Psyllid ID: psy6109

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MVKPTAVLISGAVQEPVKYPAYKSSTGTCEIPSIQMKEVQLLAGKSLQRTSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Secondary Structure (PSIPRED)
cccccEEEEEcccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccccccccccccccccccccHHHHHHHHHcccHHcccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVKPTAVLISgavqepvkypayksstgtceipsiQMKEVQLLAGKslqrtsagayckdergsttSWQKLRQQSIADQlaevsptcptrktlrlglnlgappdpfepwcisrplglnlRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVgdagvrgtaqqprLFVGMILILIFAEVLGLYGLIVAIYLYTK
Flexible Loop (DISEMBL)
mvkptavlisgavqepvkypayksstgtceiPSIQMKEVQLLAGKSLQRTSAgayckdergsttsWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Low Complexity Region (SEG)
MVKPTAVLISGAVQEPVKYPAYKSSTGTCEIPSIQMKEVQLLAGKSLQRTSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Disordered region (IsUnstruct)
*******LISGAVQEPVKYPAYKSSTGTCEIPSIQMKEVQLLA*****************************************CPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY**
Disordered Region (DISOPRED)
***PTAVLISGAVQEPVKYPAYKSSTGTCEIPSIQMKEVQLLAGKSLQ*T********************QQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT*
Disordered Region (DISEMBL)
MVKPTAVLISGAVQEPVKYPAYKSSTGTCEIPSIQMKEVQLLAGKS*********************KLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Disordered Region (DISPRO)
*VKPTAVLISGAVQEPVKYPAYKSSTGTCEIPSIQMKEVQLLAGKSLQ*************STTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKPTAVLISGAVQEPVKYPAYKSSTGTCEIPSIQMKEVQLLAGKSLQRTSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
P23380	159	V-type proton ATPase 16 k	yes	N/A	0.348	0.421	1.0	2e-30
P31403	156	V-type proton ATPase 16 k	N/A	N/A	0.348	0.429	1.0	3e-30
P55277	156	V-type proton ATPase 16 k	N/A	N/A	0.348	0.429	1.0	3e-30
O16110	157	V-type proton ATPase 16 k	N/A	N/A	0.348	0.426	1.0	3e-30
Q26250	159	V-type proton ATPase 16 k	N/A	N/A	0.348	0.421	0.910	5e-28
P27449	155	V-type proton ATPase 16 k	yes	N/A	0.343	0.425	0.893	2e-25
O18882	155	V-type proton ATPase 16 k	N/A	N/A	0.343	0.425	0.893	2e-25
P63081	155	V-type proton ATPase 16 k	yes	N/A	0.343	0.425	0.893	2e-25
P63082	155	V-type proton ATPase 16 k	yes	N/A	0.343	0.425	0.893	2e-25
P23956	155	V-type proton ATPase 16 k	yes	N/A	0.343	0.425	0.893	2e-25

>sp|P23380|VATL_DROME V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16-1 PE=2 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 93  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 152

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 153 AIYLYTK 159

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Drosophila melanogaster (taxid: 7227)

>sp|P31403|VATL_MANSE V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 89  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 148

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 149 AIYLYTK 155

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. It energizes electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|P55277|VATL_HELVI V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 89  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 148

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 149 AIYLYTK 155

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Heliothis virescens (taxid: 7102)

>sp|O16110|VATL_AEDAE V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 91  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 150

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 151 AIYLYTK 157

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Aedes aegypti (taxid: 7159)

>sp|Q26250|VATL_NEPNO V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 66/67 (98%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GF+H+GAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRL+VGMILILIFAEVLGLYGLIV
Sbjct: 90  GFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIV 149

Query: 186 AIYLYTK 192
           AI+LYTK
Sbjct: 150 AIFLYTK 156

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nephrops norvegicus (taxid: 6829)

>sp|P27449|VATL_HUMAN V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
           F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct: 90  FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query: 187 IYLYTK 192
           + L TK
Sbjct: 150 LILSTK 155

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|O18882|VATL_SHEEP V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
           F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct: 90  FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query: 187 IYLYTK 192
           + L TK
Sbjct: 150 LILSTK 155

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Ovis aries (taxid: 9940)

>sp|P63081|VATL_RAT V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
           F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct: 90  FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query: 187 IYLYTK 192
           + L TK
Sbjct: 150 LILSTK 155

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Rattus norvegicus (taxid: 10116)

>sp|P63082|VATL_MOUSE V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
           F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct: 90  FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query: 187 IYLYTK 192
           + L TK
Sbjct: 150 LILSTK 155

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|P23956|VATL_BOVIN V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
           F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct: 90  FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query: 187 IYLYTK 192
           + L TK
Sbjct: 150 LILSTK 155

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
195429515	159	GK19648 [Drosophila willistoni] gi|19415	0.348	0.421	1.0	9e-29
17136612	159	vacuolar H[+] ATPase subunit 16-1, isofo	0.348	0.421	1.0	1e-28
194758142	159	GF13808 [Drosophila ananassae] gi|190622	0.348	0.421	1.0	1e-28
312374545	190	hypothetical protein AND_15797 [Anophele	0.348	0.352	1.0	1e-28
289739603	158	vacuolar H+-ATPase v0 sector subunits C/	0.348	0.424	1.0	1e-28
401334	156	RecName: Full=V-type proton ATPase 16 kD	0.348	0.429	1.0	1e-28
1718095	156	RecName: Full=V-type proton ATPase 16 kD	0.348	0.429	1.0	1e-28
170050379	157	conserved hypothetical protein [Culex qu	0.348	0.426	1.0	1e-28
224924396	158	vacuolar H+-ATPase V0 sector, subunits c	0.348	0.424	1.0	1e-28
357618562	157	hypothetical protein KGM_13250 [Danaus p	0.348	0.426	1.0	2e-28

>gi|195429515|ref|XP_002062804.1| GK19648 [Drosophila willistoni] gi|194158889|gb|EDW73790.1| GK19648 [Drosophila willistoni]

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 93  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 152

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 153 AIYLYTK 159

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136612|ref|NP_476801.1| vacuolar H[+] ATPase subunit 16-1, isoform A [Drosophila melanogaster] gi|24586010|ref|NP_724474.1| vacuolar H[+] ATPase subunit 16-1, isoform B [Drosophila melanogaster] gi|24586012|ref|NP_724475.1| vacuolar H[+] ATPase subunit 16-1, isoform C [Drosophila melanogaster] gi|24586014|ref|NP_724476.1| vacuolar H[+] ATPase subunit 16-1, isoform D [Drosophila melanogaster] gi|194864080|ref|XP_001970760.1| GG10820 [Drosophila erecta] gi|195331849|ref|XP_002032611.1| GM20869 [Drosophila sechellia] gi|195474127|ref|XP_002089343.1| Vha16 [Drosophila yakuba] gi|195580952|ref|XP_002080298.1| GD10321 [Drosophila simulans] gi|137478|sp|P23380.1|VATL_DROME RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; Short=VHA16K; AltName: Full=Ductin; AltName: Full=Vacuolar H+ ATPase subunit 16-1; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|8812|emb|CAA39449.1| unnamed protein product [Drosophila melanogaster] gi|457731|emb|CAA54908.1| ductin, subunit C proteolipid vacuolar proton channel [Drosophila melanogaster] gi|7302268|gb|AAF57359.1| vacuolar H[+] ATPase subunit 16-1, isoform A [Drosophila melanogaster] gi|7302269|gb|AAF57360.1| vacuolar H[+] ATPase subunit 16-1, isoform C [Drosophila melanogaster] gi|7302270|gb|AAF57361.1| vacuolar H[+] ATPase subunit 16-1, isoform B [Drosophila melanogaster] gi|21626870|gb|AAM68381.1| vacuolar H[+] ATPase subunit 16-1, isoform D [Drosophila melanogaster] gi|38048259|gb|AAR10032.1| similar to Drosophila melanogaster Vha16, partial [Drosophila yakuba] gi|46409108|gb|AAS93711.1| RH30178p [Drosophila melanogaster] gi|190662627|gb|EDV59819.1| GG10820 [Drosophila erecta] gi|194124581|gb|EDW46624.1| GM20869 [Drosophila sechellia] gi|194175444|gb|EDW89055.1| Vha16 [Drosophila yakuba] gi|194192307|gb|EDX05883.1| GD10321 [Drosophila simulans] gi|220951172|gb|ACL88129.1| Vha16-PA [synthetic construct] gi|220959654|gb|ACL92370.1| Vha16-PA [synthetic construct]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 93  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 152

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 153 AIYLYTK 159

Source: Drosophila melanogaster

Species: melanogaster group

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

>gi|194758142|ref|XP_001961321.1| GF13808 [Drosophila ananassae] gi|190622619|gb|EDV38143.1| GF13808 [Drosophila ananassae]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 93  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 152

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 153 AIYLYTK 159

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374545|gb|EFR22081.1| hypothetical protein AND_15797 [Anopheles darlingi]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 124 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 183

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 184 AIYLYTK 190

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289739603|gb|ADD18549.1| vacuolar H+-ATPase v0 sector subunits C/C [Glossina morsitans morsitans]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 92  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 151

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 152 AIYLYTK 158

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|401334|sp|P31403.1|VATL_MANSE RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|9731|emb|CAA46187.1| vacuolar ATPase 16 kD proteolipid subunit [Manduca sexta]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 89  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 148

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 149 AIYLYTK 155

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1718095|sp|P55277.1|VATL_HELVI RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|290956|gb|AAC37176.1| H+-ATPase V-type subunit [Heliothis virescens]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 89  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 148

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 149 AIYLYTK 155

Source: Heliothis virescens

Species: Heliothis virescens

Genus: Heliothis

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050379|ref|XP_001861266.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872018|gb|EDS35401.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 91  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 150

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 151 AIYLYTK 157

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224924396|gb|ACN69148.1| vacuolar H+-ATPase V0 sector, subunits c/c' [Stomoxys calcitrans]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 92  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 151

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 152 AIYLYTK 158

Source: Stomoxys calcitrans

Species: Stomoxys calcitrans

Genus: Stomoxys

Family: Muscidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618562|gb|EHJ71500.1| hypothetical protein KGM_13250 [Danaus plexippus]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 89  GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 148

Query: 186 AIYLYTK 192
           AIYLYTK
Sbjct: 149 AIYLYTK 155

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
FB|FBgn0262736	159	Vha16-1 "Vacuolar H[+] ATPase	0.348	0.421	1.0	1.7e-34
FB|FBgn0028667	158	Vha16-3 "Vacuolar H[+] ATPase	0.348	0.424	0.940	2.4e-28
ZFIN|ZDB-GENE-030131-4127	153	atp6v0cb "ATPase, H+ transport	0.343	0.431	0.909	4e-26
ZFIN|ZDB-GENE-020419-23	154	atp6v0ca "ATPase, H+ transport	0.338	0.422	0.907	1.8e-25
UNIPROTKB|F1P5K5	152	ATP6V0C "Uncharacterized prote	0.343	0.434	0.893	2.9e-25
UNIPROTKB|P23956	155	ATP6V0C "V-type proton ATPase	0.343	0.425	0.893	2.9e-25
UNIPROTKB|F1Q1T0	155	ATP6V0C "Uncharacterized prote	0.343	0.425	0.893	2.9e-25
UNIPROTKB|H3BNI4	112	ATP6V0C "ATPase, H+ transporti	0.343	0.589	0.893	2.9e-25
UNIPROTKB|P27449	155	ATP6V0C "V-type proton ATPase	0.343	0.425	0.893	2.9e-25
UNIPROTKB|F1SUH8	155	ATP6V0C "Uncharacterized prote	0.343	0.425	0.893	2.9e-25

FB|FBgn0262736 Vha16-1 "Vacuolar H[+] ATPase 16kD subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query:   126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
             GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct:    93 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 152

Query:   186 AIYLYTK 192
             AIYLYTK
Sbjct:   153 AIYLYTK 159

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISM;IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0033227 "dsRNA transport" evidence=IMP

GO:0045169 "fusome" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0028667 Vha16-3 "Vacuolar H[+] ATPase 16kD subunit 3" [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 63/67 (94%), Positives = 66/67 (98%)

Query:   126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
             G+IHL AGL+VGF+GLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct:    92 GYIHLAAGLSVGFAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 151

Query:   186 AIYLYTK 192
             AIYLYTK
Sbjct:   152 AIYLYTK 158

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISM;IEA

ZFIN|ZDB-GENE-030131-4127 atp6v0cb "ATPase, H+ transporting, lysosomal, V0 subunit c, b" [Danio rerio (taxid:7955)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 60/66 (90%), Positives = 63/66 (95%)

Query:   127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
             F+HLGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct:    88 FLHLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 147

Query:   187 IYLYTK 192
             + L TK
Sbjct:   148 LILSTK 153

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0034765 "regulation of ion transmembrane transport" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0005245 "voltage-gated calcium channel activity" evidence=IMP

ZFIN|ZDB-GENE-020419-23 atp6v0ca "ATPase, H+ transporting, lysosomal, V0 subunit c, a" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 59/65 (90%), Positives = 62/65 (95%)

Query:   128 IHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 187
             +HLGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+
Sbjct:    89 LHLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 148

Query:   188 YLYTK 192
              L TK
Sbjct:   149 ILSTK 153

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

UNIPROTKB|F1P5K5 ATP6V0C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query:   127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
             F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct:    87 FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 146

Query:   187 IYLYTK 192
             + L TK
Sbjct:   147 LILSTK 152

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

UNIPROTKB|P23956 ATP6V0C "V-type proton ATPase 16 kDa proteolipid subunit" [Bos taurus (taxid:9913)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query:   127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
             F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct:    90 FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query:   187 IYLYTK 192
             + L TK
Sbjct:   150 LILSTK 155

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1Q1T0 ATP6V0C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query:   127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
             F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct:    90 FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query:   187 IYLYTK 192
             + L TK
Sbjct:   150 LILSTK 155

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|H3BNI4 ATP6V0C "ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query:   127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
             F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct:    47 FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 106

Query:   187 IYLYTK 192
             + L TK
Sbjct:   107 LILSTK 112

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P27449 ATP6V0C "V-type proton ATPase 16 kDa proteolipid subunit" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query:   127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
             F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct:    90 FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query:   187 IYLYTK 192
             + L TK
Sbjct:   150 LILSTK 155

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0030670 "phagocytic vesicle membrane" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SUH8 ATP6V0C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query:   127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
             F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA
Sbjct:    90 FLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 149

Query:   187 IYLYTK 192
             + L TK
Sbjct:   150 LILSTK 155

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23380	VATL_DROME	No assigned EC number	1.0	0.3489	0.4213	yes	N/A
P0DH92	VATL1_ARATH	No assigned EC number	0.6842	0.3854	0.4512	yes	N/A
P31403	VATL_MANSE	No assigned EC number	1.0	0.3489	0.4294	N/A	N/A
Q0IUB5	VATL_ORYSJ	No assigned EC number	0.7313	0.3489	0.4060	yes	N/A
P23956	VATL_BOVIN	No assigned EC number	0.8939	0.3437	0.4258	yes	N/A
O16110	VATL_AEDAE	No assigned EC number	1.0	0.3489	0.4267	N/A	N/A
P0DH94	VATL5_ARATH	No assigned EC number	0.6842	0.3854	0.4512	yes	N/A
P59229	VATL4_ARATH	No assigned EC number	0.6842	0.3854	0.4457	yes	N/A
P50515	VATL_SCHPO	No assigned EC number	0.7792	0.4010	0.4782	yes	N/A
P59228	VATL2_ARATH	No assigned EC number	0.6842	0.3854	0.4484	yes	N/A
P55277	VATL_HELVI	No assigned EC number	1.0	0.3489	0.4294	N/A	N/A
Q26250	VATL_NEPNO	No assigned EC number	0.9104	0.3489	0.4213	N/A	N/A
P34546	VATL2_CAEEL	No assigned EC number	0.6867	0.4010	0.4782	yes	N/A
P25515	VATL1_YEAST	No assigned EC number	0.8507	0.3489	0.4187	yes	N/A
P63081	VATL_RAT	No assigned EC number	0.8939	0.3437	0.4258	yes	N/A
P63082	VATL_MOUSE	No assigned EC number	0.8939	0.3437	0.4258	yes	N/A
P27449	VATL_HUMAN	No assigned EC number	0.8939	0.3437	0.4258	yes	N/A
P0DH93	VATL3_ARATH	No assigned EC number	0.6842	0.3854	0.4512	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	192
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	9e-18
COG0636	79	COG0636, AtpE, F0F1-type ATP synthase, subunit c/A	1e-15
TIGR01100	108	TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16	6e-13
PRK06251	102	PRK06251, PRK06251, V-type ATP synthase subunit K;	2e-07
PRK13469	79	PRK13469, PRK13469, F0F1 ATP synthase subunit C; P	2e-06
PRK06271	213	PRK06271, PRK06271, V-type ATP synthase subunit K;	6e-06
PRK14893	161	PRK14893, PRK14893, V-type ATP synthase subunit K;	3e-05
PRK06558	159	PRK06558, PRK06558, V-type ATP synthase subunit K;	9e-05
PRK14893	161	PRK14893, PRK14893, V-type ATP synthase subunit K;	2e-04
PRK06876	78	PRK06876, PRK06876, F0F1 ATP synthase subunit C; V	3e-04
PRK06271	213	PRK06271, PRK06271, V-type ATP synthase subunit K;	4e-04
PRK07354	81	PRK07354, PRK07354, F0F1 ATP synthase subunit C; V	4e-04
CHL00061	81	CHL00061, atpH, ATP synthase CF0 C subunit	6e-04
PRK06271	213	PRK06271, PRK06271, V-type ATP synthase subunit K;	0.002
PRK08344	157	PRK08344, PRK08344, V-type ATP synthase subunit K;	0.002
PRK13471	85	PRK13471, PRK13471, F0F1 ATP synthase subunit C; P	0.004

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 73.3 bits (181), Expect = 9e-18
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 186
              LGAGLA+G + L AG  IGI G A +   A+ P LF  M++    AE L +YGL++A
Sbjct: 1   LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIYGLVIA 60

Query: 187 IYL 189
           + L
Sbjct: 61  LLL 63

Length = 66

>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

 Score = 68.4 bits (168), Expect = 1e-15
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 123 AALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVL 178
           A  G   +GAGLAVG + L AG   GI+G A V   A+QP     LF  M + L   E L
Sbjct: 4   AKKGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEAL 63

Query: 179 GLYGLIVAIYL 189
           G+YGL++A+ L
Sbjct: 64  GIYGLVIALLL 74

Length = 79

>gnl|CDD|130170 TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16 kDa proteolipid subunit

 Score = 61.6 bits (150), Expect = 6e-13
 Identities = 29/30 (96%), Positives = 29/30 (96%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGV 155
           GFIHLGAGLAVG SGLAAGFAIGIVGDAGV
Sbjct: 79  GFIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108

This model describes the vacuolar ATP synthase 16 kDa proteolipid subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells [Transport and binding proteins, Cations and iron carrying compounds]. Length = 108

>gnl|CDD|235752 PRK06251, PRK06251, V-type ATP synthase subunit K; Validated

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 124 ALGF--IHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLY 181
           A GF  I++GAGLAVG + + AG A+G+   AG+    ++  +F  +++ +   E + +Y
Sbjct: 30  AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVY 89

Query: 182 GLIVAIYL 189
           G++ A+ +
Sbjct: 90  GILFAVLM 97

Length = 102

>gnl|CDD|184068 PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGL 180
           +G   +GAG+A   +G+ AG  IGI     V    +QP    ++   M+L    AE   +
Sbjct: 8   MGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAI 66

Query: 181 YGLIVAIYL 189
           YGL++AI L
Sbjct: 67  YGLVIAIIL 75

Length = 79

>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 187
           +GAGLAVG +GL +G   GI G +G    A+ P  F   I+     +  GLYG +VAI
Sbjct: 3   IGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAI 60

Length = 213

>gnl|CDD|184887 PRK14893, PRK14893, V-type ATP synthase subunit K; Provisional

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 185
           G + +GAG A+GF+GL +G   GI   + V    + P +F   I+     E   +YG ++
Sbjct: 90  GLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLI 149

Query: 186 AIYL 189
           AI L
Sbjct: 150 AILL 153

Length = 161

>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVL----GLYGLIV 185
           LGA LAVG SG+ +   +G  G+A      ++P  F G  LIL   ++L    GLYG ++
Sbjct: 19  LGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKF-GKALIL---QLLPGTQGLYGFVI 74

Query: 186 AIYLYTK 192
              ++ K
Sbjct: 75  GFLIWQK 81

Length = 159

>gnl|CDD|184887 PRK14893, PRK14893, V-type ATP synthase subunit K; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 189
           +GAG+AVGF+GL +G   GI     V   A+   +F   I+     E   +YG ++AI L
Sbjct: 13  IGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILL 72

Length = 161

>gnl|CDD|180739 PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL--------FVGMILI---LI 173
           +G   + A +A+G + L A   IG++G   + G A+QP L        F+G  L+    I
Sbjct: 5   MGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPI 64

Query: 174 FAEVLGLY 181
               + L 
Sbjct: 65  IGVGIALL 72

Length = 78

>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 183
           A  +  L AGLAVG +GL+A    GI   AG+   A+   +F   ++  +  E   +YGL
Sbjct: 69  APEWAMLAAGLAVGLAGLSA-IGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGL 127

Query: 184 IVAIYL 189
           +VAI L
Sbjct: 128 LVAILL 133

Length = 213

>gnl|CDD|180942 PRK07354, PRK07354, F0F1 ATP synthase subunit C; Validated

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIV 185
           + A LAVG + +  G   G      V G A+QP    ++   ++L L F E L +YGL+V
Sbjct: 11  VAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVV 70

Query: 186 AIYL 189
           A+ L
Sbjct: 71  ALVL 74

Length = 81

>gnl|CDD|177001 CHL00061, atpH, ATP synthase CF0 C subunit

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIV 185
           + AGLAVG + +  G   G      V G A+QP    ++   ++L L F E L +YGL+V
Sbjct: 11  IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVV 70

Query: 186 AIYL 189
           A+ L
Sbjct: 71  ALAL 74

Length = 81

>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 187
           LGAGLAVGF+GL +G   GI     +  TA+ P      +++ +  E   ++GL++AI
Sbjct: 149 LGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAI 205

Length = 213

>gnl|CDD|236246 PRK08344, PRK08344, V-type ATP synthase subunit K; Validated

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP-RLFVGMILILIFAEVLGLYGLI 184
               LGAGL VG + L +    GI+  +G+    + P + F   I++  +AE++G++GL+
Sbjct: 88  ALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLV 147

Query: 185 VAI 187
            AI
Sbjct: 148 FAI 150

Length = 157

>gnl|CDD|184069 PRK13471, PRK13471, F0F1 ATP synthase subunit C; Provisional

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF----VGMILILIFAEVLGLYGLIV 185
           +GAGL +G   +  G   G +G   +   A+QP +       M+L    AE  G+Y L++
Sbjct: 18  IGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLI 77

Query: 186 AI 187
           A 
Sbjct: 78  AF 79

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PRK06558	159	V-type ATP synthase subunit K; Validated	99.87
PRK08344	157	V-type ATP synthase subunit K; Validated	99.85
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.84
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.82
PRK06271	213	V-type ATP synthase subunit K; Validated	99.81
PRK06649	143	V-type ATP synthase subunit K; Validated	99.73
PRK06271	213	V-type ATP synthase subunit K; Validated	99.71
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.7
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.7
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.69
CHL00061	81	atpH ATP synthase CF0 C subunit	99.68
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.68
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.68
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.67
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.67
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.66
PRK06251	102	V-type ATP synthase subunit K; Validated	99.66
KOG0233|consensus	196		99.65
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.64
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.64
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.64
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.61
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.59
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.57
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.53
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.52
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	99.49
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.48
PRK07874	80	F0F1 ATP synthase subunit C; Validated	99.47
PRK06558	159	V-type ATP synthase subunit K; Validated	99.43
PRK08344	157	V-type ATP synthase subunit K; Validated	99.35
KOG0232|consensus	156		99.23
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.22
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.11
KOG3025|consensus	137		99.06
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	98.97
PRK06649	143	V-type ATP synthase subunit K; Validated	98.69
KOG0233|consensus	196		98.09
KOG0232|consensus	156		95.49
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	89.6
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	88.52
PRK06251	102	V-type ATP synthase subunit K; Validated	85.28
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	82.28

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.87  E-value=7.7e-22  Score=162.13  Aligned_cols=115  Identities=19%  Similarity=0.266  Sum_probs=101.1

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHH
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHL  130 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~l  130 (192)
                      +.|+..|+++       .+.|..|+..+||+++||+|++++++..-+.                    +++++.+++.++
T Consensus        43 ~~~~~a~~Pe-------~~~k~lI~~~l~e~~aIyGlvva~li~~~i~--------------------~~~~~~~g~~~l   95 (159)
T PRK06558         43 AAGLLTEEPE-------KFGKALILQLLPGTQGLYGFVIGFLIWQKIT--------------------PELSLAQGLAYF   95 (159)
T ss_pred             HHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------------ccccHHHHHHHH
Confidence            3455667665       6888899999999999999998777554421                    235677899999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         131 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       131 gAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ++||++|++++++|++||.++++++++++||||+|+++++..+|+|+++||+|+++++++++
T Consensus        96 ~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~  157 (159)
T PRK06558         96 AACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNG  157 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999998875

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.85  E-value=5.1e-21  Score=157.01  Aligned_cols=127  Identities=24%  Similarity=0.405  Sum_probs=105.7

Q ss_pred             cccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHH
Q psy6109          49 RTSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFI  128 (192)
Q Consensus        49 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a  128 (192)
                      .+++|+..||.+       ++.|.+|+..++|+++||+|++++.+....+.....+++.        + .++.++.+++.
T Consensus        27 ~aa~g~~~~~P~-------~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~--------~-~~~~~l~~g~~   90 (157)
T PRK08344         27 SAAAGAVAEDEK-------NFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFA--------E-PDTINLGKALA   90 (157)
T ss_pred             HHHHHHHHhCHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc--------c-ccchhHHHHHH
Confidence            346778888887       7999999999999999999998755554433222222221        0 14567788999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         129 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP-RLFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       129 ~lgAGLavGLa~iGSGIG~G~agsaai~avARqP-eLf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      ++++|+++|++++++|++||+++++++++++||| ++|+++++..+|+|+++||+|+++++++.
T Consensus        91 ~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~  154 (157)
T PRK08344         91 LLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLS  154 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 99999999999999999999999998753

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.84  E-value=1.7e-20  Score=151.84  Aligned_cols=111  Identities=12%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHH
Q psy6109          50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIH  129 (192)
Q Consensus        50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~  129 (192)
                      +++|+..||++       +|.|.++...+||+++||||++++++.--++                    .  +...++..
T Consensus        30 a~~G~~~e~p~-------~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~--------------------~--~~~~~~~~   80 (141)
T PRK09621         30 ASHAVMSRIDE-------GHGKIIGLSAMPSSQSIYGLILMLLLNDAIK--------------------D--GKLSALSG   80 (141)
T ss_pred             HHHHHHHcCch-------hhhhHHHHHHhHHHHHHHHHHHHHHHHHHcc--------------------c--chhHHHHH
Confidence            67888999988       7889999999999999999997777653321                    0  12367899


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6109         130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL  189 (192)
Q Consensus       130 lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLL  189 (192)
                      +++|+++|+++++||++||+++++++++++||||+|+|++++.+++|+++||+|++++++
T Consensus        81 l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll  140 (141)
T PRK09621         81 IAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL  140 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999986

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.82  E-value=7.8e-20  Score=150.65  Aligned_cols=119  Identities=26%  Similarity=0.432  Sum_probs=101.9

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHH
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHL  130 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~l  130 (192)
                      +.++..||++       .++|..|...++|+++||++++++++....+..              +. .+..+..+++.++
T Consensus        37 ~~~~iar~Pe-------~~~~~li~~al~Ea~aIyglvia~lll~~~~~~--------------~~-~~~~~~~~~~~~l   94 (161)
T PRK14893         37 SVGAVAEDSD-------MFARGIIFSALPETQAIYGFLIAILLLVFSGLL--------------GG-GEGLSVTAGLVAI   94 (161)
T ss_pred             HHHHHHcCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------CC-cccchHHHHHHHH
Confidence            4556667665       578899999999999999999887766652211              00 2356677899999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         131 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       131 gAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      ++|+++|++++++|+++|.++++++++++||||.|.+++++.+++|+++||+|++++++++
T Consensus        95 gagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~  155 (161)
T PRK14893         95 GAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMV  155 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998875

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.81  E-value=2e-19  Score=153.57  Aligned_cols=113  Identities=26%  Similarity=0.431  Sum_probs=99.2

Q ss_pred             ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHH
Q psy6109          50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIH  129 (192)
Q Consensus        50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~  129 (192)
                      +++|+.+||++       +|.|.+|..+++|+++||++++++++..-...                     .+..+++.+
T Consensus        97 a~~~a~a~~p~-------~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~---------------------~~~~~g~~~  148 (213)
T PRK06271         97 AGLGAVAEDDS-------IFGKAMVFSVLPETQAIYGLLVAILLLVGVFA---------------------SPGVETIAA  148 (213)
T ss_pred             HHHHHHhcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------------cchhhHHHH
Confidence            46778888877       79999999999999999999987776543210                     022358999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       130 lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      +++|+++|++++ +|++||+++++++++++||||.+.+++++.+|+|+++||+++++++++|
T Consensus       149 ~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~f  209 (213)
T PRK06271        149 LGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIML  209 (213)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 9999999999999999999999999999999999999999999999875

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.73  E-value=3e-17  Score=133.57  Aligned_cols=114  Identities=16%  Similarity=0.141  Sum_probs=96.7

Q ss_pred             ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHH
Q psy6109          50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIH  129 (192)
Q Consensus        50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~  129 (192)
                      +++|...||..+++  =.+|. -+|...++-|++||||++.+++..                        ++++.+++.+
T Consensus        29 Aa~Gv~~~~~~~~~--p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~------------------------~~s~~~g~~~   81 (143)
T PRK06649         29 AAIGAWKRCYMQGK--PAPFL-LIVFVGAPLTQTIYGYILMNTLLG------------------------VMSQTNPWLL   81 (143)
T ss_pred             HHHhHccHhhhcCC--chHHH-HHHHHhchhHHHHHHHHHHHHHHh------------------------hhhhhhHHHH
Confidence            66788887532111  12577 899999999999999986554421                        4456689999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6109         130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY  190 (192)
Q Consensus       130 lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl  190 (192)
                      +++||++|++++.||+.||+++++++++++||||+|+++++..+|+|+++||+|++++++.
T Consensus        82 l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~  142 (143)
T PRK06649         82 LGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999875

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.71  E-value=5.5e-17  Score=138.62  Aligned_cols=109  Identities=27%  Similarity=0.429  Sum_probs=95.0

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHH
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHL  130 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~l  130 (192)
                      +.++..||.+       .+.|-.|...++|+++||++++++++....        |                ...++.++
T Consensus        27 ~~~~~ar~Pe-------~~~~~li~~al~e~~~Iyglvia~ll~~~~--------~----------------~~~g~~~l   75 (213)
T PRK06271         27 GAGVVAEDPN-------KFGTAIVFQALPQTQGLYGFLVAILILFVF--------K----------------TAPEWAML   75 (213)
T ss_pred             HHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------c----------------cHhHHHHH
Confidence            4456667665       577889999999999999999887765541        1                02589999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         131 GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       131 gAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      ++|+++|++++ |++++|.++++++++++||||+|+++++..+|+|+++||||+++++++.
T Consensus        76 gagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~  135 (213)
T PRK06271         76 AAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLV  135 (213)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 7899999999999999999999999999999999999999999999874

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.70  E-value=1e-16  Score=118.88  Aligned_cols=70  Identities=24%  Similarity=0.477  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         123 AALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       123 ~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      +..+.+++++|+++|++++|+|+|+|.++++++++++||||    ++++++++.+++|+++||+|+++++++|.
T Consensus         3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~   76 (78)
T PRK06876          3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA   76 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45678999999999999999999999999999999999998    78899999999999999999999998873

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.70  E-value=1.3e-16  Score=113.16  Aligned_cols=66  Identities=44%  Similarity=0.768  Sum_probs=64.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       127 ~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ++++++|+++|++++++|+|+|.++++++++++||||+|++++++.+|+|+++||+|++++++++|
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~   66 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999999999999999999999999999986

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.69  E-value=1.3e-16  Score=118.02  Aligned_cols=68  Identities=46%  Similarity=0.789  Sum_probs=66.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      .++.++++|+++|++++|+|+++|+++++++++++||||    +|++++++.+|+|+++||+|+++++++|+
T Consensus         6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~   77 (79)
T COG0636           6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFA   77 (79)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            678999999999999999999999999999999999999    99999999999999999999999999874

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.68  E-value=2.6e-16  Score=117.25  Aligned_cols=69  Identities=35%  Similarity=0.557  Sum_probs=64.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ..+++++++|+++|++++|+|+|+|.++++++++++||||    ++++++++++|+|+++||+|+++++++|.
T Consensus         5 ~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~   77 (81)
T CHL00061          5 ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567999999999999999999999999999999999998    77889999999999999999999998863

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.68  E-value=2.3e-16  Score=118.81  Aligned_cols=71  Identities=18%  Similarity=0.242  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         121 KHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       121 ~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      .++..+++++++|+++|++++|+|+|||+++++++++++||||    ++++++++.+++|+++||+|+++++++|
T Consensus         3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf   77 (86)
T TIGR03322         3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIF   77 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999998    5899999999999999999999999876

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.68  E-value=2.8e-16  Score=117.34  Aligned_cols=71  Identities=25%  Similarity=0.323  Sum_probs=66.4

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         121 KHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       121 ~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      .++..+++++++|+++|++++|+|+|||+++++++++++||||    ++++++++.+++|+++||+|+++++++|
T Consensus         2 ~~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllf   76 (82)
T PRK13468          2 LTLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLF   76 (82)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567789999999999999999999999999999999999998    6779999999999999999999999876

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.67  E-value=3.8e-16  Score=117.49  Aligned_cols=70  Identities=29%  Similarity=0.478  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      ++..+.+++++|+++|++++|+|+|+|.++++++++++||||    ++++++++.+++|+++||+|+++++++|
T Consensus        10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf   83 (85)
T PRK13471         10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILL   83 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999999998    6679999999999999999999999886

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.67  E-value=4.6e-16  Score=115.60  Aligned_cols=69  Identities=33%  Similarity=0.527  Sum_probs=64.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ..+++++++|+++|++++|+|+|+|.++++++++++||||    ++++++++.+|+|+++||+|+++++++|.
T Consensus         5 ~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~   77 (81)
T PRK07354          5 TSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567999999999999999999999999999999999999    68888999999999999999999998763

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.66  E-value=7.7e-16  Score=113.96  Aligned_cols=70  Identities=34%  Similarity=0.623  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ++..+++++++|+++ ++++|+|+|+|.++++++++++||||    ++++++++.+|+|+++||+|+++++++|.
T Consensus         5 ~~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~   78 (79)
T PRK13469          5 AFVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV   78 (79)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356789999999999 99999999999999999999999998    78888999999999999999999998873

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.66  E-value=6.7e-16  Score=119.61  Aligned_cols=71  Identities=27%  Similarity=0.584  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      +...+.+++++|+++|++++|+|+|||.++++++++++||||++++++++.+|+|+++||+|+++++++|.
T Consensus        30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~  100 (102)
T PRK06251         30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG  100 (102)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45567889999999999999999999999999999999999999999999999999999999999998763

>KOG0233|consensus

Probab=99.65  E-value=6.6e-17  Score=136.00  Aligned_cols=122  Identities=30%  Similarity=0.482  Sum_probs=103.1

Q ss_pred             ccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHHH
Q psy6109          52 AGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLG  131 (192)
Q Consensus        52 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~lg  131 (192)
                      .|+=.|-.|=+|       |.+|+++|||.++||+++++++    ++.+-+.+++        ++.....++++|+..++
T Consensus        70 iGggVkAPRI~T-------KnLisIIfCEavaiyglI~Aiv----ls~kl~~~~~--------~~~y~~~n~~~gy~lF~  130 (196)
T KOG0233|consen   70 IGGGVKAPRIKT-------KNLISIIFCEAVAIYGLIMAIV----LSTKLENVSS--------SKAYGAQNLYTGYALFG  130 (196)
T ss_pred             ecCcccCCcccc-------cceEEEEeehHHHHHHHHHHHH----HHhhhccCCc--------hhhhccchhhhhHHHhh
Confidence            455567777444       6799999999999999986554    5444444442        23345677889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         132 AGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       132 AGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      +|+.+|++++-+|+++|.+|+++.-++|+||.+|.|.++...|..++++||+++++++..|
T Consensus       131 aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~K  191 (196)
T KOG0233|consen  131 AGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSK  191 (196)
T ss_pred             hhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999999999999999999999999998765

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.64  E-value=1e-15  Score=119.10  Aligned_cols=70  Identities=26%  Similarity=0.483  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      ++..+.+++++|+++|++++|+|+|+|+++++++++++||||    ++++++++.+++|+++||+|+++++++|
T Consensus        26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf   99 (105)
T PRK08482         26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALY   99 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999999999999999999999999999998    8888999999999999999999999887

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.64  E-value=1.1e-15  Score=112.20  Aligned_cols=67  Identities=24%  Similarity=0.420  Sum_probs=64.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      .+.+.+++|+++ ++++|+|+|+|+++++++++++||||    ++++++++.+|+|+++||+|+++++++|.
T Consensus         4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa   74 (74)
T PRK07558          4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA   74 (74)
T ss_pred             hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            467899999999 99999999999999999999999999    99999999999999999999999999874

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.64  E-value=1.4e-15  Score=112.62  Aligned_cols=70  Identities=29%  Similarity=0.405  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ++..+.+++++|+++ ++++|+|+|+|+++++++++++||||    ++++++++.+++|+++||+++++++++|.
T Consensus         3 ~~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa   76 (77)
T MTH00222          3 EILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA   76 (77)
T ss_pred             HHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455678999999999 99999999999999999999999998    99999999999999999999999999873

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.61  E-value=3.9e-15  Score=115.28  Aligned_cols=69  Identities=17%  Similarity=0.428  Sum_probs=65.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ..+...+++|+++|++++|+|+|+|+++++++++++||||    ++++++++.+++|+++||+++++++++|.
T Consensus        11 l~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa   83 (101)
T PRK13464         11 LNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA   83 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998    99999999999999999999999998863

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.59  E-value=1.1e-14  Score=108.83  Aligned_cols=69  Identities=23%  Similarity=0.353  Sum_probs=64.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ..+.+++++|+++|++++|+|+|+|+++++++++++||||    ++++++++.+++|++.+|++++.++++|.
T Consensus         5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~   77 (81)
T PRK05880          5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567999999999999999999999999999999999998    99999999999999999999988887763

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.57  E-value=1.2e-14  Score=112.32  Aligned_cols=66  Identities=26%  Similarity=0.381  Sum_probs=62.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      .++++++|+++ ++++|+|+|+|.++++++++++||||    ++++++++.+++|+++||+|+++++++|.
T Consensus        30 ~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~   99 (100)
T PRK07159         30 KAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV   99 (100)
T ss_pred             hHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46899999999 99999999999999999999999998    78899999999999999999999999873

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.53  E-value=4e-14  Score=102.16  Aligned_cols=57  Identities=28%  Similarity=0.402  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6109         133 GLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYL  189 (192)
Q Consensus       133 GLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLL  189 (192)
                      ++++|++++|+|+|+|+++++++++++||||    ++++++++.+++|+++||+|++++++
T Consensus         5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466          5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5778899999999999999999999999998    99999999999999999999999874

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.52  E-value=4.3e-14  Score=102.11  Aligned_cols=56  Identities=25%  Similarity=0.304  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6109         134 LAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYL  189 (192)
Q Consensus       134 LavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLL  189 (192)
                      ++.|++++|+|+|+|+++++++++++||||    ++++++++.+++|+++||++++++++
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677789999999999999999999998    99999999999999999999999976

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=99.49  E-value=6.7e-14  Score=98.53  Aligned_cols=54  Identities=22%  Similarity=0.426  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         139 SGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       139 a~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      +++|+|+|+|.++++++++++||||    ++++++++.+|+|+++||+++++++++|.
T Consensus         1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa   58 (58)
T TIGR01260         1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA   58 (58)
T ss_pred             CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3679999999999999999999998    69999999999999999999999999874

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.48  E-value=1.6e-13  Score=113.38  Aligned_cols=70  Identities=31%  Similarity=0.613  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      +...+++++++|+++|++++|+++|+|+++++++++++||||.+++++++.+++|+++||+|++++++++
T Consensus         5 ~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~   74 (161)
T PRK14893          5 ALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLV   74 (161)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4446789999999999999999999999999999999999999999999999999999999999999876

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=99.47  E-value=1.9e-13  Score=101.96  Aligned_cols=65  Identities=31%  Similarity=0.550  Sum_probs=56.8

Q ss_pred             cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6109         120 AKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIY  188 (192)
Q Consensus       120 ~~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiL  188 (192)
                      +.++..+.+.+++|    ++++|+|+|+|+++++++++++||||    ++++++++.+++|+++||+|+++++
T Consensus        11 ~~~~~~~~~~ig~G----laaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         11 TETTFTGLGAVGYG----LAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555666666655    55689999999999999999999998    9999999999999999999999987

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.43  E-value=5.8e-13  Score=109.75  Aligned_cols=68  Identities=29%  Similarity=0.595  Sum_probs=65.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ..+.++++++++|++++||++|+|.++++++++.+||||.++|.++..+++|+++||||++++++++|
T Consensus        14 ~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~   81 (159)
T PRK06558         14 AFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQK   81 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999998764

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.35  E-value=3e-12  Score=105.34  Aligned_cols=64  Identities=30%  Similarity=0.596  Sum_probs=61.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6109         127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY  190 (192)
Q Consensus       127 ~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl  190 (192)
                      +..+++++++|++++|+++|+|.++++++++.+||||+++++++..+++|+++||||+++++++
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~   65 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLIL   65 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999987653

>KOG0232|consensus

Probab=99.23  E-value=1.3e-11  Score=101.94  Aligned_cols=106  Identities=58%  Similarity=0.837  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6109          70 RQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGI  149 (192)
Q Consensus        70 ~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~lgAGLavGLa~iGSGIG~G~  149 (192)
                      -+.+|+++++-...||+++.+.++.--++       |         . .+.++.++++..+++|+.+|++++++|+++|.
T Consensus        48 mkSiiPvVmAgii~iYglv~av~i~g~i~-------~---------~-~~~~~l~~g~i~lsagl~vgl~~~~ag~aigi  110 (156)
T KOG0232|consen   48 MKSIIPVVMAGIITIYGLVVAVVISGDIG-------P---------K-GTAYSLFTGFIVLSAGLAVGLAGLSAGLAIGI  110 (156)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcccccC-------C---------c-ccccchhhHHHHHHHHHHhhhcccCCCcCcCc
Confidence            48999999999999999965444332221       1         0 12267889999999999999999999999999


Q ss_pred             HHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         150 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       150 agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ++.+.....+|||++|..+++.++|.|.+++|||++++.+.++
T Consensus       111 ~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~  153 (156)
T KOG0232|consen  111 VGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTV  153 (156)
T ss_pred             cccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999988764

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.22  E-value=4.4e-11  Score=97.11  Aligned_cols=66  Identities=20%  Similarity=0.309  Sum_probs=62.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      .+.+++++++++++++||++|++.+|+++.....|+||.|.+.++..+++|+++||||+++++++.
T Consensus         3 ~~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~   68 (141)
T PRK09621          3 DMSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLND   68 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            366799999999999999999999999999999999999999999999999999999999999875

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.11  E-value=2.9e-10  Score=88.97  Aligned_cols=66  Identities=27%  Similarity=0.460  Sum_probs=60.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       127 ~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      +.+++++++++++++||++|++.++.+-..+-.++||++.|.+|..+|+|+++||||+++++++.|
T Consensus         2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~   67 (108)
T TIGR01100         2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGS   67 (108)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            568899999999999999999999977777667779999999999999999999999999998864

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>KOG3025|consensus

Probab=99.06  E-value=2.8e-10  Score=91.24  Aligned_cols=71  Identities=30%  Similarity=0.421  Sum_probs=66.7

Q ss_pred             cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         120 AKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       120 ~~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      +.++..+.+++|+|+++ ++..|+|.|+|.+.++.+.+.+|||+    +|...++++++.|++++|+|.++|+++|
T Consensus        61 s~~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilf  135 (137)
T KOG3025|consen   61 SRDIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  135 (137)
T ss_pred             HHHHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45677899999999998 88889999999999999999999996    8999999999999999999999999987

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=98.97  E-value=8.2e-10  Score=86.44  Aligned_cols=69  Identities=45%  Similarity=0.621  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy6109          68 KLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAI  147 (192)
Q Consensus        68 ~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~lgAGLavGLa~iGSGIG~  147 (192)
                      ++.|.+|+++|||+++||+|++++++..-++.                  .+++++.+++.++++||++|++++.||+.|
T Consensus        39 ~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~------------------~~~~s~~~g~~~~~aGL~vGl~~l~sgi~~  100 (108)
T TIGR01100        39 LIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKP------------------KSNYSLYKGFIHLGAGLAVGLSGLAAGFAI  100 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------------------ccccCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987776554321                  123678899999999999999999999999


Q ss_pred             HHHHHHH
Q psy6109         148 GIVGDAG  154 (192)
Q Consensus       148 G~agsaa  154 (192)
                      |.++++.
T Consensus       101 Gi~G~~g  107 (108)
T TIGR01100       101 GIVGDAG  107 (108)
T ss_pred             cccccCC
Confidence            9998754

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=98.69  E-value=6.2e-08  Score=79.31  Aligned_cols=63  Identities=24%  Similarity=0.417  Sum_probs=59.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6109         127 FIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQ-----QPRLFVGMILILIFAEVLGLYGLIVAIYLY  190 (192)
Q Consensus       127 ~a~lgAGLavGLa~iGSGIG~G~agsaai~avAR-----qPeLf~k~iIg~Af~EaiaIyGLVVAiLLl  190 (192)
                      +.++|++++++++++||++|+|.+|.++...+.+     |||.|. .++..+++-+++||||+++++++
T Consensus         3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~   70 (143)
T PRK06649          3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLL   70 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999998     999998 99999999999999999999876

>KOG0233|consensus

Probab=98.09  E-value=2.4e-07  Score=78.61  Aligned_cols=68  Identities=35%  Similarity=0.584  Sum_probs=64.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      .-|+.+|.+++++++.+|+++|+=..|++-+++--|-|++.+|.++...|||+.+|||+++++++..|
T Consensus        40 ~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~k  107 (196)
T KOG0233|consen   40 YMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTK  107 (196)
T ss_pred             hHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhh
Confidence            35889999999999999999999999999999999999999999999999999999999999998765

>KOG0232|consensus

Probab=95.49  E-value=0.066  Score=44.86  Aligned_cols=66  Identities=27%  Similarity=0.446  Sum_probs=58.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      -+...+++.++-++++|++.|....+..-...--.+||+-.|.++-..++-.++|||++++.++..
T Consensus         8 ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g   73 (156)
T KOG0232|consen    8 FFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISG   73 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence            356778888888999999999999998888888899999999999999999999999998887653

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=89.60  E-value=0.18  Score=35.59  Aligned_cols=36  Identities=17%  Similarity=0.086  Sum_probs=29.2

Q ss_pred             ccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Q psy6109          52 AGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLG   94 (192)
Q Consensus        52 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~   94 (192)
                      .++..|+++       .+.+-.|..+++|+++||+++.++++.
T Consensus        29 ~~~~a~~p~-------~~~~~li~~~~~E~~~i~glv~~~~l~   64 (66)
T PF00137_consen   29 IGAIARQPE-------LFTKMLIGAAFIEALGIYGLVVALLLL   64 (66)
T ss_dssp             HHHHHHSGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccc-------cchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            345556665       689999999999999999999877754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=88.52  E-value=0.24  Score=36.72  Aligned_cols=43  Identities=14%  Similarity=0.025  Sum_probs=34.7

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN   96 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~   96 (192)
                      ...+++||++=.++   .|.+-.+...|+|+.++|++++++++.+.
T Consensus        35 ~~~~~Ar~P~~~~~---l~~~~~i~~~l~E~~~i~~lvialll~f~   77 (79)
T COG0636          35 AVEAVARQPEAAGK---LFGKMFIGLALVEALGIYGLVIALLLLFA   77 (79)
T ss_pred             HHHHHHcCcchhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45678888884442   68888999999999999999988876654

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=85.28  E-value=0.41  Score=37.50  Aligned_cols=38  Identities=8%  Similarity=-0.033  Sum_probs=29.9

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGL   95 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~   95 (192)
                      +.++..|+++       .+.+.+|...++|+.+||+|++++++.+
T Consensus        62 ai~aiAr~Pe-------~~g~~ii~~al~Ea~aIyglvVa~lLlf   99 (102)
T PRK06251         62 GIGVLTERRD-------MFGTVLIFVAIGEGIAVYGILFAVLMLF   99 (102)
T ss_pred             HHHHHHcChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445666554       6888999999999999999998887653

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=82.28  E-value=0.67  Score=35.16  Aligned_cols=44  Identities=14%  Similarity=0.058  Sum_probs=32.7

Q ss_pred             ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109          50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN   96 (192)
Q Consensus        50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~   96 (192)
                      .+.++.+|+..-..   |-+.+-.|...+.|+.+||+|++++++.+.
T Consensus        41 ~a~~avaRqPe~~g---~l~~~~~ig~aL~Ea~~iy~lvva~lllf~   84 (85)
T PRK13471         41 HAMDAMARQPEMVG---TITTRMLLADAVAETTGIYSLLIAFLILLV   84 (85)
T ss_pred             HHHHHHHcChHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567777755332   146677899999999999999988877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	7e-24
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	6e-09
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	1e-09
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	3e-09
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	1e-07
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	2e-07
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	1e-05
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	1e-04
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	1e-04

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A* Length = 156

 Score = 91.1 bits (226), Expect = 7e-24
 Identities = 22/77 (28%), Positives = 34/77 (44%)

Query: 116 NLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFA 175
           NL        G   LGA L + F+GL +G A G V  AG++  A++P      I+     
Sbjct: 79  NLGSDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMV 138

Query: 176 EVLGLYGLIVAIYLYTK 192
           E   + G +++  L   
Sbjct: 139 ETYAILGFVISFLLVLN 155

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A* Length = 156

 Score = 51.8 bits (124), Expect = 6e-09
 Identities = 18/71 (25%), Positives = 33/71 (46%)

Query: 122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLY 181
           +  + F  L    A  FSG+ +   +G+ G+A    T  QP  F   +++ +     GLY
Sbjct: 9   NGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLY 68

Query: 182 GLIVAIYLYTK 192
           G ++A  ++  
Sbjct: 69  GFVIAFLIFIN 79

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A Length = 82

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLG 179
                 + A LAVG   +  G   G      V G A+QP    ++   ++L L F E L 
Sbjct: 6   TTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALT 65

Query: 180 LYGLIVAIYL 189
           +YGL+VA+ L
Sbjct: 66  IYGLVVALVL 75

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP} Length = 72

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGL 180
           +    L A +AVG   L AG   G++    + G A+QP     L   M + +   E L +
Sbjct: 1   MSLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPI 60

Query: 181 YGLIVAIYLYTK 192
            G++ +     +
Sbjct: 61  IGVVFSFIYLGR 72

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A* Length = 89

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 115 LNLRKAKHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMIL 170
           +++  AK   L    +GAG A+  +G+  G   G      V   A+QP     +   M+L
Sbjct: 1   MDMLFAKTVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVL 59

Query: 171 ILIFAEVLGLYGLIVAIYL 189
               AE  G+Y L++A+ L
Sbjct: 60  GQAVAESTGIYSLVIALIL 78

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4} Length = 69

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIV 185
           LGA +A G + +A   A+ I+  A + GT +QP     L   M + +  AE + +  +++
Sbjct: 4   LGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVI 63

Query: 186 AIYL 189
           ++ +
Sbjct: 64  SLLI 67

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A Length = 79

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLG 179
            +  +++ A + +G + + A   IGI+G   + G A+QP     L     +++   + + 
Sbjct: 5   NMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIP 64

Query: 180 LYGLIVAIYL 189
           +  + + +Y+
Sbjct: 65  MIAVGLGLYV 74

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K* Length = 76

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIV 185
           +GAG++     L AG  I IV  A + G ++ P     +F   IL    +E  GL+ L+V
Sbjct: 10  IGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMV 68

Query: 186 AIYL 189
           +  L
Sbjct: 69  SFLL 72

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus} Length = 72

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIV 185
           +GAG A       +G  IG V  + + G A+ P    +LF   IL    +E +GL+ L+V
Sbjct: 8   IGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMV 66

Query: 186 AIYL 189
           A  +
Sbjct: 67  AFLI 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.88
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.73
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.7
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.69
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.68
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.67
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.65
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.59
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.41
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	89.99
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	88.14
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	87.92
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	87.64
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	84.94
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	83.25

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.88  E-value=8.1e-23  Score=166.10  Aligned_cols=116  Identities=24%  Similarity=0.347  Sum_probs=103.7

Q ss_pred             ccccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHhcCCCCCCCCcccccccccccccccchHHHHHHH
Q psy6109          50 TSAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLNLGAPPDPFEPWCISRPLGLNLRKAKHAALGFIH  129 (192)
Q Consensus        50 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~l~~~~~~~~p~~~s~~~~~~~~~~~s~~~g~a~  129 (192)
                      +.+|+..||++       .+.|.+|++.+||+++||++++++++...++                    .+.++.+++++
T Consensus        40 a~~g~~~~~P~-------~~~k~li~~~l~e~~~IYGlvva~li~~~l~--------------------~~~~~~~g~~~   92 (156)
T 2bl2_A           40 AAAALTTSQPE-------KFGQALILQLLPGTQGLYGFVIAFLIFINLG--------------------SDMSVVQGLNF   92 (156)
T ss_dssp             HHHHHHTTCGG-------GHHHHHHHHHGGGHHHHHHHHHHHHHHHTCC--------------------TTCCHHHHHHH
T ss_pred             HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------cchhHHHHHHH
Confidence            45677778877       6889999999999999999998888766432                    12456789999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         130 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       130 lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      +++|+++|++++|+|++||+++++++++++||||++++++++.+|+|+++||+|+++++++++
T Consensus        93 igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~  155 (156)
T 2bl2_A           93 LGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999863

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.73  E-value=1.6e-17  Score=122.36  Aligned_cols=71  Identities=32%  Similarity=0.523  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ++..+++++++|+++|++++|+|+|+|+++++++++++||||    +|++++++.+|+|+++||+|+++++++|.
T Consensus         4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~   78 (82)
T 2xqu_A            4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFA   78 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            457899999999999999999999999999999999999999    78889999999999999999999998763

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.70  E-value=4.2e-17  Score=117.50  Aligned_cols=67  Identities=27%  Similarity=0.476  Sum_probs=63.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      +++++++|+++|++++|+|+|+|+++++++++++||||    +|++++++.+|+|+++||+|+++++++|.
T Consensus         2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf~   72 (72)
T 1wu0_A            2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR   72 (72)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999    77779999999999999999999999873

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.69  E-value=9.6e-17  Score=114.78  Aligned_cols=63  Identities=27%  Similarity=0.510  Sum_probs=60.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         129 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       129 ~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      ++++|+++|++++|+|+|+|+++++++++++||||    +|++++++.+|+|+++||+|+++++++|
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   69 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            58999999999999999999999999999999999    6677999999999999999999999875

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.68  E-value=1.3e-16  Score=119.16  Aligned_cols=71  Identities=31%  Similarity=0.517  Sum_probs=67.0

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         121 KHAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       121 ~s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      .++.++++++++|+++ ++++|+|+|+|+++++++++++||||    +|++++++.+|+|+++||+|+++++++|.
T Consensus         7 ~~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   81 (89)
T 2wgm_A            7 KTVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYA   81 (89)
T ss_dssp             HHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999 99999999999999999999999999    69999999999999999999999998763

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.67  E-value=3e-16  Score=115.01  Aligned_cols=66  Identities=20%  Similarity=0.482  Sum_probs=62.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      .+..+++++++|++++|+|+|+|+++++++++++||||    +|++++++.+|+|+++||+|+++++++|
T Consensus         7 ~m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf   76 (79)
T 1a91_A            7 DLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMF   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999    8889999999999999999999999876

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.65  E-value=4.1e-16  Score=114.35  Aligned_cols=69  Identities=32%  Similarity=0.474  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         122 HAALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       122 s~~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      ++..+.+++++|+++ ++.+|+|+|+|+++++++++++||||    +|+++++++++.|+++||+|+++++++|
T Consensus         2 ~lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllF   74 (76)
T 4f4s_A            2 QLVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF   74 (76)
T ss_dssp             HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456789999999999 99999999999999999999999997    9999999999999999999999999987

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.59  E-value=2e-16  Score=114.05  Aligned_cols=65  Identities=32%  Similarity=0.450  Sum_probs=61.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         126 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       126 g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      +++++++|+++ ++++|+|+|+|+++++++++++||||    +|++++++.+|+|+++||+|+++++++|
T Consensus         4 ~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf   72 (72)
T 2xnd_J            4 AAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF   72 (72)
T ss_dssp             TTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            46788999999 99999999999999999999999998    7889999999999999999999999875

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.41  E-value=5.2e-13  Score=108.42  Aligned_cols=68  Identities=26%  Similarity=0.540  Sum_probs=65.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6109         125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK  192 (192)
Q Consensus       125 ~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPeLf~k~iIg~Af~EaiaIyGLVVAiLLl~k  192 (192)
                      ..+.+++++++++++++|+++|++.++++++++.+||||+++|+++..+|+|+++||||+++++++++
T Consensus        12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~   79 (156)
T 2bl2_A           12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFIN   79 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999999999999999999999999999999999999999999998764

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=89.99  E-value=0.12  Score=36.66  Aligned_cols=41  Identities=10%  Similarity=-0.056  Sum_probs=31.9

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLG   94 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~   94 (192)
                      +.++++|+++.+.   |-+.+.+|...|+|+.+||++++++++.
T Consensus        30 ~~~~~arqPe~~~---~l~~~~ii~~al~Ea~ai~~lvia~lll   70 (72)
T 1wu0_A           30 TIEGIARQPELRP---VLQTTMFIGVALVEALPIIGVVFSFIYL   70 (72)
T ss_dssp             HHHHHHTSSTTTT---HHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777544   2477789999999999999999888764

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=88.14  E-value=0.2  Score=36.10  Aligned_cols=43  Identities=12%  Similarity=-0.065  Sum_probs=33.3

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN   96 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~   96 (192)
                      +..+++|+++-+.   |-+.+..|..+|+|+.+||+|++++++.+.
T Consensus        35 ~i~~~arqPe~~~---~l~~~~ii~~al~Ea~ai~glvia~lllf~   77 (79)
T 1a91_A           35 FLEGAARQPDLIP---LLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHTTSCSSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456777777444   246678999999999999999998887654

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=87.92  E-value=0.14  Score=36.05  Aligned_cols=41  Identities=15%  Similarity=0.004  Sum_probs=30.5

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLG   94 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~   94 (192)
                      +..+++|+++-+.   |-+.+..|..+|+|+.+||++++++++.
T Consensus        28 ~i~~~arqPe~~~---~l~~~~ii~~al~Ea~ai~~lvia~lll   68 (69)
T 2x2v_A           28 TIEGTTRQPELRG---TLQTLMFIGVPLAEAVPIIAIVISLLIL   68 (69)
T ss_dssp             HHHHHHHCGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677766322   2456689999999999999999887753

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=87.64  E-value=0.12  Score=37.38  Aligned_cols=43  Identities=7%  Similarity=-0.035  Sum_probs=33.2

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN   96 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~   96 (192)
                      +.++++|+++-+.   |-+.+.+|..+|+|+.+||++++++++.+.
T Consensus        36 ~i~a~arqPe~~~---~l~~~~ii~~al~Ea~ai~glvia~ll~f~   78 (82)
T 2xqu_A           36 AVEGIARQPEAEG---KIRGTLLLSLAFMEALTIYGLVVALVLLFA   78 (82)
T ss_dssp             HHHHHHHCGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCchHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556777776333   247788999999999999999998887654

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=84.94  E-value=0.21  Score=36.80  Aligned_cols=43  Identities=9%  Similarity=0.075  Sum_probs=33.6

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHh
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRLGLN   96 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil~~~   96 (192)
                      +..+++|+.+-+.   |-+.+..|..+|+|+.+||++++++++.+.
T Consensus        39 ai~a~arqPe~~~---~l~~~~ii~~al~Ea~ai~glvia~lllf~   81 (89)
T 2wgm_A           39 AVESVARQPEAKG---DIISTMVLGQAVAESTGIYSLVIALILLYA   81 (89)
T ss_dssp             HHHHHHHCGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCchHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777776433   248889999999999999999998887654

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=83.25  E-value=0.21  Score=35.43  Aligned_cols=40  Identities=8%  Similarity=-0.039  Sum_probs=30.0

Q ss_pred             cccceeecCCCCcchHHHHHHHHHHHHHHhhcCchhhHHHHHH
Q psy6109          51 SAGAYCKDERGSTTSWQKLRQQSIADQLAEVSPTCPTRKTLRL   93 (192)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~e~~~I~g~i~~iil   93 (192)
                      +..+++|+++-+..   -+.+..|...|+|+.++|+|++++++
T Consensus        31 ~i~~~arqPe~~~~---l~~~~~i~~al~Ea~~i~~lvia~ll   70 (72)
T 2xnd_J           31 LIIGYARNPSLKQQ---LFSYAILGFALSEAMGLFCLMVAFLI   70 (72)
T ss_dssp             HHHHSSSCSCCCCC---CSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCcHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566676653331   36778999999999999999987765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1c99a_	79	f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escheri	1e-16

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Length = 79

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

 Score = 68.8 bits (169), Expect = 1e-16
 Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 125 LGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGL 180
           +  +++ A + +G + + A   IGI+G   + G A+QP     L     +++   + + +
Sbjct: 6   MDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPM 65

Query: 181 YGLIVAIYL 189
             + + +Y+
Sbjct: 66  IAVGLGLYV 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.71

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.4e-17  Score=119.80  Aligned_cols=68  Identities=19%  Similarity=0.480  Sum_probs=65.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCch----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6109         124 ALGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR----LFVGMILILIFAEVLGLYGLIVAIYLYT  191 (192)
Q Consensus       124 ~~g~a~lgAGLavGLa~iGSGIG~G~agsaai~avARqPe----Lf~k~iIg~Af~EaiaIyGLVVAiLLl~  191 (192)
                      ..++.++++|+++|++++|+|+|+|++++++++++|||||    ++++++++.++.|+++||+++++++++|
T Consensus         5 ~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillF   76 (79)
T d1c99a_           5 NMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMF   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999997    9999999999999999999999999987