Psyllid ID: psy6083

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHcccccccEEEEccccccEEEEEEccEEEccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEccHHHHcccccccHHHHHHHcccccEEEEEccEEEEEEEEccEEEEEcHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnpkntvfdakrligrkfddpkiqqdmkhwpftvvndcskpkiqvefkgerktfapeEISSMVLTKMKETALYQ
Flexible Loop (DISEMBL)
mnpkntvfdakrligrkfddpkiqqdmkhwpftvvndcskPKIQVefkgerktfapeeissmvltkmketalyq
Low Complexity Region (SEG)
MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ
Disordered region (IsUnstruct)
***********RLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF***************************
Disordered Region (DISOPRED)
MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAL**
Disordered Region (DISEMBL)
MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ
Disordered Region (DISPRO)
**PKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
P41826	640	Heat shock protein 70 A2	N/A	N/A	0.959	0.110	0.943	3e-35
P41825	640	Heat shock protein 70 A1	N/A	N/A	0.959	0.110	0.943	3e-35
P41827	640	Heat shock protein 70 B2	N/A	N/A	0.959	0.110	0.929	7e-34
Q9GSU4	643	Major heat shock 70 kDa p	N/A	N/A	0.959	0.110	0.830	8e-31
Q9VG58	641	Major heat shock 70 kDa p	yes	N/A	0.959	0.110	0.830	5e-30
Q9BIR7	641	Major heat shock 70 kDa p	yes	N/A	0.959	0.110	0.830	5e-30
Q9BIS2	641	Major heat shock 70 kDa p	yes	N/A	0.959	0.110	0.830	5e-30
Q8INI8	641	Major heat shock 70 kDa p	yes	N/A	0.959	0.110	0.830	5e-30
O73885	646	Heat shock cognate 71 kDa	yes	N/A	0.959	0.109	0.788	3e-29
P02825	642	Major heat shock 70 kDa p	yes	N/A	0.959	0.110	0.830	4e-29

>sp|P41826|HSP72_ANOAL Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Anopheles albimanus (taxid: 7167)

>sp|P41825|HSP71_ANOAL Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Anopheles albimanus (taxid: 7167)

>sp|P41827|HSP74_ANOAL Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1

 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 66/71 (92%), Positives = 67/71 (94%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVND  KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDGGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Anopheles albimanus (taxid: 7167)

>sp|Q9GSU4|HSP72_DROSI Major heat shock 70 kDa protein Ba OS=Drosophila simulans GN=Hsp70Ba PE=2 SV=2

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+DC KPKI VE+KGE K FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDCGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMKETA 71
           SMVL KMKETA
Sbjct: 118 SMVLAKMKETA 128

Drosophila simulans (taxid: 7240)

>sp|Q9VG58|HSP74_DROME Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 118 SMVLTKMKETA 128

Drosophila melanogaster (taxid: 7227)

>sp|Q9BIR7|HSP75_DROME Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 118 SMVLTKMKETA 128

Drosophila melanogaster (taxid: 7227)

>sp|Q9BIS2|HSP73_DROME Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 118 SMVLTKMKETA 128

Drosophila melanogaster (taxid: 7227)

>sp|Q8INI8|HSP72_DROME Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 118 SMVLTKMKETA 128

Drosophila melanogaster (taxid: 7227)

>sp|O73885|HSP7C_CHICK Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 62/71 (87%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPFTVVND  +PK+QVE+KGE K+F PEEIS
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDSVVQSDMKHWPFTVVNDAGRPKVQVEYKGETKSFYPEEIS 120

Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

Chaperone. May play a role in regulating apoptosis during embryonic development.

Gallus gallus (taxid: 9031)

>sp|P02825|HSP71_DROME Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=2 SV=3

 Score =  126 bits (317), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 118 SMVLTKMKETA 128

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
1170376	640	RecName: Full=Heat shock protein 70 A2 g	0.959	0.110	0.943	1e-33
312379539	640	hypothetical protein AND_08586 [Anophele	0.959	0.110	0.943	1e-33
312376960	631	hypothetical protein AND_11878 [Anophele	0.959	0.112	0.943	1e-33
1170372	640	RecName: Full=Heat shock protein 70 A1 g	0.959	0.110	0.943	1e-33
312375481	640	hypothetical protein AND_14112 [Anophele	0.959	0.110	0.943	1e-33
308097853	653	hsp70 [Bemisia tabaci]	0.959	0.108	0.943	3e-33
295393296	653	heat shock protein 70 [Bemisia tabaci]	0.959	0.108	0.929	2e-32
159592	502	heat shock protein 70, hsp70A2, partial	0.959	0.141	0.929	2e-32
1170377	640	RecName: Full=Heat shock protein 70 B2 g	0.959	0.110	0.929	3e-32
423292561	643	70 kDa heat shock protein [Lygus hesperu	0.959	0.110	0.901	3e-32

>gi|1170376|sp|P41826.1|HSP72_ANOAL RecName: Full=Heat shock protein 70 A2 gi|159590|gb|AAC41541.1| heat shock protein 70, hsp70A2 [Anopheles albimanus]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Source: Anopheles albimanus

Species: Anopheles albimanus

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379539|gb|EFR25780.1| hypothetical protein AND_08586 [Anopheles darlingi]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376960|gb|EFR23904.1| hypothetical protein AND_11878 [Anopheles darlingi]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1170372|sp|P41825.1|HSP71_ANOAL RecName: Full=Heat shock protein 70 A1 gi|159589|gb|AAC41540.1| heat shock protein 70, hsp70A2 [Anopheles albimanus]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Source: Anopheles albimanus

Species: Anopheles albimanus

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375481|gb|EFR22847.1| hypothetical protein AND_14112 [Anopheles darlingi]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308097853|gb|ADO14473.1| hsp70 [Bemisia tabaci]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDCSKPKIQVEFKGE K FAPEEIS
Sbjct: 61  MNPQNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCSKPKIQVEFKGETKRFAPEEIS 120

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 121 SMVLTKMKETA 131

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295393296|gb|ADG03468.1| heat shock protein 70 [Bemisia tabaci]

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/71 (92%), Positives = 68/71 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDCSKPKIQVEFKGE K FAPEEIS
Sbjct: 61  MNPQNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCSKPKIQVEFKGETKRFAPEEIS 120

Query: 61  SMVLTKMKETA 71
           SMVLTKM+ETA
Sbjct: 121 SMVLTKMRETA 131

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|159592|gb|AAC41542.1| heat shock protein 70, hsp70A2, partial [Anopheles albimanus]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/71 (92%), Positives = 67/71 (94%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVND  KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDGGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Source: Anopheles albimanus

Species: Anopheles albimanus

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1170377|sp|P41827.1|HSP74_ANOAL RecName: Full=Heat shock protein 70 B2 gi|159593|gb|AAC41543.1| heat shock protein 70, hsp70A2 [Anopheles albimanus]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/71 (92%), Positives = 67/71 (94%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVND  KPKI+VEFKGERKTFAPEEIS
Sbjct: 59  MNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDGGKPKIRVEFKGERKTFAPEEIS 118

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 119 SMVLTKMKETA 129

Source: Anopheles albimanus

Species: Anopheles albimanus

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|423292561|gb|AFX84560.1| 70 kDa heat shock protein [Lygus hesperus]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 69/71 (97%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VVNDCSKPKIQV+FKGE+KTFAPEEIS
Sbjct: 58  MNPQNTVFDAKRLIGRKYDDPKIMEDMKHWPFKVVNDCSKPKIQVDFKGEKKTFAPEEIS 117

Query: 61  SMVLTKMKETA 71
           SMVLTKMKETA
Sbjct: 118 SMVLTKMKETA 128

Source: Lygus hesperus

Species: Lygus hesperus

Genus: Lygus

Family: Miridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
UNIPROTKB|Q9GSU4	643	Hsp70Ba "Major heat shock 70 k	0.959	0.110	0.830	7.3e-28
FB|FBgn0013277	641	Hsp70Ba "Heat-shock-protein-70	0.959	0.110	0.830	4.2e-27
FB|FBgn0013278	641	Hsp70Bb "Heat-shock-protein-70	0.959	0.110	0.830	4.2e-27
FB|FBgn0051354	641	Hsp70Bbb "Hsp70Bbb" [Drosophil	0.959	0.110	0.830	4.2e-27
FB|FBgn0013279	641	Hsp70Bc "Heat-shock-protein-70	0.959	0.110	0.830	4.2e-27
FB|FBgn0013275	642	Hsp70Aa "Heat-shock-protein-70	0.959	0.110	0.830	4.2e-27
FB|FBgn0013276	642	Hsp70Ab "Heat-shock-protein-70	0.959	0.110	0.830	4.2e-27
UNIPROTKB|P08106	634	P08106 "Heat shock 70 kDa prot	0.959	0.111	0.788	1.8e-26
UNIPROTKB|Q7SX63	634	HSP70 "Heat shock protein 70"	0.959	0.111	0.788	1.8e-26
FB|FBgn0001230	635	Hsp68 "Heat shock protein 68"	0.959	0.111	0.802	1.8e-26

UNIPROTKB|Q9GSU4 Hsp70Ba "Major heat shock 70 kDa protein Ba" [Drosophila simulans (taxid:7240)]

 Score = 319 (117.4 bits), Expect = 7.3e-28, P = 7.3e-28
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+DC KPKI VE+KGE K FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDCGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMKETA 71
             SMVL KMKETA
Sbjct:   118 SMVLAKMKETA 128

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0013277 Hsp70Ba "Heat-shock-protein-70Ba" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMKETA 71
             SMVLTKMKETA
Sbjct:   118 SMVLTKMKETA 128

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0013278 Hsp70Bb "Heat-shock-protein-70Bb" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMKETA 71
             SMVLTKMKETA
Sbjct:   118 SMVLTKMKETA 128

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0051354 Hsp70Bbb "Hsp70Bbb" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMKETA 71
             SMVLTKMKETA
Sbjct:   118 SMVLTKMKETA 128

GO:0009408 "response to heat" evidence=ISS;IMP

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0013279 Hsp70Bc "Heat-shock-protein-70Bc" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMKETA 71
             SMVLTKMKETA
Sbjct:   118 SMVLTKMKETA 128

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

GO:0031427 "response to methotrexate" evidence=IEP

FB|FBgn0013275 Hsp70Aa "Heat-shock-protein-70Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMKETA 71
             SMVLTKMKETA
Sbjct:   118 SMVLTKMKETA 128

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0013276 Hsp70Ab "Heat-shock-protein-70Ab" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D  KPKI VE+KGE K FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMKETA 71
             SMVLTKMKETA
Sbjct:   118 SMVLTKMKETA 128

GO:0009408 "response to heat" evidence=ISS;IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

UNIPROTKB|P08106 P08106 "Heat shock 70 kDa protein" [Gallus gallus (taxid:9031)]

 Score = 306 (112.8 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 56/71 (78%), Positives = 62/71 (87%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP NT+FDAKRLIGRK+DDP +Q DMKHWPF VVN+  KPK+QVE+KGE KTF PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKYDDPTVQSDMKHWPFRVVNEGGKPKVQVEYKGEMKTFFPEEIS 121

Query:    61 SMVLTKMKETA 71
             SMVLTKMKE A
Sbjct:   122 SMVLTKMKEIA 132

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IDA

GO:0009986 "cell surface" evidence=ISS

UNIPROTKB|Q7SX63 HSP70 "Heat shock protein 70" [Gallus gallus (taxid:9031)]

 Score = 306 (112.8 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 56/71 (78%), Positives = 62/71 (87%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNP NT+FDAKRLIGRK+DDP +Q DMKHWPF VVN+  KPK+QVE+KGE KTF PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKYDDPTVQSDMKHWPFRVVNEGGKPKVQVEYKGEMKTFFPEEIS 121

Query:    61 SMVLTKMKETA 71
             SMVLTKMKE A
Sbjct:   122 SMVLTKMKEIA 132

GO:0005524 "ATP binding" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0031662 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M" evidence=IEA

GO:0036128 "CatSper complex" evidence=IEA

GO:0051861 "glycolipid binding" evidence=IEA

GO:0070194 "synaptonemal complex disassembly" evidence=IEA

GO:0009986 "cell surface" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IDA

FB|FBgn0001230 Hsp68 "Heat shock protein 68" [Drosophila melanogaster (taxid:7227)]

 Score = 306 (112.8 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 57/71 (80%), Positives = 63/71 (88%)

Query:     1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
             MNPKN+VFDAKRLIGR+FDD KIQ+D+KHWPF V+ND  KPKI VEFKG  K F+PEEIS
Sbjct:    58 MNPKNSVFDAKRLIGRRFDDSKIQEDIKHWPFKVINDNGKPKISVEFKGANKCFSPEEIS 117

Query:    61 SMVLTKMKETA 71
             SMVLTKMKETA
Sbjct:   118 SMVLTKMKETA 128

GO:0009408 "response to heat" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0042594 "response to starvation" evidence=IMP

GO:0031427 "response to methotrexate" evidence=IEP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09446	HSP7A_CAEEL	No assigned EC number	0.7638	0.9594	0.1109	yes	N/A
O73885	HSP7C_CHICK	No assigned EC number	0.7887	0.9594	0.1099	yes	N/A
P82910	HSP70_DROME	No assigned EC number	0.8309	0.9594	0.1105	yes	N/A
P63017	HSP7C_MOUSE	No assigned EC number	0.7605	0.9594	0.1099	yes	N/A
Q5NVM9	HSP7C_PONAB	No assigned EC number	0.7464	0.9594	0.1099	yes	N/A
Q9BIS2	HSP73_DROME	No assigned EC number	0.8309	0.9594	0.1107	yes	N/A
Q8INI8	HSP72_DROME	No assigned EC number	0.8309	0.9594	0.1107	yes	N/A
Q9VG58	HSP74_DROME	No assigned EC number	0.8309	0.9594	0.1107	yes	N/A
P02825	HSP71_DROME	No assigned EC number	0.8309	0.9594	0.1105	yes	N/A
P19378	HSP7C_CRIGR	No assigned EC number	0.7605	0.9594	0.1099	yes	N/A
A2Q0Z1	HSP7C_HORSE	No assigned EC number	0.7605	0.9594	0.1099	yes	N/A
P63018	HSP7C_RAT	No assigned EC number	0.7605	0.9594	0.1099	yes	N/A
P41827	HSP74_ANOAL	No assigned EC number	0.9295	0.9594	0.1109	N/A	N/A
P41826	HSP72_ANOAL	No assigned EC number	0.9436	0.9594	0.1109	N/A	N/A
P41825	HSP71_ANOAL	No assigned EC number	0.9436	0.9594	0.1109	N/A	N/A
O59855	HSP72_SCHPO	No assigned EC number	0.7464	0.9594	0.1097	yes	N/A
P11142	HSP7C_HUMAN	No assigned EC number	0.7605	0.9594	0.1099	yes	N/A
P19120	HSP7C_BOVIN	No assigned EC number	0.7605	0.9594	0.1092	yes	N/A
Q9BIR7	HSP75_DROME	No assigned EC number	0.8309	0.9594	0.1107	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
cd10233	376	cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding	1e-46
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	5e-37
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	5e-37
pfam00012	598	pfam00012, HSP70, Hsp70 protein	6e-32
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	2e-24
cd11733	377	cd11733, HSPA9-like_NBD, Nucleotide-binding domain	6e-20
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	1e-18
PRK00290	627	PRK00290, dnaK, molecular chaperone DnaK; Provisio	3e-17
cd10234	376	cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d	2e-16
cd11734	373	cd11734, Ssq1_like_NBD, Nucleotide-binding domain	1e-15
TIGR02350	595	TIGR02350, prok_dnaK, chaperone protein DnaK	1e-15
PTZ00400	663	PTZ00400, PTZ00400, DnaK-type molecular chaperone;	2e-15
cd10238	375	cd10238, HSPA14-like_NBD, Nucleotide-binding domai	3e-14
cd10237	417	cd10237, HSPA13-like_NBD, Nucleotide-binding domai	7e-13
CHL00094	621	CHL00094, dnaK, heat shock protein 70	1e-12
PTZ00186	657	PTZ00186, PTZ00186, heat shock 70 kDa precursor pr	1e-12
cd11739	383	cd11739, HSPH1_NBD, Nucleotide-binding domain of H	2e-12
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	1e-10
PRK13410	668	PRK13410, PRK13410, molecular chaperone DnaK; Prov	2e-10
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	2e-10
cd11732	377	cd11732, HSP105-110_like_NBD, Nucleotide-binding d	1e-09
PRK13411	653	PRK13411, PRK13411, molecular chaperone DnaK; Prov	3e-09
cd11737	383	cd11737, HSPA4_NBD, Nucleotide-binding domain of H	9e-09
cd11738	383	cd11738, HSPA4L_NBD, Nucleotide-binding domain of	3e-08
cd10232	386	cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma	3e-07
cd10230	388	cd10230, HYOU1-like_NBD, Nucleotide-binding domain	8e-06
cd10236	355	cd10236, HscA_like_NBD, Nucleotide-binding domain	2e-05
TIGR01991	599	TIGR01991, HscA, Fe-S protein assembly chaperone H	4e-05
PRK05183	616	PRK05183, hscA, chaperone protein HscA; Provisiona	2e-04
cd10235	339	cd10235, HscC_like_NBD, Nucleotide-binding domain	0.003

>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins

 Score =  151 bits (383), Expect = 1e-46
 Identities = 56/71 (78%), Positives = 58/71 (81%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN   KP I VE+KGE KTF PEEIS
Sbjct: 56  MNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEIS 115

Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 116 SMVLTKMKEIA 126

This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score =  129 bits (326), Expect = 5e-37
 Identities = 50/72 (69%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGERKTFAPEEI 59
            NP+NTVFDAKRLIGRKFDD  +Q DMKHWPF V      KP I+V ++GE+KTF PEEI
Sbjct: 61  RNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEI 120

Query: 60  SSMVLTKMKETA 71
           SSMVL KMKE A
Sbjct: 121 SSMVLQKMKEIA 132

Length = 653

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score =  126 bits (318), Expect = 5e-37
 Identities = 47/71 (66%), Positives = 59/71 (83%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NT+FD KRLIGRKFDD ++Q+D+K  P+ VVN   KP I+V+ KGE+KTF+PEEIS
Sbjct: 58  SNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEIS 117

Query: 61  SMVLTKMKETA 71
           +MVLTKMKE A
Sbjct: 118 AMVLTKMKEIA 128

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score =  115 bits (289), Expect = 6e-32
 Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 3/72 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGERKTFAPEEI 59
            NPKNTVF  KRLIGRKF DP +Q+D+KH P+ VV   +    ++V + GE  TF PE+I
Sbjct: 56  TNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPEQI 113

Query: 60  SSMVLTKMKETA 71
           S+MVL K+KETA
Sbjct: 114 SAMVLQKLKETA 125

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score = 93.0 bits (232), Expect = 2e-24
 Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKPKIQVEFKGERKTFAPEEI 59
            N KNTV + KRLIGRKFDDP++Q+++K  PF  V     K  I+V + GE K F+PE++
Sbjct: 57  SNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQV 116

Query: 60  SSMVLTKMKETA 71
            +M+LTK+KE A
Sbjct: 117 LAMLLTKLKEIA 128

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins

 Score = 80.5 bits (199), Expect = 6e-20
 Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP+NT++  KRLIGR+FDDP++Q+D+K+ P+ +V   S     VE  G  K ++P +I +
Sbjct: 61  NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG--KKYSPSQIGA 117

Query: 62  MVLTKMKETA 71
            VL KMKETA
Sbjct: 118 FVLMKMKETA 127

This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score = 76.9 bits (190), Expect = 1e-18
 Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NTV D KRLIGRKFDDP +Q   K     +  D   P I V  +   K ++PEE+S
Sbjct: 57  DNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGGKKYSPEEVS 112

Query: 61  SMVLTKMKETA 71
           +++L K+KE A
Sbjct: 113 ALILKKLKEDA 123

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional

 Score = 73.6 bits (182), Expect = 3e-17
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NT+F  KRL+GR+  D ++Q+D+K  P+ +V         VE  G  K + P+EIS
Sbjct: 60  TNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG--KKYTPQEIS 114

Query: 61  SMVLTKMKETA 71
           +M+L K+K+ A
Sbjct: 115 AMILQKLKKDA 125

Length = 627

>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins

 Score = 71.1 bits (175), Expect = 2e-16
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NT+F  KR +GRKFD+ + ++ +   P+ VV        +VE     K + P+EIS
Sbjct: 60  TNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNGKDYTPQEIS 115

Query: 61  SMVLTKMKETA 71
           +M+L K+KE A
Sbjct: 116 AMILQKLKEDA 126

This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376

>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins

 Score = 68.7 bits (168), Expect = 1e-15
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           ++P+NT F  KRLIGR+F D ++Q+ MK   + +V         +   G  K ++P +I+
Sbjct: 59  LHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG--KKYSPSQIA 115

Query: 61  SMVLTKMKETA 71
           S VL K+K+TA
Sbjct: 116 SFVLKKLKKTA 126

Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373

>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK

 Score = 68.9 bits (169), Expect = 1e-15
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP+NT++  KR +GR+FD  ++ ++ K  P+ VV D       V  K + K + P+EIS+
Sbjct: 59  NPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDGKEYTPQEISA 112

Query: 62  MVLTKMKETA 71
           M+L K+K+ A
Sbjct: 113 MILQKLKKDA 122

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595

>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional

 Score = 68.3 bits (167), Expect = 2e-15
 Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP+NTVF  KRLIGR++D+   +++ K  P+ +V   S     +E +G++  ++P +I +
Sbjct: 100 NPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK--YSPSQIGA 156

Query: 62  MVLTKMKETA 71
            VL KMKETA
Sbjct: 157 FVLEKMKETA 166

Length = 663

>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins

 Score = 64.7 bits (158), Expect = 3e-14
 Identities = 19/70 (27%), Positives = 39/70 (55%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           N  NT+   K+++GR + DP  Q++       ++    +PK ++  + + K  +P+E++ 
Sbjct: 58  NAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAK 117

Query: 62  MVLTKMKETA 71
           ++  KMKE A
Sbjct: 118 LIFKKMKEIA 127

Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375

>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins

 Score = 60.9 bits (148), Expect = 7e-13
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF---KGERKTFAPEE 58
           NP+NT++DAKR IG+ F   +++ +   + F V  +         F     E KT  PEE
Sbjct: 80  NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSVLTNETKTVTPEE 137

Query: 59  ISSMVLTKMKETA 71
           I S ++ K+++ A
Sbjct: 138 IGSRLILKLRKMA 150

Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417

>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70

 Score = 60.5 bits (147), Expect = 1e-12
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NT +  KR IGRKF +  I ++ K   + V  D S   I++E     K F+PEEIS
Sbjct: 60  INPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALNKDFSPEEIS 116

Query: 61  SMVLTKMKETA 71
           + VL K+ E A
Sbjct: 117 AQVLRKLVEDA 127

Length = 621

>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional

 Score = 60.5 bits (146), Expect = 1e-12
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP++T +  KRLIGR+F+D  IQ+D+K+ P+ +V         V+  G  K ++P +I +
Sbjct: 85  NPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DGNGKQYSPSQIGA 142

Query: 62  MVLTKMKETA 71
            VL KMKETA
Sbjct: 143 FVLEKMKETA 152

Length = 657

>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1

 Score = 60.0 bits (145), Expect = 2e-12
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKGERKTFAPEEI 59
           +  NTV + KR  GR F+DP +Q++ ++  + +V   +     ++V + GE   F+ E+I
Sbjct: 58  HANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMGEEHLFSVEQI 116

Query: 60  SSMVLTKMKETA 71
           ++M+LTK+KETA
Sbjct: 117 TAMLLTKLKETA 128

Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 22/71 (30%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NT+F  KR IGR                      +  KI VE  G  K + PEEIS
Sbjct: 64  DNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--KKYTPEEIS 101

Query: 61  SMVLTKMKETA 71
           +M+LTK+KE A
Sbjct: 102 AMILTKLKEDA 112

Length = 579

>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NT ++ KR IGR++D+  +  + K  P+T+  +  +  ++++     + FAPEE+S
Sbjct: 60  LNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLEREFAPEELS 116

Query: 61  SMVLTKMKETA 71
           +M+L K+ + A
Sbjct: 117 AMILRKLADDA 127

Length = 668

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NT F  KR IGRK  +  + ++ K   + VV D     ++++     K FA EEIS
Sbjct: 97  VNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIGKQFAAEEIS 153

Query: 61  SMVLTKMKETA 71
           + VL K+ + A
Sbjct: 154 AQVLRKLVDDA 164

Length = 673

>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins

 Score = 51.6 bits (123), Expect = 1e-09
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           N KNTV + KR+IG  +  P  +Q+ KH     V  D  K   +V F GE+  F+  +++
Sbjct: 56  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 115

Query: 61  SMVLTKMKETA 71
           +M + K+K+T 
Sbjct: 116 AMFIDKVKDTV 126

This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377

>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 11/73 (15%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFKGERKTFAPEE 58
           N +NTV+  KR IGR++DD   +++    P+T    C K +   + V+ +G  + + P+E
Sbjct: 61  NAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIRG--RNYTPQE 112

Query: 59  ISSMVLTKMKETA 71
           IS+M+L K+K+ A
Sbjct: 113 ISAMILQKLKQDA 125

Length = 653

>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4

 Score = 49.6 bits (118), Expect = 9e-09
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEIS 60
           N KNTV   KR  GR F DP +Q +     + +V        I+V +  E + F  E+++
Sbjct: 58  NAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVT 117

Query: 61  SMVLTKMKETA 71
           +M+LTK+KETA
Sbjct: 118 AMLLTKLKETA 128

Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEIS 60
           N +NT+   K+L GR FDDP +Q +    P+ +         ++V +  E + FA E+++
Sbjct: 58  NVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVT 117

Query: 61  SMVLTKMKETA 71
            M+L K+KET+
Sbjct: 118 GMLLAKLKETS 128

Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPKIQVEFKGERKTFAPEEI 59
           N KNT+ + + L+G+ F +  +         P  V++     + + E   +       E+
Sbjct: 58  NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEV 117

Query: 60  SSMVLTKMKETA 71
           +   L ++KE A
Sbjct: 118 TVRFLRRLKEAA 129

Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386

>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins

 Score = 41.0 bits (97), Expect = 8e-06
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGERKTFAPEEIS 60
            P+      K L+G+  DDP +       P    V D S+  +  +     + ++ EE+ 
Sbjct: 57  FPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG-EEYSVEELV 115

Query: 61  SMVLTKMKETA 71
           +M+L   K+ A
Sbjct: 116 AMILNYAKKLA 126

This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388

>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 3   PKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSM 62
           PKNT+   KRL+G+  +D  I++   + P     +       + F  ++ T  P E+S+ 
Sbjct: 59  PKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFHTQQGTVTPVEVSAE 112

Query: 63  VLTKMKETA 71
           +L  +KE A
Sbjct: 113 ILKALKERA 121

Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355

>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 3   PKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSM 62
           PKNT+   KRL+GR  +D K        P+  V+    P   V  +  + T  P E+S+ 
Sbjct: 59  PKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQGTVTPVEVSAE 112

Query: 63  VLTKMKETA 71
           +L K+K+ A
Sbjct: 113 ILKKLKQRA 121

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599

>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 3   PKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGERKTFAPEEISS 61
           PKNT+   KR +GR   D  IQQ   H P+  V ++   P I+    G  K+  P E+S+
Sbjct: 78  PKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL-KS--PVEVSA 131

Query: 62  MVLTKMKETA 71
            +L  +++ A
Sbjct: 132 EILKALRQRA 141

Length = 616

>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins

 Score = 33.6 bits (78), Expect = 0.003
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 46 EFKGERKTFAPEEISSMVLTKMKETA 71
          +++  ++ F  EE+SS+VL  +KE A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDA 99

This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG0100|consensus	663		99.92
KOG0103|consensus	727		99.75
KOG0102|consensus	640		99.74
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.71
KOG0101|consensus	620		99.68
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.66
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.61
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.58
PRK13410	668	molecular chaperone DnaK; Provisional	99.54
PRK13411	653	molecular chaperone DnaK; Provisional	99.53
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.5
PLN03184	673	chloroplast Hsp70; Provisional	99.49
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.45
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.41
CHL00094	621	dnaK heat shock protein 70	99.4
PRK05183	616	hscA chaperone protein HscA; Provisional	99.37
KOG0104|consensus	902		99.08
PRK01433	595	hscA chaperone protein HscA; Provisional	98.84
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	98.73
PRK11678	450	putative chaperone; Provisional	96.57
PF03484	70	B5: tRNA synthetase B5 domain; InterPro: IPR005147	86.18
cd02426	128	Pol_gamma_b_Cterm C-terminal domain of mitochondri	82.76

>KOG0100|consensus

Probab=99.92  E-value=1.9e-25  Score=149.88  Aligned_cols=74  Identities=64%  Similarity=0.930  Sum_probs=70.8

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEEC-CeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK-GERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~-~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.|||++.||||||.|+|+.||.+.++|||++++.+|++.++|... |+.+.|+||||+||||.+||++||+|
T Consensus        93 ~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEay  167 (663)
T KOG0100|consen   93 SNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAY  167 (663)
T ss_pred             cCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999986 56899999999999999999999987

>KOG0103|consensus

Probab=99.75  E-value=6.4e-19  Score=123.01  Aligned_cols=73  Identities=48%  Similarity=0.730  Sum_probs=70.3

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      +|++||+.++|||+||.|+||.+|.+.+++|+.++. .||.+++.+.|.|+.+.|||+||.||+|.+||++|++
T Consensus        58 ~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~  131 (727)
T KOG0103|consen   58 TNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEK  131 (727)
T ss_pred             ecccccchhhhhhhccccCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999988 8999999999999999999999999999999999975

>KOG0102|consensus

Probab=99.74  E-value=3e-18  Score=117.60  Aligned_cols=70  Identities=44%  Similarity=0.777  Sum_probs=66.0

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      .||.|||+..||||||+|+||++|.+.+.+||+++. .||+.|++.    ..+.|+|.|+.+++|.+||+.|++|
T Consensus        85 ~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~y  155 (640)
T KOG0102|consen   85 TNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAY  155 (640)
T ss_pred             cCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999998 899999988    3678999999999999999999986

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.71  E-value=2.5e-17  Score=115.86  Aligned_cols=74  Identities=68%  Similarity=1.029  Sum_probs=68.3

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||+||++++|||||+.++|+.++...+.|||+++. .+|.+.+.+.+.++.+.|+|+||+|++|++||+.|+.|
T Consensus        61 ~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~  135 (653)
T PTZ00009         61 RNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAY  135 (653)
T ss_pred             hCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999887 78888999988877789999999999999999999864

>KOG0101|consensus

Probab=99.68  E-value=1.5e-17  Score=115.82  Aligned_cols=74  Identities=70%  Similarity=1.067  Sum_probs=69.8

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++||||||.++||.++.++++|||++.. .++.+.+.+.++++.+.|+|+++++++|.+||+.|++|
T Consensus        64 ~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~  138 (620)
T KOG0101|consen   64 RNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAY  138 (620)
T ss_pred             cCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHH
Confidence            589999999999999999999999999999999986 56789999999998999999999999999999999976

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.66  E-value=2.3e-16  Score=111.21  Aligned_cols=70  Identities=40%  Similarity=0.683  Sum_probs=62.9

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++|||||++++|+.++...+.+||+++. ++|.+.+.+.    .+.|+|+||+|++|++||+.|+.|
T Consensus        99 ~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~speel~a~iL~~lk~~ae~~  169 (663)
T PTZ00400         99 TNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQ----GKKYSPSQIGAFVLEKMKETAESY  169 (663)
T ss_pred             hCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999987 7788887763    468999999999999999999864

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.61  E-value=1.1e-15  Score=107.89  Aligned_cols=71  Identities=41%  Similarity=0.684  Sum_probs=62.4

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++||+||++++|+.++...+.|||+++. .+|.+.+...   ..+.|+|+||+|++|++||+.|++|
T Consensus        84 ~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~~~---~~~~~speeisa~iL~~Lk~~Ae~~  155 (657)
T PTZ00186         84 TNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDG---NGKQYSPSQIGAFVLEKMKETAENF  155 (657)
T ss_pred             hCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEEeC---CCeEEcHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999987 6777666542   3578999999999999999999864

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.58  E-value=6.8e-15  Score=101.79  Aligned_cols=73  Identities=48%  Similarity=0.850  Sum_probs=68.1

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      ++|++|++++|||||+.++++.++.+.+.+||+++. ++|.+.+++.+.|..+.|+|+||++++|++|++.|+.
T Consensus        56 ~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~  129 (602)
T PF00012_consen   56 RNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEK  129 (602)
T ss_dssp             TSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchh
Confidence            479999999999999999999999999999999987 6899999999888788999999999999999999875

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.54  E-value=1.2e-14  Score=102.69  Aligned_cols=70  Identities=34%  Similarity=0.677  Sum_probs=59.7

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||+||++++|||||++++|  ++.+.+++||++.. ++|.+.+.+..  ..+.|+|+||+|++|++|++.|+.|
T Consensus        60 ~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g~~~i~~~~--~~~~~speel~a~iL~~lk~~ae~~  130 (668)
T PRK13410         60 LNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPR--LEREFAPEELSAMILRKLADDASRY  130 (668)
T ss_pred             hCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999977  56677889999987 67887777643  3578999999999999999999764

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.53  E-value=1.5e-14  Score=101.93  Aligned_cols=68  Identities=35%  Similarity=0.653  Sum_probs=57.9

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++|||||++++|+.  .+.+++||+++. .+|.+.+.+.    .+.|+|+||+|++|++||+.|+.+
T Consensus        60 ~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~~~~~i~----~~~~~peei~a~iL~~lk~~ae~~  128 (653)
T PRK13411         60 TNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDTVNVQIR----GRNYTPQEISAMILQKLKQDAEAY  128 (653)
T ss_pred             hCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999964  456889999887 6777777762    468999999999999999999864

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.50  E-value=4.4e-14  Score=99.10  Aligned_cols=68  Identities=40%  Similarity=0.732  Sum_probs=58.9

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++|||||+.  ++.++...+++||+++. .+|...+.+  .  .+.|+|+||+|++|++|++.|+.+
T Consensus        60 ~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~~peel~a~iL~~lk~~ae~~  128 (627)
T PRK00290         60 TNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEI--D--GKKYTPQEISAMILQKLKKDAEDY  128 (627)
T ss_pred             hCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceEEEE--C--CEEEcHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999998  67788888999999987 677777765  2  468999999999999999999763

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.49  E-value=5.4e-14  Score=99.49  Aligned_cols=70  Identities=37%  Similarity=0.573  Sum_probs=59.7

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++|||||++++|  ++...+.+||+++. ++|.+.+.+...  .+.|+|+||+|++|++|++.|+.+
T Consensus        97 ~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ae~~  167 (673)
T PLN03184         97 VNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKF  167 (673)
T ss_pred             hCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999987  56677889999987 678887776543  358999999999999999998753

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.45  E-value=1.5e-13  Score=95.80  Aligned_cols=68  Identities=38%  Similarity=0.763  Sum_probs=58.2

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++|||||+.+++  ++...+++||++..++|.+.+.+.    .+.|+|+||+|++|++|++.|+.+
T Consensus        58 ~~p~~~i~~~Kr~iG~~~~~--~~~~~~~~~~~v~~~~~~~~~~v~----~~~~~peel~a~~L~~l~~~a~~~  125 (595)
T TIGR02350        58 TNPENTIYSIKRFMGRRFDE--VTEEAKRVPYKVVGDGGDVRVKVD----GKEYTPQEISAMILQKLKKDAEAY  125 (595)
T ss_pred             hCchhhhHHHHHHhCCCchH--HHHHhhcCCeeEEcCCCceEEEEC----CEEecHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999944  777788999996557888888773    468999999999999999999763

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.41  E-value=3.3e-13  Score=94.49  Aligned_cols=67  Identities=31%  Similarity=0.487  Sum_probs=56.2

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++|||||++++|+.  . .+.+||+++. .+|.+.+.+..    ..++|+||+|++|++|++.|+.+
T Consensus        57 ~~p~~ti~~~Kr~iG~~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~  124 (599)
T TIGR01991        57 EDPKNTISSVKRLMGRSIEDIK--T-FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEES  124 (599)
T ss_pred             hChhhhHHHHHHHhCCCccchh--h-cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999998853  3 5778999987 67888777642    37999999999999999999753

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>CHL00094 dnaK heat shock protein 70

Probab=99.40  E-value=5.1e-13  Score=93.77  Aligned_cols=69  Identities=41%  Similarity=0.631  Sum_probs=58.5

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      .||.||++++||+||+.++|  ++...+.+||+++. .+|.+.+.+...  .+.|+|+||++++|++|++.|+.
T Consensus        60 ~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~i~~~~~~~--~~~~s~eei~a~iL~~l~~~ae~  129 (621)
T CHL00094         60 INPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPAL--NKDFSPEEISAQVLRKLVEDASK  129 (621)
T ss_pred             hCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCCEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999976  55666789999987 678877776543  46899999999999999999875

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.37  E-value=8.9e-13  Score=92.59  Aligned_cols=68  Identities=32%  Similarity=0.545  Sum_probs=57.3

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++|||||+.++|  ++.....+||.+.. .+|.+.+.+.    ...++|+||+|++|++|++.|+.+
T Consensus        76 ~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~p~ei~a~iL~~lk~~ae~~  144 (616)
T PRK05183         76 QDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA----QGLKSPVEVSAEILKALRQRAEET  144 (616)
T ss_pred             hCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEec----CCeEcHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999987  45556789999887 6888888763    237899999999999999999763

>KOG0104|consensus

Probab=99.08  E-value=1.9e-10  Score=81.98  Aligned_cols=71  Identities=28%  Similarity=0.456  Sum_probs=59.6

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCe-EEEeC--CCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVND--CSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~-~i~~~--~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      ++|++++..+|.|+|++.+||.++.+.+++|| .++.+  .+.+.|.+  .+ ...||+|||+||+|.+.+..||.|
T Consensus        80 r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i--~d-~~~ysvEellAMil~~a~~~ae~~  153 (902)
T KOG0104|consen   80 RFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKI--SD-QEEYSVEELLAMILQYAKSLAEEY  153 (902)
T ss_pred             cCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEe--CC-ccccCHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999998885 57764  35555555  33 578999999999999999999865

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=98.84  E-value=3.2e-09  Score=74.75  Aligned_cols=65  Identities=20%  Similarity=0.249  Sum_probs=41.7

Q ss_pred             chhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           6 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         6 ti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      |++++|||||+.++|................ .++...+.  ..  .+.|+|+||+|++|++||+.|+.+
T Consensus        71 ti~~~KrliG~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~--~~--~~~~speei~a~iL~~lk~~ae~~  136 (595)
T PRK01433         71 GLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLN--FA--NKQLRIPEIAAEIFIYLKNQAEEQ  136 (595)
T ss_pred             hHHHHHHHhCCCchhhccchhhHhhhhheeecCCCeeEEE--EC--CEEEcHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999873211110001111122 23333343  33  468999999999999999999864

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1.5e-08  Score=71.18  Aligned_cols=51  Identities=47%  Similarity=0.663  Sum_probs=40.5

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCc-ceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSK-PKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~-~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++||+||+.                   .++. ..+.+  .  .+.|+|+||+|++|.+||+.|+++
T Consensus        64 ~~p~~t~~~~kr~~G~~-------------------~~~~~~~~~~--~--~~~~~~eeisa~~L~~lk~~ae~~  115 (579)
T COG0443          64 DNPENTIFSIKRKIGRG-------------------SNGLKISVEV--D--GKKYTPEEISAMILTKLKEDAEAY  115 (579)
T ss_pred             hCCcceEEEEehhcCCC-------------------CCCCcceeee--C--CeeeCHHHHHHHHHHHHHHHHHHh
Confidence            58999999999999997                   1121 23333  2  378999999999999999999875

>PRK11678 putative chaperone; Provisional

Probab=96.57  E-value=0.0025  Score=44.09  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=17.8

Q ss_pred             chhhhHHHHHHHHHHHHhcC
Q psy6083          55 APEEISSMVLTKMKETALYQ   74 (74)
Q Consensus        55 speev~a~iL~~lk~~ae~~   74 (74)
                      .||+|++++|++||+.|+.+
T Consensus       125 ~~e~l~a~iL~~lk~~ae~~  144 (450)
T PRK11678        125 LFEDLVCAMMLHIKQQAEAQ  144 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999863

>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits

Probab=86.18  E-value=0.97  Score=23.39  Aligned_cols=57  Identities=16%  Similarity=0.175  Sum_probs=35.2

Q ss_pred             hhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHH
Q psy6083           7 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVL   64 (74)
Q Consensus         7 i~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL   64 (74)
                      ...+++++|..++...+...++++-|++.. .++...+.+..- ..=...+++|+-.++
T Consensus         8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~-R~Di~~~~DliEEia   65 (70)
T PF03484_consen    8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSY-RFDIEHEEDLIEEIA   65 (70)
T ss_dssp             HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETT-STT-SSHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCC-cCCcCcccHHHHHHH
Confidence            456789999999988999999999999987 555555555421 011345666655554

This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....

>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity

Probab=82.76  E-value=2.4  Score=24.56  Aligned_cols=43  Identities=12%  Similarity=0.138  Sum_probs=27.1

Q ss_pred             hhcccCCeEEE-e----CCCcceEEEEECCeeEEEchhhhHHHHHHHH
Q psy6083          25 QDMKHWPFTVV-N----DCSKPKIQVEFKGERKTFAPEEISSMVLTKM   67 (74)
Q Consensus        25 ~~~~~~p~~i~-~----~~g~~~~~v~~~~~~~~~speev~a~iL~~l   67 (74)
                      .+..-+||.|+ .    .+|.+.+.-...++...++.+++...+...+
T Consensus        79 ~dliGiP~~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~  126 (128)
T cd02426          79 YDEMGVLFTLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYI  126 (128)
T ss_pred             hhhcCCCEEEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHh
Confidence            34567899975 2    2555544444445567788888877665543

Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
1yuw_A	554	Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214		9e-30
3c7n_B	554	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		1e-29
2v7z_A	543	Crystal Structure Of The 70-Kda Heat Shock Cognate		1e-29
1qqo_A	378	E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		3e-29
1qqm_A	378	D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		3e-29
3cqx_A	386	Chaperone Complex Length = 386		4e-29
2qwn_A	394	Crystal Structure Of Disulfide-Bond-Crosslinked Com		5e-29
2bup_A	381	T13g Mutant Of The Atpase Fragment Of Bovine Hsc70		5e-29
3fzf_A	381	Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP		5e-29
2qw9_B	394	Crystal Structure Of Bovine Hsc70 (1-394aa)in The A		6e-29
1nga_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-29
1hx1_A	400	Crystal Structure Of A Bag Domain In Complex With T		7e-29
1qqn_A	378	D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		7e-29
1ngg_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-29
1atr_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		7e-29
1ngc_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-29
1nge_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-29
1bup_A	386	T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot		7e-29
1ngd_A	386	Structural Basis Of The 70-kilodalton Heat Shock Co		7e-29
1ngf_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-29
1ngh_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-29
1hpm_A	386	How Potassium Affects The Activity Of The Molecular		7e-29
1ats_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		8e-29
1ngb_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-29
1ba0_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		9e-29
1ba1_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		1e-28
3jxu_A	409	Crystal Structure Of The Human 70kda Heat Shock Pro		1e-28
1s3x_A	382	The Crystal Structure Of The Human Hsp70 Atpase Dom		1e-28
3d2f_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		1e-28
3a8y_A	392	Crystal Structure Of The Complex Between The Bag5 B		1e-28
1hjo_A	380	Atpase Domain Of Human Heat Shock 70kda Protein 1 L		1e-28
2e8a_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		1e-28
2e88_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		1e-28
1kaz_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71e		2e-28
1kay_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71a		2e-28
3i33_A	404	Crystal Structure Of The Human 70kda Heat Shock Pro		3e-28
1kax_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71m		3e-28
3gdq_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		3e-27
3fe1_A	403	Crystal Structure Of The Human 70kda Heat Shock Pro		1e-26
3d2e_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70,		2e-26
4fsv_A	387	Crystal Structure Of A Heat Shock 70kda Protein 2 (		2e-25
3gl1_A	387	Crystal Structure Of Atpase Domain Of Ssb1 Chaperon		1e-22
3iuc_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		4e-22
3ldl_A	384	Crystal Structure Of Human Grp78 (70kda Heat Shock		4e-22
3kvg_A	400	Crystal Structure Of The N-Terminal Domain Of Hsp70		1e-20
3qfu_A	394	Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE		4e-20
3qfp_A	390	Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D		4e-20
2kho_A	605	Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP		2e-10
1dkg_D	383	Crystal Structure Of The Nucleotide Exchange Factor		4e-10
4b9q_A	605	Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L		6e-09
3d2f_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		5e-07
2qxl_A	658	Crystal Structure Analysis Of Sse1, A Yeast Hsp110		6e-07
3c7n_A	668	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		6e-07
3d2e_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70,		1e-05

>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554

Iteration: 1
 Score =  124 bits (312), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 118 SMVLTKMKEIA 128

>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  122 bits (307), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND   PK+QVE+KGE K+F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGAPKVQVEYKGETKSFYPEEVS 117
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 118 SMVLTKMKEIA 128

>pdb|3CQX|A Chain A, Chaperone Complex Length = 386

Iteration: 1
 Score =  122 bits (306), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 66  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 125
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 126 SMVLTKMKEIA 136

>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394

Iteration: 1
 Score =  122 bits (305), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 80  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 139
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 140 SMVLTKMKEIA 150

>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 59/71 (83%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR FDD  +Q DMKHWPF VVND   PK+QVE+KGE K+F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRAFDDAVVQSDMKHWPFMVVNDAGAPKVQVEYKGETKSFYPEEVS 117
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 118 SMVLTKMKEIA 128

>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score =  121 bits (304), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  121 bits (304), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386

Iteration: 1
 Score =  121 bits (304), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGRKF DP +Q DMKHWPF V+ND  KPK+QV +KGE K F PEEIS
Sbjct: 83  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 142
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 143 SMVLTKMKEIA 153

>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGRKF DP +Q DMKHWPF V+ND  KPK+QV +KGE K F PEEIS
Sbjct: 61  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGRKF DP +Q DMKHWPF V+ND  KPK+QV +KGE K F PEEIS
Sbjct: 61  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGRKF DP +Q DMKHWPF V+ND  KPK+QV +KGE K F PEEIS
Sbjct: 65  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 124
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 125 SMVLTKMKEIA 135

>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGRKF DP +Q DMKHWPF V+ND  KPK+QV +KGE K F PEEIS
Sbjct: 59  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 118
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 119 SMVLTKMKEIA 129

>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGRKF DP +Q DMKHWPF V+ND  KPK+QV +KGE K F PEEIS
Sbjct: 64  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 123
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 124 SMVLTKMKEIA 134

>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGRKF DP +Q DMKHWPF V+ND  KPK+QV +KGE K F PEEIS
Sbjct: 64  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 123
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 124 SMVLTKMKEIA 134

>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/71 (74%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDA+RLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAERLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381

Iteration: 1
 Score =  120 bits (301), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/71 (74%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDA RLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAARLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/71 (76%), Positives = 61/71 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NT+FDAKRLIGRKF+D  +Q DMKHWPF VV++  KPK+QVE+KGE KTF PEEIS
Sbjct: 80  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 140 SMVLTKMKEIA 150

>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/71 (74%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDA RLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAMRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/71 (73%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP+NTVFDAKRLIGRKF+DP +Q DMK WPF V+N+  KPK+ V +KGE K F PEEIS
Sbjct: 85  MNPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEIS 144
Query: 61  SMVLTKMKETA 71
           SMVLTK+KETA
Sbjct: 145 SMVLTKLKETA 155

>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403

Iteration: 1
 Score =  114 bits (285), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP NTVFDAKRLIGRKF D  +Q DMKHWPF VV++  KPK++V ++GE KTF PEEIS
Sbjct: 81  LNPHNTVFDAKRLIGRKFADTTVQSDMKHWPFRVVSEGGKPKVRVCYRGEDKTFYPEEIS 140
Query: 61  SMVLTKMKETA 71
           SMVL+KMKETA
Sbjct: 141 SMVLSKMKETA 151

>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/71 (71%), Positives = 57/71 (80%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGRKF DP +Q D KHWPF V+ND  KPK+QV +KGE K F PEEIS
Sbjct: 61  LNPQNTVFDAKRLIGRKFGDPVVQSDXKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 120
Query: 61  SMVLTKMKETA 71
           S VLTK KE A
Sbjct: 121 SXVLTKXKEIA 131

>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387

Iteration: 1
 Score =  110 bits (274), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 57/70 (81%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP NT+FDAKRLIGRKF+D  +Q D KHWPF VV++  KPK+QVE+KGE KTF PEEISS
Sbjct: 63  NPTNTIFDAKRLIGRKFEDATVQSDXKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISS 122
Query: 62  MVLTKMKETA 71
            VLTK KE A
Sbjct: 123 XVLTKXKEIA 132

>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387

Iteration: 1
 Score =  100 bits (250), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 58/71 (81%)
Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           +NP+NTVFDAKRLIGR+FDD  +Q+DMK WPF V++    P I+V++  E KTF+P+EIS
Sbjct: 66  LNPRNTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGNPVIEVQYLEETKTFSPQEIS 125
Query: 61  SMVLTKMKETA 71
           +MVLTKMKE A
Sbjct: 126 AMVLTKMKEIA 136

>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF-KGERKTFAPEEIS 60
           NP+NTVFDAKRLIGR ++DP +QQD+K  PF VV   +KP IQV+   G+ KTFAPEEIS
Sbjct: 85  NPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEIS 144
Query: 61  SMVLTKMKETA 71
           +MVLTKMKETA
Sbjct: 145 AMVLTKMKETA 155

>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF-KGERKTFAPEEIS 60
           NP+NTVFDAKRLIGR ++DP +QQD+K  PF VV   +KP IQV+   G+ KTFAPEEIS
Sbjct: 64  NPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEIS 123
Query: 61  SMVLTKMKETA 71
           +MVLTKMKETA
Sbjct: 124 AMVLTKMKETA 134

>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGERKTFAPEEIS 60
           NP+NTVFDAKRLIGRKFDD  +Q DM HWPF VV     KP I V + GE+K F  EEIS
Sbjct: 77  NPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEIS 136
Query: 61  SMVLTKMKETA 71
           +MVL KMKE +
Sbjct: 137 AMVLQKMKEIS 147

>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 53/70 (75%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP+NT+FD KRLIG K++D  +Q+D+KH PF VVN   KP ++V  KGE+K F PEEIS 
Sbjct: 72  NPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISG 131
Query: 62  MVLTKMKETA 71
           M+L KMK+ A
Sbjct: 132 MILGKMKQIA 141

>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP+NT+F  KRLIGR+F D ++Q+D+   PF ++         VE KG++   AP +IS+
Sbjct: 61  NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA-ADNGDAWVEVKGQK--MAPPQISA 117
Query: 62  MVLTKMKETA 71
            VL KMK+TA
Sbjct: 118 EVLKKMKKTA 127

>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP+NT+F  KRLIGR+F D ++Q+D+   PF ++         VE KG++   AP +IS+
Sbjct: 61  NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA-ADNGDAWVEVKGQK--MAPPQISA 117
Query: 62  MVLTKMKETA 71
            VL KMK+TA
Sbjct: 118 EVLKKMKKTA 127

>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISS 61
           NP+NT+F  KRLIGR+F D ++Q+D+   PF ++         VE KG++   AP +IS+
Sbjct: 61  NPQNTLFAIKRLIGRRFQDEEVQRDVSIXPFKIIA-ADNGDAWVEVKGQKX--APPQISA 117
Query: 62  MVLTKMKETA 71
            VL K K+TA
Sbjct: 118 EVLKKXKKTA 127

>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEIS 60
           N KNTV + KR+IG  +  P  +Q+ KH+   +V  D  K   +V F GE+  F+  +++
Sbjct: 60  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 119
Query: 61  SMVLTKMKET 70
           +M + K+K+T
Sbjct: 120 AMFIDKVKDT 129

>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEIS 60
           N KNTV + KR+IG  +  P  +Q+ KH+   +V  D  K   +V F GE+  F+  +++
Sbjct: 59  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 118
Query: 61  SMVLTKMKET 70
           +M + K+K+T
Sbjct: 119 AMFIDKVKDT 128

>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEIS 60
           N KNTV + KR+IG  +  P  +Q+ KH+   +V  D  K   +V F GE+  F+  +++
Sbjct: 62  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 121
Query: 61  SMVLTKMKET 70
           +M + K+K+T
Sbjct: 122 AMFIDKVKDT 131

>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 2   NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEIS 60
           N KNTV + KR+IG  +  P  +Q+ KH+   +V  D  K   +V F GE+  F+  +++
Sbjct: 60  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 119
Query: 61  SMVLTKMKET 70
           +  + K+K+T
Sbjct: 120 AXFIDKVKDT 129
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	5e-51
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	7e-51
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	5e-49
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	3e-43
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	3e-24
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	2e-22
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	3e-09

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404

 Score =  162 bits (413), Expect = 5e-51
 Identities = 54/71 (76%), Positives = 61/71 (85%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NT+FDAKRLIGRKF+D  +Q DMKHWPF VV++  KPK+QVE+KGE KTF PEEIS
Sbjct: 80  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139

Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 140 SMVLTKMKEIA 150

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554

 Score =  160 bits (408), Expect = 5e-49
 Identities = 54/71 (76%), Positives = 61/71 (85%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120

Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 121 SMVLTKMKEIA 131

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675

 Score =  146 bits (370), Expect = 3e-43
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEI 59
            N KNTV + KR+IG  +  P  +Q+ KH+   +V  D  K   +V F GE+  F+  ++
Sbjct: 59  SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118

Query: 60  SSMVLTKMKETA 71
           ++M + K+K+T 
Sbjct: 119 AAMFIDKVKDTV 130

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383

 Score = 91.8 bits (229), Expect = 3e-24
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NT+F  KRLIGR+F D ++Q+D+   PF ++         VE KG  +  AP +IS
Sbjct: 60  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--QKMAPPQIS 116

Query: 61  SMVLTKMKETA 71
           + VL KMK+TA
Sbjct: 117 AEVLKKMKKTA 127

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605

 Score = 87.3 bits (217), Expect = 2e-22
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NT+F  KRLIGR+F D ++Q+D+   PF ++         VE KG  +  AP +IS
Sbjct: 60  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--QKMAPPQIS 116

Query: 61  SMVLTKMKETA 71
           + VL KMK+TA
Sbjct: 117 AEVLKKMKKTA 127

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509

 Score = 49.9 bits (120), Expect = 3e-09
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 28/71 (39%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP NT+   KR +G  +                         +VE +G  K + P+EIS
Sbjct: 59  TNP-NTIISIKRHMGTDY-------------------------KVEIEG--KQYTPQEIS 90

Query: 61  SMVLTKMKETA 71
           +++L  +K  A
Sbjct: 91  AIILQYLKSYA 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.71
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.71
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.61
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.61
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.57
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.55
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.41
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.12
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	98.25

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.71  E-value=1.6e-17  Score=116.11  Aligned_cols=73  Identities=34%  Similarity=0.586  Sum_probs=68.2

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      +||.||++++|||||+.++|+.++.+.+++||+++. .+|.+.+.+.+.|+.+.|+|+||++++|++|++.|++
T Consensus        59 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~  132 (675)
T 3d2f_A           59 SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQ  132 (675)
T ss_dssp             TCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             hChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999987 6899999998888778999999999999999999875

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.71  E-value=2e-17  Score=113.29  Aligned_cols=73  Identities=74%  Similarity=1.162  Sum_probs=68.4

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      +||.||++++|||||++++|+.++..++++||+++..+|.+.+.+.+.+..+.|+|+||++++|++|++.|+.
T Consensus        61 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~  133 (554)
T 1yuw_A           61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEA  133 (554)
T ss_dssp             TCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             hChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999877899999999988788999999999999999999875

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.61  E-value=7.7e-16  Score=106.39  Aligned_cols=70  Identities=44%  Similarity=0.706  Sum_probs=63.3

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++|||||+.++||.++...+++||+++. .+|.+.+.+  .  .+.++|+||++++|++|++.|+.|
T Consensus        60 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~--~--~~~~~p~ei~a~iL~~lk~~ae~~  130 (605)
T 4b9q_A           60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--K--GQKMAPPQISAEVLKKMKKTAEDY  130 (605)
T ss_dssp             TCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEEEE--T--TEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999987 788888776  2  468999999999999999999863

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.61  E-value=1.7e-15  Score=99.40  Aligned_cols=73  Identities=74%  Similarity=1.141  Sum_probs=68.4

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      .+|.|+++++||+||+.++|+.++...+.|||.++..+|.+.+.+.+.++.+.++|+||++++|++|++.|+.
T Consensus        80 ~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~  152 (404)
T 3i33_A           80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEA  152 (404)
T ss_dssp             TCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             hChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999888899999999988778999999999999999999875

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.55  E-value=3.5e-15  Score=103.15  Aligned_cols=70  Identities=46%  Similarity=0.742  Sum_probs=62.4

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhcC
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALYQ   74 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~~   74 (74)
                      +||.||++++||+||+.++|+.++...+++||+++. .+|.+.+.+  .|  +.|+|+||++++|++|++.|++|
T Consensus        60 ~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~--~g--~~~~~~ei~a~~L~~l~~~ae~~  130 (605)
T 2kho_A           60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDY  130 (605)
T ss_dssp             TCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999998999999886 788888877  33  68999999999999999998753

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.41  E-value=4.6e-13  Score=87.34  Aligned_cols=69  Identities=46%  Similarity=0.761  Sum_probs=60.8

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      .||.|+++++||+||+.++|+.++...+.+||+++. .+|.+.+.+  +|  +.++|+||++++|++|++.|+.
T Consensus        60 ~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~g--~~~~~~~i~~~~L~~l~~~a~~  129 (383)
T 1dkg_D           60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAED  129 (383)
T ss_dssp             TCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHH
T ss_pred             hCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEE--CC--EEEcHHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999999888899999876 678877776  33  5899999999999999998874

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.12  E-value=2.4e-11  Score=79.99  Aligned_cols=70  Identities=23%  Similarity=0.275  Sum_probs=58.1

Q ss_pred             CcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEEC----CeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           2 NPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK----GERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         2 np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~----~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      ||.||++.+||+||+.++++.++..  .+++.+...+|.+.+.+...    +..+.++|+||++++|++|++.|+.
T Consensus        71 ~~~~~i~~~K~llg~~~~~~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~  144 (409)
T 4gni_A           71 NPKNTVAYFRDILGQDFKSVDPTHN--HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASE  144 (409)
T ss_dssp             CGGGEEESCGGGTTCCGGGCCCGGG--TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             ChHhhHHHHHHHhCCCccchhhhhh--ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999998766544  44666666788888888754    3568899999999999999999875

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=98.25  E-value=1.1e-06  Score=59.72  Aligned_cols=45  Identities=38%  Similarity=0.705  Sum_probs=35.8

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      .|| ||++++||+||+.|              ++         .+  .|  +.++|+||++++|++|++.|+.
T Consensus        59 ~~p-~~~~~~Kr~lg~p~--------------~~---------~~--~g--~~~~~~ei~a~~L~~l~~~ae~  103 (509)
T 2v7y_A           59 TNP-NTIISIKRHMGTDY--------------KV---------EI--EG--KQYTPQEISAIILQYLKSYAED  103 (509)
T ss_dssp             TCS-SEEECGGGTTTSCC--------------CE---------EE--TT--EEECHHHHHHHHHHHHHHHHHH
T ss_pred             hCC-CcHHHHHHhcCCCc--------------EE---------EE--CC--EEEcHHHHHHHHHHHHHHHHHH
Confidence            478 99999999999843              21         12  23  4789999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1bupa1	185	c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas	2e-29
d1dkgd1	183	c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas	4e-23

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (250), Expect = 2e-29
 Identities = 54/71 (76%), Positives = 61/71 (85%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
           MNP NTVFDAKRLIGR+FDD  +Q DMKHWPF VVND  +PK+QVE+KGE K+F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117

Query: 61  SMVLTKMKETA 71
           SMVLTKMKE A
Sbjct: 118 SMVLTKMKEIA 128

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score = 84.3 bits (208), Expect = 4e-23
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEIS 60
            NP+NT+F  KRLIGR+F D ++Q+D+   PF ++         VE KG  +  AP +IS
Sbjct: 58  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--QKMAPPQIS 114

Query: 61  SMVLTKMKETA 71
           + VL KMK+TA
Sbjct: 115 AEVLKKMKKTA 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.7
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	99.68
d2ja9a2	85	Ribosomal RNA-processing protein 40, RRP40 {Saccha	92.57
d2nn6g3	80	Ribosomal RNA-processing protein 40, RRP40 {Human	88.85
d1jjcb2	75	Domains B1 and B5 of PheRS-beta, PheT {Thermus the	81.73
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	80.87
d1nj8a1	126	Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M	80.25

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=2.2e-17  Score=98.29  Aligned_cols=73  Identities=74%  Similarity=1.162  Sum_probs=68.0

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      .||+||++++|||||+.++|+.++...+.+|+.++.++|.....+...+..+.++|+||++++|++|++.|+.
T Consensus        58 ~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~  130 (185)
T d1bupa1          58 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEA  130 (185)
T ss_dssp             TCGGGEECCHHHHTTCCTTCHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccchhHHHHHhCCCCccHHHHHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999887888888888888889999999999999999999975

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.68  E-value=3.8e-17  Score=97.12  Aligned_cols=69  Identities=43%  Similarity=0.715  Sum_probs=61.8

Q ss_pred             CCcccchhcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHHhc
Q psy6083           1 MNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETALY   73 (74)
Q Consensus         1 ~np~nti~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~ae~   73 (74)
                      ++|+||++++|||||+.+.|+.++...+.+||+++. ++|.+.+.+    ..+.++|+||++++|++|++.|+.
T Consensus        58 ~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~l~a~~L~~l~~~a~~  127 (183)
T d1dkgd1          58 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV----KGQKMAPPQISAEVLKKMKKTAED  127 (183)
T ss_dssp             TCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEE----TTEEECHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccEEeeeHHHcCCCCCcHHHHhhhhcCCEEEEEcCCCcEEEEE----CCEEECHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999987 778877765    246799999999999999999985

>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Ribosomal RNA-processing protein 40, RRP40
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=92.57  E-value=0.039  Score=28.07  Aligned_cols=37  Identities=19%  Similarity=0.018  Sum_probs=27.9

Q ss_pred             hcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEE
Q psy6083           8 FDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQV   45 (74)
Q Consensus         8 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v   45 (74)
                      ..+.||||+.-. +.++...+..||+|.- .||.+|+.-
T Consensus        10 ~~~rrll~~~~~-~ml~~l~~~~~~eI~VG~NGrIWi~~   47 (85)
T d2ja9a2          10 NFARQLLFNNDF-PLLKVLAAHTKFEVAIGLNGKIWVKC   47 (85)
T ss_dssp             HHHHHHHHCTTC-CHHHHHHTTCCCEEEEETTTEEEEEC
T ss_pred             HHHHHHHcCCCC-hHHHHHHhhcCceEEEecCcEEEEEC
Confidence            456799987632 4677778889999865 899988763

>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Ribosomal RNA-processing protein 40, RRP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.1  Score=26.22  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=27.5

Q ss_pred             hcchhhcCCCCCChHHHhhcccCCeEEEe-CCCcceEEE
Q psy6083           8 FDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQV   45 (74)
Q Consensus         8 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~-~~g~~~~~v   45 (74)
                      .-..||+..  +.+.++...+++||+|.- -||++|+.-
T Consensus        10 ~laR~Ll~~--~~~vL~~Lgk~~~FEIavG~NGrVWvk~   46 (80)
T d2nn6g3          10 GLIRKLLAP--DCEIIQEVGKLYPLEIVFGMNGRIWVKA   46 (80)
T ss_dssp             HHHHHHHCT--TCSHHHHTTCSSSCCCEEETTTEEEECC
T ss_pred             HHHHHHhcC--CCHHHHHHhhhCCeEEEEecCCeEEEeC
Confidence            445678854  457788888899999865 899988763

>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: Domains B1 and B5 of PheRS-beta, PheT
domain: Domains B1 and B5 of PheRS-beta, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=81.73  E-value=0.49  Score=22.97  Aligned_cols=38  Identities=16%  Similarity=0.200  Sum_probs=28.4

Q ss_pred             hcchhhcCCCCCChHHHhhcccCCeEEEeCCCcceEEE
Q psy6083           8 FDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQV   45 (74)
Q Consensus         8 ~~~KrliG~~~~d~~v~~~~~~~p~~i~~~~g~~~~~v   45 (74)
                      ..+.+++|..+++..+...++++-|++...++...+.+
T Consensus        10 ~~i~~~lG~~i~~~~i~~~L~~Lg~~~~~~~~~~~V~v   47 (75)
T d1jjcb2          10 EYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTP   47 (75)
T ss_dssp             HHHHHHHTCCCCHHHHHHHHHHTTCEEECSSSSEEEEC
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHcCCceEecCCcEEEec
Confidence            45789999999999998888999999755434333433

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.87  E-value=1.2  Score=22.62  Aligned_cols=46  Identities=9%  Similarity=0.259  Sum_probs=31.6

Q ss_pred             hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHHH
Q psy6083          26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETA   71 (74)
Q Consensus        26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~a   71 (74)
                      .....||-++-     .+|.+.+.-...++...++.+++...+...+++.+
T Consensus        54 ~~~g~p~~iiiG~~E~~~~~V~ir~~~~~~q~~i~~~e~i~~l~~~i~~r~  104 (110)
T d1qf6a1          54 TLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRS  104 (110)
T ss_dssp             HHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCEEEEECchHHhCCEEEEEECCCCceEEeeHHHHHHHHHHHHHHHH
Confidence            45678998752     24655554333456678999999999888887654

>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Prolyl-tRNA synthetase (ProRS) domain
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Probab=80.25  E-value=1.4  Score=22.92  Aligned_cols=45  Identities=11%  Similarity=0.128  Sum_probs=30.3

Q ss_pred             hcccCCeEEEe-----CCCcceEEEEECCeeEEEchhhhHHHHHHHHHHH
Q psy6083          26 DMKHWPFTVVN-----DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKET   70 (74)
Q Consensus        26 ~~~~~p~~i~~-----~~g~~~~~v~~~~~~~~~speev~a~iL~~lk~~   70 (74)
                      +...+||.|+-     ++|.+.+.-...++...++.+++...+-+.|.++
T Consensus        62 ~~~giP~~iiiG~ke~~~~~v~lr~R~~~~~~~v~~~~l~~~i~~~l~~~  111 (126)
T d1nj8a1          62 EIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNI  111 (126)
T ss_dssp             HHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccchhhCCEEEEEEcCCCceEEEcHHHHHHHHHHHHHHH
Confidence            45678999752     3677665543445667788888887776666543