Psyllid ID: psy6101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MTVYATPRSQHAKPPSQAQSACEQHTNLMKPDLSKVQSQPLDRSRGGGRGCRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLCHGILISSDSNLSWNVDLEQQSPVYENVEEEPVLTSLVFCGSQIVKNSVRSMSKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccccccccccccccHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHcccccccHHHcHHHHHHHHHHHHcccccEEcccccHHHHHHHHHHcccEEEccccHHHHHHHHHcHEEEEEccccccEEEEEccccccccccHHccccHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHcccccccHHccHHHHHHHHHHHHccccEEEEcccccccccc
Coil and Loop (DISEMBL)
mtvyatprsqhakppsqaqsaceqhtnlmkpdlskvqsqpldrsrgggrgcrlgdfrhwlsnsgmnEDLLKQYDQLinlpsndwdiyywatgvrpiplqfNNEVMKLLQDHTKnkdrqarlrqpDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLCHGILissdsnlswnvdleqqspvyenveeepvltsLVFCGSQIVKNSVrsmskeifppsqepeipayqervgEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLinlpsndwdiyywatgvrpiplqfNNEVMKLLQDHTKnkdrqarlrqpdlyetvs
Flexible Loop (DISEMBL)
mtvyatprsqhakppsqaQSACEQHTNlmkpdlskvqsqpldrsrgggrgcRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLCHGILISSDSNLSWNVDLEQQSPVYENVEEEPVLTSLVFCGSQIVKNSVRSMSKEifppsqepeipayqervgeplELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHtknkdrqarlrqpdlyetvs
Low Complexity Region (SEG)
MTVYATPRSQHAKPPSQAQSACEQHTNLMKPDLSKVQSQPLDrsrgggrgcrlgdfrHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLCHGILISSDSNLSWNVDLEQQSPVYENVEEEPVLTSLVFCGSQIVKNSVRSMSKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETVS
Disordered region (IsUnstruct)
*************************************************GCRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQD***********RQPDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLCHGILISSDSNLSWNVDLEQQSPVYENVEEEPVLTSLVFCGSQIVK***********************************RLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLL***********************
Disordered Region (DISOPRED)
************************************QSQPLDRSRGGGRGCRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTK********RQPDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLC*********************************************************************************LLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTK******************
Disordered Region (DISEMBL)
***********************QHTNLMKPDL**************GRGCRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLCHGILISSDSNLSWNVDLEQQSPVYENVEEEPVLTSLVFCGSQIVKNSVRSMSKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETVS
Disordered Region (DISPRO)
MTV****RSQHA***************LMKPDLSKVQSQPLDRSRGGGRGCRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLCHGILISSDSNLSWNVDLEQQSPVYENVEEEPVLTSLVFCGSQIVKNSVRSMSKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVYATPRSQHAKPPSQAQSACEQHTNLMKPDLSKVQSQPLDRSRGGGRGCRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETLLTLQHLGIKFYGSFGIRSRALLLDRRYCWLSHFDLCHGILISSDSNLSWNVDLEQQSPVYENVEEEPVLTSLVFCGSQIVKNSVRSMSKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q178L7	161	Succinate dehydrogenase a	N/A	N/A	0.316	0.670	0.657	8e-39
B3MGU5	163	Succinate dehydrogenase a	N/A	N/A	0.328	0.687	0.651	1e-36
B0XK69	159	Succinate dehydrogenase a	N/A	N/A	0.316	0.679	0.629	1e-36
B4MRE7	157	Succinate dehydrogenase a	N/A	N/A	0.313	0.681	0.644	6e-34
B4GDB3	160	Succinate dehydrogenase a	N/A	N/A	0.313	0.668	0.654	1e-33
B5DZ31	160	Succinate dehydrogenase a	yes	N/A	0.313	0.668	0.654	1e-33
B4KN44	157	Succinate dehydrogenase a	N/A	N/A	0.407	0.885	0.541	3e-33
B3MI37	156	Succinate dehydrogenase a	N/A	N/A	0.384	0.839	0.552	4e-33
B4QFP7	163	Succinate dehydrogenase a	N/A	N/A	0.313	0.656	0.644	5e-33
B4HRL4	163	Succinate dehydrogenase a	N/A	N/A	0.313	0.656	0.644	5e-33

>sp|Q178L7|SDHF2_AEDAE Succinate dehydrogenase assembly factor 2, mitochondrial OS=Aedes aegypti GN=AAEL005866 PE=3 SV=1

 Score =  161 bits (407), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 93/108 (86%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           IP Y+E+  EPL+L+K+RLLYQSRKRGMLENGLLLSTFAAK+L++M+    K YDQLIN+
Sbjct: 54  IPIYKEKKNEPLQLQKSRLLYQSRKRGMLENGLLLSTFAAKHLESMDVKQTKLYDQLINM 113

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLY 337
           P+NDWDI+YWATGV+P P +++NE+M LL+DH KN +R+ R+ QP+LY
Sbjct: 114 PTNDWDIFYWATGVKPTPAEYDNEIMALLKDHVKNANREKRICQPNLY 161

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.
Aedes aegypti (taxid: 7159)

>sp|B3MGU5|SDF2B_DROAN Succinate dehydrogenase assembly factor 2-B, mitochondrial OS=Drosophila ananassae GN=GF11203 PE=3 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 88/112 (78%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           +P Y  R  EPL++RK RLLYQSRKRGMLEN LLLSTFAAKYLD  N +   QYDQLIN 
Sbjct: 52  LPEYPVRPNEPLDIRKQRLLYQSRKRGMLENDLLLSTFAAKYLDNFNAEQTAQYDQLING 111

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETVS 341
            SNDWDIYYWAT V+P P +++ E+M+LL+DH KN +R +R+RQPDLY + S
Sbjct: 112 VSNDWDIYYWATDVKPTPKEYDTEIMRLLKDHVKNAERISRIRQPDLYSSES 163

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Drosophila ananassae (taxid: 7217)

>sp|B0XK69|SDHF2_CULQU Succinate dehydrogenase assembly factor 2, mitochondrial OS=Culex quinquefasciatus GN=CPIJ019830 PE=3 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 91/108 (84%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           IP Y+E+  EPL+L+K+RLLYQSRKRGMLENGLLLSTFAAKYL++++    K YD LIN+
Sbjct: 52  IPIYKEKHNEPLKLQKSRLLYQSRKRGMLENGLLLSTFAAKYLESLDARQTKLYDTLINM 111

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLY 337
           P+NDWDI+YWATGV+P P +++NE+M +L++H KN +++ RL QP LY
Sbjct: 112 PTNDWDIFYWATGVKPTPQEYDNEIMNMLKEHVKNANKEKRLCQPALY 159

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Culex quinquefasciatus (taxid: 7176)

>sp|B4MRE7|SDF2A_DROWI Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila willistoni GN=GK15773 PE=3 SV=1

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 82/107 (76%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           +P Y +R  EPLE+RK RL+YQSRKRGMLEN LLLSTFAAKYL   NE+    YDQLIN 
Sbjct: 50  LPEYPQRPNEPLEIRKQRLVYQSRKRGMLENDLLLSTFAAKYLKNFNEEQTAIYDQLING 109

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
            SNDWDIYYWAT V+  P ++N E+M+LL++H KN +R  R RQPDL
Sbjct: 110 VSNDWDIYYWATDVKTTPAEYNTEIMQLLKEHVKNTERVQRFRQPDL 156

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Drosophila willistoni (taxid: 7260)

>sp|B4GDB3|SDF2A_DROPE Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila persimilis GN=GL10881 PE=3 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 80/107 (74%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           +P Y  R  EPLE RK RLLYQSRKRGMLEN LLLSTFAAKYL   + +    YDQLIN 
Sbjct: 53  LPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKYLKDFSAEQTAIYDQLING 112

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
            SNDWDIYYWAT V+P P ++N E+MKLL++H KN +R  R RQPDL
Sbjct: 113 VSNDWDIYYWATEVKPTPEEYNTEIMKLLKEHVKNAERVTRFRQPDL 159

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Drosophila persimilis (taxid: 7234)

>sp|B5DZ31|SDF2B_DROPS Succinate dehydrogenase assembly factor 2-B, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA24523 PE=3 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 80/107 (74%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           +P Y  R  EPLE RK RLLYQSRKRGMLEN LLLSTFAAKYL   + +    YDQLIN 
Sbjct: 53  LPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKYLKDFSAEQTAIYDQLING 112

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
            SNDWDIYYWAT V+P P ++N E+MKLL++H KN +R  R RQPDL
Sbjct: 113 VSNDWDIYYWATEVKPTPEEYNTEIMKLLKEHVKNAERVTRFRQPDL 159

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4KN44|SDF2A_DROMO Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila mojavensis GN=GI20197 PE=3 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 5/144 (3%)

Query: 198 VLTSLVFC--GSQIVKNSVR-SMSKEIFPPSQEPE--IPAYQERVGEPLELRKARLLYQS 252
           +L S   C  G Q V + +  S   EI    + P   +P Y  R  EPLE RK RLLYQS
Sbjct: 14  LLVSPTRCMSGKQNVPDKIEYSTPPEIIDYEESPHLPVPEYPIRPDEPLETRKQRLLYQS 73

Query: 253 RKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNN 312
           RKRGMLEN LLLSTF AKYL   + +   QYDQLIN  SNDWDIYYWAT  +P P +++ 
Sbjct: 74  RKRGMLENDLLLSTFVAKYLKDFDAEETAQYDQLINGVSNDWDIYYWATNTKPTPPEYDT 133

Query: 313 EVMKLLQDHTKNKDRQARLRQPDL 336
           +VMKLL+ H KN +R  R+RQPDL
Sbjct: 134 DVMKLLKQHVKNTERVQRIRQPDL 157

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Drosophila mojavensis (taxid: 7230)

>sp|B3MI37|SDF2A_DROAN Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila ananassae GN=GF11110 PE=3 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 88/134 (65%), Gaps = 3/134 (2%)

Query: 205 CGSQIVKNSVRSMSKEIFPPSQEPEIPA--YQERVGEPLELRKARLLYQSRKRGMLENGL 262
           C S + K S  +   EI      P IP   Y  R  EPLE RK RLLYQSRKRGMLEN L
Sbjct: 24  CASNLDK-SEYTTPGEIVDYDDPPHIPVPEYPSRPDEPLETRKQRLLYQSRKRGMLENDL 82

Query: 263 LLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHT 322
           LLSTF AKYL +   D   QYD LIN  SNDWDI+YWAT  +P P +F+ E+M+LL++H 
Sbjct: 83  LLSTFVAKYLKSFTADQTAQYDDLINGVSNDWDIFYWATETKPTPPEFDTEIMRLLKEHV 142

Query: 323 KNKDRQARLRQPDL 336
           KN ++  R+RQPDL
Sbjct: 143 KNAEKVQRIRQPDL 156

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Drosophila ananassae (taxid: 7217)

>sp|B4QFP7|SDF2A_DROSI Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila simulans GN=GD10178 PE=3 SV=1

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 81/107 (75%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           +P Y  R  EPLE RK RLLYQSRKRGMLEN LLLSTFAAK+L   + +   QYDQLIN 
Sbjct: 55  LPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKHLQNFSAEQTAQYDQLING 114

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
            SNDWDIYYWAT V+P P +++ E+M LL++H KN +R  RLRQPDL
Sbjct: 115 VSNDWDIYYWATEVKPTPKEYDTEIMGLLKEHVKNAERVTRLRQPDL 161

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Drosophila simulans (taxid: 7240)

>sp|B4HRL4|SDF2A_DROSE Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila sechellia GN=GM20711 PE=3 SV=1

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 81/107 (75%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           +P Y  R  EPLE RK RLLYQSRKRGMLEN LLLSTFAAK+L   + +   QYDQLIN 
Sbjct: 55  LPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKHLQNFSAEQTAQYDQLING 114

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
            SNDWDIYYWAT V+P P +++ E+M LL++H KN +R  RLRQPDL
Sbjct: 115 VSNDWDIYYWATEVKPTPKEYDTEIMGLLKEHVKNAERVTRLRQPDL 161

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
345495643	151	PREDICTED: succinate dehydrogenase assem	0.337	0.761	0.695	4e-40
332023926	181	Succinate dehydrogenase subunit 5, mitoc	0.343	0.646	0.655	1e-38
321478706	108	hypothetical protein DAPPUDRAFT_40617 [D	0.316	1.0	0.694	3e-38
242011721	151	early meiotic induction protein 5, putat	0.407	0.920	0.587	3e-38
156554685	149	PREDICTED: succinate dehydrogenase assem	0.410	0.939	0.546	4e-38
157169420	161	hypothetical protein AaeL_AAEL005866 [Ae	0.316	0.670	0.657	5e-37
158300413	145	AGAP012191-PA [Anopheles gambiae str. PE	0.316	0.744	0.685	7e-37
380011305	150	PREDICTED: LOW QUALITY PROTEIN: succinat	0.340	0.773	0.655	2e-36
350417155	151	PREDICTED: succinate dehydrogenase assem	0.401	0.907	0.562	3e-36
322801999	161	hypothetical protein SINV_05965 [Solenop	0.340	0.720	0.624	6e-36

>gi|345495643|ref|XP_001605735.2| PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial-like [Nasonia vitripennis]

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/115 (69%), Positives = 94/115 (81%)

Query: 223 PPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQ 282
           P  +EP IP Y ER GE + ++KARLLYQSRKRGMLENGLLLSTFA KYLD  NE+ LKQ
Sbjct: 37  PEGREPSIPLYTEREGENVSVKKARLLYQSRKRGMLENGLLLSTFAKKYLDHFNEEQLKQ 96

Query: 283 YDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLY 337
           YD+LINLPSNDWDI+YWA  V+P+P +F NEVM LL+ H KN+ R+AR+ QPDLY
Sbjct: 97  YDRLINLPSNDWDIFYWAAEVKPVPPEFENEVMDLLKKHIKNEHREARITQPDLY 151

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023926|gb|EGI64144.1| Succinate dehydrogenase subunit 5, mitochondrial [Acromyrmex echinatior]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 97/119 (81%)

Query: 218 SKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNE 277
           +K I P  QEP+IP Y +R GE   L++ARL YQSRKRGMLENG+LLSTFA KYL+T ++
Sbjct: 63  NKLIHPEGQEPDIPRYVKREGENANLKRARLTYQSRKRGMLENGILLSTFANKYLNTFDD 122

Query: 278 DLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
             L+ YDQLINLPSNDWDI+YWATGV+P P +F+NEVM LL++H +N+DRQA + QPDL
Sbjct: 123 KQLRLYDQLINLPSNDWDIFYWATGVKPTPPEFDNEVMDLLKNHIQNEDRQAGIMQPDL 181

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478706|gb|EFX89663.1| hypothetical protein DAPPUDRAFT_40617 [Daphnia pulex]

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 91/108 (84%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           IP Y ER  E   L+KARL+YQSRKRGMLENGL+LSTFA++YLD M++D +  YD+LINL
Sbjct: 1   IPPYVERENESSTLKKARLMYQSRKRGMLENGLILSTFASRYLDGMSDDQMSLYDRLINL 60

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLY 337
           PSNDWDIYYWATGVR  P +FNNE+M LL+DH KNKD+++R +QPDLY
Sbjct: 61  PSNDWDIYYWATGVRETPEEFNNEIMNLLKDHVKNKDKESRFKQPDLY 108

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011721|ref|XP_002426595.1| early meiotic induction protein 5, putative [Pediculus humanus corporis] gi|212510744|gb|EEB13857.1| early meiotic induction protein 5, putative [Pediculus humanus corporis]

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 106/143 (74%), Gaps = 4/143 (2%)

Query: 198 VLTSLVFCGSQIVKNSV-RSMSKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRG 256
           + T +V   ++I+ N    S S  I P S    IP Y+E+ GEPLE ++ARL+YQSRKRG
Sbjct: 11  IKTLMVTSKNRILLNKYYTSDSSYIIPDSF---IPPYEEKQGEPLEQKRARLMYQSRKRG 67

Query: 257 MLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMK 316
           MLEN L+LSTFAA++L  M E+ L  YD+LINLPSNDWDIYYWATG +P P +FNNEVM 
Sbjct: 68  MLENDLVLSTFAAEHLHKMTENQLSLYDRLINLPSNDWDIYYWATGGKPTPEEFNNEVMN 127

Query: 317 LLQDHTKNKDRQARLRQPDLYET 339
           +L++H KNKD+  R+RQPDLY T
Sbjct: 128 MLKEHIKNKDKVMRIRQPDLYST 150

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554685|ref|XP_001603484.1| PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial-like [Nasonia vitripennis]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 102/141 (72%), Gaps = 1/141 (0%)

Query: 197 PVLTSLVFCGSQIVKNSVRSMSKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRG 256
           P +   V   S+ +  +  + +KE    + +  +P + E+ GE   +++ARLLYQSRKRG
Sbjct: 10  PAMVRHVLSASRNISTTCVTKNKEPVDDTSDHNVPPFIEK-GESTSIKRARLLYQSRKRG 68

Query: 257 MLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMK 316
           MLENGLLLSTFA KYLD  N+  L QYD+LINLPSNDWDIYYWA GV+P+P +F NEVM 
Sbjct: 69  MLENGLLLSTFAKKYLDDFNDKHLHQYDRLINLPSNDWDIYYWAAGVKPVPAEFKNEVMD 128

Query: 317 LLQDHTKNKDRQARLRQPDLY 337
           LLQ H KN++R++R+ QPDL+
Sbjct: 129 LLQKHIKNENRESRIVQPDLH 149

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157169420|ref|XP_001651508.1| hypothetical protein AaeL_AAEL005866 [Aedes aegypti] gi|122117908|sp|Q178L7.1|SDHF2_AEDAE RecName: Full=Succinate dehydrogenase assembly factor 2, mitochondrial; Short=SDH assembly factor 2; AltName: Full=Succinate dehydrogenase subunit 5, mitochondrial; Flags: Precursor gi|108878400|gb|EAT42625.1| AAEL005866-PA [Aedes aegypti]

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 93/108 (86%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           IP Y+E+  EPL+L+K+RLLYQSRKRGMLENGLLLSTFAAK+L++M+    K YDQLIN+
Sbjct: 54  IPIYKEKKNEPLQLQKSRLLYQSRKRGMLENGLLLSTFAAKHLESMDVKQTKLYDQLINM 113

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLY 337
           P+NDWDI+YWATGV+P P +++NE+M LL+DH KN +R+ R+ QP+LY
Sbjct: 114 PTNDWDIFYWATGVKPTPAEYDNEIMALLKDHVKNANREKRICQPNLY 161

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300413|ref|XP_320341.4| AGAP012191-PA [Anopheles gambiae str. PEST] gi|157013147|gb|EAA00134.4| AGAP012191-PA [Anopheles gambiae str. PEST]

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 90/108 (83%)

Query: 230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
           IP Y+++  EPL+L+K+RLLYQSRKRGMLENGLLLSTFAAKYL  M+    K YDQLINL
Sbjct: 34  IPEYKQKKNEPLQLQKSRLLYQSRKRGMLENGLLLSTFAAKYLAEMSPAQTKLYDQLINL 93

Query: 290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLY 337
           PSNDWDI+YWATGV+P P +++NEVM +L++H KN DR+ R  QPDLY
Sbjct: 94  PSNDWDIFYWATGVKPTPKEYDNEVMNMLKNHVKNNDREQRFMQPDLY 141

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011305|ref|XP_003689749.1| PREDICTED: LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 2, mitochondrial-like [Apis florea]

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 92/116 (79%)

Query: 221 IFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLL 280
           I P SQEP IP Y +R  E  +++KARLLYQSRKRGMLENGLLLSTFA KYL   ++  L
Sbjct: 35  IHPESQEPNIPLYVKRNEESKDIKKARLLYQSRKRGMLENGLLLSTFAKKYLCDFDDKQL 94

Query: 281 KQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
           + YD LINLP+NDWDI+YWATG +P P +F+NEVM LL+ H KN+DRQAR+ QP+L
Sbjct: 95  QLYDHLINLPTNDWDIFYWATGAKPTPPEFDNEVMDLLKXHIKNEDRQARIMQPEL 150

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417155|ref|XP_003491283.1| PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial-like [Bombus impatiens]

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 97/137 (70%)

Query: 200 TSLVFCGSQIVKNSVRSMSKEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLE 259
            SLV C S    +        I P SQ+ +IP Y++R  E  +++KARLLYQSRKRGMLE
Sbjct: 15  VSLVKCISTTCAHYKDDFQDVIHPESQKLDIPLYEKRSEENKDVKKARLLYQSRKRGMLE 74

Query: 260 NGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQ 319
           NGL+LSTFA KYL + ++  L  YD LINLP+NDWDI+YWATG +P P +F+NEVM LL+
Sbjct: 75  NGLILSTFAKKYLSSFDDKQLHLYDCLINLPTNDWDIFYWATGAKPTPPEFDNEVMDLLK 134

Query: 320 DHTKNKDRQARLRQPDL 336
            H KN DRQ R+ QP+L
Sbjct: 135 KHIKNADRQTRIMQPEL 151

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801999|gb|EFZ22536.1| hypothetical protein SINV_05965 [Solenopsis invicta]

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 94/125 (75%), Gaps = 9/125 (7%)

Query: 221 IFPPSQEPEIPAYQERVGEPLELRKAR---------LLYQSRKRGMLENGLLLSTFAAKY 271
           I P  +EP IP Y ER GE   L++AR         L YQSRKRGMLENGLLLSTFA KY
Sbjct: 37  IHPEGREPGIPRYVEREGEDASLKRARIYFIYCYFRLTYQSRKRGMLENGLLLSTFANKY 96

Query: 272 LDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARL 331
           L+T ++  L+ YD+LINLPSNDWDI+YWATGV+P P +F+NEVM LL+ H +N+DRQAR+
Sbjct: 97  LNTFDDKQLRLYDRLINLPSNDWDIFYWATGVKPTPREFDNEVMDLLKKHIQNEDRQARI 156

Query: 332 RQPDL 336
            QPDL
Sbjct: 157 TQPDL 161

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
UNIPROTKB|Q178L7	161	AAEL005866 "Succinate dehydrog	0.316	0.670	0.657	2.4e-37
UNIPROTKB|B3MGU5	163	GF11203 "Succinate dehydrogena	0.343	0.717	0.635	1e-36
UNIPROTKB|B0XK69	159	CPIJ019830 "Succinate dehydrog	0.316	0.679	0.629	1.2e-35
UNIPROTKB|B4MRE7	157	GK15773 "Succinate dehydrogena	0.313	0.681	0.644	5.8e-34
UNIPROTKB|B4GDB3	160	GL10881 "Succinate dehydrogena	0.351	0.75	0.585	9.5e-34
UNIPROTKB|B5DZ31	160	GA24523 "Succinate dehydrogena	0.351	0.75	0.585	9.5e-34
UNIPROTKB|B4KN44	157	GI20197 "Succinate dehydrogena	0.407	0.885	0.541	1.2e-33
UNIPROTKB|B4HRL4	163	GM20711 "Succinate dehydrogena	0.328	0.687	0.628	3.2e-33
UNIPROTKB|B4QFP7	163	GD10178 "Succinate dehydrogena	0.328	0.687	0.628	3.2e-33
UNIPROTKB|B3N8S9	162	GG10665 "Succinate dehydrogena	0.328	0.691	0.619	4.1e-33

UNIPROTKB|Q178L7 AAEL005866 "Succinate dehydrogenase assembly factor 2, mitochondrial" [Aedes aegypti (taxid:7159)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 71/108 (65%), Positives = 93/108 (86%)

Query:   230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
             IP Y+E+  EPL+L+K+RLLYQSRKRGMLENGLLLSTFAAK+L++M+    K YDQLIN+
Sbjct:    54 IPIYKEKKNEPLQLQKSRLLYQSRKRGMLENGLLLSTFAAKHLESMDVKQTKLYDQLINM 113

Query:   290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLY 337
             P+NDWDI+YWATGV+P P +++NE+M LL+DH KN +R+ R+ QP+LY
Sbjct:   114 PTNDWDIFYWATGVKPTPAEYDNEIMALLKDHVKNANREKRICQPNLY 161

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B3MGU5 GF11203 "Succinate dehydrogenase assembly factor 2-B, mitochondrial" [Drosophila ananassae (taxid:7217)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 75/118 (63%), Positives = 90/118 (76%)

Query:   224 PSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQY 283
             P   P +P Y  R  EPL++RK RLLYQSRKRGMLEN LLLSTFAAKYLD  N +   QY
Sbjct:    47 PDYLP-LPEYPVRPNEPLDIRKQRLLYQSRKRGMLENDLLLSTFAAKYLDNFNAEQTAQY 105

Query:   284 DQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLYETVS 341
             DQLIN  SNDWDIYYWAT V+P P +++ E+M+LL+DH KN +R +R+RQPDLY + S
Sbjct:   106 DQLINGVSNDWDIYYWATDVKPTPKEYDTEIMRLLKDHVKNAERISRIRQPDLYSSES 163

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B0XK69 CPIJ019830 "Succinate dehydrogenase assembly factor 2, mitochondrial" [Culex quinquefasciatus (taxid:7176)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 68/108 (62%), Positives = 91/108 (84%)

Query:   230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
             IP Y+E+  EPL+L+K+RLLYQSRKRGMLENGLLLSTFAAKYL++++    K YD LIN+
Sbjct:    52 IPIYKEKHNEPLKLQKSRLLYQSRKRGMLENGLLLSTFAAKYLESLDARQTKLYDTLINM 111

Query:   290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDLY 337
             P+NDWDI+YWATGV+P P +++NE+M +L++H KN +++ RL QP LY
Sbjct:   112 PTNDWDIFYWATGVKPTPQEYDNEIMNMLKEHVKNANKEKRLCQPALY 159

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B4MRE7 GK15773 "Succinate dehydrogenase assembly factor 2-A, mitochondrial" [Drosophila willistoni (taxid:7260)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 69/107 (64%), Positives = 82/107 (76%)

Query:   230 IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINL 289
             +P Y +R  EPLE+RK RL+YQSRKRGMLEN LLLSTFAAKYL   NE+    YDQLIN 
Sbjct:    50 LPEYPQRPNEPLEIRKQRLVYQSRKRGMLENDLLLSTFAAKYLKNFNEEQTAIYDQLING 109

Query:   290 PSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
              SNDWDIYYWAT V+  P ++N E+M+LL++H KN +R  R RQPDL
Sbjct:   110 VSNDWDIYYWATDVKTTPAEYNTEIMQLLKEHVKNTERVQRFRQPDL 156

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B4GDB3 GL10881 "Succinate dehydrogenase assembly factor 2-A, mitochondrial" [Drosophila persimilis (taxid:7234)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 72/123 (58%), Positives = 88/123 (71%)

Query:   217 MSKEIFPPSQEPE---IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLD 273
             +S ++    ++P+   +P Y  R  EPLE RK RLLYQSRKRGMLEN LLLSTFAAKYL 
Sbjct:    37 ISDDVIVDYEDPDYLPLPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKYLK 96

Query:   274 TMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQ 333
               + +    YDQLIN  SNDWDIYYWAT V+P P ++N E+MKLL++H KN +R  R RQ
Sbjct:    97 DFSAEQTAIYDQLINGVSNDWDIYYWATEVKPTPEEYNTEIMKLLKEHVKNAERVTRFRQ 156

Query:   334 PDL 336
             PDL
Sbjct:   157 PDL 159

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B5DZ31 GA24523 "Succinate dehydrogenase assembly factor 2-B, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 72/123 (58%), Positives = 88/123 (71%)

Query:   217 MSKEIFPPSQEPE---IPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLD 273
             +S ++    ++P+   +P Y  R  EPLE RK RLLYQSRKRGMLEN LLLSTFAAKYL 
Sbjct:    37 ISDDVIVDYEDPDYLPLPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKYLK 96

Query:   274 TMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQ 333
               + +    YDQLIN  SNDWDIYYWAT V+P P ++N E+MKLL++H KN +R  R RQ
Sbjct:    97 DFSAEQTAIYDQLINGVSNDWDIYYWATEVKPTPEEYNTEIMKLLKEHVKNAERVTRFRQ 156

Query:   334 PDL 336
             PDL
Sbjct:   157 PDL 159

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B4KN44 GI20197 "Succinate dehydrogenase assembly factor 2-A, mitochondrial" [Drosophila mojavensis (taxid:7230)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 78/144 (54%), Positives = 93/144 (64%)

Query:   198 VLTSLVFC--GSQIVKNSVR-SMSKEIFPPSQEPEIPA--YQERVGEPLELRKARLLYQS 252
             +L S   C  G Q V + +  S   EI    + P +P   Y  R  EPLE RK RLLYQS
Sbjct:    14 LLVSPTRCMSGKQNVPDKIEYSTPPEIIDYEESPHLPVPEYPIRPDEPLETRKQRLLYQS 73

Query:   253 RKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNN 312
             RKRGMLEN LLLSTF AKYL   + +   QYDQLIN  SNDWDIYYWAT  +P P +++ 
Sbjct:    74 RKRGMLENDLLLSTFVAKYLKDFDAEETAQYDQLINGVSNDWDIYYWATNTKPTPPEYDT 133

Query:   313 EVMKLLQDHTKNKDRQARLRQPDL 336
             +VMKLL+ H KN +R  R+RQPDL
Sbjct:   134 DVMKLLKQHVKNTERVQRIRQPDL 157

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B4HRL4 GM20711 "Succinate dehydrogenase assembly factor 2-A, mitochondrial" [Drosophila sechellia (taxid:7238)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 71/113 (62%), Positives = 83/113 (73%)

Query:   224 PSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQY 283
             P   P +P Y  R  EPLE RK RLLYQSRKRGMLEN LLLSTFAAK+L   + +   QY
Sbjct:    50 PDYLP-LPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKHLQNFSAEQTAQY 108

Query:   284 DQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
             DQLIN  SNDWDIYYWAT V+P P +++ E+M LL++H KN +R  RLRQPDL
Sbjct:   109 DQLINGVSNDWDIYYWATEVKPTPKEYDTEIMGLLKEHVKNAERVTRLRQPDL 161

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B4QFP7 GD10178 "Succinate dehydrogenase assembly factor 2-A, mitochondrial" [Drosophila simulans (taxid:7240)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 71/113 (62%), Positives = 83/113 (73%)

Query:   224 PSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQY 283
             P   P +P Y  R  EPLE RK RLLYQSRKRGMLEN LLLSTFAAK+L   + +   QY
Sbjct:    50 PDYLP-LPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKHLQNFSAEQTAQY 108

Query:   284 DQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
             DQLIN  SNDWDIYYWAT V+P P +++ E+M LL++H KN +R  RLRQPDL
Sbjct:   109 DQLINGVSNDWDIYYWATEVKPTPKEYDTEIMGLLKEHVKNAERVTRLRQPDL 161

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|B3N8S9 GG10665 "Succinate dehydrogenase assembly factor 2-A, mitochondrial" [Drosophila erecta (taxid:7220)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 70/113 (61%), Positives = 85/113 (75%)

Query:   224 PSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQY 283
             P   P +P Y  R  EPL+ RK RLLYQSRKRGMLEN LLLSTFAAK+L + + +   QY
Sbjct:    49 PDYLP-LPEYPLRPNEPLQTRKQRLLYQSRKRGMLENDLLLSTFAAKHLQSFSAEQTAQY 107

Query:   284 DQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQPDL 336
             DQLIN  SNDWDIYYWAT V+P P +++ E+M LL++H KN +R +RLRQPDL
Sbjct:   108 DQLINGVSNDWDIYYWATDVKPTPKEYDTEIMGLLKEHVKNAERVSRLRQPDL 160

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ZBC2	SDHF2_BOVIN	No assigned EC number	0.6074	0.3137	0.6445	yes	N/A
Q08230	SDHF2_YEAST	No assigned EC number	0.5188	0.2903	0.6111	yes	N/A
Q5RJQ7	SDHF2_RAT	No assigned EC number	0.6168	0.3020	0.6280	yes	N/A
Q9NX18	SDHF2_HUMAN	No assigned EC number	0.6074	0.3137	0.6445	yes	N/A
B5DZ31	SDF2B_DROPS	No assigned EC number	0.6542	0.3137	0.6687	yes	N/A
Q4V5I9	SDF2A_DROME	No assigned EC number	0.6448	0.3137	0.6564	yes	N/A
Q5R4W7	SDHF2_PONAB	No assigned EC number	0.6074	0.3137	0.6445	yes	N/A
Q6CND9	SDHF2_KLULA	No assigned EC number	0.5377	0.2903	0.6073	yes	N/A
Q8C6I2	SDHF2_MOUSE	No assigned EC number	0.6074	0.3020	0.6280	yes	N/A
A3GHR8	SDHF2_PICST	No assigned EC number	0.5094	0.2903	0.6644	yes	N/A
A3KP74	SDHF2_DANRE	No assigned EC number	0.5789	0.3343	0.7215	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	341
COG2938	94	COG2938, COG2938, Uncharacterized conserved protei	4e-20
pfam03937	51	pfam03937, Sdh5, Flavinator of succinate dehydroge	8e-17
COG2938	94	COG2938, COG2938, Uncharacterized conserved protei	8e-07
pfam03937	51	pfam03937, Sdh5, Flavinator of succinate dehydroge	5e-04

>gnl|CDD|225489 COG2938, COG2938, Uncharacterized conserved protein [Function unknown]

 Score = 83.1 bits (206), Expect = 4e-20
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 235 ERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDW 294
            R  E  + RKARL ++SR RGM E  L+L  FA K  D+++++ L ++++L  L   D 
Sbjct: 5   TRSTEDDDARKARLRWRSR-RGMRELDLILGPFAEKEFDSLSDEELDEFERL--LECEDN 61

Query: 295 DIYYWATGVRPIPLQFNNEVMKLLQDHTKNKDR 327
           D++ W  G    P      +++ +Q   + +D 
Sbjct: 62  DLFNWIMGHGEPPDAELTPMVRKIQARRRIRDP 94

Length = 94

>gnl|CDD|202817 pfam03937, Sdh5, Flavinator of succinate dehydrogenase

 Score = 72.8 bits (180), Expect = 8e-17
 Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 2/53 (3%)

Query: 250 YQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATG 302
           ++S +RGMLE  LLL  FA  +LDT++E+ L  +++L++L   D D++ W TG
Sbjct: 1   WRSWRRGMLELDLLLGRFADAHLDTLSEEELDAFERLLDL--EDPDLFDWLTG 51

This family of uncharacterized proteins. Based on personal observation it was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true.This family is now found to be a highly conserved mitochondrial protein, Sdh5. Both yeast and human Sdh5 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Length = 51

>gnl|CDD|225489 COG2938, COG2938, Uncharacterized conserved protein [Function unknown]

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 15/82 (18%)

Query: 43  RSRGGGRGCR-----LGDF--RHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRP 95
           RSR   RG R     LG F  + +     ++++ L ++++L  L   D D++ W  G   
Sbjct: 21  RSR---RGMRELDLILGPFAEKEF---DSLSDEELDEFERL--LECEDNDLFNWIMGHGE 72

Query: 96  IPLQFNNEVMKLLQDHTKNKDR 117
            P      +++ +Q   + +D 
Sbjct: 73  PPDAELTPMVRKIQARRRIRDP 94

Length = 94

>gnl|CDD|202817 pfam03937, Sdh5, Flavinator of succinate dehydrogenase

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 12/51 (23%)

Query: 49 RGCR-----LGDF--RHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATG 92
          RG       LG F   H      ++E+ L  +++L++L   D D++ W TG
Sbjct: 6  RGMLELDLLLGRFADAHL---DTLSEEELDAFERLLDL--EDPDLFDWLTG 51

This family of uncharacterized proteins. Based on personal observation it was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true.This family is now found to be a highly conserved mitochondrial protein, Sdh5. Both yeast and human Sdh5 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
KOG3326|consensus	154		99.96
COG2938	94	Uncharacterized conserved protein [Function unknow	99.94
KOG3326|consensus	154		99.93
PF03937	74	Sdh5: Flavinator of succinate dehydrogenase; Inter	99.91
COG2938	94	Uncharacterized conserved protein [Function unknow	99.89
PF03937	74	Sdh5: Flavinator of succinate dehydrogenase; Inter	99.79
PRK10878	72	hypothetical protein; Provisional	99.74
PRK10878	72	hypothetical protein; Provisional	99.58

>KOG3326|consensus

Probab=99.96  E-value=1e-29  Score=222.35  Aligned_cols=112  Identities=61%  Similarity=0.970  Sum_probs=108.2

Q ss_pred             CCCCCCCCcccCCCChHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCC
Q psy6101         226 QEPEIPAYQERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRP  305 (341)
Q Consensus       226 ~~~~i~~~~~r~~E~~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~p  305 (341)
                      ..++.|++.+|++|++|++|+||+||||+|||+|+|||||.|+++|+..|+++|+.+|++||+.+++|||||+|+++.++
T Consensus        41 ~~~~~~~~~~r~~e~~etkraRLlYqSrKRGiLEnDLLLs~Fa~~~l~~m~e~~l~~YD~LiN~~~~dWDi~YWaTe~kp  120 (154)
T KOG3326|consen   41 ENLPSPEYPKRPNEPLETKRARLLYQSRKRGILENDLLLSNFAAKNLKKMSEEQLKEYDQLINEESNDWDIYYWATETKP  120 (154)
T ss_pred             ccccCCcccCCCCchhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCcCCchhhhhhccCCC
Confidence            47888999999999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             CCchhhH-HHHHHHHhhhhcccccccccCCCCC
Q psy6101         306 IPLQFNN-EVMKLLQDHTKNKDRQARLRQPDLY  337 (341)
Q Consensus       306 pP~e~~~-~Ii~~Ir~~~~n~~k~~r~~~P~l~  337 (341)
                      +|+.+.+ +|++.+++|++|+.|+.+++||||.
T Consensus       121 ~Pe~~~s~~V~~~L~e~v~n~~r~~~lr~pdl~  153 (154)
T KOG3326|consen  121 PPEKVESSEVFKLLKEFVKNKERVHRLRMPDLA  153 (154)
T ss_pred             CchhhhhHHHHHHHHHHHHhhhhcccccCcccc
Confidence            9999996 9999999999999888899999994

>COG2938 Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=7.1e-27  Score=191.99  Aligned_cols=89  Identities=30%  Similarity=0.521  Sum_probs=85.4

Q ss_pred             cccCCCChHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHH
Q psy6101         234 QERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNE  313 (341)
Q Consensus       234 ~~r~~E~~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~  313 (341)
                      ++|+.+..+.+++||+|||| |||+|||+|||+|+++|+++||++|+++|++||++  +|+|||+|++|+.+||+...++
T Consensus         4 ~~~~~~~~d~~~~RL~~rsr-RGmrElDlil~~Fae~~~~~lsd~el~~f~~LLe~--~D~dL~~Wi~g~~~~~~~~~~~   80 (94)
T COG2938           4 STRSTEDDDARKARLRWRSR-RGMRELDLILGPFAEKEFDSLSDEELDEFERLLEC--EDNDLFNWIMGHGEPPDAELTP   80 (94)
T ss_pred             cccccccCHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CcHHHHHHHhCCCCCCcHHHHH
Confidence            47899999999999999998 99999999999999999999999999999999999  5999999999999999999999


Q ss_pred             HHHHHHhhhhcc
Q psy6101         314 VMKLLQDHTKNK  325 (341)
Q Consensus       314 Ii~~Ir~~~~n~  325 (341)
                      ++++|+++.+..
T Consensus        81 mv~~I~~~~~~~   92 (94)
T COG2938          81 MVRKIQARRRIR   92 (94)
T ss_pred             HHHHHHHHhhhc
Confidence            999999998764

>KOG3326|consensus

Probab=99.93  E-value=9.7e-27  Score=203.70  Aligned_cols=97  Identities=46%  Similarity=0.696  Sum_probs=92.4

Q ss_pred             CCCchhhhhhhhhhc--cchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchH-HHH
Q psy6101          30 KPDLSKVQSQPLDRS--RGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNN-EVM  105 (341)
Q Consensus        30 ~~~ld~rRrRLl~R~--RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t-~Im  105 (341)
                      ...++.+|.||+|++  |||.|. ++||.||++++ .+|+++||.+|++||+.+.||||||||+|+++|+|+.|.+ +||
T Consensus        53 ~e~~etkraRLlYqSrKRGiLEnDLLLs~Fa~~~l-~~m~e~~l~~YD~LiN~~~~dWDi~YWaTe~kp~Pe~~~s~~V~  131 (154)
T KOG3326|consen   53 NEPLETKRARLLYQSRKRGILENDLLLSNFAAKNL-KKMSEEQLKEYDQLINEESNDWDIYYWATETKPPPEKVESSEVF  131 (154)
T ss_pred             CchhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-HhCCHHHHHHHHHHhcCCcCCchhhhhhccCCCCchhhhhHHHH
Confidence            577899999999985  999999 77899999998 9999999999999999999999999999999999999997 999


Q ss_pred             HHHHHhhhcccccccccCCchh
Q psy6101         106 KLLQDHTKNKDRQARLRQPDLY  127 (341)
Q Consensus       106 ~~Ir~f~kn~~k~~r~~~P~L~  127 (341)
                      +.++.|++|++|++++|||+|+
T Consensus       132 ~~L~e~v~n~~r~~~lr~pdl~  153 (154)
T KOG3326|consen  132 KLLKEFVKNKERVHRLRMPDLA  153 (154)
T ss_pred             HHHHHHHHhhhhcccccCcccc
Confidence            9999999999999999999985

>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []

Probab=99.91  E-value=8.4e-25  Score=171.45  Aligned_cols=74  Identities=32%  Similarity=0.590  Sum_probs=65.4

Q ss_pred             HHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHH
Q psy6101         244 RKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQ  319 (341)
Q Consensus       244 rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir  319 (341)
                      +++||+|||+||||+|+|+|||+|+++++++||++|+++|+.||++  +|+|||+|++|+.+||+.....|+++||
T Consensus         1 r~kRl~~r~~rRG~~ElDllL~~f~~~~~~~l~~~el~~fe~lL~~--~D~dL~~wl~g~~~p~~~~~~~li~~ir   74 (74)
T PF03937_consen    1 RRKRLRWRCKRRGMLELDLLLGRFADAHLDSLSEEELDAFERLLDL--EDPDLYDWLMGREEPEDPELAALIEKIR   74 (74)
T ss_dssp             HHHHHHHHHSS-SSHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHTS---HHHHHHHHCTSSEESCHHHHHHHHHHH
T ss_pred             CcHHHHHHhhcccHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHhCCCCCCChhHHHHHHHhC
Confidence            5899999998899999999999999999999999999999999999  5999999999996666555579999886

YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.

>COG2938 Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=4.1e-23  Score=169.79  Aligned_cols=85  Identities=19%  Similarity=0.263  Sum_probs=75.9

Q ss_pred             cCCCCchhhhhhhhhhc-cchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHHH
Q psy6101          28 LMKPDLSKVQSQPLDRS-RGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVM  105 (341)
Q Consensus        28 ~~~~~ld~rRrRLl~R~-RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~Im  105 (341)
                      -++.+.+.+|+||.||+ |||+|| +|||+||++|+ ++||++|+++|++||++  +|+|||+||+|+.++|+.+.++|+
T Consensus         6 ~~~~~~d~~~~RL~~rsrRGmrElDlil~~Fae~~~-~~lsd~el~~f~~LLe~--~D~dL~~Wi~g~~~~~~~~~~~mv   82 (94)
T COG2938           6 RSTEDDDARKARLRWRSRRGMRELDLILGPFAEKEF-DSLSDEELDEFERLLEC--EDNDLFNWIMGHGEPPDAELTPMV   82 (94)
T ss_pred             cccccCHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHcC--CcHHHHHHHhCCCCCCcHHHHHHH
Confidence            34566777777777764 999999 78999999997 99999999999999995  599999999999999999999999


Q ss_pred             HHHHHhhhcc
Q psy6101         106 KLLQDHTKNK  115 (341)
Q Consensus       106 ~~Ir~f~kn~  115 (341)
                      ++|+++.++.
T Consensus        83 ~~I~~~~~~~   92 (94)
T COG2938          83 RKIQARRRIR   92 (94)
T ss_pred             HHHHHHhhhc
Confidence            9999998764

>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []

Probab=99.79  E-value=7.2e-20  Score=143.59  Aligned_cols=70  Identities=23%  Similarity=0.329  Sum_probs=57.6

Q ss_pred             hhhhhhhh--ccchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchH-HHHHHHH
Q psy6101          36 VQSQPLDR--SRGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNN-EVMKLLQ  109 (341)
Q Consensus        36 rRrRLl~R--~RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t-~Im~~Ir  109 (341)
                      ||+|++||  ||||+|+ +|||+|+++++ ++||++|+++|+.||+.+  |+|||+|++|+ ++|+++.. +|+++||
T Consensus         1 r~kRl~~r~~rRG~~ElDllL~~f~~~~~-~~l~~~el~~fe~lL~~~--D~dL~~wl~g~-~~p~~~~~~~li~~ir   74 (74)
T PF03937_consen    1 RRKRLRWRCKRRGMLELDLLLGRFADAHL-DSLSEEELDAFERLLDLE--DPDLYDWLMGR-EEPEDPELAALIEKIR   74 (74)
T ss_dssp             HHHHHHHHHSS-SSHHHHHHHHHHHHHHH-HHS-HHHHHHHHHHHTS---HHHHHHHHCTS-SEESCHHHHHHHHHHH
T ss_pred             CcHHHHHHhhcccHHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHcCC--CHHHHHHHhCC-CCCCChhHHHHHHHhC
Confidence            34555554  6999999 77999999887 999999999999999965  99999999999 66777764 9999886

YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.

>PRK10878 hypothetical protein; Provisional

Probab=99.74  E-value=5.7e-18  Score=133.38  Aligned_cols=68  Identities=16%  Similarity=0.310  Sum_probs=64.4

Q ss_pred             hHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHHhhhhccc
Q psy6101         257 MLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKNKD  326 (341)
Q Consensus       257 mlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir~~~~n~~  326 (341)
                      |+|||+|||+|++++|++||++|++.|++||++  +|+|||+|+||+.+||+.....|+++|+++...++
T Consensus         1 m~ElDlll~~F~~~~~~~l~~~e~~~Fe~LL~~--~D~dL~~W~~g~~~p~d~~l~~iV~~Ir~~~~~~~   68 (72)
T PRK10878          1 MRELDISIMPFFEHEYDSLSDDEKRIFIRLLEC--DDPDLFNWLMNHGKPADAELERMVRLIQTRNRERG   68 (72)
T ss_pred             CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCC
Confidence            799999999999999999999999999999999  59999999999999999999999999999876644

>PRK10878 hypothetical protein; Provisional

Probab=99.58  E-value=3.8e-15  Score=117.45  Aligned_cols=65  Identities=12%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             hhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHHHHHHHHhhhc
Q psy6101          47 GGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQDHTKN  114 (341)
Q Consensus        47 ~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~Im~~Ir~f~kn  114 (341)
                      |+|| +|||+|+++++ ++||++|++.|++||+++  |+|||+|++|+.++|+.....|+++|+++++.
T Consensus         1 m~ElDlll~~F~~~~~-~~l~~~e~~~Fe~LL~~~--D~dL~~W~~g~~~p~d~~l~~iV~~Ir~~~~~   66 (72)
T PRK10878          1 MRELDISIMPFFEHEY-DSLSDDEKRIFIRLLECD--DPDLFNWLMNHGKPADAELERMVRLIQTRNRE   66 (72)
T ss_pred             CchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHcCC--CHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Confidence            6899 77999999886 999999999999999966  99999999999999999999999999997665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	341
2lm4_A	109	Solution Nmr Structure Of Mitochondrial Succinate D		5e-21

>pdb|2LM4|A Chain A, Solution Nmr Structure Of Mitochondrial Succinate Dehydrogenase Assembly Factor 2 From Saccharomyces Cerevisiae, Northeast Structural Genomics Consortium Target Yt682a Length = 109

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 74/98 (75%), Gaps = 6/98 (6%)
Query: 235 ERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDW 294
           +R  EPL+ ++ARL+YQSRKRG+LE  LLLS FAAKYL  MNE+ L++YD L+N    DW
Sbjct: 13  KRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLN--ELDW 70
Query: 295 DIYYWAT---GVRPIPLQF-NNEVMKLLQDHTKNKDRQ 328
           DIYYWAT      P+P ++ N++++K LQ+ ++NK+++
Sbjct: 71  DIYYWATKNFKTSPLPDKWANSKLLKQLQEFSENKEKE 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
2lm4_A	109	Succinate dehydrogenase assembly factor 2, mitoch;	1e-31
2lm4_A	109	Succinate dehydrogenase assembly factor 2, mitoch;	8e-12
1puz_A	82	Conserved hypothetical protein; NMA1147, MR19, str	2e-22
1puz_A	82	Conserved hypothetical protein; NMA1147, MR19, str	2e-07
1x6i_A	91	Hypothetical protein YGFY; structural genomics, tr	8e-22
1x6i_A	91	Hypothetical protein YGFY; structural genomics, tr	2e-08
2jr5_A	94	UPF0350 protein VC_2471; structure, structural gen	1e-21
2jr5_A	94	UPF0350 protein VC_2471; structure, structural gen	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae} Length = 109

 Score =  113 bits (285), Expect = 1e-31
 Identities = 51/98 (52%), Positives = 74/98 (75%), Gaps = 6/98 (6%)

Query: 235 ERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDW 294
           +R  EPL+ ++ARL+YQSRKRG+LE  LLLS FAAKYL  MNE+ L++YD L+N    DW
Sbjct: 13  KRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNE--LDW 70

Query: 295 DIYYWATG---VRPIPLQF-NNEVMKLLQDHTKNKDRQ 328
           DIYYWAT      P+P ++ N++++K LQ+ ++NK+++
Sbjct: 71  DIYYWATKNFKTSPLPDKWANSKLLKQLQEFSENKEKE 108

>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae} Length = 109

 Score = 60.2 bits (146), Expect = 8e-12
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 12/84 (14%)

Query: 43  RSRGGGRGCRLGD--FRHWLSN--SGMNEDLLKQYDQLINLPSNDWDIYYWATG---VRP 95
           +SR   RG    D     + +     MNE+ L++YD L+N    DWDIYYWAT      P
Sbjct: 29  QSRK--RGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNE--LDWDIYYWATKNFKTSP 84

Query: 96  IPLQF-NNEVMKLLQDHTKNKDRQ 118
           +P ++ N++++K LQ+ ++NK+++
Sbjct: 85  LPDKWANSKLLKQLQEFSENKEKE 108

>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1 Length = 82

 Score = 88.5 bits (220), Expect = 2e-22
 Identities = 13/78 (16%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 242 ELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWAT 301
           ++ K ++ +Q+R RG+LE  L+   F  K  + +++  L ++ +++     D ++     
Sbjct: 6   DIAKRKIRFQTR-RGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEF--QDQELLALIN 62

Query: 302 GVRPIPLQFNNEVMKLLQ 319
           G           +++ ++
Sbjct: 63  GHSETDKGHLIPMLEKIR 80

>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1 Length = 82

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 8/74 (10%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 43  RSRGGGRGCR-----LGDF--RHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRP 95
           ++R   RG        G F  + +     +++  L ++ +++     D ++     G   
Sbjct: 15  QTR---RGLLELDLIFGRFMEKEF---EHLSDKELSEFSEILEF--QDQELLALINGHSE 66

Query: 96  IPLQFNNEVMKLLQ 109
                   +++ ++
Sbjct: 67  TDKGHLIPMLEKIR 80

>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A Length = 91

 Score = 87.4 bits (217), Expect = 8e-22
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 242 ELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWAT 301
              KAR+ +  R RGM E  + +  F     D++++D  + + +L+    +D D++ W  
Sbjct: 6   INNKARIHWACR-RGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLEC--DDPDLFNWLM 62

Query: 302 GVRPIPLQFNNEVMKLLQDHTKNK 325
                       +++L+Q   + +
Sbjct: 63  NHGKPADAELEMMVRLIQTRNRER 86

>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A Length = 91

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 43  RSRGGGRGCRLGD--FRHWLSN--SGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPL 98
             R   RG R  D     +  +    +++D  + + +L+    +D D++ W         
Sbjct: 15  ACR---RGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLEC--DDPDLFNWLMNHGKPAD 69

Query: 99  QFNNEVMKLLQDHTKNK 115
                +++L+Q   + +
Sbjct: 70  AELEMMVRLIQTRNRER 86

>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae} Length = 94

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 242 ELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWAT 301
             +KAR+ +  R RGMLE  +++  F  +  D++ E     +  L+    +D D++ W  
Sbjct: 4   AEQKARIKWACR-RGMLELDVVIMPFFEECFDSLTESEQDDFVALLES--DDPDLFAWVM 60

Query: 302 GVRPIPLQFNNEVMKLLQDHTKNKDR 327
           G           ++  +  H  +K R
Sbjct: 61  GHGRCENLGLAAMVDKIVAHNLSKVR 86

>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae} Length = 94

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 9/79 (11%)

Query: 43  RSRGGGRGCRLGD--FRHWLSN--SGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPL 98
             R   RG    D     +       + E     +  L+    +D D++ W  G      
Sbjct: 13  ACR---RGMLELDVVIMPFFEECFDSLTESEQDDFVALLES--DDPDLFAWVMGHGRCEN 67

Query: 99  QFNNEVMKLLQDHTKNKDR 117
                ++  +  H  +K R
Sbjct: 68  LGLAAMVDKIVAHNLSKVR 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 48/373 (12%), Positives = 104/373 (27%), Gaps = 128/373 (34%)

Query: 23  EQHTNLMKPDLSKVQSQP---LDRSRGGGRGCRLGDFRHWLSNSGMNEDLLKQYDQLINL 79
           + +  L +  L +++      +D    G  G   G  + W++      D+   Y     +
Sbjct: 135 QPYLKL-RQALLELRPAKNVLID----GVLGS--G--KTWVAL-----DVCLSYKVQCKM 180

Query: 80  PSNDWDIYYWAT-----GVRPIPLQFNNEVMKLLQDHTKNKDRQARLRQP--DLYETLLT 132
                 I+ W           +       + ++  + T   D  + ++     +   L  
Sbjct: 181 DFK---IF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 133 LQHLGIKFYGSFGIRSRALL-LDRRYCW----LSHFDL-CHGILISSDSNLS-------- 178
           L     K Y         LL L           + F+L C  +L +    ++        
Sbjct: 237 LLKS--KPY------ENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 179 WNVDLEQQSPVYENVEEE----------------------PVLTSLVFCG---------- 206
            ++ L+  S      E +                      P   S++             
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATW 344

Query: 207 -----------SQIVKNSVRSMSKE----------IFPPSQEPEIPA-------YQERVG 238
                      + I+++S+  +             +FPPS    IP        +     
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKS 402

Query: 239 EPL----ELRKARLLYQSRKRGMLE-NGLLLSTFA-AKYLDTMNEDLLKQYDQLINLPSN 292
           + +    +L K  L+ +  K   +    + L      +    ++  ++  Y+      S+
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 293 D-----WDIY-YW 299
           D      D Y Y 
Sbjct: 463 DLIPPYLDQYFYS 475

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 60/395 (15%), Positives = 105/395 (26%), Gaps = 125/395 (31%)

Query: 67  EDLLKQ------YDQLINLPSND-------WDI-------------------YYW-ATGV 93
           +D+ K        D +I             W +                   Y +  + +
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 94  RPIPLQ-------FNNEVMKLLQDHTKNKDRQARLRQP--DLYETLLTLQ-HLGIKFYGS 143
           +    Q       +  +  +L  D+           QP   L + LL L+    +   G 
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 144 FGI----------RSRALL--LDRRYCWLS-------------HFDLCHGI------LIS 172
            G            S  +   +D +  WL+                L + I         
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 173 SDSNLSWNVDLEQ-------QSPVYE-------NVEEEPVLTSLVFCGSQIV-----KNS 213
             SN+   +   Q       +S  YE       NV+      +      +I+     K  
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQV 277

Query: 214 VRSMS-KEIFPPSQEPEIPAYQERVGEPLELRKARLLYQSRKRGMLE-NGLLLSTFAAKY 271
              +S       S +           + L L+      Q   R +L  N   LS  A   
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 272 LDTMNE-DLLKQY--DQLI--------NLPSNDWDIYYWATGVRP----IPLQF------ 310
            D +   D  K    D+L          L   ++   +    V P    IP         
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 311 ---NNEVMKLLQD-HTK---NKDR-QARLRQPDLY 337
               ++VM ++   H      K   ++ +  P +Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
2lm4_A	109	Succinate dehydrogenase assembly factor 2, mitoch;	99.95
1x6i_A	91	Hypothetical protein YGFY; structural genomics, tr	99.94
2jr5_A	94	UPF0350 protein VC_2471; structure, structural gen	99.92
1puz_A	82	Conserved hypothetical protein; NMA1147, MR19, str	99.91
2lm4_A	109	Succinate dehydrogenase assembly factor 2, mitoch;	99.89
2jr5_A	94	UPF0350 protein VC_2471; structure, structural gen	99.88
1x6i_A	91	Hypothetical protein YGFY; structural genomics, tr	99.88
1puz_A	82	Conserved hypothetical protein; NMA1147, MR19, str	99.85

>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.8e-28  Score=204.78  Aligned_cols=93  Identities=54%  Similarity=0.969  Sum_probs=88.9

Q ss_pred             cccCCCChHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCC---CCCCchh
Q psy6101         234 QERVGEPLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGV---RPIPLQF  310 (341)
Q Consensus       234 ~~r~~E~~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~---~ppP~e~  310 (341)
                      .+|++++.+.+++||+|||+||||+|||||||+|+++++++||++|+++|+.||++  +|+|||+|++|+   +++|+++
T Consensus        12 ~~~~~e~~~~rr~RL~~rs~rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~--~D~DL~~wl~g~~~~~~~P~~~   89 (109)
T 2lm4_A           12 IKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNE--LDWDIYYWATKNFKTSPLPDKW   89 (109)
T ss_dssp             CCCCCSCHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTS--CHHHHHHHHTTCTTTSCCCHHH
T ss_pred             ccCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHcC--CCHHHHHHHhCCCCCCCCCchh
Confidence            46999999999999999999999999999999999999999999999999999999  599999999998   8889888


Q ss_pred             h-HHHHHHHHhhhhccccc
Q psy6101         311 N-NEVMKLLQDHTKNKDRQ  328 (341)
Q Consensus       311 ~-~~Ii~~Ir~~~~n~~k~  328 (341)
                      . ++|+++|++++++++|+
T Consensus        90 ~~~~i~~~Ir~~~~~~~~~  108 (109)
T 2lm4_A           90 ANSKLLKQLQEFSENKEKE  108 (109)
T ss_dssp             HTCHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHhccCc
Confidence            6 89999999999999997

>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A

Probab=99.94  E-value=1.2e-27  Score=193.68  Aligned_cols=86  Identities=19%  Similarity=0.294  Sum_probs=80.7

Q ss_pred             ChHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHH
Q psy6101         240 PLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQ  319 (341)
Q Consensus       240 ~~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir  319 (341)
                      ..+.+++||+||| ||||+|||||||+|+++|+++||++|+++|+.||++  +|+|||+|++|+++||++....|+++|+
T Consensus         4 ~~~~~~~RL~~rs-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~--~D~DL~~w~~g~~~~p~~~~~~l~~~I~   80 (91)
T 1x6i_A            4 MDINNKARIHWAC-RRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLEC--DDPDLFNWLMNHGKPADAELEMMVRLIQ   80 (91)
T ss_dssp             CCTTCHHHHHHHT-CCSSHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTS--CHHHHHHHHTTSSBCSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH-HcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence            4456789999999 799999999999999999999999999999999999  5999999999999999999999999999


Q ss_pred             hhhhccccc
Q psy6101         320 DHTKNKDRQ  328 (341)
Q Consensus       320 ~~~~n~~k~  328 (341)
                      +++++++++
T Consensus        81 ~~~~~~~~~   89 (91)
T 1x6i_A           81 TRNRERGPV   89 (91)
T ss_dssp             HHHHHHSCE
T ss_pred             HHHhcCCCC
Confidence            999987655

>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}

Probab=99.92  E-value=5e-26  Score=185.32  Aligned_cols=85  Identities=22%  Similarity=0.360  Sum_probs=79.4

Q ss_pred             hHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHHh
Q psy6101         241 LELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQD  320 (341)
Q Consensus       241 ~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir~  320 (341)
                      .+.+++||+|+| ||||+|||||||+|+++++++||++|+++|++||++  +|+|||+|++|+++||++..+.|+++|++
T Consensus         3 ~~~~~~RL~~~~-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~--~D~DL~~W~~g~~~~p~~~~~~lv~~I~~   79 (94)
T 2jr5_A            3 TAEQKARIKWAC-RRGMLELDVVIMPFFEECFDSLTESEQDDFVALLES--DDPDLFAWVMGHGRCENLGLAAMVDKIVA   79 (94)
T ss_dssp             CHHHHHHHHHHH-CCSSHHHHHTTTTHHHHHTTTCCHHHHHHHHHHHTS--CCHHHHHHHHTCCCCSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcC--CCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            367899999966 699999999999999999999999999999999999  59999999999999999999999999999


Q ss_pred             hhhccccc
Q psy6101         321 HTKNKDRQ  328 (341)
Q Consensus       321 ~~~n~~k~  328 (341)
                      +++++.|.
T Consensus        80 ~~~~~~~~   87 (94)
T 2jr5_A           80 HNLSKVRL   87 (94)
T ss_dssp             HHHHHHHH
T ss_pred             Hhcccchh
Confidence            99876654

>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1

Probab=99.91  E-value=3.2e-25  Score=176.35  Aligned_cols=77  Identities=16%  Similarity=0.387  Sum_probs=73.1

Q ss_pred             hHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHHh
Q psy6101         241 LELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQD  320 (341)
Q Consensus       241 ~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir~  320 (341)
                      .+.+++||+|+| ||||+|+|||||+|+++|+++||++|+++|+.||++  +|+|||+|++|+++||++..+.|+++|++
T Consensus         5 ~~~~~~RL~~~~-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~--~D~DL~~w~~g~~~~p~~~~~~lv~~I~~   81 (82)
T 1puz_A            5 DDIAKRKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEF--QDQELLALINGHSETDKGHLIPMLEKIRR   81 (82)
T ss_dssp             CHHHHHHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTS--CHHHHHHHHHTCSCCSCTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcC--CCHHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence            467899999966 699999999999999999999999999999999999  59999999999999999999999999986

>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.5e-24  Score=177.30  Aligned_cols=88  Identities=34%  Similarity=0.596  Sum_probs=80.1

Q ss_pred             CCCCchhhhhhhhhh--ccchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCC---CCCCccch-
Q psy6101          29 MKPDLSKVQSQPLDR--SRGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGV---RPIPLQFN-  101 (341)
Q Consensus        29 ~~~~ld~rRrRLl~R--~RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~---~p~P~e~~-  101 (341)
                      +..+++.+|+||+||  +|||+|| +|||+||++++ ++||++|+++|++||++  +|+|||+|++|+   +|+|+++. 
T Consensus        15 ~~e~~~~rr~RL~~rs~rRGmlElDllL~~F~~~~~-~~ls~~el~~f~~LL~~--~D~DL~~wl~g~~~~~~~P~~~~~   91 (109)
T 2lm4_A           15 TNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYL-KKMNEEELEEYDSLLNE--LDWDIYYWATKNFKTSPLPDKWAN   91 (109)
T ss_dssp             CCSCHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHTS--CHHHHHHHHTTCTTTSCCCHHHHT
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHcC--CCHHHHHHHhCCCCCCCCCchhhH
Confidence            356788899998887  5999999 77999999887 99999999999999995  599999999997   89999996 


Q ss_pred             HHHHHHHHHhhhcccccc
Q psy6101         102 NEVMKLLQDHTKNKDRQA  119 (341)
Q Consensus       102 t~Im~~Ir~f~kn~~k~~  119 (341)
                      ++|+++|++|++|++|++
T Consensus        92 ~~i~~~Ir~~~~~~~~~~  109 (109)
T 2lm4_A           92 SKLLKQLQEFSENKEKEI  109 (109)
T ss_dssp             CHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhccCcC
Confidence            899999999999999973

>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}

Probab=99.88  E-value=3.1e-23  Score=168.88  Aligned_cols=85  Identities=18%  Similarity=0.124  Sum_probs=72.3

Q ss_pred             CCCCchhhhhhhhhhccchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHHHHH
Q psy6101          29 MKPDLSKVQSQPLDRSRGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKL  107 (341)
Q Consensus        29 ~~~~ld~rRrRLl~R~RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~Im~~  107 (341)
                      |+.+...+|.+|. ++|||+|| +|||+||++++ ++||++|+++|++||+  ++|+|||+|+||++++|+.+.++|+++
T Consensus         1 m~~~~~~~RL~~~-~rRGmlElDllL~~F~~~~~-~~ls~~el~~f~~LL~--~~D~DL~~W~~g~~~~p~~~~~~lv~~   76 (94)
T 2jr5_A            1 MYTAEQKARIKWA-CRRGMLELDVVIMPFFEECF-DSLTESEQDDFVALLE--SDDPDLFAWVMGHGRCENLGLAAMVDK   76 (94)
T ss_dssp             CCCHHHHHHHHHH-HCCSSHHHHHTTTTHHHHHT-TTCCHHHHHHHHHHHT--SCCHHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH-hhcccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHc--CCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            4444444555552 35999999 77999999997 9999999999999999  459999999999999999999999999


Q ss_pred             HHHhhhcccc
Q psy6101         108 LQDHTKNKDR  117 (341)
Q Consensus       108 Ir~f~kn~~k  117 (341)
                      |+++++++-|
T Consensus        77 I~~~~~~~~~   86 (94)
T 2jr5_A           77 IVAHNLSKVR   86 (94)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhcccch
Confidence            9999887443

>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A

Probab=99.88  E-value=4.3e-23  Score=166.93  Aligned_cols=85  Identities=13%  Similarity=0.128  Sum_probs=73.5

Q ss_pred             CCCchhhhhhhhhhccchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHHHHHH
Q psy6101          30 KPDLSKVQSQPLDRSRGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLL  108 (341)
Q Consensus        30 ~~~ld~rRrRLl~R~RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~Im~~I  108 (341)
                      +.+...+|.+|.| ||||+|| +|||+|+++|+ ++||++|+++|++||+  ++|+|||+|+||++++|+.+.++|+++|
T Consensus         4 ~~~~~~~RL~~rs-rRGmlElDllL~~F~~~~~-~~ls~~el~~f~~LL~--~~D~DL~~w~~g~~~~p~~~~~~l~~~I   79 (91)
T 1x6i_A            4 MDINNKARIHWAC-RRGMRELDISIMPFFEHEY-DSLSDDEKRIFIRLLE--CDDPDLFNWLMNHGKPADAELEMMVRLI   79 (91)
T ss_dssp             CCTTCHHHHHHHT-CCSSHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHT--SCHHHHHHHHTTSSBCSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH-HcchHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHc--CCCHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence            3444555555555 5999999 77999999997 9999999999999999  5599999999999999999999999999


Q ss_pred             HHhhhccccc
Q psy6101         109 QDHTKNKDRQ  118 (341)
Q Consensus       109 r~f~kn~~k~  118 (341)
                      +++++++.++
T Consensus        80 ~~~~~~~~~~   89 (91)
T 1x6i_A           80 QTRNRERGPV   89 (91)
T ss_dssp             HHHHHHHSCE
T ss_pred             HHHHhcCCCC
Confidence            9999986443

>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1

Probab=99.85  E-value=6.6e-22  Score=157.29  Aligned_cols=73  Identities=10%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             hhhhhhhhh-ccchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHHHHHHHH
Q psy6101          35 KVQSQPLDR-SRGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQD  110 (341)
Q Consensus        35 ~rRrRLl~R-~RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~Im~~Ir~  110 (341)
                      .+|+||+|+ ||||+|+ +|||+|+++|+ ++||++|+++|++||+  ++|+|||+|++|++++|+++.++|+++|++
T Consensus         7 ~~~~RL~~~~rRGmlElDllL~~F~~~~~-~~ls~~el~~f~~LL~--~~D~DL~~w~~g~~~~p~~~~~~lv~~I~~   81 (82)
T 1puz_A            7 IAKRKIRFQTRRGLLELDLIFGRFMEKEF-EHLSDKELSEFSEILE--FQDQELLALINGHSETDKGHLIPMLEKIRR   81 (82)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHT--SCHHHHHHHHHTCSCCSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHc--CCCHHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence            455555554 5999999 77999999887 9999999999999999  459999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1puza_	82	a.218.1.1 (A:) Hypothetical protein NMA1147 {Neiss	8e-20
d1puza_	82	a.218.1.1 (A:) Hypothetical protein NMA1147 {Neiss	5e-07

>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]} Length = 82

class: All alpha proteins
fold: YgfY-like
superfamily: YgfY-like
family: YgfY-like
domain: Hypothetical protein NMA1147
species: Neisseria meningitidis, mc58 [TaxId: 487]

 Score = 80.2 bits (198), Expect = 8e-20
 Identities = 13/78 (16%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 242 ELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWAT 301
           ++ K ++ +Q+R RG+LE  L+   F  K  + +++  L ++ +++     D ++     
Sbjct: 6   DIAKRKIRFQTR-RGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEF--QDQELLALIN 62

Query: 302 GVRPIPLQFNNEVMKLLQ 319
           G           +++ ++
Sbjct: 63  GHSETDKGHLIPMLEKIR 80

>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]} Length = 82

class: All alpha proteins
fold: YgfY-like
superfamily: YgfY-like
family: YgfY-like
domain: Hypothetical protein NMA1147
species: Neisseria meningitidis, mc58 [TaxId: 487]

 Score = 44.7 bits (106), Expect = 5e-07
 Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 43  RSRGGGRGCRLGD--FRHWLSN--SGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPL 98
           ++R   RG    D  F  ++      +++  L ++ +++     D ++     G      
Sbjct: 15  QTR---RGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEF--QDQELLALINGHSETDK 69

Query: 99  QFNNEVMKLLQ 109
                +++ ++
Sbjct: 70  GHLIPMLEKIR 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1puza_	82	Hypothetical protein NMA1147 {Neisseria meningitid	99.91
d1puza_	82	Hypothetical protein NMA1147 {Neisseria meningitid	99.84

>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}

class: All alpha proteins
fold: YgfY-like
superfamily: YgfY-like
family: YgfY-like
domain: Hypothetical protein NMA1147
species: Neisseria meningitidis, mc58 [TaxId: 487]

Probab=99.91  E-value=4.4e-25  Score=173.32  Aligned_cols=78  Identities=15%  Similarity=0.366  Sum_probs=74.3

Q ss_pred             ChHHHHHhHhhhhcccchHHHHHhHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCchhhHHHHHHHH
Q psy6101         240 PLELRKARLLYQSRKRGMLENGLLLSTFAAKYLDTMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMKLLQ  319 (341)
Q Consensus       240 ~~e~rrkRLrwRcRrRGmlELDLLLg~Fad~~l~~LseeEl~~Fe~LLe~p~~D~DLy~Wl~G~~ppP~e~~~~Ii~~Ir  319 (341)
                      ..+.++|||+||| ||||+|+|+||++|+++++++||++|+.+|++||++  +|+|||+|++|++++|+....+|+++|+
T Consensus         4 ~~d~~~krl~~r~-rRG~kElDllL~~F~~~~~~~l~~~el~~f~~lL~~--~D~dL~~wl~g~~~~p~~~~~~ii~~Ir   80 (82)
T d1puza_           4 FDDIAKRKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEF--QDQELLALINGHSETDKGHLIPMLEKIR   80 (82)
T ss_dssp             CCHHHHHHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTS--CHHHHHHHHHTCSCCSCTTHHHHHHHHH
T ss_pred             ccHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHcC--ChHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            3578899999999 599999999999999999999999999999999999  5999999999999999999999999998


Q ss_pred             h
Q psy6101         320 D  320 (341)
Q Consensus       320 ~  320 (341)
                      +
T Consensus        81 k   81 (82)
T d1puza_          81 R   81 (82)
T ss_dssp             H
T ss_pred             c
Confidence            6

>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}

class: All alpha proteins
fold: YgfY-like
superfamily: YgfY-like
family: YgfY-like
domain: Hypothetical protein NMA1147
species: Neisseria meningitidis, mc58 [TaxId: 487]

Probab=99.84  E-value=9.3e-22  Score=154.19  Aligned_cols=79  Identities=10%  Similarity=0.068  Sum_probs=70.2

Q ss_pred             CCCCchhhhhhhhhh-ccchhHH-HHhHHHHhHhccCCCCHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCccchHHHHH
Q psy6101          29 MKPDLSKVQSQPLDR-SRGGGRG-CRLGDFRHWLSNSGMNEDLLKQYDQLINLPSNDWDIYYWATGVRPIPLQFNNEVMK  106 (341)
Q Consensus        29 ~~~~ld~rRrRLl~R-~RG~kEm-lLLG~FAd~~l~~~LSdeELdeYE~LLd~peND~DLY~WitG~~p~P~e~~t~Im~  106 (341)
                      ||..-+.+|+|++|| ||||+|+ +|||+|+++++ ++||++|+.+|++||+.  +|+|||+|++|++++|+.+.++|++
T Consensus         1 m~~~~d~~~krl~~r~rRG~kElDllL~~F~~~~~-~~l~~~el~~f~~lL~~--~D~dL~~wl~g~~~~p~~~~~~ii~   77 (82)
T d1puza_           1 MMVFDDIAKRKIRFQTRRGLLELDLIFGRFMEKEF-EHLSDKELSEFSEILEF--QDQELLALINGHSETDKGHLIPMLE   77 (82)
T ss_dssp             CCCCCHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHTS--CHHHHHHHHHTCSCCSCTTHHHHHH
T ss_pred             CCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHcC--ChHHHHHHHhCCCCCCcHHHHHHHH
Confidence            455556667777776 4999999 77999999887 99999999999999995  4999999999999999999999999


Q ss_pred             HHHH
Q psy6101         107 LLQD  110 (341)
Q Consensus       107 ~Ir~  110 (341)
                      +|++
T Consensus        78 ~Irk   81 (82)
T d1puza_          78 KIRR   81 (82)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9986