ |++..|.+
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~---V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYS---LVVSDRNP 33 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCe---EEEEeCCc
Confidence 5788887 799999999999999987 77887763
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=81.93 E-value=0.57 Score=41.37 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=29.2
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEcc
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQ 138 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~ 138 (614)
+..++|.|.| +|-.|.++...|.+.|++ |.+..|.
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g~~---V~l~~r~ 39 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKCRE---VCVWHMN 39 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTEEE---EEEECSC
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcCCe---EEEEEec
Confidence 4456799999 688999999999999876 7888875
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.19 E-value=0.63 Score=40.65 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=28.4
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
|+|.|.| +|-.|..|+..|.+.|++ |....|..
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~---V~l~~r~~ 33 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNE---VRIWGTEF 33 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCE---EEEECCGG
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCE---EEEEEecc
Confidence 6899999 599999999999999876 77777754
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.79 E-value=1.2 Score=39.00 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=29.7
Q ss_pred cCCcEEEEecccccccHHHHHHHHhhCCCccEEEEEEccCC
Q psy6053 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140 (614)
Q Consensus 100 ~~~~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~~ 140 (614)
..+++|.|.| .|.+|+.+++.|..-|.+ |+...+..+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~---v~~~d~~~~ 78 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLGMY---VYFYDIENK 78 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCE---EEEECSSCC
T ss_pred ccceEEEEee-cccchhhhhhhcccccce---Eeecccccc
Confidence 5689999997 899999999988776544 777777644
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.21 E-value=0.55 Score=39.80 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=27.3
Q ss_pred cEEEEecccccccHHHHHHHHhhCCCccEEEEEEccC
Q psy6053 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139 (614)
Q Consensus 103 ~~VLITGaTGFlG~~Ll~~Ll~~g~~v~~V~~LvR~~ 139 (614)
|+|.+.| +|-+|+.+++.|++.+++ |++..|++
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~---i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHE---LIISGSSL 33 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCE---EEEECSSH
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCe---EEEEcChH
Confidence 5688887 899999999999999766 77777753
|