Psyllid ID: psy6082

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----

DELNTGIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLTWAEN

ccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccc

cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHEHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

delntgivsdgalLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILsykcgsefsLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNlqsfephqLLDCLLTWQKQNFIRCTLTWAEN

delntgivSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENeagnkaidsLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLTWAEN

******IVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLTWA**

****TGIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLTWAEN

oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo

ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo

ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		275	2.2.26 [Sep-21-2011]
Q704E8		752	ATP-binding cassette sub-	yes	N/A	0.818	0.299	0.586	9e-81
Q61102		752	ATP-binding cassette sub-	yes	N/A	0.818	0.299	0.582	4e-80
O75027		752	ATP-binding cassette sub-	yes	N/A	0.818	0.299	0.578	1e-79
Q9LVM1		728	ABC transporter B family	yes	N/A	0.727	0.274	0.580	9e-69
Q9FUT3		678	ABC transporter B family	no	N/A	0.730	0.296	0.549	6e-65
Q9M0G9		680	ABC transporter B family	no	N/A	0.730	0.295	0.549	1e-62
Q4PH16		763	Iron-sulfur clusters tran	N/A	N/A	0.825	0.297	0.473	4e-60
Q2ULH4		720	Iron-sulfur clusters tran	yes	N/A	0.712	0.272	0.524	1e-59
Q4WLN7		727	Iron-sulfur clusters tran	yes	N/A	0.712	0.269	0.514	2e-58
Q8T9W2		697	ABC transporter B family	yes	N/A	0.785	0.309	0.473	3e-58

>sp\|Q704E8\|ABCB7_RAT ATP-binding cassette sub-family B member 7, mitochondrial OS=Rattus norvegicus GN=Abcb7 PE=2 SV=1	Back alignment and function desciption

 Score =  300 bits (767), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 139/237 (58%), Positives = 190/237 (80%), Gaps = 12/237 (5%)

Query: 11  GALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLH 70
           G +L L++A + +   AT++++GYG++R  ++ FNE+RNAVF  VAQ SIR+IAKNVFLH
Sbjct: 173 GNMLNLSDAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLH 232

Query: 71  LHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTL 130
           LHNLDL FHL+RQTGALSK IDRG+RGI+FVLSA+VFN++P +FE+ L+           
Sbjct: 233 LHNLDLGFHLSRQTGALSKAIDRGTRGISFVLSALVFNLLPIVFEMTLV----------- 281

Query: 131 ISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINY 190
            SS+L YKCG++F+L+ +  +G YTA+T+++T+WRT+FR+ MNKA+N+AGN AIDSL+NY
Sbjct: 282 -SSVLYYKCGAQFALVTLGTLGAYTAFTVAVTRWRTRFRIEMNKADNDAGNAAIDSLLNY 340

Query: 191 ETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQS 247
           ETVKYFNNEK+EA RY+G LK YE A+LK++++LA LNFGQSAI  + LT ++ L S
Sbjct: 341 ETVKYFNNEKYEAQRYDGFLKTYETASLKSTSTLAMLNFGQSAIFSVGLTAIMVLAS 397

Could be involved in the transport of heme from the mitochondria to the cytosol. Plays a central role in the maturation of cytosolic iron-sulfur (Fe/S) cluster-containing proteins.
Rattus norvegicus (taxid: 10116)

>sp\|Q61102\|ABCB7_MOUSE ATP-binding cassette sub-family B member 7, mitochondrial OS=Mus musculus GN=Abcb7 PE=1 SV=3	Back alignment and function description

>sp\|O75027\|ABCB7_HUMAN ATP-binding cassette sub-family B member 7, mitochondrial OS=Homo sapiens GN=ABCB7 PE=1 SV=2	Back alignment and function description

>sp\|Q9LVM1\|AB25B_ARATH ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1	Back alignment and function description

>sp\|Q9FUT3\|AB23B_ARATH ABC transporter B family member 23, mitochondrial OS=Arabidopsis thaliana GN=ABCB23 PE=2 SV=1	Back alignment and function description

>sp\|Q9M0G9\|AB24B_ARATH ABC transporter B family member 24, mitochondrial OS=Arabidopsis thaliana GN=ABCB24 PE=1 SV=1	Back alignment and function description

>sp\|Q4PH16\|ATM1_USTMA Iron-sulfur clusters transporter ATM1, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ATM1 PE=3 SV=1	Back alignment and function description

>sp\|Q2ULH4\|ATM1_ASPOR Iron-sulfur clusters transporter atm1, mitochondrial OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atm1 PE=3 SV=1	Back alignment and function description

>sp\|Q4WLN7\|ATM1_ASPFU Iron-sulfur clusters transporter atm1, mitochondrial OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=atm1 PE=3 SV=1	Back alignment and function description

>sp\|Q8T9W2\|ABCB5_DICDI ABC transporter B family member 5 OS=Dictyostelium discoideum GN=abcB5 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		275
289740471		722	mitochondrial Fe/S cluster exporter [Glo	0.843	0.321	0.676	9e-90
332000065		743	RH32556p [Drosophila melanogaster]	0.843	0.312	0.688	2e-89
307205406		768	ATP-binding cassette sub-family B member	0.854	0.305	0.673	5e-89
317453644		709	AT07502p [Drosophila melanogaster]	0.843	0.327	0.684	9e-89
45551502		709	ABCB7, isoform B [Drosophila melanogaste	0.843	0.327	0.684	9e-89
45551501		743	ABCB7, isoform A [Drosophila melanogaste	0.843	0.312	0.684	1e-88
15291423		606	GH20617p [Drosophila melanogaster] gi\|22	0.854	0.387	0.680	1e-88
195490469		743	GE21170 [Drosophila yakuba] gi\|194179254	0.843	0.312	0.684	1e-88
195336636		743	GM14429 [Drosophila sechellia] gi\|194128	0.843	0.312	0.684	1e-88
194750094		692	GF10427 [Drosophila ananassae] gi\|190624	0.854	0.339	0.676	2e-88

>gi\|289740471\|gb\|ADD18983.1\| mitochondrial Fe/S cluster exporter [Glossina morsitans morsitans]	Back alignment and taxonomy information

 Score =  335 bits (860), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 165/244 (67%), Positives = 194/244 (79%), Gaps = 12/244 (4%)

Query: 6   GIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAK 65
           G V     L +   TD +++ AT++++GYGIAR C++GFNELRNAVFA VA  SIRKIA 
Sbjct: 179 GAVDTLGTLTMDTPTDTVLSVATAMLIGYGIARACAAGFNELRNAVFAKVAHHSIRKIAT 238

Query: 66  NVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSY 125
           NVFLHLH+LDLAFHLN+QTGALSK IDRGSRGINFVLSAMVFNIVPT+FELAL+SSIL  
Sbjct: 239 NVFLHLHHLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTVFELALVSSILGL 298

Query: 126 KCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAID 185
           KCG              F+ +++ CVG+Y AYTLS+TQWRT+FRV MN+AENEAGNKA+D
Sbjct: 299 KCGL------------AFAGVSMGCVGVYAAYTLSVTQWRTKFRVYMNQAENEAGNKAVD 346

Query: 186 SLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNL 245
           SLINYETVKYFNNEKFEA RY  VLKKYE A+LKTSTSLA LNFGQ+AI    L+L++ L
Sbjct: 347 SLINYETVKYFNNEKFEASRYNDVLKKYESASLKTSTSLALLNFGQNAIFSTALSLIMVL 406

Query: 246 QSFE 249
            + E
Sbjct: 407 AAQE 410

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|332000065\|gb\|AED98581.1\| RH32556p [Drosophila melanogaster]	Back alignment and taxonomy information

>gi\|307205406\|gb\|EFN83747.1\| ATP-binding cassette sub-family B member 7, mitochondrial [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|317453644\|gb\|ADV19030.1\| AT07502p [Drosophila melanogaster]	Back alignment and taxonomy information

>gi\|45551502\|ref\|NP_728643.2\| ABCB7, isoform B [Drosophila melanogaster] gi\|45445738\|gb\|AAF47524.3\| ABCB7, isoform B [Drosophila melanogaster]	Back alignment and taxonomy information

>gi\|45551501\|ref\|NP_728642.2\| ABCB7, isoform A [Drosophila melanogaster] gi\|45445737\|gb\|AAF47525.2\| ABCB7, isoform A [Drosophila melanogaster]	Back alignment and taxonomy information

>gi\|15291423\|gb\|AAK92980.1\| GH20617p [Drosophila melanogaster] gi\|220945504\|gb\|ACL85295.1\| CG7955-PC [synthetic construct] gi\|220955320\|gb\|ACL90203.1\| CG7955-PC [synthetic construct]	Back alignment and taxonomy information

>gi\|195490469\|ref\|XP_002093153.1\| GE21170 [Drosophila yakuba] gi\|194179254\|gb\|EDW92865.1\| GE21170 [Drosophila yakuba]	Back alignment and taxonomy information

>gi\|195336636\|ref\|XP_002034941.1\| GM14429 [Drosophila sechellia] gi\|194128034\|gb\|EDW50077.1\| GM14429 [Drosophila sechellia]	Back alignment and taxonomy information

>gi\|194750094\|ref\|XP_001957465.1\| GF10427 [Drosophila ananassae] gi\|190624747\|gb\|EDV40271.1\| GF10427 [Drosophila ananassae]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		275
FB\|FBgn0035244		743	ABCB7 [Drosophila melanogaster	0.843	0.312	0.680	1.4e-80
UNIPROTKB\|E1C0W9		684	ABCB7 "Uncharacterized protein	0.843	0.339	0.615	8.4e-74
ZFIN\|ZDB-GENE-050517-10		743	abcb7 "ATP-binding cassette, s	0.843	0.312	0.599	8.4e-74
RGD\|1303086		752	Abcb7 "ATP-binding cassette, s	0.843	0.308	0.578	4.6e-73
UNIPROTKB\|Q704E8		752	Abcb7 "ATP-binding cassette su	0.843	0.308	0.578	4.6e-73
UNIPROTKB\|E1BPL3		753	ABCB7 "Uncharacterized protein	0.843	0.308	0.578	2e-72
MGI\|MGI:109533		752	Abcb7 "ATP-binding cassette, s	0.843	0.308	0.574	2.5e-72
UNIPROTKB\|B4DGL8		702	ABCB7 "ATP-binding cassette su	0.843	0.330	0.570	1.4e-71
UNIPROTKB\|G3XAC4		712	ABCB7 "ATP-binding cassette su	0.843	0.325	0.570	1.4e-71
UNIPROTKB\|O75027		752	ABCB7 "ATP-binding cassette su	0.843	0.308	0.570	1.4e-71

FB\|FBgn0035244 ABCB7 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 166/244 (68%), Positives = 193/244 (79%)

Query:     6 GIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAK 65
             G V     L +  A DA++++AT+++LGYGIAR  ++GFNELRNAVFA VA  SIRKIA 
Sbjct:   181 GAVDTMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIAS 240

Query:    66 NVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSY 125
             NVFLHLHNLDLAFHLN+QTGALSK IDRGSRGINFVLSAMVFNIVPTIFELAL+SSIL  
Sbjct:   241 NVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILGV 300

Query:   126 KCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAID 185
             KCG   + +            ++ CVGIY AYTLS+TQWRTQFRV MN+AENEAGNKA+D
Sbjct:   301 KCGLAFAGV------------SMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAVD 348

Query:   186 SLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNL 245
             SLINYETVKYFNNEK+EA  Y  VLKKYE A+LKTS+SLA LNFGQ+AI    L+L++ L
Sbjct:   349 SLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFSSALSLIMVL 408

Query:   246 QSFE 249
              + E
Sbjct:   409 AAKE 412

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;IBA

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0015886 "heme transport" evidence=ISS

GO:0015232 "heme transporter activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

UNIPROTKB\|E1C0W9 ABCB7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050517-10 abcb7 "ATP-binding cassette, sub-family B (MDR/TAP), member 7" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1303086 Abcb7 "ATP-binding cassette, subfamily B (MDR/TAP), member 7" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q704E8 Abcb7 "ATP-binding cassette sub-family B member 7, mitochondrial" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BPL3 ABCB7 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:109533 Abcb7 "ATP-binding cassette, sub-family B (MDR/TAP), member 7" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|B4DGL8 ABCB7 "ATP-binding cassette sub-family B member 7, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G3XAC4 ABCB7 "ATP-binding cassette sub-family B member 7, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|O75027 ABCB7 "ATP-binding cassette sub-family B member 7, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4WLN7	ATM1_ASPFU	No assigned EC number	0.5144	0.7127	0.2696	yes	N/A
Q2ULH4	ATM1_ASPOR	No assigned EC number	0.5240	0.7127	0.2722	yes	N/A
O75027	ABCB7_HUMAN	No assigned EC number	0.5780	0.8181	0.2992	yes	N/A
Q704E8	ABCB7_RAT	No assigned EC number	0.5864	0.8181	0.2992	yes	N/A
Q4HVU7	ATM1_GIBZE	No assigned EC number	0.5114	0.7527	0.2965	yes	N/A
Q5B1Q2	ATM1_EMENI	No assigned EC number	0.5240	0.7127	0.2718	yes	N/A
Q61102	ABCB7_MOUSE	No assigned EC number	0.5822	0.8181	0.2992	yes	N/A
Q9LVM1	AB25B_ARATH	No assigned EC number	0.5801	0.7272	0.2747	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		275
COG5265		497	COG5265, ATM1, ABC-type transport system involved	1e-64
pfam00664		274	pfam00664, ABC_membrane, ABC transporter transmemb	6e-14
COG1132		567	COG1132, MdlB, ABC-type multidrug transport system	1e-13
COG2274		709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	3e-07
TIGR02204		576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	3e-04

>gnl\|CDD\|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  209 bits (534), Expect = 1e-64
 Identities = 86/197 (43%), Positives = 129/197 (65%), Gaps = 12/197 (6%)

Query: 47  LRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV 106
           LR+ +F+ V Q ++R +A   F HLH+L L FHL R+TG LS+ I+RG++GI  +L  ++
Sbjct: 1   LRDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWIL 60

Query: 107 FNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRT 166
           FNI+PT+ E++L++ IL    G              F+L  +  V +Y  +T+ ++ WRT
Sbjct: 61  FNILPTLVEISLVAVILWRVYGW------------WFALTTLVTVILYLLFTVIVSDWRT 108

Query: 167 QFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLAT 226
            FR  MN A+++A  KAIDSL+N+ETVKYF NE++EA RY+  L+ YE+AA+K   SL  
Sbjct: 109 DFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168

Query: 227 LNFGQSAIGKLMLTLVL 243
           LNFGQ+AI    L +++
Sbjct: 169 LNFGQTAIFSTGLRVMM 185

Length = 497

>gnl\|CDD\|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region	Back alignment and domain information

>gnl\|CDD\|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>gnl\|CDD\|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>gnl\|CDD\|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		275
KOG0058\|consensus		716		99.97
PF00664		275	ABC_membrane: ABC transporter transmembrane region	99.97
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.95
KOG0057\|consensus		591		99.94
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	99.93
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	99.93
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.93
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	99.93
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	99.93
TIGR00958		711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.93
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.93
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.93
TIGR01192		585	chvA glucan exporter ATP-binding protein. This mod	99.93
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	99.93
TIGR02203		571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.93
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	99.92
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	99.92
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	99.92
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.9
KOG0055\|consensus		1228		99.9
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.9
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.9
TIGR01194		555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.89
PRK10790		592	putative multidrug transporter membrane\ATP-bindin	99.89
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.88
COG1132		567	MdlB ABC-type multidrug transport system, ATPase a	99.88
TIGR01842		544	type_I_sec_PrtD type I secretion system ABC transp	99.88
COG5265		497	ATM1 ABC-type transport system involved in Fe-S cl	99.88
COG4988		559	CydD ABC-type transport system involved in cytochr	99.86
KOG0056\|consensus		790		99.85
TIGR00954		659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.84
KOG0055\|consensus		1228		99.84
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.83
PTZ00243		1560	ABC transporter; Provisional	99.81
PRK10522		547	multidrug transporter membrane component/ATP-bindi	99.8
KOG0054\|consensus		1381		99.77
COG4987		573	CydC ABC-type transport system involved in cytochr	99.76
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.76
PLN03130		1622	ABC transporter C family member; Provisional	99.75
PLN03232		1495	ABC transporter C family member; Provisional	99.72
PLN03232		1495	ABC transporter C family member; Provisional	99.71
PTZ00243		1560	ABC transporter; Provisional	99.71
PLN03130		1622	ABC transporter C family member; Provisional	99.71
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.67
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.66
COG4618		580	ArpD ABC-type protease/lipase transport system, AT	99.6
KOG0054\|consensus		1381		99.59
COG4615		546	PvdE ABC-type siderophore export system, fused ATP	99.49
PF06472		281	ABC_membrane_2: ABC transporter transmembrane regi	99.21
COG4178		604	ABC-type uncharacterized transport system, permeas	99.16
PRK11098		409	microcin B17 transporter; Reviewed	99.03
PRK12369		326	putative transporter; Reviewed	99.0
PF13748		237	ABC_membrane_3: ABC transporter transmembrane regi	98.52
PF05992		315	SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009	98.19
KOG0060\|consensus		659		97.95
PF00664		275	ABC_membrane: ABC transporter transmembrane region	97.34
PRK10733		644	hflB ATP-dependent metalloprotease; Reviewed	96.82
KOG0064\|consensus		728		96.77
TIGR00954		659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	96.4
TIGR00958		711	3a01208 Conjugate Transporter-2 (CT2) Family prote	96.34
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	96.2
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	95.65
COG1133		405	SbmA ABC-type long-chain fatty acid transport syst	95.37
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	95.11
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	95.09
TIGR01842		544	type_I_sec_PrtD type I secretion system ABC transp	95.04
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	94.86
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	94.68
TIGR01192		585	chvA glucan exporter ATP-binding protein. This mod	94.6
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	94.53
PF06472		281	ABC_membrane_2: ABC transporter transmembrane regi	94.35
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	93.86
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	93.6
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	93.47
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	93.32
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	92.98
TIGR02203		571	MsbA_lipidA lipid A export permease/ATP-binding pr	92.85
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	91.5
PRK10522		547	multidrug transporter membrane component/ATP-bindi	89.89
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	88.47
TIGR01194		555	cyc_pep_trnsptr cyclic peptide transporter. This m	83.33

>KOG0058\|consensus	Back alignment and domain information

Probab=99.97  E-value=1.7e-28  Score=223.23  Aligned_cols=234  Identities=14%  Similarity=0.105  Sum_probs=222.8

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHH
Q psy6082          24 IASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLS  103 (275)
Q Consensus        24 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~  103 (275)
                      .....-.+..+.++.+++++++..+.++....++++..++|.++|+++++++.+|||++++||+++|++.|+..+.+.+.
T Consensus       184 ~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs  263 (716)
T KOG0058|consen  184 ADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVS  263 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHH
Confidence            44444455666666777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy6082         104 AMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKA  183 (275)
Q Consensus       104 ~~~~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (275)
                      ..+...+++.+..++.+++|             ++.||.++++.++.+|+...+...++++.++..++.+++.++.++..
T Consensus       264 ~nls~~lR~~~~~~g~~~~M-------------~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~va  330 (716)
T KOG0058|consen  264 QNLSDGLRNLVQGFGGLGFM-------------FSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVA  330 (716)
T ss_pred             HHHHHHHHHHHHHHHhHHHH-------------hhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999             99999999999999999999999999999999999999999999999


Q ss_pred             HHhhcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHH
Q psy6082         184 IDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQ  263 (275)
Q Consensus       184 ~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~  263 (275)
                      .|.+.++++||+|+.|+.|.+||.+..++..+...|.......+....++...+..+.++++|++++..|.||.|++.+|
T Consensus       331 eE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sF  410 (716)
T KOG0058|consen  331 EEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSF  410 (716)
T ss_pred             HHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy6082         264 NFIRCTL  270 (275)
Q Consensus       264 ~~~~~~~  270 (275)
                      -.|+..+
T Consensus       411 llY~~~~  417 (716)
T KOG0058|consen  411 LLYQVQL  417 (716)
T ss_pred             HHHHHHH
Confidence            9888765

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>KOG0057\|consensus	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>TIGR01192 chvA glucan exporter ATP-binding protein	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>KOG0055\|consensus	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter	Back alignment and domain information

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family	Back alignment and domain information

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0056\|consensus	Back alignment and domain information

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei	Back alignment and domain information

>KOG0055\|consensus	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional	Back alignment and domain information

>KOG0054\|consensus	Back alignment and domain information

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	Back alignment and domain information

>KOG0054\|consensus	Back alignment and domain information

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	Back alignment and domain information

>PRK11098 microcin B17 transporter; Reviewed	Back alignment and domain information

>PRK12369 putative transporter; Reviewed	Back alignment and domain information

>PF13748 ABC_membrane_3: ABC transporter transmembrane region	Back alignment and domain information

>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R	Back alignment and domain information

>KOG0060\|consensus	Back alignment and domain information

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed	Back alignment and domain information

>KOG0064\|consensus	Back alignment and domain information

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei	Back alignment and domain information

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>TIGR01192 chvA glucan exporter ATP-binding protein	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		275
4a82_A		578	Cystic fibrosis transmembrane conductance regulat;	5e-10
2yl4_A		595	ATP-binding cassette SUB-family B member 10, mitoc	3e-08
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-08
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-06
3b60_A		582	Lipid A export ATP-binding/permease protein MSBA;	2e-07
3b5x_A		582	Lipid A export ATP-binding/permease protein MSBA;	1e-06
3qf4_B		598	Uncharacterized ABC transporter ATP-binding prote	2e-06

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578	Back alignment and structure

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 40/225 (17%), Positives = 70/225 (31%), Gaps = 35/225 (15%)

Query: 30  IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGAL-S 88
           I +   I  I       +R  +    + + +  I K ++ HL  L   F+ N Q G + S
Sbjct: 63  IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122

Query: 89  KII-DRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLA 147
           ++I D         +   + NI      + +  SI+ +     +   L        +L A
Sbjct: 123 RVINDVEQ--TKDFILTGLMNIWLDCITIIIALSIMFF-----LDVKL--------TLAA 167

Query: 148 VSCVGIYTAYTLSITQW-RTQFR--------VNMNKAENEAGNKAIDSLINYETVKYFNN 198
           +     Y           R   R        V     E   G            VK F  
Sbjct: 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGIS---------VVKSFAI 218

Query: 199 EKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVL 243
           E  EA  ++     +   ALK +   A      + +  +   +V+
Sbjct: 219 EDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVI 263

PyMOL of 4a82

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284	Back alignment and structure

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582	Back alignment and structure

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582	Back alignment and structure

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		275
3b5x_A		582	Lipid A export ATP-binding/permease protein MSBA;	99.94
3b60_A		582	Lipid A export ATP-binding/permease protein MSBA;	99.94
2yl4_A		595	ATP-binding cassette SUB-family B member 10, mitoc	99.94
4f4c_A		1321	Multidrug resistance protein PGP-1; ABC transporte	99.94
3qf4_B		598	Uncharacterized ABC transporter ATP-binding prote	99.94
3qf4_A		587	ABC transporter, ATP-binding protein; multidrug tr	99.94
4a82_A		578	Cystic fibrosis transmembrane conductance regulat;	99.94
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
4f4c_A		1321	Multidrug resistance protein PGP-1; ABC transporte	99.85
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.85
3qf4_A		587	ABC transporter, ATP-binding protein; multidrug tr	93.89
3b5x_A		582	Lipid A export ATP-binding/permease protein MSBA;	92.74
3qf4_B		598	Uncharacterized ABC transporter ATP-binding prote	92.15
3b60_A		582	Lipid A export ATP-binding/permease protein MSBA;	89.06
4a82_A		578	Cystic fibrosis transmembrane conductance regulat;	87.09
2yl4_A		595	ATP-binding cassette SUB-family B member 10, mitoc	85.56

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}	Back alignment and structure

Probab=99.94  E-value=8e-25  Score=203.76  Aligned_cols=228  Identities=15%  Similarity=0.093  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHHHHHHH
Q psy6082          32 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVP  111 (275)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~i~  111 (275)
                      ++++++.++..++.++..+...+.+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++.+...+..++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~  148 (582)
T 3b5x_A           69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVR  148 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566678889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcchH
Q psy6082         112 TIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYE  191 (275)
Q Consensus       112 ~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~  191 (275)
                      .++.+++.++++             +.++|+++++++++.|+..++...+.++.++..++.++..++..+.+.|.++|++
T Consensus       149 ~~~~~i~~~~~l-------------~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~  215 (582)
T 3b5x_A          149 EGASIIGLLTLM-------------FWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHK  215 (582)
T ss_pred             HHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999             8999999999999999999888999999999999999999999999999999999


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhc
Q psy6082         192 TVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFIRCTLT  271 (275)
Q Consensus       192 ~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~~~~~~  271 (275)
                      +||+||.|+.+.++|++..++..+...+..+.......+.+++..+..++++++|++++.+|.+|+|++..+..+...+.
T Consensus       216 ~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~  295 (582)
T 3b5x_A          216 VVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLM  295 (582)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887766655444


Q ss_pred             c
Q psy6082         272 W  272 (275)
Q Consensus       272 ~  272 (275)
                      .
T Consensus       296 ~  296 (582)
T 3b5x_A          296 R  296 (582)
T ss_pred             H
Confidence            3

PyMOL of 3b5x

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A	Back alignment and structure

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}	Back alignment and structure

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*	Back alignment and structure

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*	Back alignment and structure

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}	Back alignment and structure

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A	Back alignment and structure

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		275
d2hyda2		323	Putative multidrug export ATP-binding/permease pro	99.96
d3b60a2		319	Multidrug resistance ABC transporter MsbA, N-termi	99.96
d3b60a2		319	Multidrug resistance ABC transporter MsbA, N-termi	97.29
d2hyda2		323	Putative multidrug export ATP-binding/permease pro	96.6

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.96  E-value=6.7e-28  Score=205.15  Aligned_cols=234  Identities=15%  Similarity=0.082  Sum_probs=218.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhhcCCchhhhHhhcccchHHHHHHHHH
Q psy6082          27 ATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV  106 (275)
Q Consensus        27 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~  106 (275)
                      ...+.++++++.++..++.+++.+...+.+.++..++|+++++|++++|+++|+++++|++++++++|++.+++.+...+
T Consensus        60 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~  139 (323)
T d2hyda2          60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGL  139 (323)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhh
Confidence            34444555566677788999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccccccceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q psy6082         107 FNIVPTIFELALISSILSYKCGTLISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDS  186 (275)
Q Consensus       107 ~~~i~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  186 (275)
                      ...+..++.+++.++++             +.++|.++++.++..++...+.....++.++..++.++..++..+.+.|.
T Consensus       140 ~~~~~~~~~~i~~~~~l-------------~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  206 (323)
T d2hyda2         140 MNIWLDCITIIIALSIM-------------FFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHER  206 (323)
T ss_dssp             CCHHHHHHHHHHHHHHH-------------HHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcchhhhhhhhhhhhh-------------hhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999             99999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHH
Q psy6082         187 LINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGQSAIGKLMLTLVLNLQSFEPHQLLDCLLTWQKQNFI  266 (275)
Q Consensus       187 l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~ltiG~~~~~~~~  266 (275)
                      ++|+++||.+|.|+++.+++++..++..+...|..+...........+..+..++++++|++++.+|.+|+|++..+..+
T Consensus       207 ~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~  286 (323)
T d2hyda2         207 VQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGY  286 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHT
T ss_pred             hcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             Hhhhccc
Q psy6082         267 RCTLTWA  273 (275)
Q Consensus       267 ~~~~~~~  273 (275)
                      ...+.+|
T Consensus       287 ~~~l~~~  293 (323)
T d2hyda2         287 LELLFGP  293 (323)
T ss_dssp             HHHHTTH
T ss_pred             HHHHHHH
Confidence            6666554

PyMOL of d2hyda2

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure