Psyllid ID: psy6141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MKSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccEEccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHEEEEHHHHHHHHHHHcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHEEEEEEEEEEEEcccccccccccccccEEEcc
Coil and Loop (DISEMBL)
MKSAVLASLTVSLGSMIVGFAsaytspaipsmnqmgsrvspteeeaswigslmplsalfggmaggplieslgrrttilstglpFIVSFLLIALANGVPMILAGRCVAGFCVGIASLalpvylgetvqpevrgtlgllptflgni
Flexible Loop (DISEMBL)
MKSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETvqpevrgtlgllptflgni
Low Complexity Region (SEG)
MKSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNI
Disordered region (IsUnstruct)
*****LASLTVSLGSMIVGFASAYT*********************SWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL***
Disordered Region (DISOPRED)
MKSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNI
Disordered Region (DISEMBL)
MKSAVLASLTVSLGSMIVGFASAYTSPAIPS***************SWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNI
Disordered Region (DISPRO)
MKSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNI
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
B4HNS0	857	Facilitated trehalose tra	N/A	N/A	0.986	0.165	0.671	9e-47
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.986	0.274	0.643	3e-45
B4QBN3	488	Facilitated trehalose tra	N/A	N/A	0.986	0.290	0.678	4e-45
B4HNS1	488	Facilitated trehalose tra	N/A	N/A	0.986	0.290	0.671	1e-44
Q8MKK4	488	Facilitated trehalose tra	yes	N/A	0.986	0.290	0.671	1e-44
B4J913	929	Facilitated trehalose tra	N/A	N/A	0.986	0.152	0.678	4e-44
A5LGM7	504	Facilitated trehalose tra	N/A	N/A	0.986	0.281	0.671	7e-44
Q291H8	868	Facilitated trehalose tra	yes	N/A	0.986	0.163	0.685	8e-44
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.986	0.163	0.685	8e-44
A1Z8N1	857	Facilitated trehalose tra	no	N/A	0.986	0.165	0.671	4e-43

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score =  185 bits (469), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 114/143 (79%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGG 61
           + VLA+L+VSLGS++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+AL GG
Sbjct: 395 TQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAALAGG 454

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGPLIE LGRR TIL+T +PFIVS LLIA A  V M+L GR +AGFCVGIASL+LPVY
Sbjct: 455 ITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVY 514

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 515 LGETVQPEVRGTLGLLPTAFGNI 537

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Drosophila sechellia (taxid: 7238)

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 113/143 (79%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGG 61
           S VLA+L+VSLGSM+VGF+SAYTSPA+ SM     +    T++  SW+G +MPL+ L GG
Sbjct: 55  SQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVGG 114

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGPLIE LGR+ TIL+T  PFI+S+LLIA A  V M+L GR ++GF VG+ASL+LPVY
Sbjct: 115 ILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVY 174

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 175 LGETVQPEVRGTLGLLPTAFGNI 197

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Culex quinquefasciatus (taxid: 7176)

>sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1

 Score =  179 bits (455), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 116/143 (81%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGG 61
           S VLA+L+VSL S++VGF SAYTSPA+ SM ++  +    T++  SW+G +MPL+AL GG
Sbjct: 27  SQVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGG 86

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGPLIE LGRRTTIL+T +PFIVS LLIA A  V MIL GR + GFCVGIASL+LPVY
Sbjct: 87  ITGGPLIEYLGRRTTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVY 146

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGET+QPEVRGTLGLLPT LGNI
Sbjct: 147 LGETLQPEVRGTLGLLPTALGNI 169

Fails to transport trehalose.

Drosophila simulans (taxid: 7240)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 115/143 (80%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGG 61
           S VLA+L+VSL S++VGF SAYTSPA+ SM ++  +    T++  SW+G +MPL+AL GG
Sbjct: 27  SQVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGG 86

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGPLIE LGRR TIL+T +PFIVS LLIA A  V MIL GR + GFCVGIASL+LPVY
Sbjct: 87  ITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVY 146

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGET+QPEVRGTLGLLPT LGNI
Sbjct: 147 LGETLQPEVRGTLGLLPTALGNI 169

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 116/143 (81%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGG 61
           S VLA+L+VSL S++VGF SAYTSPA+ SM ++  +    T++  SW+G +MPL+AL GG
Sbjct: 27  SQVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGG 86

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGPLIE LGRR+TIL+T +PFIVS LLIA A  V MIL GR + GFCVGIASL+LPVY
Sbjct: 87  ITGGPLIEYLGRRSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVY 146

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGET+QPEVRGTLGLLPT LGNI
Sbjct: 147 LGETLQPEVRGTLGLLPTALGNI 169

Fails to transport trehalose.

Drosophila melanogaster (taxid: 7227)

>sp|B4J913|TRET1_DROGR Facilitated trehalose transporter Tret1 OS=Drosophila grimshawi GN=Tret1 PE=3 SV=1

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 119/143 (83%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGG 61
           + VLA+L+VSLGS++VGF+SAYTSPA+ SM     +    + E+ASW+G +MPL+ L GG
Sbjct: 467 TQVLAALSVSLGSLVVGFSSAYTSPALVSMTDRNLTSFDVSTEDASWVGGIMPLAGLAGG 526

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           +AGGPLIE LGRR TIL+T +PFI+S+LLIA A  VPM+L+GR +AGFCVGIASL+LPVY
Sbjct: 527 IAGGPLIEYLGRRNTILATAVPFIISWLLIACAVNVPMVLSGRFLAGFCVGIASLSLPVY 586

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 587 LGETVQPEVRGTLGLLPTAFGNI 609

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila grimshawi (taxid: 7222)

>sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1

 Score =  175 bits (444), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 119/143 (83%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGG 61
           + +LA++ VS+GSM+VGFASAYTSPA+ SM N   +    TE+EASW+G +MPL+ L GG
Sbjct: 42  TQILAAIAVSMGSMVVGFASAYTSPALVSMQNTTITSFKVTEQEASWVGGIMPLAGLAGG 101

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           +AGGP IE LGR+ TIL+T +PFIV++LLIA AN + M+LAGR ++GFCVGIASL+LPVY
Sbjct: 102 IAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVY 161

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 162 LGETVQPEVRGTLGLLPTAFGNI 184

High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Polypedilum vanderplanki (taxid: 319348)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  175 bits (443), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 98/143 (68%), Positives = 116/143 (81%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGG 61
           + VLA+L+VSLGS++VGF SAYTSPA+ SM N+  +    T + ASW+G +MPL+ L GG
Sbjct: 406 TQVLAALSVSLGSLVVGFVSAYTSPALVSMTNRNMTSFEVTPQAASWVGGIMPLAGLAGG 465

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           +AGGP IE LGRR TIL+T +PFIVS LLIA A  V M+LAGR +AGFCVGIASL+LPVY
Sbjct: 466 IAGGPFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMVLAGRFLAGFCVGIASLSLPVY 525

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 526 LGETVQPEVRGTLGLLPTAFGNI 548

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score =  175 bits (443), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 98/143 (68%), Positives = 116/143 (81%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGG 61
           + VLA+L+VSLGS++VGF SAYTSPA+ SM N+  +    T + ASW+G +MPL+ L GG
Sbjct: 407 TQVLAALSVSLGSLVVGFVSAYTSPALVSMTNRNMTSFEVTPQAASWVGGIMPLAGLAGG 466

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           +AGGP IE LGRR TIL+T +PFIVS LLIA A  V M+LAGR +AGFCVGIASL+LPVY
Sbjct: 467 IAGGPFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMVLAGRFLAGFCVGIASLSLPVY 526

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 527 LGETVQPEVRGTLGLLPTAFGNI 549

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|A1Z8N1|TRE11_DROME Facilitated trehalose transporter Tret1-1 OS=Drosophila melanogaster GN=Tret1-1 PE=1 SV=1

 Score =  173 bits (438), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 96/143 (67%), Positives = 114/143 (79%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGG 61
           + VLA+L+VSLGS++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+ L GG
Sbjct: 395 TQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGG 454

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           +AGGPLIE LGRR TIL+T +PFIVS LLIA A  V M+L GR +AGFCVGIASL+LPVY
Sbjct: 455 IAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVY 514

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 515 LGETVQPEVRGTLGLLPTAFGNI 537

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
328723539	667	PREDICTED: facilitated trehalose transpo	0.965	0.208	0.776	5e-55
193674084	646	PREDICTED: facilitated trehalose transpo	0.965	0.215	0.776	6e-55
291461575	499	sugar transporter 8 [Nilaparvata lugens]	0.979	0.282	0.758	4e-52
156553585	491	PREDICTED: facilitated trehalose transpo	0.986	0.289	0.673	3e-47
50293089	494	gastric caeca sugar transporter [Locusta	0.986	0.287	0.678	1e-46
195333487	857	GM21298 [Drosophila sechellia] gi|300681	0.986	0.165	0.671	6e-45
383864982	637	PREDICTED: facilitated trehalose transpo	0.979	0.221	0.676	2e-44
242025506	494	sugar transporter, putative [Pediculus h	0.986	0.287	0.664	6e-44
195362922	237	GM23051 [Drosophila sechellia] gi|194130	0.986	0.599	0.678	6e-44
170036862	517	sugar transporter [Culex quinquefasciatu	0.986	0.274	0.643	2e-43

>gi|328723539|ref|XP_003247868.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 127/139 (91%)

Query: 5   VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAG 64
           +LASLTVSL SM+VGFASAYTSPA+PSMN+ GS ++ TEEE SWIGSLMPL+AL GGMAG
Sbjct: 202 ILASLTVSLCSMVVGFASAYTSPALPSMNRPGSPLTVTEEEGSWIGSLMPLAALIGGMAG 261

Query: 65  GPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGE 124
           GPLIES+GR+TTIL+TG+PFI+SF+LIA+A  V M++AGR +AGFCVG+ASL LPVYLGE
Sbjct: 262 GPLIESIGRKTTILATGIPFIISFILIAMAVNVQMVMAGRAIAGFCVGVASLGLPVYLGE 321

Query: 125 TVQPEVRGTLGLLPTFLGN 143
           TVQP+VRGTLGLLPT LGN
Sbjct: 322 TVQPQVRGTLGLLPTTLGN 340

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193674084|ref|XP_001950990.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Acyrthosiphon pisum]

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 127/139 (91%)

Query: 5   VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAG 64
           +LASLTVSL SM+VGFASAYTSPA+PSMN+ GS ++ TEEE SWIGSLMPL+AL GGMAG
Sbjct: 181 ILASLTVSLCSMVVGFASAYTSPALPSMNRPGSPLTVTEEEGSWIGSLMPLAALIGGMAG 240

Query: 65  GPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGE 124
           GPLIES+GR+TTIL+TG+PFI+SF+LIA+A  V M++AGR +AGFCVG+ASL LPVYLGE
Sbjct: 241 GPLIESIGRKTTILATGIPFIISFILIAMAVNVQMVMAGRAIAGFCVGVASLGLPVYLGE 300

Query: 125 TVQPEVRGTLGLLPTFLGN 143
           TVQP+VRGTLGLLPT LGN
Sbjct: 301 TVQPQVRGTLGLLPTTLGN 319

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461575|dbj|BAI83422.1| sugar transporter 8 [Nilaparvata lugens]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 121/141 (85%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGM 62
           S VLA+++VSLGSM+VGF+SAYTSPAI SMN   S +  T +E SWIGSLMPL ALFGG+
Sbjct: 28  SQVLAAVSVSLGSMVVGFSSAYTSPAIASMNSNASSLHVTPQEESWIGSLMPLCALFGGI 87

Query: 63  AGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYL 122
           AGGPLIE++GRRTTILST +PFI+SFLLIA A  V  ILAGR ++GFCVGIASLALPVYL
Sbjct: 88  AGGPLIETIGRRTTILSTAIPFILSFLLIASATNVATILAGRSISGFCVGIASLALPVYL 147

Query: 123 GETVQPEVRGTLGLLPTFLGN 143
           GETVQPEVRGTLGLLPT  GN
Sbjct: 148 GETVQPEVRGTLGLLPTTFGN 168

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553585|ref|XP_001600172.1| PREDICTED: facilitated trehalose transporter Tret1-like [Nasonia vitripennis]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/144 (67%), Positives = 119/144 (82%), Gaps = 2/144 (1%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQ--MGSRVSPTEEEASWIGSLMPLSALFG 60
           S VLA+ +VSLGSM+VGFAS+YTSPAI SM    +      T++ +SW+GS+MPLSALFG
Sbjct: 27  SQVLAAFSVSLGSMVVGFASSYTSPAIVSMTNSTLNPDFEVTKDASSWVGSIMPLSALFG 86

Query: 61  GMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPV 120
           G+AGGPLIE +GRR TIL T  PFI+S+LLI LA+ V MIL+GR ++GFCVG+ASL+LPV
Sbjct: 87  GIAGGPLIEYIGRRNTILFTAFPFIISWLLIGLASNVAMILSGRALSGFCVGVASLSLPV 146

Query: 121 YLGETVQPEVRGTLGLLPTFLGNI 144
           YLGET+QPEVRG+LGLLPT  GNI
Sbjct: 147 YLGETIQPEVRGSLGLLPTAFGNI 170

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|50293089|gb|AAT72921.1| gastric caeca sugar transporter [Locusta migratoria]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 119/143 (83%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMN-QMGSRVSPTEEEASWIGSLMPLSALFGG 61
           + VLAS++VS GS++VGF+SAYTSPA+ SM     S ++  E++ SWIGSLMPL+AL GG
Sbjct: 33  TQVLASVSVSTGSLVVGFSSAYTSPALASMKADTNSTITVDEQQESWIGSLMPLAALLGG 92

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           +AGGPLIE++GR+TTIL+T +PFI+SFLLI LA  VPMILAGR VAGFCVGIASL LPVY
Sbjct: 93  VAGGPLIEAIGRKTTILATAVPFIISFLLIGLAVNVPMILAGRSVAGFCVGIASLCLPVY 152

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           +GETVQ EVRG LGL+ T  GN+
Sbjct: 153 MGETVQAEVRGMLGLISTTFGNL 175

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195333487|ref|XP_002033422.1| GM21298 [Drosophila sechellia] gi|300681179|sp|B4HNS0.1|TRE11_DROSE RecName: Full=Facilitated trehalose transporter Tret1-1 gi|194125392|gb|EDW47435.1| GM21298 [Drosophila sechellia]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 114/143 (79%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGG 61
           + VLA+L+VSLGS++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+AL GG
Sbjct: 395 TQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAALAGG 454

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGPLIE LGRR TIL+T +PFIVS LLIA A  V M+L GR +AGFCVGIASL+LPVY
Sbjct: 455 ITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVY 514

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 515 LGETVQPEVRGTLGLLPTAFGNI 537

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864982|ref|XP_003707956.1| PREDICTED: facilitated trehalose transporter Tret1-like [Megachile rotundata]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 113/142 (79%), Gaps = 1/142 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGG 61
           S VLA+L+VSLGSM+VG++S+YTSP + SM N   +    T+E   WIGS+MPLSALFGG
Sbjct: 185 SQVLAALSVSLGSMVVGYSSSYTSPGLVSMQNNATTSFEVTKEIGMWIGSIMPLSALFGG 244

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGP IE LGRR TIL T LPFI ++LLIALA+ V MIL GR + GFCVGIASL+LPVY
Sbjct: 245 IFGGPCIEYLGRRNTILGTALPFITAWLLIALASNVAMILVGRALCGFCVGIASLSLPVY 304

Query: 122 LGETVQPEVRGTLGLLPTFLGN 143
           LGET+Q EVRGTLGLLPT  GN
Sbjct: 305 LGETIQAEVRGTLGLLPTAFGN 326

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025506|ref|XP_002433165.1| sugar transporter, putative [Pediculus humanus corporis] gi|212518706|gb|EEB20427.1| sugar transporter, putative [Pediculus humanus corporis]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 95/143 (66%), Positives = 111/143 (77%), Gaps = 1/143 (0%)

Query: 2   KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEA-SWIGSLMPLSALFG 60
           K  V+A+++VSLGSMIVGF S YTSPA  SM  + S   P  E+A SWIG +MPL+AL G
Sbjct: 27  KEQVMAAVSVSLGSMIVGFVSGYTSPASVSMKTLESEYFPVSEQAVSWIGGIMPLAALLG 86

Query: 61  GMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPV 120
           G+ GGPLI+ LGR+TTIL T +PFI+S LLIA A  V  +L GR +AG CVGI SL+LPV
Sbjct: 87  GIVGGPLIDFLGRKTTILHTAIPFIISSLLIACATNVAYVLVGRAIAGICVGILSLSLPV 146

Query: 121 YLGETVQPEVRGTLGLLPTFLGN 143
           YLGETVQPEVRGTLGLLPT LGN
Sbjct: 147 YLGETVQPEVRGTLGLLPTALGN 169

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195362922|ref|XP_002045564.1| GM23051 [Drosophila sechellia] gi|194130668|gb|EDW52711.1| GM23051 [Drosophila sechellia]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 114/143 (79%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGG 61
           S VLA+L+VSLGS++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+AL GG
Sbjct: 27  SQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAALAGG 86

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGPLIE LGRR TIL+T +PFIVS LLIA A  V M+L GR +AGFCVGIASL+LPVY
Sbjct: 87  ITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVY 146

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 147 LGETVQPEVRGTLGLLPTAFGNI 169

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036862|ref|XP_001846280.1| sugar transporter [Culex quinquefasciatus] gi|300681185|sp|B0WC46.1|TRET1_CULQU RecName: Full=Facilitated trehalose transporter Tret1 gi|167879815|gb|EDS43198.1| sugar transporter [Culex quinquefasciatus]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 113/143 (79%), Gaps = 1/143 (0%)

Query: 3   SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGG 61
           S VLA+L+VSLGSM+VGF+SAYTSPA+ SM     +    T++  SW+G +MPL+ L GG
Sbjct: 55  SQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVGG 114

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
           + GGPLIE LGR+ TIL+T  PFI+S+LLIA A  V M+L GR ++GF VG+ASL+LPVY
Sbjct: 115 ILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVY 174

Query: 122 LGETVQPEVRGTLGLLPTFLGNI 144
           LGETVQPEVRGTLGLLPT  GNI
Sbjct: 175 LGETVQPEVRGTLGLLPTAFGNI 197

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
UNIPROTKB|A5LGM7	504	Tret1 "Facilitated trehalose t	0.972	0.277	0.680	5.4e-47
UNIPROTKB|B4J913	929	Tret1 "Facilitated trehalose t	0.972	0.150	0.687	7e-46
UNIPROTKB|Q291H8	868	Tret1 "Facilitated trehalose t	0.972	0.161	0.695	6.6e-45
UNIPROTKB|B4GAP7	869	Tret1 "Facilitated trehalose t	0.972	0.161	0.695	6.6e-45
UNIPROTKB|B3NSE1	856	Tret1 "Facilitated trehalose t	0.972	0.163	0.680	2.2e-44
FB|FBgn0050035	857	Tret1-1 "Trehalose transporter	0.972	0.163	0.680	2.2e-44
UNIPROTKB|B4HNS0	857	Tret1-1 "Facilitated trehalose	0.972	0.163	0.680	2.2e-44
UNIPROTKB|B4QBN2	857	Tret1-1 "Facilitated trehalose	0.972	0.163	0.680	2.2e-44
UNIPROTKB|B4KR05	863	Tret1 "Facilitated trehalose t	0.972	0.162	0.680	2.2e-44
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.986	0.290	0.678	2.4e-44

UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 96/141 (68%), Positives = 118/141 (83%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGGMA 63
             +LA++ VS+GSM+VGFASAYTSPA+ SM N   +    TE+EASW+G +MPL+ L GG+A
Sbjct:    44 ILAAIAVSMGSMVVGFASAYTSPALVSMQNTTITSFKVTEQEASWVGGIMPLAGLAGGIA 103

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGP IE LGR+ TIL+T +PFIV++LLIA AN + M+LAGR ++GFCVGIASL+LPVYLG
Sbjct:   104 GGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLG 163

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   164 ETVQPEVRGTLGLLPTAFGNI 184

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|B4J913 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila grimshawi (taxid:7222)]

 Score = 490 (177.5 bits), Expect = 7.0e-46, P = 7.0e-46
 Identities = 97/141 (68%), Positives = 118/141 (83%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGGMA 63
             VLA+L+VSLGS++VGF+SAYTSPA+ SM     +    + E+ASW+G +MPL+ L GG+A
Sbjct:   469 VLAALSVSLGSLVVGFSSAYTSPALVSMTDRNLTSFDVSTEDASWVGGIMPLAGLAGGIA 528

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGPLIE LGRR TIL+T +PFI+S+LLIA A  VPM+L+GR +AGFCVGIASL+LPVYLG
Sbjct:   529 GGPLIEYLGRRNTILATAVPFIISWLLIACAVNVPMVLSGRFLAGFCVGIASLSLPVYLG 588

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   589 ETVQPEVRGTLGLLPTAFGNI 609

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 480 (174.0 bits), Expect = 6.6e-45, P = 6.6e-45
 Identities = 98/141 (69%), Positives = 115/141 (81%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGGMA 63
             VLA+L+VSLGS++VGF SAYTSPA+ SM N+  +    T + ASW+G +MPL+ L GG+A
Sbjct:   408 VLAALSVSLGSLVVGFVSAYTSPALVSMTNRNMTSFEVTPQAASWVGGIMPLAGLAGGIA 467

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGP IE LGRR TIL+T +PFIVS LLIA A  V M+LAGR +AGFCVGIASL+LPVYLG
Sbjct:   468 GGPFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMVLAGRFLAGFCVGIASLSLPVYLG 527

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   528 ETVQPEVRGTLGLLPTAFGNI 548

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4GAP7 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila persimilis (taxid:7234)]

 Score = 480 (174.0 bits), Expect = 6.6e-45, P = 6.6e-45
 Identities = 98/141 (69%), Positives = 115/141 (81%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGGMA 63
             VLA+L+VSLGS++VGF SAYTSPA+ SM N+  +    T + ASW+G +MPL+ L GG+A
Sbjct:   409 VLAALSVSLGSLVVGFVSAYTSPALVSMTNRNMTSFEVTPQAASWVGGIMPLAGLAGGIA 468

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGP IE LGRR TIL+T +PFIVS LLIA A  V M+LAGR +AGFCVGIASL+LPVYLG
Sbjct:   469 GGPFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMVLAGRFLAGFCVGIASLSLPVYLG 528

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   529 ETVQPEVRGTLGLLPTAFGNI 549

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B3NSE1 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila erecta (taxid:7220)]

 Score = 475 (172.3 bits), Expect = 2.2e-44, P = 2.2e-44
 Identities = 96/141 (68%), Positives = 113/141 (80%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGGMA 63
             VLA+L+VSLGS++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+ L GG+A
Sbjct:   396 VLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGGIA 455

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGPLIE LGRR TIL+T +PFIVS LLIA A  V M+L GR +AGFCVGIASL+LPVYLG
Sbjct:   456 GGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLG 515

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   516 ETVQPEVRGTLGLLPTAFGNI 536

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)]

 Score = 475 (172.3 bits), Expect = 2.2e-44, P = 2.2e-44
 Identities = 96/141 (68%), Positives = 113/141 (80%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGGMA 63
             VLA+L+VSLGS++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+ L GG+A
Sbjct:   397 VLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGGIA 456

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGPLIE LGRR TIL+T +PFIVS LLIA A  V M+L GR +AGFCVGIASL+LPVYLG
Sbjct:   457 GGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLG 516

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   517 ETVQPEVRGTLGLLPTAFGNI 537

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015771 "trehalose transport" evidence=IDA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)]

 Score = 475 (172.3 bits), Expect = 2.2e-44, P = 2.2e-44
 Identities = 96/141 (68%), Positives = 113/141 (80%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGGMA 63
             VLA+L+VSLGS++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+AL GG+ 
Sbjct:   397 VLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAALAGGIT 456

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGPLIE LGRR TIL+T +PFIVS LLIA A  V M+L GR +AGFCVGIASL+LPVYLG
Sbjct:   457 GGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLG 516

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   517 ETVQPEVRGTLGLLPTAFGNI 537

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN2 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila simulans (taxid:7240)]

 Score = 475 (172.3 bits), Expect = 2.2e-44, P = 2.2e-44
 Identities = 96/141 (68%), Positives = 113/141 (80%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGGMA 63
             VLA+L+VSLGS++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+ L GG+A
Sbjct:   397 VLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGGIA 456

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGPLIE LGRR TIL+T +PFIVS LLIA A  V M+L GR +AGFCVGIASL+LPVYLG
Sbjct:   457 GGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLG 516

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   517 ETVQPEVRGTLGLLPTAFGNI 537

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4KR05 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila mojavensis (taxid:7230)]

 Score = 475 (172.3 bits), Expect = 2.2e-44, P = 2.2e-44
 Identities = 96/141 (68%), Positives = 114/141 (80%)

Query:     5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGGMA 63
             VLA+L+VSLGS++VGFASAYTSPA+ SM     +    T + ASW+G +MPL+ L GG+A
Sbjct:   403 VLAALSVSLGSLVVGFASAYTSPALVSMTNTNLTSFVVTPQAASWVGGIMPLAGLAGGIA 462

Query:    64 GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123
             GGP IE LGRR TIL+T +PFI+S+LLIA A  V M+L GR +AGFCVGIASL+LPVYLG
Sbjct:   463 GGPFIEYLGRRNTILATAVPFIISWLLIACAVNVVMVLCGRFLAGFCVGIASLSLPVYLG 522

Query:   124 ETVQPEVRGTLGLLPTFLGNI 144
             ETVQPEVRGTLGLLPT  GNI
Sbjct:   523 ETVQPEVRGTLGLLPTAFGNI 543

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 97/143 (67%), Positives = 114/143 (79%)

Query:     3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG-SRVSPTEEEASWIGSLMPLSALFGG 61
             S VLA+L+VSL S++VGF SAYTSPA+ SM     +    T++  SW+G +MPL+AL GG
Sbjct:    27 SQVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGG 86

Query:    62 MAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVY 121
             + GGPLIE LGRRTTIL+T +PFIVS LLIA A  V MIL GR + GFCVGIASL+LPVY
Sbjct:    87 ITGGPLIEYLGRRTTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVY 146

Query:   122 LGETVQPEVRGTLGLLPTFLGNI 144
             LGET+QPEVRGTLGLLPT LGNI
Sbjct:   147 LGETLQPEVRGTLGLLPTALGNI 169

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8MKK4	TRE12_DROME	No assigned EC number	0.6713	0.9861	0.2909	yes	N/A
Q291H8	TRET1_DROPS	No assigned EC number	0.6853	0.9861	0.1635	yes	N/A
Q7PIR5	TRET1_ANOGA	No assigned EC number	0.6293	0.9861	0.1790	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-12
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	9e-06
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	9e-05
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	0.004

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 10/137 (7%)

Query: 9   LTVSLGSMIVGFASAYTSPAIPSMNQ-----MGSRVSPTEEEASWIG---SLMPLSALFG 60
           L  +LG  + G+ +      +  +         + +          G   S+  +  L G
Sbjct: 3   LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62

Query: 61  GMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG--VPMILAGRCVAGFCVGIASLAL 118
            +  G L +  GR+ ++L   + F++  LL   A G    M++ GR + G  VG  S+ +
Sbjct: 63  SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122

Query: 119 PVYLGETVQPEVRGTLG 135
           P+Y+ E    ++RG LG
Sbjct: 123 PMYISEIAPKKLRGALG 139

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 4   AVLASLTVSLGSMIVGFASAYTSPAIPSMN---QMGSRVSPTEEEASW--IGSLMPLSAL 58
             L SL  ++G ++ G+ +     A+       +  S  S +   + W  + S+  +   
Sbjct: 26  VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGF 85

Query: 59  FGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN---GVPMILAGRCVAGFCVGIAS 115
            G +  G L +  GR+ ++L   L F++  +L+ LA     V M++ GR + G  VGIAS
Sbjct: 86  IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS 145

Query: 116 LALPVYLGETVQPEVRGTLG 135
             +P+YL E     +RG L 
Sbjct: 146 ALVPMYLSEIAPKALRGALT 165

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 9   LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLI 68
           L + LG  + G      SPA+P + +    +  +  +A  I S   L    G +  G L 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAED---LGLSASQAGLIVSAFSLGYALGSLLAGYLS 58

Query: 69  ESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQP 128
           +  GRR  +L   L F +  LL+A A+ + ++L GR + G   G    A    + E   P
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 129 EVRGTLGLLPTFLGNI 144
           + RG    L +    +
Sbjct: 119 KERGRALGLFSAGFGL 134

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 11  VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES 70
           + L + + G   +   PA+P    +   +  +  E   + +   L         G L + 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR 58

Query: 71  LGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV 130
            GRR  +L   L F +  LL+  A+ + ++L  R + G   G    A    + +   PE 
Sbjct: 59  FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 131 RG 132
           RG
Sbjct: 119 RG 120

Length = 346

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 19/145 (13%)

Query: 8   SLTVSLGSMIVGFASAYTSPAIPSMNQ--MGSRVSPTEEEASWIGSLMPLSAL----FGG 61
           +L  +LG ++ G+ +A  S  + S+N   +  +        S +G     SAL     GG
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLG-FCVASALIGCIIGG 72

Query: 62  MAGGPLIESLGRRTTILSTGLPFIVS--------FLLIAL----ANGVPMILAGRCVAGF 109
             GG      GRR ++    + F +S        F   ++       VP  +  R + G 
Sbjct: 73  ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI 132

Query: 110 CVGIASLALPVYLGETVQPEVRGTL 134
            VG+AS+  P+Y+ E     +RG L
Sbjct: 133 GVGLASMLSPMYIAEIAPAHIRGKL 157

Length = 479

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 29/90 (32%), Positives = 42/90 (46%)

Query: 45  EASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 104
           +  ++ S   +   FG +  GPL + +GRR  +L + L F V  LL ALA  V  +L  R
Sbjct: 53  QLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILR 112

Query: 105 CVAGFCVGIASLALPVYLGETVQPEVRGTL 134
            +AG  +G     L   + E      RGT 
Sbjct: 113 FLAGLGLGGLMPNLNALVSEYAPKRFRGTA 142

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.85
PRK03545	390	putative arabinose transporter; Provisional	99.83
TIGR00891	405	2A0112 putative sialic acid transporter.	99.82
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.81
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.81
PRK12307	426	putative sialic acid transporter; Provisional	99.81
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.8
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.8
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.8
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.79
PRK03633	381	putative MFS family transporter protein; Provision	99.79
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.79
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.78
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.78
PRK03699	394	putative transporter; Provisional	99.77
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.77
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.77
PRK11663	434	regulatory protein UhpC; Provisional	99.76
PRK10642	490	proline/glycine betaine transporter; Provisional	99.76
KOG1330|consensus	493		99.76
PRK10091	382	MFS transport protein AraJ; Provisional	99.76
PRK10504	471	putative transporter; Provisional	99.75
PRK03893	496	putative sialic acid transporter; Provisional	99.75
TIGR00895	398	2A0115 benzoate transport.	99.75
PRK09705	393	cynX putative cyanate transporter; Provisional	99.75
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.75
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.75
PRK15075	434	citrate-proton symporter; Provisional	99.75
PRK12382	392	putative transporter; Provisional	99.75
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.74
PRK05122	399	major facilitator superfamily transporter; Provisi	99.74
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.74
TIGR00893	399	2A0114 d-galactonate transporter.	99.73
PRK10133	438	L-fucose transporter; Provisional	99.73
PLN00028	476	nitrate transmembrane transporter; Provisional	99.73
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.73
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.73
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.72
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.72
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.72
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.72
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.72
TIGR00900	365	2A0121 H+ Antiporter protein.	99.71
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.71
PRK09952	438	shikimate transporter; Provisional	99.71
PRK10054	395	putative transporter; Provisional	99.7
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.7
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.69
KOG0254|consensus	513		99.69
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.69
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.69
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.68
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.68
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.68
PRK11043	401	putative transporter; Provisional	99.68
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.67
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.67
TIGR00898	505	2A0119 cation transport protein.	99.66
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.64
PRK09874	408	drug efflux system protein MdtG; Provisional	99.64
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.63
KOG0252|consensus	538		99.63
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.62
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.61
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.6
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.6
TIGR00805	633	oat sodium-independent organic anion transporter.	99.6
PTZ00207	591	hypothetical protein; Provisional	99.57
KOG0569|consensus	485		99.57
KOG0255|consensus	521		99.56
PRK10489	417	enterobactin exporter EntS; Provisional	99.56
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.55
KOG3764|consensus	464		99.54
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.54
TIGR00901	356	2A0125 AmpG-related permease.	99.53
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.53
KOG2615|consensus	451		99.51
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.49
PRK10642	490	proline/glycine betaine transporter; Provisional	99.48
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.47
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.47
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.46
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.46
TIGR00891	405	2A0112 putative sialic acid transporter.	99.46
KOG2532|consensus	466		99.45
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.45
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.44
TIGR00895	398	2A0115 benzoate transport.	99.44
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.42
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.42
TIGR00900	365	2A0121 H+ Antiporter protein.	99.41
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
PRK11902	402	ampG muropeptide transporter; Reviewed	99.41
PRK11010	491	ampG muropeptide transporter; Validated	99.4
PRK15011	393	sugar efflux transporter B; Provisional	99.39
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.38
PRK15075	434	citrate-proton symporter; Provisional	99.37
TIGR00901	356	2A0125 AmpG-related permease.	99.36
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.36
PRK09952	438	shikimate transporter; Provisional	99.34
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.32
PRK05122	399	major facilitator superfamily transporter; Provisi	99.31
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.3
PRK10489	417	enterobactin exporter EntS; Provisional	99.3
PRK12382	392	putative transporter; Provisional	99.3
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.29
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.29
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.29
PRK03893	496	putative sialic acid transporter; Provisional	99.29
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.29
PRK12307	426	putative sialic acid transporter; Provisional	99.28
KOG2533|consensus	495		99.27
KOG2504|consensus	509		99.26
PRK09528	420	lacY galactoside permease; Reviewed	99.26
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.26
PRK15011	393	sugar efflux transporter B; Provisional	99.25
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.24
PRK03699	394	putative transporter; Provisional	99.24
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.24
TIGR00893	399	2A0114 d-galactonate transporter.	99.24
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.21
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.2
PRK09528	420	lacY galactoside permease; Reviewed	99.2
PRK09874	408	drug efflux system protein MdtG; Provisional	99.2
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.2
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.19
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.19
PRK10504	471	putative transporter; Provisional	99.18
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.18
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.18
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.17
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.17
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.16
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.16
PRK09705	393	cynX putative cyanate transporter; Provisional	99.14
PRK03545	390	putative arabinose transporter; Provisional	99.14
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.14
PRK03633	381	putative MFS family transporter protein; Provision	99.13
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.13
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.11
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.11
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.1
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.1
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.08
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.07
TIGR00898	505	2A0119 cation transport protein.	99.07
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.06
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.03
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.03
KOG2325|consensus	488		99.02
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.02
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.02
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.01
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.01
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.0
KOG0253|consensus	528		99.0
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.99
PRK11663	434	regulatory protein UhpC; Provisional	98.98
PRK09848	448	glucuronide transporter; Provisional	98.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.97
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.96
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.96
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.95
PLN00028	476	nitrate transmembrane transporter; Provisional	98.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.93
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.92
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.9
PRK10429	473	melibiose:sodium symporter; Provisional	98.9
PF13347	428	MFS_2: MFS/sugar transport protein	98.89
PF12832	77	MFS_1_like: MFS_1 like family	98.89
PRK09669	444	putative symporter YagG; Provisional	98.88
PRK10054	395	putative transporter; Provisional	98.88
KOG0569|consensus	485		98.88
PRK11010	491	ampG muropeptide transporter; Validated	98.87
PRK10133	438	L-fucose transporter; Provisional	98.87
PRK11043	401	putative transporter; Provisional	98.84
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.83
PRK10429	473	melibiose:sodium symporter; Provisional	98.83
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.79
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.76
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.76
COG0477	338	ProP Permeases of the major facilitator superfamil	98.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.72
PRK10091	382	MFS transport protein AraJ; Provisional	98.71
PRK11902	402	ampG muropeptide transporter; Reviewed	98.7
KOG0253|consensus	528		98.69
KOG2563|consensus	480		98.66
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.65
PRK09848	448	glucuronide transporter; Provisional	98.65
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.65
PRK09669	444	putative symporter YagG; Provisional	98.64
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.64
COG2211	467	MelB Na+/melibiose symporter and related transport	98.64
KOG2504|consensus	509		98.62
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.61
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.6
PRK11462	460	putative transporter; Provisional	98.59
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.57
KOG4686|consensus	459		98.57
KOG4686|consensus	459		98.57
KOG0254|consensus	513		98.57
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.54
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.52
PF13347	428	MFS_2: MFS/sugar transport protein	98.51
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.49
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.46
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.45
PRK11462	460	putative transporter; Provisional	98.35
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.3
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.23
COG2211	467	MelB Na+/melibiose symporter and related transport	98.16
KOG3762|consensus	618		98.14
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.1
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.1
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.97
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.95
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.91
KOG2533|consensus	495		97.86
KOG0637|consensus	498		97.81
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.8
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.79
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.75
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.74
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.73
KOG2532|consensus	466		97.69
KOG3762|consensus	618		97.69
KOG0252|consensus	538		97.66
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.6
KOG2816|consensus	463		97.55
KOG2816|consensus	463		97.54
KOG3764|consensus	464		97.44
KOG0255|consensus	521		97.28
KOG4332|consensus	454		97.19
PTZ00207	591	hypothetical protein; Provisional	97.18
KOG3098|consensus	461		97.08
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.02
KOG2615|consensus	451		96.92
TIGR00805	633	oat sodium-independent organic anion transporter.	96.83
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.61
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.55
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.53
KOG3098|consensus	461		96.15
KOG1330|consensus	493		95.97
KOG3626|consensus	735		95.9
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.81
KOG3574|consensus	510		95.79
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.18
KOG2563|consensus	480		95.0
KOG1237|consensus	571		93.98
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.77
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.19
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.08
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	90.68
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	90.31
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	89.74
KOG3626|consensus	735		89.72
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.45
KOG4332|consensus	454		89.12
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	89.02
KOG0637|consensus	498		87.44
KOG3810|consensus	433		84.64
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	84.61
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	83.87
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	82.07

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.85  E-value=8.4e-21  Score=135.60  Aligned_cols=137  Identities=12%  Similarity=0.027  Sum_probs=126.4

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG   81 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~   81 (144)
                      |++|+....+.+..+.+.++........|.+.+   +++.++++.+++.+.+.++..+++++.|++.||+|||+.+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~   80 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM   80 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH
Confidence            446778888888888889999999988998777   99999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ++..++.....+++|++.+++.|++.|++.+...+....+++|++|+++|+++.++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  140 (412)
T TIGR02332        81 VLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA  140 (412)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888888999999999999999888754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.83  E-value=6.7e-20  Score=129.93  Aligned_cols=137  Identities=16%  Similarity=0.100  Sum_probs=119.9

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG   81 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~   81 (144)
                      ++++...+.+.+..+..........+..|.+.+   ++|.++++.++..+.+.++..+++++.|++.||+||||.+..+.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            456666666677666655555555567888887   89999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +...++...+.+++|++.+++.|+++|++.+...+....++.|++|+|+|+++.++.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~  141 (390)
T PRK03545         82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATG  141 (390)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Confidence            999999999999999999999999999999888888899999999999999999887654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.82  E-value=1.4e-19  Score=128.13  Aligned_cols=138  Identities=19%  Similarity=0.152  Sum_probs=127.1

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG   81 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~   81 (144)
                      +++++......++.+.+.++.....+..|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   84 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI   84 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            456777788888899999999999999999888   89999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +...++.....+.++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  145 (405)
T TIGR00891        85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY  145 (405)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence            9999999888899999999999999999999999999999999999999999998876543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.81  E-value=1.8e-19  Score=135.81  Aligned_cols=136  Identities=19%  Similarity=0.216  Sum_probs=123.0

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      ++|.....++++.+..+++...+...+|.+.+   +++.+..+.+++.+...++.+++.+++|+++||+|||+.++++.+
T Consensus       164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            45666677777778888888888888998887   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +..++.++..++++++.+++.|++.|++.|+..+....+++|++|+++|++..++.+.+
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~  299 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF  299 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            99999988899999999999999999999999999999999999999999988776544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.81  E-value=2.5e-19  Score=130.72  Aligned_cols=139  Identities=17%  Similarity=0.162  Sum_probs=126.6

Q ss_pred             CcchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhh
Q psy6141           1 MKSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILST   80 (144)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~   80 (144)
                      +.|++.....+++..+....+.......+|.+.+   ++|.+.++.+|+.+.+.++...+.++.|+++||+|||+.++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~   77 (495)
T PRK14995          1 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG   77 (495)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3567888899999999999999999999999988   8999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhcc-Ccchhhhhchhhhhhc
Q psy6141          81 GLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETV-QPEVRGTLGLLPTFLG  142 (144)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~  142 (144)
                      .+...++.+.+..++|++.++++|.++|++.+...+.....+.+.+ |+++|+++.++.....
T Consensus        78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~  140 (495)
T PRK14995         78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVG  140 (495)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988887777776765 6789999988876543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.81  E-value=3.4e-19  Score=127.48  Aligned_cols=137  Identities=18%  Similarity=0.206  Sum_probs=124.0

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      .++.......+..+..+++.....+..|.+.+   +++.++.+.++..+...++..+++++.|+++||+|||+.+..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~   91 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            34555667777778888888888888898887   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ...++.....++++++.+++.|++.|++.+...+....++.|.+|+|+|+++.++.+...
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  151 (426)
T PRK12307         92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGF  151 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988876543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.80  E-value=5.7e-19  Score=123.72  Aligned_cols=137  Identities=26%  Similarity=0.262  Sum_probs=130.0

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG   81 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~   81 (144)
                      ++.+...+.+.++.|..+.........+|.+.+   |++.|..+.|+..+.+..+..++.++...++||+.||+.++...
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l   85 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL   85 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence            345778888899999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .+++++.+.+++++|++.+.++|++.|+..|...+.......|+.|+++|+++.++....
T Consensus        86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G  145 (394)
T COG2814          86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG  145 (394)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.80  E-value=4.5e-19  Score=128.50  Aligned_cols=138  Identities=25%  Similarity=0.419  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccC-----CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQM-----GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL   78 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~   78 (144)
                      +.+..+...++.+.++++.....+..|.+.++     .++.+.++++.+++.+...++..++++++|+++||+|||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            35566777788899999999998888877662     1233788889999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHh------------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          79 STGLPFIVSFLLIALA------------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        79 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .+.++..++.....++            +.++.+++.|+++|++.|...+...++++|++|+++|++++++.+..
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~  164 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA  164 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence            9999988887766652            22566789999999999999999999999999999999999887654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.80  E-value=6.5e-19  Score=125.26  Aligned_cols=136  Identities=17%  Similarity=0.152  Sum_probs=118.2

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      +.|+....+..+.+..........+.+|.+.+   ++|.++++.++..+...++..+++++.|++.||+|||+.+..+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~   93 (394)
T PRK10213         17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAV   93 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence            45555566666655555555455567788877   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +..++.+....+++++.+++.|+++|++.+...+....++.|++|+|+|+++.++....
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~  152 (394)
T PRK10213         94 LLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGA  152 (394)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHH
Confidence            99999988888999999999999999999999999999999999999999998887654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.79  E-value=6.8e-19  Score=125.23  Aligned_cols=137  Identities=26%  Similarity=0.259  Sum_probs=124.3

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      ++|..........+.++++........|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            45667777778888889999888888999988   899999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +..++.+...+.++++.+.+.|++.|++.+...+....++.|++|+|+|+++.++.+...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  148 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGV  148 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            888888888888999999999999999999999999999999999999999998876543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.79  E-value=1.3e-18  Score=123.09  Aligned_cols=137  Identities=18%  Similarity=0.141  Sum_probs=122.1

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG   81 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~   81 (144)
                      ++..+..+.+..+.+..........+.+|.+.+   ++|.|+++.+++.+...++..+++++.|+++||+|||+.+..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~   78 (381)
T PRK03633          2 STYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS   78 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            344445666777788888888999999999998   88999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ++..++.....++++++.+++.|+++|++.+...+.....+.|..|+++|+++.+..+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMV  138 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999999988889999999999999999999988888878888999999999998886654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.79  E-value=7.9e-19  Score=127.21  Aligned_cols=132  Identities=12%  Similarity=0.044  Sum_probs=112.7

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS   87 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~   87 (144)
                      .....+.......+........|.+.+   +++.++++.+++.+.+.+++.+++++.|+++||+|||+.+..+.+...+.
T Consensus        31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~  107 (467)
T PRK09556         31 YLVVFIGYLTMYLIRKNFKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC  107 (467)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH
Confidence            344445555556677888888999888   89999999999999999999999999999999999999998877777666


Q ss_pred             HHHHHH-----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          88 FLLIAL-----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        88 ~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ......     +++++.+++.|++.|++.+...+....+++|++|+++|++++++.+...
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~  167 (467)
T PRK09556        108 MLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISH  167 (467)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeeccc
Confidence            655443     5789999999999999999988999999999999999999999877654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.78  E-value=1e-18  Score=125.47  Aligned_cols=135  Identities=19%  Similarity=0.162  Sum_probs=109.6

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCC---CCcchh---HHHHHHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVS---PTEEEA---SWIGSLMPLSALFGGMAGGPLIESLGRRTT   76 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~   76 (144)
                      ++++......++.+.+.++...+....|.+.+   +++   .+..+.   +.+.+...++..++++++|+++||+||||.
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAH---IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            45555666677888899999998888888777   653   344433   334455556666999999999999999999


Q ss_pred             HhhhchHHHHHHHHHHHhchHH--------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          77 ILSTGLPFIVSFLLIALANGVP--------MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      +..+.+...++.+.+++++++.        .+++.|+++|++.|...+...++++|++|+++|++..++.+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~  167 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYV  167 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHH
Confidence            9999999999999988877653        588899999999999999999999999999999998776543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.78  E-value=2.4e-18  Score=121.22  Aligned_cols=133  Identities=21%  Similarity=0.213  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHH
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFI   85 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~   85 (144)
                      .....................+..|.+.+   +++.++++.+++.+...++..++.++.|++.||+|||+.+..+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~   81 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA   81 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence            33344444455566777888888999888   899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          86 VSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ++.......++++.+.+.|++.|++.+...+....++.|.+|+++|++..++.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (385)
T TIGR00710        82 LSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPV  137 (385)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            99998888999999999999999999999999999999999999999998887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03699 putative transporter; Provisional

Probab=99.77  E-value=2.8e-18  Score=121.91  Aligned_cols=136  Identities=11%  Similarity=0.077  Sum_probs=121.5

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG   81 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~   81 (144)
                      .+|++..+...+..+..+.......+..|.+.+   +++.|+++.+++.+...++..++.++.|++.||+|||+.+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            356666777778888888888888889999988   89999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      +...++.....++++++.+.+.|++.|++.+...+....++.|.+|+++|++..+..+.
T Consensus        80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~  138 (394)
T PRK03699         80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDS  138 (394)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHH
Confidence            99999988888899999999999999999998888888999999999999988776543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.77  E-value=2.5e-18  Score=124.64  Aligned_cols=132  Identities=20%  Similarity=0.263  Sum_probs=120.8

Q ss_pred             HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141           7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV   86 (144)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~   86 (144)
                      ....++.+.+...++.....+..|.+.+   ++|.++++.+++.+.+.++..++.++.|+++||+|||+.+..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   79 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL   79 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3455667777888888888889999988   8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          87 SFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +...+..+++++.+++.|+++|++.+...+....++.|.+|+++|+++.++.+..
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  134 (485)
T TIGR00711        80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLT  134 (485)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.77  E-value=3e-18  Score=125.24  Aligned_cols=141  Identities=13%  Similarity=0.092  Sum_probs=119.4

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccC--CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQM--GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS   79 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~   79 (144)
                      +++++....+.++.+.++++........|.+.+.  .++.+.++.+.+++.+...++..++.++.|+++||+|||+.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~   91 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            3466777788888899999999888888876541  01234456677899999999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          80 TGLPFIVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +.++..++.+....+++      ++.+++.|++.|++.|...+..+.+++|++|+++|+++.++.+...
T Consensus        92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~  160 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQ  160 (502)
T ss_pred             HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence            99999998888777654      6789999999999999999999999999999999999998876653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.76  E-value=4.3e-18  Score=122.42  Aligned_cols=134  Identities=12%  Similarity=0.061  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHH
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFI   85 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~   85 (144)
                      .......+..+...++........|.+.+   ++|.++++.+++.+...++..+++++.|++.||+|||+.+..+.++..
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            44445556666666666777788899988   899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          86 VSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ++.+....+++++.+.+.|++.|++.|...+....++.|++|+++|++++++.+...
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~  156 (434)
T PRK11663        100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAH  156 (434)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            999988899999999999999999999888888999999999999999998876543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.76  E-value=4.4e-18  Score=124.06  Aligned_cols=133  Identities=21%  Similarity=0.217  Sum_probs=111.3

Q ss_pred             hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcch-hHH-----HHHHHHHHHHHHHHhhHHHHhhhcchhhHh
Q psy6141           5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEE-ASW-----IGSLMPLSALFGGMAGGPLIESLGRRTTIL   78 (144)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~   78 (144)
                      +.......++.+.++++...+....|.+.+   +++.+.++ ..+     ..+...++..+++++.|+++||+|||+++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   91 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            345566678889999999998888888776   56433322 122     246777899999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHhchHHH--------HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          79 STGLPFIVSFLLIALANGVPM--------ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      .+.++..++.+.+++++++..        +.+.|+++|++.|...+....+++|++|+++|++..++.+.
T Consensus        92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~  161 (490)
T PRK10642         92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDF  161 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence            999999999999999998764        78899999999999999999999999999999998877653

>KOG1330|consensus

Probab=99.76  E-value=4.1e-18  Score=120.21  Aligned_cols=138  Identities=12%  Similarity=0.097  Sum_probs=127.8

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      +.++....+++...+...+........+...+   .+|+++++.|++++.+.+...++.|+.|+++||++||+++.++..
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~  106 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF  106 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence            45666778888888888888888887777777   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      +..++.+...++.++|.+.++|.+.|+|.+...++.+..++|.+|..+|+++.++.+....
T Consensus       107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip  167 (493)
T KOG1330|consen  107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP  167 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999887653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.76  E-value=8.4e-18  Score=119.03  Aligned_cols=130  Identities=16%  Similarity=0.143  Sum_probs=116.0

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS   87 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~   87 (144)
                      ........+..+.......+.+|.+.+   ++|.++++.++..+...++..+++++.|++.||+|||+.+..+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG   81 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            345556666777777777788899888   89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          88 FLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      .+.+.++++++.+++.|++.|++.+...+.......|++|+++|+++.++...
T Consensus        82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (382)
T PRK10091         82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVS  134 (382)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHH
Confidence            99999999999999999999999998888888899999999999988876554

>PRK10504 putative transporter; Provisional

Probab=99.75  E-value=8.5e-18  Score=121.78  Aligned_cols=134  Identities=17%  Similarity=0.148  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHH
Q psy6141           5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPF   84 (144)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~   84 (144)
                      .+..+.+..+.+...++.....+..|.+.+   ++|.++++.+++.+.+.++..++.++.|+++||+|||+.++.+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~   85 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF   85 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            445667777888888888888889999998   89999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          85 IVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .++.+.+.++++.+.+++.|+++|++.+...+.....+.|.+|+++|+++.++....
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (471)
T PRK10504         86 TLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLP  142 (471)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            888888888899999999999999999999999999999999999999988876643

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.75  E-value=8.5e-18  Score=122.40  Aligned_cols=136  Identities=20%  Similarity=0.187  Sum_probs=122.9

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      ++++....+.+..+...++.....+..|.+.+   +++.++++.++..+...++..++.++.|+++||+|||+.+..+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   93 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            34566677778888888888888888898887   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ...++.+...+.++++.+.+.|++.|++.+...+....++.|.+|+|+|+++.++....
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  152 (496)
T PRK03893         94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG  152 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            99999998899999999999999999999999999999999999999999988877654

>TIGR00895 2A0115 benzoate transport

Probab=99.75  E-value=1.1e-17  Score=117.99  Aligned_cols=136  Identities=26%  Similarity=0.229  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      +++.........+..++.........|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            3444555555666777777777778888887   8999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          84 FIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..++.......++++.+.+.+++.|++.+...+....++.|.+|+++|+++.++.+...
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  150 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGY  150 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHH
Confidence            88888888888999999999999999999999999999999999999999988876543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.75  E-value=1.5e-17  Score=118.31  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=106.5

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA  102 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (144)
                      ....+..|.+.+   +++.|+++.++..+.+.++..+++++.|++.||+|||+++..+..+.+++.+.+.++++++.+++
T Consensus        26 ~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~  102 (393)
T PRK09705         26 TSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS  102 (393)
T ss_pred             hccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence            567788899988   89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141         103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus       103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      .|+++|++.+...+..+..+.|++| ++|+++++..+.
T Consensus       103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~  139 (393)
T PRK09705        103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSA  139 (393)
T ss_pred             HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHH
Confidence            9999999999998888899999997 779999888764

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.75  E-value=5.2e-18  Score=118.83  Aligned_cols=127  Identities=15%  Similarity=0.111  Sum_probs=108.5

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL   90 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   90 (144)
                      .....+..+. .....+..|.+.+   +++.++++.+++.+...++..+++++.|+++||+|||+.+..+.++..++...
T Consensus         9 ~~~~~~~~~~-~~~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~   84 (377)
T TIGR00890         9 TVIMCFTSGY-VYTWTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTF   84 (377)
T ss_pred             HHHHHHHhhH-HhhhhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHH
Confidence            3333333333 4456778888888   89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          91 IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..++++++.+++.|.+.|++.+...+.......|++| |+|+++.++.....
T Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  135 (377)
T TIGR00890        85 YAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGY  135 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhc
Confidence            9999999999999999999999887777778888887 56998888876543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.75  E-value=2.1e-17  Score=117.74  Aligned_cols=135  Identities=19%  Similarity=0.164  Sum_probs=117.7

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      ++++....+.+..+...+......+.+|.+.+   +++.++++.++..+...++..++.++.|+++||+|||+.+..+..
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   86 (406)
T PRK15402         10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            44555666666666667777878888888877   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ...++......+++++.+++.|++.|++.+...+.....+.|.+|+++|.+..++...
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  144 (406)
T PRK15402         87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMAN  144 (406)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            9998888888899999999999999999988888888999999999999887776554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.75  E-value=1.1e-17  Score=120.31  Aligned_cols=135  Identities=24%  Similarity=0.331  Sum_probs=112.9

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHH-HHHH-----HHHHHHHHHhhHHHHhhhcchhh
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWI-GSLM-----PLSALFGGMAGGPLIESLGRRTT   76 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~i~~~~~g~l~d~~g~r~~   76 (144)
                      .|++......++.+.+.++........|.+.+   +++.++.+.+.. .+..     .++..+++++.|+++||+||||.
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~   88 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG   88 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence            35567778888999999999999999999988   888777665433 2222     23335788999999999999999


Q ss_pred             HhhhchHHHHHHHHHHHhchHH--------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          77 ILSTGLPFIVSFLLIALANGVP--------MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ++.+.+...++...+.++++++        .+++.|+++|++.+...+....+++|++|+|+|++..++.+.
T Consensus        89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~  160 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSA  160 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHH
Confidence            9999999999999999988876        368899999999999888888999999999999999887654

>PRK12382 putative transporter; Provisional

Probab=99.75  E-value=1.7e-17  Score=117.75  Aligned_cols=132  Identities=13%  Similarity=0.126  Sum_probs=106.9

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS   87 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~   87 (144)
                      ...+.+..+..........+.+|.+.++  ++|.|+++.+++.+...++..+++++.|+++||+||||.+..+.+...++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~--~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHH--DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHH--hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            3344445555556667777888876531  78999999999999999999999999999999999999999887776665


Q ss_pred             HHHHH--------HhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          88 FLLIA--------LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        88 ~~~~~--------~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .....        ..++++.+++.|+++|++.+...+....++.|.+|+|+|+++.++.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~  156 (392)
T PRK12382         95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMA  156 (392)
T ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHH
Confidence            43221        1357788999999999999988888888999999999999999887654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.74  E-value=2.7e-17  Score=117.69  Aligned_cols=127  Identities=17%  Similarity=0.151  Sum_probs=111.3

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI   91 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   91 (144)
                      ....+..........+.+|.+.+   +++.+..+.++..+.+.++..+++++.|+++||+|||+.++.+.....++...+
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            34444555677788888998877   899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ..+++++.+++.|+++|++.+...+....+..|.+|+++|++..++....
T Consensus        99 ~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (413)
T PRK15403         99 LFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSI  148 (413)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            99999999999999999998876677778899999999999887765544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.74  E-value=1.4e-17  Score=118.37  Aligned_cols=137  Identities=17%  Similarity=0.136  Sum_probs=113.9

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      |..+....+.+..+..........+.+|.+.++  +++.|+++.+++.+...++..+++++.|+++||+||||.+..+.+
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~   89 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHD--QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLC   89 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHH
Confidence            345556667777777777788888888886542  789999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHh--------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          83 PFIVSFLLIALA--------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        83 ~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ...++...+...        .+++.+++.|+++|++.+...+....+..|..|+|+|+++.++.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  156 (399)
T PRK05122         90 GCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIA  156 (399)
T ss_pred             HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhh
Confidence            877765544332        24667889999999999999888888999999999999998876543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.74  E-value=2e-17  Score=115.14  Aligned_cols=127  Identities=24%  Similarity=0.284  Sum_probs=109.7

Q ss_pred             HHHhhhhhhhhccccccc-ccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141          13 LGSMIVGFASAYTSPAIP-SMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI   91 (144)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   91 (144)
                      +..+..........+..| .+.+   +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.++..++....
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            445556666666777788 5656   899999999999999999999999999999999999999999999999986666


Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .++++.+.+++.|++.|++.+...+....++.|++|+++|++..++.+...
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  130 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGF  130 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHH
T ss_pred             hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchh
Confidence            666777899999999999999999999999999999999999998877653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.73  E-value=1.2e-17  Score=117.42  Aligned_cols=123  Identities=17%  Similarity=0.108  Sum_probs=110.6

Q ss_pred             hhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhch
Q psy6141          17 IVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG   96 (144)
Q Consensus        17 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   96 (144)
                      ....+........|.+.+   +++.++.+.+++.+...++..++.++.|++.||+|||+.+..+.+...++.....++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   81 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA   81 (399)
T ss_pred             HHHHHHHhhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence            334455666667788777   89999999999999999999999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ++.+.+.|++.|++.+...+....++.|++|+|+|++..++.+...
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  127 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQ  127 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998876654

>PRK10133 L-fucose transporter; Provisional

Probab=99.73  E-value=3.1e-17  Score=118.18  Aligned_cols=135  Identities=13%  Similarity=0.098  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      .......+....+..+.......+..|.+.+   +++.++++.++..+.+.++..+++++.|++.||+|||+++..+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~  100 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            4455566677778888888888889999977   8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          84 FIVSFLLI---ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        84 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ..++.+++   ..+++++.+++.|+++|++.|...+..+.++.|..|+++|...+++.+..
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~  161 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF  161 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHH
Confidence            99998775   45789999999999999999999999999999987777776666665544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.73  E-value=4.7e-17  Score=118.34  Aligned_cols=133  Identities=14%  Similarity=0.153  Sum_probs=111.0

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      +++.........+...+......+..|.+.+   +++.+.++.+++.+...++..+++++.|+++||+|||+.+..+.+.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~  110 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLML  110 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            4444445555555556666667777888887   8999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          84 FIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ..++.+...++++++.+++.|++.|++.+... ....+++|++|+++|+++.++.+.
T Consensus       111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~  166 (476)
T PLN00028        111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAG  166 (476)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHH
Confidence            88888888889999999999999999887643 455678999999999999888653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.73  E-value=1.6e-17  Score=117.20  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHH
Q psy6141          22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMIL  101 (144)
Q Consensus        22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (144)
                      ...+.+.+|.+.+   |++.++++.+++.+.+.+++.+++++.|+++||+|||+.+.........+.......++++.++
T Consensus         7 ~~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (368)
T TIGR00903         7 WVTFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL   83 (368)
T ss_pred             HHHHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3456678888888   8999999999999999999999999999999999999877655544444433223337899999


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +.|+++|++.+. ........+|++|+|+|+++.++.+...
T Consensus        84 ~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~  123 (368)
T TIGR00903        84 ACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAM  123 (368)
T ss_pred             HHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            999999999986 4455566799999999999999877654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.73  E-value=4.1e-17  Score=114.46  Aligned_cols=126  Identities=16%  Similarity=0.089  Sum_probs=108.7

Q ss_pred             HHHHHhhhhhhhhcccccccc-cccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPS-MNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL   89 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   89 (144)
                      .++..+..........+..|. +.+   ++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         6 SWFGFFLSFSVWFAFSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             HHHHHHHHHHHHHHhHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            444555555556677788885 555   8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          90 LIALAN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        90 ~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ...+.+ +++.+.+.|+++|++.+. ......+++|++|+++|+++.++...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~  133 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAG  133 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence            888888 999999999999998654 45677899999999999999888663

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.72  E-value=1.2e-17  Score=117.06  Aligned_cols=125  Identities=10%  Similarity=0.036  Sum_probs=112.6

Q ss_pred             HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh
Q psy6141          15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA   94 (144)
Q Consensus        15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~   94 (144)
                      .+...++........|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.++..++.+...++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   80 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS   80 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence            34555666777777888877   899999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          95 NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        95 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+...
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  128 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSH  128 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccc
Confidence            999999999999999999999999999999999999999988776543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.72  E-value=5.5e-17  Score=112.54  Aligned_cols=129  Identities=27%  Similarity=0.359  Sum_probs=116.8

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL   90 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   90 (144)
                      +....+..........+..|.+.+   +.+.++++.+++.+...++..++.++.|+++||+|||+.+..+.+...++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            445566677777888888899888   78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          91 IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ....++++.+.+.|++.|++.+...+....+..|.+|+|+|++..++.+...
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGF  132 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHH
Confidence            8888999999999999999999999999999999999999999998876543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.72  E-value=7.1e-17  Score=114.60  Aligned_cols=135  Identities=19%  Similarity=0.225  Sum_probs=116.1

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      +.++.............+......+.+|.+.+   +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+..
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~   81 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMS   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            34555555556666666677777788898888   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ...++.......++++.+.+.|++.|++.+...+....+..|.+++++|+++.+..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (394)
T PRK11652         82 IFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNM  139 (394)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999888888889999999999999999888778888888999999999887776544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.72  E-value=4.9e-17  Score=116.25  Aligned_cols=133  Identities=15%  Similarity=0.124  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141           7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV   86 (144)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~   86 (144)
                      ....++...+..++......+..|.+.+   +++.++.+.+++.+...+++.++.++.|++.||+|||+.+..+.++.++
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~   80 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYAL   80 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3456677788888888888899999988   8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          87 SFLLIAL---ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        87 ~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +......   .++++.+.+.|++.|++.|..++..+.++.|..|+++|++..++.+...
T Consensus        81 g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (410)
T TIGR00885        81 GAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFN  139 (410)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHH
Confidence            8877543   4578899999999999999999999999999999999999888766543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.72  E-value=3.5e-17  Score=117.75  Aligned_cols=134  Identities=28%  Similarity=0.457  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCC--------cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhH
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPT--------EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTI   77 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~   77 (144)
                      .....+.++.+...++.....+..|...+   +++.+        ..+.+++.+...++..++.++.|+++||+|||+.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~  104 (481)
T TIGR00879        28 LLSLIAAIGGLMFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL  104 (481)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Confidence            33344445556667777777777776665   44444        78999999999999999999999999999999999


Q ss_pred             hhhchHHHHHHHHHHHh---chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          78 LSTGLPFIVSFLLIALA---NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        78 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..+.++..++..+....   .+++.+++.|++.|++.+...+....+++|++|+++|+++.++.+...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  172 (481)
T TIGR00879       105 LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI  172 (481)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHH
Confidence            99999988888887553   345588999999999999999999999999999999999998876543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.71  E-value=3.5e-17  Score=114.27  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=110.1

Q ss_pred             HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH
Q psy6141          13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA   92 (144)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   92 (144)
                      ...+..........+.+|.+.+   +.+.++.+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            4445555555666677788887   7888999999999999999999999999999999999999999888888777777


Q ss_pred             Hhc-----hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          93 LAN-----GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        93 ~~~-----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..+     +++.+++.|++.|++.+...+...+++.|++|+++|++..++.+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
T TIGR00900        83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVR  137 (365)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHH
Confidence            666     89999999999999999999999999999999999999998876653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.71  E-value=5.7e-17  Score=117.14  Aligned_cols=126  Identities=10%  Similarity=0.084  Sum_probs=104.0

Q ss_pred             HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH
Q psy6141          13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA   92 (144)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   92 (144)
                      +.......+........|.+.+   + +.++++.+++.+...++..+++++.|+++||+|||+.++.+.++.+++.+...
T Consensus        36 ~~~~~~~~~~~~~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~  111 (452)
T PRK11273         36 FGYAAYYLVRKNFALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG  111 (452)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHH
Confidence            3333334444445556777665   6 99999999999999999999999999999999999999999998888888777


Q ss_pred             Hh----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          93 LA----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        93 ~~----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +.    .+++.+++.|++.|++.+...+.....+.|++|+++|+++.++.+...
T Consensus       112 ~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  165 (452)
T PRK11273        112 FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH  165 (452)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            64    367788889999999998888877888999999999999998865543

>PRK09952 shikimate transporter; Provisional

Probab=99.71  E-value=6e-17  Score=116.68  Aligned_cols=135  Identities=16%  Similarity=0.113  Sum_probs=107.5

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCC--CCCcchhHHHH-----HHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRV--SPTEEEASWIG-----SLMPLSALFGGMAGGPLIESLGRRTT   76 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~i~~~~~g~l~d~~g~r~~   76 (144)
                      +++......++.+.+.++........|....+  ++  +.++++ +...     +...++..+++++.|+++||+|||+.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNR--EFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            44556667778889999998888776654331  33  455543 4432     34556677899999999999999999


Q ss_pred             HhhhchHHHHHHHHHHHhchHH--------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          77 ILSTGLPFIVSFLLIALANGVP--------MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +..+.++..++...+.+++++.        .+++.|+++|++.|...+....+++|++|+++|++..+..+..
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g  169 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVG  169 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            9999999999999999998876        4888999999999999999999999999999999877765543

>PRK10054 putative transporter; Provisional

Probab=99.70  E-value=1.3e-16  Score=113.59  Aligned_cols=132  Identities=12%  Similarity=0.142  Sum_probs=112.0

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF   88 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   88 (144)
                      ..+.+..+..........+.+|.+.++  ++|.++++.++..+...++..+.+++.|+++||+|||+.++.+.+...++.
T Consensus        10 ~~l~~~~~~~~~g~~~~~~~l~~~l~~--~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~   87 (395)
T PRK10054         10 SALLASSLLLTIGRGATLPFMTIYLSR--QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF   87 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence            344455666666677777788877752  789999999999999999999999999999999999999999988888888


Q ss_pred             HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ....+.++++.+++.+.+.|.+.+...+....+..|..|+++|+++.++.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  141 (395)
T PRK10054         88 IAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTML  141 (395)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Confidence            888888899888888888888777777888899999999999999988876654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.70  E-value=1.9e-16  Score=112.38  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=106.5

Q ss_pred             hhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHH
Q psy6141          20 FASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPM   99 (144)
Q Consensus        20 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   99 (144)
                      .......+.+|.+.+   +++.++.+.++..+...++..++.++.|+++||+|||+.++.+.+...++......+++.+.
T Consensus        17 ~~~~~~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~   93 (392)
T PRK10473         17 AGIDMYLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL   93 (392)
T ss_pred             HHHHHHhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            333444567888888   89999999999999999999999999999999999999999999999999888888899999


Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         100 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +.+.|++.|++.+...+....++.|.+|+++|+++.++.+..
T Consensus        94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  135 (392)
T PRK10473         94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGI  135 (392)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            999999999999988888999999999999999998887654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.69  E-value=3.4e-16  Score=113.37  Aligned_cols=140  Identities=15%  Similarity=0.048  Sum_probs=115.6

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccC-------------------CCCCCCCcchhHHHHHHHHHHHHHHHHh
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQM-------------------GSRVSPTEEEASWIGSLMPLSALFGGMA   63 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~   63 (144)
                      +++.....+.++......+........|.+.++                   ..+++.+..+.+.+.+.+.+++.+++++
T Consensus        16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~   95 (465)
T TIGR00894        16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP   95 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence            456666666666666677777777777666441                   0167888999999999999999999999


Q ss_pred             hHHHHhhhcchhhHhhhchHHHHHHHHHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          64 GGPLIESLGRRTTILSTGLPFIVSFLLIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        64 ~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .|+++||+|||+.+..+.++..++......  ..+++.+++.|+++|++.+...+....+++|++|+++|+++.++.+..
T Consensus        96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  175 (465)
T TIGR00894        96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG  175 (465)
T ss_pred             hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            999999999999999998888887766544  356788999999999999999999999999999999999999987664


Q ss_pred             c
Q psy6141         142 G  142 (144)
Q Consensus       142 ~  142 (144)
                      .
T Consensus       176 ~  176 (465)
T TIGR00894       176 F  176 (465)
T ss_pred             H
Confidence            3

>KOG0254|consensus

Probab=99.69  E-value=2.5e-16  Score=115.49  Aligned_cols=138  Identities=29%  Similarity=0.473  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHhhhhhh--hhcccccccccccCCCCCCCCc----chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh
Q psy6141           5 VLASLTVSLGSMIVGFA--SAYTSPAIPSMNQMGSRVSPTE----EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL   78 (144)
Q Consensus         5 ~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~   78 (144)
                      ...........+..+++  .....+..+.+.++......+.    .+.+++.+...++..+++++.|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33445555666666765  4455555555544211111122    24489999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          79 STGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .+.++..++.++.++++|++++.++|++.|+|.|......+.+.+|..|++.||...+..+...
T Consensus       124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~  187 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFI  187 (513)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988877654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.69  E-value=3.9e-16  Score=112.37  Aligned_cols=132  Identities=10%  Similarity=0.020  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHH
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFI   85 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~   85 (144)
                      +......+.............+..+.+.+  +++++|++|.++..+...+++.+..++.|++.||+|.|+++..+.++..
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~--~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNK--IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34444444444444555566666666654  2799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          86 VSFLLIALA-----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        86 ~~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      +......++     ++++.+++.|++.|++ +...+.....+++++|+++||++.|+...
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g  170 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGG  170 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHH
Confidence            988888876     7999999999999998 66788889999999999999999998853

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.69  E-value=2.2e-16  Score=113.03  Aligned_cols=115  Identities=18%  Similarity=0.123  Sum_probs=105.2

Q ss_pred             hcccccccccccCCCCCCCCcch-hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEE-ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMIL  101 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (144)
                      .......|.+.+   ++|+++++ .+.+.+.+..++.+..++.|+++||+|.|+.+..+.+...+...+..++++...+.
T Consensus        43 ~n~s~a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~  119 (511)
T TIGR00806        43 PGESFITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQ  119 (511)
T ss_pred             chHHHHHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445666666   89999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +.|++.|++.|... ....++.+++|+++|+++.++....
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg  158 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAA  158 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            99999999999998 8999999999999999999887654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.68  E-value=1.5e-16  Score=112.09  Aligned_cols=118  Identities=21%  Similarity=0.292  Sum_probs=108.1

Q ss_pred             hhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHH
Q psy6141          21 ASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMI  100 (144)
Q Consensus        21 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (144)
                      ......|..|.+.+   ++|.++++.++..+...++..++.++.|+++||+|||+.+..+.+...++...+...++++.+
T Consensus         6 ~~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          6 AIDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             HHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            34556688898888   899999999999999999999999999999999999999999999999999999889999999


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .+.|++.|++.+...+....++.|.+|+++|++..++.+..
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLV  123 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            99999999999998899999999999999999999887654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.68  E-value=2e-16  Score=110.83  Aligned_cols=137  Identities=12%  Similarity=0.082  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      |+.....+.+++....+..-.+....|.+.+   +.+.|.+|.+.+.+.+.+.+.++.++.|.++||.++|+.+-.++++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence            4455566667777888888889999999998   8889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141          84 FIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      .++..+.+.++++.+.+.+...+.|..+|.-.|++...++.++|+++||+..++.+...|
T Consensus       104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shN  163 (448)
T COG2271         104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHN  163 (448)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhh
Confidence            999999999999999999999999999999999999999999999999999998887655

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.68  E-value=2.8e-16  Score=111.80  Aligned_cols=125  Identities=11%  Similarity=-0.022  Sum_probs=101.0

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI   91 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   91 (144)
                      ..+.+.............|...+   +++.++.+.+++.+.+.+...+..++.|+++||+||||+++.+.++..++.+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195          9 MAAQFFSALADNALLFAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence            33344444333333333444455   788888899999999999999999999999999999999999999988887776


Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .+..+.   ++.|+++|++.+...|...+++.|++|+|+|+++.++.+...
T Consensus        86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~  133 (393)
T PRK11195         86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGST  133 (393)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            666554   678999999999999999999999999999999999876543

>PRK11043 putative transporter; Provisional

Probab=99.68  E-value=4.9e-16  Score=110.56  Aligned_cols=122  Identities=18%  Similarity=0.149  Sum_probs=105.7

Q ss_pred             HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141          14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL   93 (144)
Q Consensus        14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   93 (144)
                      ......+....+.|..|.+.+   +++.++++.++..+...++..++.+++|+++||+|||+.+..+..+..++.....+
T Consensus        14 ~~~~~~~~~~~~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   90 (401)
T PRK11043         14 LSMLGFLATDMYLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW   90 (401)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            344444556667777888777   89999999999999999999999999999999999999999999888888888888


Q ss_pred             hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141          94 ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLP  138 (144)
Q Consensus        94 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  138 (144)
                      .++++.+.+.|++.|++.+...+.....+.|.+|++++++..+..
T Consensus        91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (401)
T PRK11043         91 VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATI  135 (401)
T ss_pred             hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            999999999999999998887777788999999999887766554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.67  E-value=4.2e-16  Score=111.16  Aligned_cols=131  Identities=15%  Similarity=0.114  Sum_probs=113.3

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL   89 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   89 (144)
                      .+....++.........+.+|.+.++  +.+.++.+.++..+...+...+..++.|+++||+|||+.+..+.....++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         14 FLLIDNMLVVLGFFVVFPLISIRFVD--QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence            33455555566666667777776542  7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          90 LIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .....++++.+.+.|++.|++.+...+...+++.|.+|+|+|+++.++.+...
T Consensus        92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  144 (400)
T PRK11646         92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQD  144 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            98888999999999999999998888888899999999999999999876553

>TIGR00897 2A0118 polyol permease family

Probab=99.67  E-value=5.4e-16  Score=110.56  Aligned_cols=129  Identities=12%  Similarity=0.085  Sum_probs=103.7

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL   89 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   89 (144)
                      ...++.+..........++.|.+.+   +++.++++.++..+.+.++..+++++.|++.||+||||.+..+.....++..
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~   93 (402)
T TIGR00897        17 WGYIGVVVFMTGDGLEQGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA   93 (402)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            3344444444444444456677777   7899999999999999999999999999999999999999998888888765


Q ss_pred             HHH---H-hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          90 LIA---L-ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        90 ~~~---~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ...   . .++++.+++.|.+.|++.+...+.....+.|.+|+|+|++++|+.+..
T Consensus        94 ~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  149 (402)
T TIGR00897        94 AFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAV  149 (402)
T ss_pred             HHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            542   2 247788888999999998887777788889999999999999987654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00898 2A0119 cation transport protein

Probab=99.66  E-value=3.1e-16  Score=114.54  Aligned_cols=112  Identities=20%  Similarity=0.201  Sum_probs=102.1

Q ss_pred             ccccccccCCCCCCCC---cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141          27 PAIPSMNQMGSRVSPT---EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG  103 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (144)
                      +..|.+.+   |++.+   +.+.++..+.+.++.+++.++.|+++||+|||+.++.+.++..++.+...++++++.+.+.
T Consensus       110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  186 (505)
T TIGR00898       110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF  186 (505)
T ss_pred             cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            34566666   88888   8889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      |++.|++.+...+....++.|++|+++|+++.++.+..
T Consensus       187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~  224 (505)
T TIGR00898       187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF  224 (505)
T ss_pred             HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHH
Confidence            99999999999999999999999999999988876543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.64  E-value=1.2e-15  Score=111.02  Aligned_cols=138  Identities=12%  Similarity=0.039  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhchHH
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPF   84 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~~~   84 (144)
                      +..+.+....+...+......+.+|.+.++..++|.+..+.+.+.+.+..+..++.+++|+++|| +|||+++..+.+..
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            44455666677777777777888888876211289999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch---hhhhchhhhhhcc
Q psy6141          85 IVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV---RGTLGLLPTFLGN  143 (144)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~  143 (144)
                      .++.+...++++++.+.+.+.+.|++.|...+...+.++|++|+++   |+++.++.+...+
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~n  151 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSIN  151 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHH
Confidence            9999988888888888889999999999988999999999998764   7777777665443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.64  E-value=3.3e-15  Score=106.25  Aligned_cols=130  Identities=18%  Similarity=0.172  Sum_probs=108.5

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcch-----hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEE-----ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      .....++.+..+.......+.+|.+.+   +++.+..+     .+++.+...++..++.++.|+++||+|||+.+..+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            334455666777777788889999988   77777554     4788899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ...++.......++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.++.+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTG  150 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHH
Confidence            888888888888899999999999998865 4566777889999999999988876543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.63  E-value=1.4e-15  Score=109.54  Aligned_cols=130  Identities=12%  Similarity=0.108  Sum_probs=104.0

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF   88 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   88 (144)
                      ....+................|.+.+    .|.++++.++..+...++..++.++.|+++||+|||+.+..+.++..++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~  105 (438)
T TIGR00712        30 LGIFFGYAAYYLVRKNFALAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM  105 (438)
T ss_pred             HHHHHHHHHHHHHhccHHhhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence            33334444444444445555676554    48999999999999999999999999999999999999998888888877


Q ss_pred             HHHHHh----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          89 LLIALA----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        89 ~~~~~~----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ......    ++++.+.+.|++.|++.+...+.....+.|++|+++|+++.++.+...
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~  163 (438)
T TIGR00712       106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAH  163 (438)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHH
Confidence            766543    456777888999999999888888889999999999999999876543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0252|consensus

Probab=99.63  E-value=8.9e-16  Score=108.57  Aligned_cols=137  Identities=14%  Similarity=0.095  Sum_probs=114.9

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccC-----CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQM-----GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTT   76 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~   76 (144)
                      |++...+.+...+.+.++|+....+...|.+...     .+.-++++...+.+..+..+|.++|+++.|++.||+|||++
T Consensus        37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v  116 (538)
T KOG0252|consen   37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV  116 (538)
T ss_pred             HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence            5677788888999999999999998888776542     01122556677889999999999999999999999999999


Q ss_pred             HhhhchHHHHHHHHHHHhc-------hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141          77 ILSTGLPFIVSFLLIALAN-------GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLP  138 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  138 (144)
                      +...+++.+++.+.++.+.       -.+++.+.|+++|+|.|+-+|...++.+|...++.||...+..
T Consensus       117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaav  185 (538)
T KOG0252|consen  117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAV  185 (538)
T ss_pred             hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEE
Confidence            9999999999998766531       2457888999999999999999999999999999999876653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.62  E-value=1.6e-15  Score=110.70  Aligned_cols=138  Identities=11%  Similarity=0.013  Sum_probs=113.9

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhc
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTG   81 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~   81 (144)
                      ++.+..+.+....+...+..+...+.++.+.++  ++|.+.++..++.+.+.....+..+++|+++|| +||||+++.+.
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~--~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVK--QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            456666677777777777778777778888763  789999999999999888888888999999999 99999999999


Q ss_pred             hHHHHHHHHHHHhchHHH-HHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhhc
Q psy6141          82 LPFIVSFLLIALANGVPM-ILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFLG  142 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~  142 (144)
                      ++..++.+.+.++.+.+. +.+.|.++|++.|...+...+.+.|.+|+++  |+++.++.+...
T Consensus        89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~  152 (489)
T PRK10207         89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSI  152 (489)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHH
Confidence            999999999988766444 5578999999999999989999999999874  466666665544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.61  E-value=7e-15  Score=106.49  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=99.2

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA  102 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (144)
                      .......|.+.+   +++.++++.++..+...++..++.++.|+++||+|||+.++.+.++..++.+.+.++++++.+++
T Consensus        36 ~~~~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~  112 (455)
T TIGR00892        36 KAVTVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYL  112 (455)
T ss_pred             cchhhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Confidence            445667788877   89999999999999999999999999999999999999999999899988888888888888765


Q ss_pred             -HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         103 -GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       103 -~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                       .|++.|++.+...+.....+.|++| ++|+++.++.+...
T Consensus       113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~  152 (455)
T TIGR00892       113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGS  152 (455)
T ss_pred             HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcc
Confidence             5688999988766667778889886 78999998877554

>TIGR00896 CynX cyanate transporter

Probab=99.60  E-value=5.1e-15  Score=103.80  Aligned_cols=114  Identities=17%  Similarity=0.231  Sum_probs=100.3

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA  102 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (144)
                      ....+.+|.+.+   ++|.++++.++..+...++..++.++.|++.||+||||.+..+.+...++.... ..++.+.+++
T Consensus        17 ~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~   92 (355)
T TIGR00896        17 TSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA   92 (355)
T ss_pred             ccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence            556788899888   899999999999999999999999999999999999999999888877777766 6788888899


Q ss_pred             HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .|++.|++.+...+..+....|.+| ++|+++.+..+..
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  130 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMA  130 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHH
Confidence            9999999999888778888889886 5789988887653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.60  E-value=4.5e-15  Score=103.92  Aligned_cols=135  Identities=15%  Similarity=0.019  Sum_probs=109.7

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      +.+..+.................+..+.+.+   ++++|++|.+++.....+...+..++.|.+.||+|.|+....+.++
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            3444444444444444445556666666666   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc---hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141          84 FIVSFLLIALAN---GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus        84 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      ..+..+...++.   +++.+++.+.+.|++.+. .+....++++++|+|++|.++|++. .+|
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN  149 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGN  149 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-ccc
Confidence            999998888864   445999999999999554 5667789999999999999999987 544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.60  E-value=1e-15  Score=114.54  Aligned_cols=131  Identities=9%  Similarity=0.023  Sum_probs=112.6

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF   88 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   88 (144)
                      +..++..+............+|.+.+   +++++..+.+++.+.+.+++.++.++.+++.||.||||.+.++.++.+++.
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            33344555555666777778888887   899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc---------------------------------------------------hHHHHHHHHHHhhhhhhhhhhh
Q psy6141          89 LLIALAN---------------------------------------------------GVPMILAGRCVAGFCVGIASLA  117 (144)
Q Consensus        89 ~~~~~~~---------------------------------------------------~~~~~~~~~~~~g~~~g~~~~~  117 (144)
                      ++.++.+                                                   .+..++++|+++|++.+...+.
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~  192 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL  192 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence            8887642                                                   2446778999999999999999


Q ss_pred             HHHHHhhccCcchhhhhchhhhhhc
Q psy6141         118 LPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       118 ~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..+++.|++|+++|++..++.+...
T Consensus       193 ~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       193 GISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             CchhhhccCCccccHHHHHHHHHHH
Confidence            9999999999999999998877654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PTZ00207 hypothetical protein; Provisional

Probab=99.57  E-value=2.2e-14  Score=106.04  Aligned_cols=134  Identities=15%  Similarity=0.080  Sum_probs=104.2

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      ++|.............+. ...+..+.|.+.+   ++|.|..+.+++.+.. ......+++.|++.||+|+|+++.++.+
T Consensus        25 ~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l   99 (591)
T PTZ00207         25 RRFALLVLGAFCSICTSF-MYAFNLISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT   99 (591)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            455544444433333332 3344455677766   8999999999887763 3445677789999999999999999999


Q ss_pred             HHHHHHHHHHHh------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          83 PFIVSFLLIALA------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        83 ~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ...++.+...++      ++++.+.+.|.+.|++.+...+.....+.++|| ++||++.++.....
T Consensus       100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~  164 (591)
T PTZ00207        100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFT  164 (591)
T ss_pred             HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH
Confidence            999999988886      688999999999999999888888889999997 67899998877654

>KOG0569|consensus

Probab=99.57  E-value=2.9e-14  Score=102.87  Aligned_cols=137  Identities=26%  Similarity=0.455  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccC-----CCCCC--CCcch----hHHHHHHHHHHHHHHHHhhHHHHhhhcch
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQM-----GSRVS--PTEEE----ASWIGSLMPLSALFGGMAGGPLIESLGRR   74 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~--~~~~~----~~~~~~~~~~~~~i~~~~~g~l~d~~g~r   74 (144)
                      ......+++++-.+|.....++-.+.+.+-     .+.++  .++++    .+.+.+.+.+|.++|++..+.++||+|||
T Consensus        11 ~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK   90 (485)
T KOG0569|consen   11 LAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRK   90 (485)
T ss_pred             HHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            344455566667777777776655443331     12333  33332    46678899999999999999999999999


Q ss_pred             hhHhhhchHHHHHHHHHHH---hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          75 TTILSTGLPFIVSFLLIAL---ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..+.+..++...+...+..   .+++.+++++|++.|+..|......+.+++|..|++.||....+.+...
T Consensus        91 ~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~  161 (485)
T KOG0569|consen   91 NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGV  161 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHH
Confidence            9999888888887776655   5788899999999999999999999999999999999999888876654

>KOG0255|consensus

Probab=99.56  E-value=1.2e-14  Score=106.81  Aligned_cols=100  Identities=29%  Similarity=0.292  Sum_probs=94.3

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA  117 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  117 (144)
                      ....+........+.+.+|.++|.+++|+++||+|||++++.+.+...++.+..++++|++.+.+.|++.|++.+.....
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~  191 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV  191 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence            44556677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCcchhhhhchh
Q psy6141         118 LPVYLGETVQPEVRGTLGLL  137 (144)
Q Consensus       118 ~~~~~~~~~~~~~r~~~~~~  137 (144)
                      ...+.+|++++++|+.+..+
T Consensus       192 ~~~~~~E~~~~~~R~~~~~~  211 (521)
T KOG0255|consen  192 GFGLVAEIVSPKQRGLALTL  211 (521)
T ss_pred             hHhhheeecCcchhhHHHHH
Confidence            99999999999999998887

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.56  E-value=7.8e-15  Score=104.99  Aligned_cols=124  Identities=20%  Similarity=0.159  Sum_probs=102.1

Q ss_pred             HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-
Q psy6141          15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-   93 (144)
Q Consensus        15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-   93 (144)
                      .+..........+..|.+.+   +.+.++.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++...... 
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~  102 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN  102 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence            44444555666667888877   77788999999999999999999999999999999999998877776666554432 


Q ss_pred             ----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          94 ----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        94 ----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                          .++++.+.+.|++.|++.+...+.....+.|..|+++|+++.++.+..
T Consensus       103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (417)
T PRK10489        103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLT  154 (417)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHH
Confidence                457788889999999998888888888999999999999988887654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.55  E-value=4e-14  Score=99.61  Aligned_cols=119  Identities=14%  Similarity=0.079  Sum_probs=97.2

Q ss_pred             HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh-hchHHHHHHHHH
Q psy6141          13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS-TGLPFIVSFLLI   91 (144)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~   91 (144)
                      +..+..+.......+.+|.+.++  ++|.++++.+++.+...+...+.+++.|+++||+||||.++. +.....++....
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSE--EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHc--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            34566677777888888887642  799999999999999999999999999999999999987654 455555666777


Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhh
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT  133 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~  133 (144)
                      ..+++++.+++.|++.|.+.+...+....+..|..|+++|++
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~  123 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREA  123 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhh
Confidence            788899988889999888877777888888889888777764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG3764|consensus

Probab=99.54  E-value=1.1e-14  Score=101.57  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=94.5

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141          40 SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALP  119 (144)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  119 (144)
                      +-.+++.|++.....+..++.+++.|.+.||+|+|..++++......+.+++++.+++++++++|.++|++.+.......
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCcc-hhhhhchhhhhhc
Q psy6141         120 VYLGETVQPE-VRGTLGLLPTFLG  142 (144)
Q Consensus       120 ~~~~~~~~~~-~r~~~~~~~~~~~  142 (144)
                      ++++|.+|++ +|++++|..-.+.
T Consensus       182 amlAd~f~~d~er~~vmGialgfi  205 (464)
T KOG3764|consen  182 AMLADVFPEDNERGSVMGIALGFI  205 (464)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHH
Confidence            9999999975 5799988865543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.54  E-value=2.4e-16  Score=113.61  Aligned_cols=131  Identities=27%  Similarity=0.417  Sum_probs=107.2

Q ss_pred             HHHHhhhhhhhhcccccccccccCC-CCCCC-------CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMG-SRVSP-------TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      .++.+..+++........+...... ...+.       ++.+.++..+...+|..+|.++.|.++||+|||+.+..+.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            4455777777777655554443110 01111       223568899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc---hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          84 FIVSFLLIALAN---GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        84 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..++.++..+++   +++.+.++|++.|++.|...+..+.++.|..|+++|++..++.+...
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~  147 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFW  147 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999998   99999999999999999999999999999999999999888777654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00901 2A0125 AmpG-related permease

Probab=99.53  E-value=1e-13  Score=97.26  Aligned_cols=126  Identities=15%  Similarity=0.223  Sum_probs=99.0

Q ss_pred             HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHH-HHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141          15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMP-LSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL   93 (144)
Q Consensus        15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   93 (144)
                      .+.............|.+.+   +.|.++++.+.+..... ++.+++.+++|++.||+|||+.+..+.+...+......+
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~  294 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLL---DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW  294 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444455566788877   67889999888777655 678899999999999999999988887777766554443


Q ss_pred             h-----------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141          94 A-----------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus        94 ~-----------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      .           ++.+.+....++.+++.+...+...++.+|.+|+|+|++..++.+...+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       295 LASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            2           3456677778888999999999999999999999999999999887654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.53  E-value=5.5e-14  Score=102.25  Aligned_cols=139  Identities=15%  Similarity=0.082  Sum_probs=106.6

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhc
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTG   81 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~   81 (144)
                      ++......+........+..+.+..++|.+..+  ++|.++.+.+.+.+.+.....++.+++|+++||+ ||||.+..+.
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~--~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~   83 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTN--QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGA   83 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            344555566666667777777777788888763  6899999999999999999999999999999999 9999999999


Q ss_pred             hHHHHHHHHHHHhc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc--hhhhhchhhhhhcc
Q psy6141          82 LPFIVSFLLIALAN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPE--VRGTLGLLPTFLGN  143 (144)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~  143 (144)
                      ++..++.+.+...+ +...+.+...+..++.|...+..+++++|.+|++  +|.++.++.+...+
T Consensus        84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n  148 (493)
T PRK15462         84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGN  148 (493)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHH
Confidence            99988877665533 2233444444455666666677788999999976  68888888876654

>KOG2615|consensus

Probab=99.51  E-value=9.6e-14  Score=96.46  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=90.9

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141          40 SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALP  119 (144)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  119 (144)
                      +.+....|++.+.+.++..++++.+|.++||+|||.+++.+++..+++..+.+.++|+..+..+|++.|+..|-. .+.-
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHH
Confidence            345567899999999999999999999999999999999999999999999999999977777799999998765 5677


Q ss_pred             HHHhhccCcchhhhhchhhhhhc
Q psy6141         120 VYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       120 ~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ++++|+.++|+|+.+++......
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~  165 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAF  165 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhh
Confidence            89999999999999998876554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.49  E-value=3.6e-13  Score=95.99  Aligned_cols=116  Identities=19%  Similarity=0.172  Sum_probs=96.3

Q ss_pred             cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141          24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG  103 (144)
Q Consensus        24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (144)
                      ....+.|.+.+   +.|.++.+.+...+...++.+++.++.|++.||+|||+.+..+.+...++.......++.+.+.+.
T Consensus       238 ~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (406)
T PRK11551        238 FLLNWLPSLLV---GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLA  314 (406)
T ss_pred             HHHHHHHHHHH---hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            33445678777   678899999999999999999999999999999999999887766666666666666777777777


Q ss_pred             HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .++.|++.+...+....+..|.+|+++|++..++.+...
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  353 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVG  353 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhh
Confidence            788888887778888899999999999999999887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.48  E-value=4.8e-13  Score=97.76  Aligned_cols=119  Identities=15%  Similarity=0.126  Sum_probs=89.8

Q ss_pred             hhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH---HHHhch
Q psy6141          20 FASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL---IALANG   96 (144)
Q Consensus        20 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~---~~~~~~   96 (144)
                      ........+.|.+.++  +++.+..+.........++..++.+..|+++||+|||+.+..+.+...+....   ...+++
T Consensus       264 ~~~~~~~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  341 (490)
T PRK10642        264 VTYYMLLTYMPSYLSH--NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV  341 (490)
T ss_pred             HHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3444455678887752  67888877788888889999999999999999999999888776544433322   122345


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ...+.+.+++.|++.+...+....+..|.+|++.|+++.++.+.
T Consensus       342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~  385 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFN  385 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHH
Confidence            66777888888888777777778888999999999998886443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.47  E-value=4.9e-13  Score=92.76  Aligned_cols=128  Identities=30%  Similarity=0.396  Sum_probs=108.7

Q ss_pred             HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchh-hHhhhchHHHHHHHHH
Q psy6141          13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRT-TILSTGLPFIVSFLLI   91 (144)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~-~~~~~~~~~~~~~~~~   91 (144)
                      ...+.............|.+.++  ..+.++.+.+.......++..++.++.+++.||+|||+ .+..+.....++....
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  259 (352)
T cd06174         182 LAFFLLSFGYYGLLTYLPLYLQE--VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL  259 (352)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            33344444455555667777762  44889999999999999999999999999999999999 8888999989988888


Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ...++.+...+...+.|++.+...+....+..|..|+++|++..++.+...
T Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (352)
T cd06174         260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFG  310 (352)
T ss_pred             HHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            888888888899999999999999999999999999999999998877653

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.47  E-value=9e-14  Score=97.96  Aligned_cols=122  Identities=21%  Similarity=0.237  Sum_probs=90.6

Q ss_pred             hhhhhhcccccccccccCCCC-CCCCcchhHHHHHH-----HHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141          18 VGFASAYTSPAIPSMNQMGSR-VSPTEEEASWIGSL-----MPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI   91 (144)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   91 (144)
                      +.++........+.+.++  . .+.++++.+...+.     ..++..+++++.|+++||+|||+.+..+.++..++....
T Consensus         5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         5 EWFDFYLYGFAAVLVFHT--FFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHH--hcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            344444444444444441  2 12344555444332     334445789999999999999999999999999999888


Q ss_pred             HHhchHH--------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          92 ALANGVP--------MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        92 ~~~~~~~--------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .++++++        .+++.|+++|++.+...+....++.|++|+++|++..+..+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  140 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVG  140 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHH
Confidence            8887764        4788999999999999999999999999999999888776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.46  E-value=5.9e-13  Score=100.98  Aligned_cols=95  Identities=21%  Similarity=0.201  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141          48 WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQ  127 (144)
Q Consensus        48 ~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~  127 (144)
                      ....+..++.+++.++.|+++||+|||+.++.+.++.+++.+...+.++...+++.+++.|++.+...+....+++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34566778899999999999999999999999999999988888888877777888888888888888889999999999


Q ss_pred             cchhhhhchhhhhhc
Q psy6141         128 PEVRGTLGLLPTFLG  142 (144)
Q Consensus       128 ~~~r~~~~~~~~~~~  142 (144)
                      +++|+++.|+.+...
T Consensus       679 t~~Rgta~Gi~~~~~  693 (742)
T TIGR01299       679 SDKRATAFGFLNALC  693 (742)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.46  E-value=7.8e-13  Score=92.54  Aligned_cols=136  Identities=20%  Similarity=0.160  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      .......+....++.++......+.+|.+.+   .++++..|.+.++..+..++.+..++.+++.+|+|+|+.++.+..+
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l   87 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLL   87 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHH
Confidence            3445566677778888889999999999998   8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---HhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          84 FIVSFLLIA---LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        84 ~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .+++..+..   ...++..++.+.++.|.|.+......+.+++...|++...+-+++.+.+.
T Consensus        88 ~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn  149 (422)
T COG0738          88 YAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFN  149 (422)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhh
Confidence            999988874   45788899999999999999999999999999999977777777766554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.46  E-value=9.7e-13  Score=93.25  Aligned_cols=119  Identities=21%  Similarity=0.183  Sum_probs=90.4

Q ss_pred             hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH-HHHHhchHHHH
Q psy6141          22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL-LIALANGVPMI  100 (144)
Q Consensus        22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~  100 (144)
                      ........|.+.++  +.+.+.++.+.+.+...++..++.++.+++.||+|||+.+..+.+...+... .....++.+.+
T Consensus       254 ~~~~~~~~~~~~~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (405)
T TIGR00891       254 SHPIQDLLPTYLKA--DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVL  331 (405)
T ss_pred             HhhhhhhhHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHH
Confidence            33444556776652  6788999999999999999999999999999999999998877665533332 22334555556


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .+..++.+.+.+...+..+.+++|.+|+++|+++.|+.+...
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  373 (405)
T TIGR00891       332 GLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLG  373 (405)
T ss_pred             HHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHH
Confidence            666677777766667778889999999999999999876543

>KOG2532|consensus

Probab=99.45  E-value=2.8e-13  Score=98.06  Aligned_cols=104  Identities=25%  Similarity=0.282  Sum_probs=95.1

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc--hHHHHHHHHHHhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN--GVPMILAGRCVAGFCVGIAS  115 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~  115 (144)
                      +++.++++.+++.+..+.|+++++++.|++.||+|-|+++..+.++.++..++...+.  +++.+++.|+++|++.|...
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            6788999999999999999999999999999999999999999999999988887653  45577899999999999999


Q ss_pred             hhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         116 LALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       116 ~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +......++|.|++||++..++....
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g  172 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAG  172 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHH
Confidence            99999999999999999988876654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.45  E-value=5.3e-13  Score=97.82  Aligned_cols=132  Identities=11%  Similarity=0.031  Sum_probs=101.7

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhchHHHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPFIV   86 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~~~~~   86 (144)
                      .+.+....+...+..+...+.+|.+.++  ++|.++++.+++.+.+........+++|+++|| +|||+.+..+.+...+
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~--~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i  100 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVK--QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI  100 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            4455566666666666677778888752  789999888888777766666666789999999 5999999999999999


Q ss_pred             HHHHHHHhc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhh
Q psy6141          87 SFLLIALAN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFL  141 (144)
Q Consensus        87 ~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~  141 (144)
                      +...+.+++ +.+.+.+.+.++|++.|...+....++.|++|+++  |..+.++.+..
T Consensus       101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~  158 (500)
T PRK09584        101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMS  158 (500)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHH
Confidence            888887764 45667778899999999888888899999998654  34456554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.44  E-value=2e-13  Score=83.10  Aligned_cols=93  Identities=23%  Similarity=0.288  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141          50 GSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE  129 (144)
Q Consensus        50 ~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~  129 (144)
                      .+...++..++.++.|++.||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+....+..|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788999999999999999999999988888888888888888999999999999999999999999999999999


Q ss_pred             hhhhhchhhhhhc
Q psy6141         130 VRGTLGLLPTFLG  142 (144)
Q Consensus       130 ~r~~~~~~~~~~~  142 (144)
                      +|++..++.+...
T Consensus        84 ~~~~~~~~~~~~~   96 (141)
T TIGR00880        84 ERGVALGLMSAGI   96 (141)
T ss_pred             hhhHHHHHHHHhH
Confidence            9999988876543

>TIGR00895 2A0115 benzoate transport

Probab=99.44  E-value=1.4e-12  Score=92.09  Aligned_cols=123  Identities=19%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             hhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhch
Q psy6141          17 IVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG   96 (144)
Q Consensus        17 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   96 (144)
                      ...........+.|.+.+   +.+.++++.+...+...++..++.++.+++.||+|||+......+............++
T Consensus       261 ~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (398)
T TIGR00895       261 MLLVGVYFLTNWLPKLMV---ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS  337 (398)
T ss_pred             HHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            333333444455676666   78888889999999999999999999999999999985544443333333333333556


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .+...+..++.|++.+...+....+..|.+|+++|+++.++.+...
T Consensus       338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  383 (398)
T TIGR00895       338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIG  383 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            6677778889999999999999999999999999999998876643

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.42  E-value=8.8e-13  Score=104.47  Aligned_cols=100  Identities=19%  Similarity=0.035  Sum_probs=86.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH---HhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141          43 EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA---LANGVPMILAGRCVAGFCVGIASLALP  119 (144)
Q Consensus        43 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~~  119 (144)
                      ....+++.+++.++..++.+++|+++||+|||++++.+.++.++..+...   ..++++.+++.|++.|++.+...+...
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  125 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY  125 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence            34568889999999999999999999999999999988766555554433   357789999999999999999999999


Q ss_pred             HHHhhccCcchhhhhchhhhhhc
Q psy6141         120 VYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       120 ~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +++.|++|+++|++++++.+...
T Consensus       126 ~~i~~~~~~~~r~~~~~~~~~~~  148 (1146)
T PRK08633        126 GIIPELVGKENLSRANGLLEAFT  148 (1146)
T ss_pred             hhhHHhcCcccchhhhhHHHHHH
Confidence            99999999999999999887654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.42  E-value=2e-12  Score=93.98  Aligned_cols=133  Identities=17%  Similarity=0.106  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS   87 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~   87 (144)
                      .+...+..+...........+.|.+.++  ++|.+..+.++..+...++..++.+.+|+++||+|||+..........+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~--~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQ--ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            3444444455444445566778988762  68999999999999999999999999999999999998776544433333


Q ss_pred             HHH--HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          88 FLL--IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        88 ~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ...  ....++.+...+.+++.|+..............|.+|+++|+++.|+.+...
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g  394 (467)
T PRK09556        338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFA  394 (467)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence            222  2233456566677777776543333334467789999999999999887654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.41  E-value=2.2e-12  Score=90.12  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhch-HHHHHHHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG-VPMILAGRC  105 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  105 (144)
                      ...|.+.++  .++.++.+.+.......++..++.++.+++.||.+||+.+..+.....+......+.++ .+.+.+..+
T Consensus       232 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSK--YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHH--HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence            456777651  47888999999999999999999999999999999999988877777777666666664 777788889


Q ss_pred             HhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +.|++.+...+....+..|..|+|+|++..++.+...
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLS  346 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            9999999988999999999999999999999887654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=1.2e-12  Score=91.74  Aligned_cols=112  Identities=13%  Similarity=0.013  Sum_probs=89.9

Q ss_pred             cccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchH--HHHHHHHH
Q psy6141          28 AIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGV--PMILAGRC  105 (144)
Q Consensus        28 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  105 (144)
                      ..+.+.+   +.+.++++.+...+...++..++.++.|++.||+|||+.+..+.....++.......++.  ..+.....
T Consensus       227 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       227 LYKPYGQ---SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            4455555   678888888999999999999999999999999999999988888888777766665532  23445567


Q ss_pred             HhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +.|++.+...+..+.+..|.+|+++|++..++.+...
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  340 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAK  340 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHH
Confidence            7788888777777889999999999999998876543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.41  E-value=1.4e-12  Score=93.02  Aligned_cols=125  Identities=16%  Similarity=0.181  Sum_probs=101.5

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-----cchh-hHhhhchHHH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-----GRRT-TILSTGLPFI   85 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----g~r~-~~~~~~~~~~   85 (144)
                      ...++..+.........+|.+.+   +.|.+.++++++......  .+.++++|+++||+     |||| .+..+.+..+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~   79 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLA   79 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHH
Confidence            44566777777888888999998   889999999998777665  69999999999999     8876 5667677777


Q ss_pred             HHHHHHHHh---chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          86 VSFLLIALA---NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        86 ~~~~~~~~~---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ++.....+.   ++++.+.+..++.+...+...+...+++.|++|+|+|+++.++....
T Consensus        80 l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g  138 (402)
T PRK11902         80 ASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLG  138 (402)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHH
Confidence            666666665   35666777777788888888899999999999999999988876653

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.40  E-value=1.8e-12  Score=94.82  Aligned_cols=130  Identities=17%  Similarity=0.238  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-----cchhh-Hhhh
Q psy6141           7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-----GRRTT-ILST   80 (144)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----g~r~~-~~~~   80 (144)
                      .........+..+.......+.+|.+.+   +.+.+.++.+... ...... +.++++|+++||+     ||||. +..+
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~---~~g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~   87 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMT---VENIDLKTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLAT   87 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHH
Confidence            3445555566666667777788898888   7788888888863 233333 6899999999999     99886 5566


Q ss_pred             chHHHHHHHHHHHh---chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          81 GLPFIVSFLLIALA---NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .+...++...+++.   ++++.+.+.+++.+++.+...+...++..|++|+|+|+++.++....
T Consensus        88 ~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g  151 (491)
T PRK11010         88 QLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLG  151 (491)
T ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence            66666666666554   46778888999999999999999999999999999999988877654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.39  E-value=3.2e-12  Score=91.01  Aligned_cols=114  Identities=13%  Similarity=0.096  Sum_probs=87.5

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR  104 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (144)
                      .....|.+.++  +++.++.+.+.+.+...++.+++.++.|+++||+|||+.+..+.....+........++.+.+++.+
T Consensus       235 ~~~~~p~~l~~--~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  312 (393)
T PRK15011        235 YIINMPLFIIN--ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQ  312 (393)
T ss_pred             HHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            33457776652  6788888888888887888889999999999999999988776665555544444566777777788


Q ss_pred             HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ++.+++.|...+..+.+.+|.+|+ +|+++.++++..
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~  348 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNT  348 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHH
Confidence            888888777777777888999986 488888876553

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.39  E-value=4.1e-12  Score=89.53  Aligned_cols=126  Identities=15%  Similarity=0.077  Sum_probs=92.9

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH-H-
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF-L-   89 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~-~-   89 (144)
                      ....+...........+.|.+.++  +.+.++++.+.......++..++.++.|++.||+|||+.+........+.. . 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  302 (394)
T TIGR00883       225 LGLVIATTTTFYLITTYLPTYLTQ--TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL  302 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            333444444444555667877742  678888899999999999999999999999999999998775544443322 1 


Q ss_pred             HHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141          90 LIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus        90 ~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      ....  .++.+.......+.|++.+...+.....+.|.+|+++|+++.++.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  354 (394)
T TIGR00883       303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAY  354 (394)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehh
Confidence            1222  2456666677788888888888889999999999999999888743

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.38  E-value=7.4e-12  Score=88.86  Aligned_cols=123  Identities=12%  Similarity=0.071  Sum_probs=105.9

Q ss_pred             HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH
Q psy6141          13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA   92 (144)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   92 (144)
                      ...+.............|.+.+   +.|.++.+.+.......++.++..++.+++.||+|+|+.+..+.+...+......
T Consensus       212 ~~~~l~~~~~~~~~~~~~~~l~---~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~  288 (382)
T TIGR00902       212 AAVCLIQGAHAAYYGFSAIYWQ---AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG  288 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence            3334334444455556787877   7899999999999999999999999999999999999999999999999988888


Q ss_pred             HhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141          93 LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus        93 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      +.++.+.++....+.|+..+...+....++++. |+++|+++.++++
T Consensus       289 ~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~  334 (382)
T TIGR00902       289 AIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN  334 (382)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence            899999999999999999999999999999998 9999998888765

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.37  E-value=5.5e-12  Score=90.92  Aligned_cols=120  Identities=18%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             hhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH-HH---Hh
Q psy6141          19 GFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL-IA---LA   94 (144)
Q Consensus        19 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~-~~---~~   94 (144)
                      .........+.|.+.++  +.|.+.++.++......++..++.++.|+++||+|||+.+..+.....+.... ..   ..
T Consensus       251 ~~~~~~~~~~~p~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  328 (434)
T PRK15075        251 TVSFYLITVYTPTFGKT--VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33344455668888762  57888888888888899999999999999999999999887654443322211 11   12


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          95 NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        95 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ++.........+.+++.+...+....+..|.+|+++|+++.++.+.
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~  374 (434)
T PRK15075        329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYS  374 (434)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHH
Confidence            3333344445556667676666677889999999999999887543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.36  E-value=2.7e-12  Score=90.09  Aligned_cols=114  Identities=14%  Similarity=0.225  Sum_probs=87.4

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-----cchhhH-hhhchHHHHHHHHHHHh--
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-----GRRTTI-LSTGLPFIVSFLLIALA--   94 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----g~r~~~-~~~~~~~~~~~~~~~~~--   94 (144)
                      ....+..|.+.+   ++|.|.++.++.... .+...+ ++++|++.||+     ||||.+ +.+.+..++......+.  
T Consensus         5 ~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~   79 (356)
T TIGR00901         5 GLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP   79 (356)
T ss_pred             hhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            345567788888   899999999998655 444444 99999999998     898975 55666666665555554  


Q ss_pred             -chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          95 -NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        95 -~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                       .+.+.+....++.+.+.+...+...+++.|++|+|+|+++.++....
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~  127 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVG  127 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHH
Confidence             35556666677788888888889999999999999999998886654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.36  E-value=1.1e-11  Score=89.38  Aligned_cols=119  Identities=16%  Similarity=0.010  Sum_probs=79.4

Q ss_pred             hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH--H--hchH
Q psy6141          22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA--L--ANGV   97 (144)
Q Consensus        22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~--~--~~~~   97 (144)
                      ......+.|.+.++  +.+.+.++.+...+...+...++.++.|+++||+|||+.+....+...+......  .  .++.
T Consensus       259 ~~~~~~~lp~~l~~--~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (432)
T PRK10406        259 FYTFTTYMQKYLVN--TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP  336 (432)
T ss_pred             HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            33445567887752  5788888888888888888889999999999999999987766554433332221  1  1223


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ........+.....+...+..+.+.+|.+|+|+|+++.|+.+...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g  381 (432)
T PRK10406        337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVA  381 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHH
Confidence            222222222223334444556778899999999999999977643

>PRK09952 shikimate transporter; Provisional

Probab=99.34  E-value=1.6e-11  Score=88.72  Aligned_cols=116  Identities=12%  Similarity=-0.021  Sum_probs=81.8

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---h-chHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL---A-NGVP   98 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~-~~~~   98 (144)
                      .....+.|.+.++  +.+.+.++...+.........++.++.|+++||+|||+.+..+.+...+.......   . ++.+
T Consensus       267 ~~~~~~~~~y~~~--~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T PRK09952        267 YIVTAFALNYSTQ--NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFW  344 (438)
T ss_pred             HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence            3344566766652  67777766555555666777889999999999999999988776655554433322   2 2334


Q ss_pred             HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          99 MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        99 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      .+.+..++.+++.+...+..+.+++|.+|+++|+++.++.+.
T Consensus       345 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~  386 (438)
T PRK09952        345 IVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQ  386 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHH
Confidence            444455666788787778888999999999999888777543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.32  E-value=2.3e-11  Score=90.08  Aligned_cols=114  Identities=20%  Similarity=0.287  Sum_probs=95.4

Q ss_pred             hhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHH
Q psy6141          21 ASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMI  100 (144)
Q Consensus        21 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (144)
                      ........+|.+..   +.|-+ +...|+.+...++..++.++.|+++|.+|||..++.+.++..++.+.++-++|...+
T Consensus        59 ~~~~~a~~l~~I~~---diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~  134 (599)
T PF06609_consen   59 VLVLPASILPYINA---DIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTF  134 (599)
T ss_pred             HHhccHHHHHHHHH---hcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHH
Confidence            33444455666665   67655 566788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141         101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus       101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      +.+..+.|++.|.... ....++|..|.|.|....++..
T Consensus       135 iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~  172 (599)
T PF06609_consen  135 IAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIAS  172 (599)
T ss_pred             HHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHH
Confidence            9999999999877664 4556899999999987665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.31  E-value=2.3e-11  Score=86.56  Aligned_cols=112  Identities=23%  Similarity=0.183  Sum_probs=89.5

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR  104 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (144)
                      ...+.|.+.+   +.+.  ++.+...+...++..++.+..|++.||+|+|+.+..+.....++.......++.+.+.+..
T Consensus       235 ~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (399)
T PRK05122        235 IATFITLYYA---ARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGA  309 (399)
T ss_pred             HHHHHHHHHH---Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3344565555   4444  3445666778888899999999999999999998888887777777777777888788888


Q ss_pred             HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ++.|++.+...+.......|..|+++|+++.++.+..
T Consensus       310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  346 (399)
T PRK05122        310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVF  346 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999999888887778888999999999999887654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.30  E-value=1.8e-11  Score=97.22  Aligned_cols=99  Identities=11%  Similarity=0.056  Sum_probs=80.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh---hchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHH
Q psy6141          44 EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS---TGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPV  120 (144)
Q Consensus        44 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  120 (144)
                      ...++..+.+.+...+.++++|+++||+|||+++..   ..+............++++.+++.|+++|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            456778888999999999999999999999997533   22222222222233478999999999999999999999999


Q ss_pred             HHhhccCcchhhhhchhhhhhc
Q psy6141         121 YLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       121 ~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ++.|++|+++|++++++.+...
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~  153 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGT  153 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHH
Confidence            9999999999999999987654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.30  E-value=4e-11  Score=85.96  Aligned_cols=116  Identities=18%  Similarity=0.148  Sum_probs=95.8

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR  104 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (144)
                      .....|.+.++  ..|.++.+.+++.+...++.+++.++.+++.||.++++.+..+.+...++.+.....++.+...+..
T Consensus       242 ~~~~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADE--VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHh--ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            34456777771  4888999999999999999999999999999998888888877777777777667777777777788


Q ss_pred             HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ++.|++.+...+...+++.|..|+++|+++.++.+...
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  357 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQN  357 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence            88898888777777889999999999999999876543

>PRK12382 putative transporter; Provisional

Probab=99.30  E-value=2.2e-11  Score=86.57  Aligned_cols=113  Identities=19%  Similarity=0.066  Sum_probs=90.4

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR  104 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (144)
                      ...+.|.+.+   +.+.+  +.+.......++..+++++.|++.||+|+||.+..+.....++.......++.+...+..
T Consensus       235 ~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (392)
T PRK12382        235 IGTFVSLYFA---SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGA  309 (392)
T ss_pred             HHHHHHHHHH---hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3344555555   44443  345666777888899999999999999999999888888888877777777887778888


Q ss_pred             HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .+.|++.+...+.......|.+|+++|+++.++.+...
T Consensus       310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  347 (392)
T PRK12382        310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQ  347 (392)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            99999988888888888899999999999999877643

>TIGR00889 2A0110 nucleoside transporter

Probab=99.30  E-value=1.3e-11  Score=88.68  Aligned_cols=97  Identities=19%  Similarity=0.238  Sum_probs=82.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc----hHHHHHHHHHHhhhhhhhhhhhH
Q psy6141          43 EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN----GVPMILAGRCVAGFCVGIASLAL  118 (144)
Q Consensus        43 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~  118 (144)
                      ..+.+...+...++..++.++.|++.||+|+|+.+..+.+...+.........    +.+.+.+..++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35668889999999999999999999999999999999888888766665532    23556678899999998888888


Q ss_pred             HHHHhhccCcchhhhhchhhh
Q psy6141         119 PVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus       119 ~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      ..+++|.+|+++|+++.++.+
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~  350 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFT  350 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHH
Confidence            899999999999999999886

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=3.1e-11  Score=85.95  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF   88 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   88 (144)
                      +......+..........+.+|.+.++  +++.++++.+++.+...++..+++++.|+++||+|||+.++.+........
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   82 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHD--VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF   82 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            344455566666667777888888762  689999999999999999999999999999999999999987665554433


Q ss_pred             HHHH---Hhc-----hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141          89 LLIA---LAN-----GVPMILAGRCVAGFCVGIASLALPVYLGETVQ  127 (144)
Q Consensus        89 ~~~~---~~~-----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~  127 (144)
                      ....   ..+     ......+.+++.|++.+...+....+..|..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  129 (396)
T TIGR00882        83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR  129 (396)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh
Confidence            3221   111     23334566788888887777777777766543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.29  E-value=2e-11  Score=86.65  Aligned_cols=125  Identities=13%  Similarity=-0.006  Sum_probs=93.6

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch-HHHHHH-
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL-PFIVSF-   88 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~-~~~~~~-   88 (144)
                      +....+..........|++|.+.+   +++.|.++.+++.+...+...++++++++++||+||++....... ...+.. 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            455666666677888899999998   899999999999999999999999999999999998543322111 111111 


Q ss_pred             HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      .....+++++.+++.|.+++.+.+...+...++..|.  +++|++..+....
T Consensus        86 ~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~  135 (382)
T TIGR00902        86 AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRL  135 (382)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHH
Confidence            2233568899999999999988877778877776654  4667777666543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.29  E-value=1.8e-11  Score=88.97  Aligned_cols=118  Identities=15%  Similarity=0.110  Sum_probs=95.4

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH----hchHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL----ANGVP   98 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~   98 (144)
                      .......|.+.++  ..+.++++.++......++..++.++.|++.||+|||+.+..+.....++.....+    ..+.+
T Consensus       272 ~~~~~~~p~~~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  349 (485)
T TIGR00711       272 YGSFYLLPLYLQQ--VLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFL  349 (485)
T ss_pred             HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Confidence            3344467777762  57889999999999999999999999999999999999988888877777766652    23455


Q ss_pred             HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          99 MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        99 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .......+.|++.+...+.......|..|+++|+++.++.+...
T Consensus       350 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  393 (485)
T TIGR00711       350 AIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTR  393 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHH
Confidence            66667788999998888777778888899999999998877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.29  E-value=3.5e-11  Score=84.70  Aligned_cols=113  Identities=17%  Similarity=0.152  Sum_probs=86.9

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCV  106 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (144)
                      ...|.+.++  +.+.++++.+...........++.++.|++.||+|||+.+..+.+...+........++.+.+.+.+.+
T Consensus       220 ~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (375)
T TIGR00899       220 INMPLLIIH--ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLL  297 (375)
T ss_pred             hhhHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666542  678888888888877777788889999999999999999887766655555555556677777778888


Q ss_pred             hhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         107 AGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       107 ~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .|++.+...+....+..|..|++ |+++.++.+...
T Consensus       298 ~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  332 (375)
T TIGR00899       298 NAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTG  332 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHH
Confidence            99988888888888899998764 568888766543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.29  E-value=3.2e-11  Score=88.09  Aligned_cols=115  Identities=16%  Similarity=0.061  Sum_probs=84.2

Q ss_pred             cccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh--chHHHHHHH
Q psy6141          26 SPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA--NGVPMILAG  103 (144)
Q Consensus        26 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  103 (144)
                      ..++|.+.++  +.+.++.+.+.+.+...++..++.++.|+++||+|||+.+..+.....+..+.....  .+.+...+.
T Consensus       295 ~~~lp~~l~~--~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        295 QALLPTYLKT--DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             HHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            3467887752  788999999999999999999999999999999999999887766655554433332  233333344


Q ss_pred             HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .++.+.......+..+.+++|.+|+++|++..++.+...
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  411 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVG  411 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhh
Confidence            444443333345667788999999999999998876543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.29  E-value=1.6e-11  Score=89.23  Aligned_cols=130  Identities=19%  Similarity=0.190  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh----hhcchhhHhhh-ch
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIE----SLGRRTTILST-GL   82 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~g~r~~~~~~-~~   82 (144)
                      .+.++...+...+......+..+.+.+   +++.++.+.+.+.....+...+.+|+.|+++|    |+||||.++.. ..
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            344444445555556666666777777   89999999999999999999999999999999    59999998875 55


Q ss_pred             HHHHHHHHHHHhchHH-----------------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchh--hhhchhhhh
Q psy6141          83 PFIVSFLLIALANGVP-----------------MILAGRCVAGFCVGIASLALPVYLGETVQPEVR--GTLGLLPTF  140 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~  140 (144)
                      ..+++...+.++++..                 ...++..+..++.....++..++++|..|+++|  +.+.++.+.
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~  159 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF  159 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence            5555556666654432                 223333445557777788889999999998865  456665443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.28  E-value=5.7e-11  Score=85.20  Aligned_cols=114  Identities=14%  Similarity=-0.004  Sum_probs=80.5

Q ss_pred             cccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc--hHHHHHHH
Q psy6141          26 SPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN--GVPMILAG  103 (144)
Q Consensus        26 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  103 (144)
                      ....|.+.+   +.+.++++.+...+...++..++.++.|++.||+|||+.+..+.+...+........+  +.......
T Consensus       251 ~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (426)
T PRK12307        251 FGLLPTYLA---GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGAC  327 (426)
T ss_pred             HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            446777777   6688888889888999999999999999999999999998887776666554443322  22222222


Q ss_pred             HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .+..+....+..+..+.++.|.+|+++|+++.|+.+...
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  366 (426)
T PRK12307        328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLA  366 (426)
T ss_pred             HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHH
Confidence            222222222334556678899999999999998866543

>KOG2533|consensus

Probab=99.27  E-value=1.2e-10  Score=84.99  Aligned_cols=106  Identities=13%  Similarity=0.101  Sum_probs=96.0

Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhh
Q psy6141          37 SRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASL  116 (144)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  116 (144)
                      ++.++...+.+.+.+++.++++++.++.+.+.||++..+.+....+...+..+.....+|++.+++.|++.|+..+...|
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP  153 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP  153 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence            37888889999999999999999999999999999988888777777777776666789999999999999999999999


Q ss_pred             hHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         117 ALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       117 ~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ....++..++.+++|+..+++.+...
T Consensus       154 ~~~~~lg~wy~~~e~g~r~~~~~a~~  179 (495)
T KOG2533|consen  154 GVVAILGNWYGKSERGLRMGIWYASA  179 (495)
T ss_pred             HHHHHHHhhcChhhhhhhHHHHHHhc
Confidence            99999999999999999999887543

>KOG2504|consensus

Probab=99.26  E-value=2.4e-11  Score=89.09  Aligned_cols=115  Identities=20%  Similarity=0.257  Sum_probs=99.7

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA  102 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (144)
                      ..+....+.+.+   +++.+.++.+|+.++......+..|+.+.+.||+|.|.+.+.+.++...+.++..++++.|.+++
T Consensus        63 ~~~Gv~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~l  139 (509)
T KOG2504|consen   63 NSFGLLFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYL  139 (509)
T ss_pred             heehhhHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            334456677777   88999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             -HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         103 -GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       103 -~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                       ..++.|+|.|..+......+..+| +++|+.++|+....
T Consensus       140 t~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~G  178 (509)
T KOG2504|consen  140 TFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSG  178 (509)
T ss_pred             HHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhcc
Confidence             458889999999988888888777 55688888876543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.26  E-value=4.7e-11  Score=85.72  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=85.3

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhH
Q psy6141          39 VSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLAL  118 (144)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  118 (144)
                      .+.+..+.+.+.+...++..++.++.|++.||+|+|+.+..+.++..+......+.++.+.+.+.+.+.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778899999999999999999999999999999988888888887777888888888888999999888877777


Q ss_pred             HHHHhhccCcchhhhhchh
Q psy6141         119 PVYLGETVQPEVRGTLGLL  137 (144)
Q Consensus       119 ~~~~~~~~~~~~r~~~~~~  137 (144)
                      ..++.|.+|++.|++..+.
T Consensus       337 ~~~~~~~~~~~~~a~~~~~  355 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLV  355 (420)
T ss_pred             HHHHHHHcCccceeeeeee
Confidence            8899999999999876543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.26  E-value=4e-11  Score=87.90  Aligned_cols=117  Identities=19%  Similarity=0.099  Sum_probs=94.8

Q ss_pred             cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---hchHHHH
Q psy6141          24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL---ANGVPMI  100 (144)
Q Consensus        24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~  100 (144)
                      ....+.|.+.+.  ..+.++.+.+.......++..++.++.|++.||+|+|+.+..+.++..++......   .++.+..
T Consensus       277 ~~~~~~~~~lq~--v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  354 (495)
T PRK14995        277 GFELLMAQELQF--VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQA  354 (495)
T ss_pred             HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            334466777662  57899999999999999999999999999999999999888887777776655443   2355556


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ....++.|++.|...+.......+..|+++++.+.++.+...
T Consensus       355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  396 (495)
T PRK14995        355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAY  396 (495)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHH
Confidence            667788999999988888888999999999999998876643

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.25  E-value=7.3e-11  Score=84.10  Aligned_cols=120  Identities=13%  Similarity=0.127  Sum_probs=83.8

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHH-HHHHHHHhhHHHHhhhcchhhHh-hhchHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPL-SALFGGMAGGPLIESLGRRTTIL-STGLPFIV   86 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g~r~~~~-~~~~~~~~   86 (144)
                      ....+..+..+.......+.+|.+.+  ++++.++++.++..+...+ +...+.+.+++ .||+||||.++ .+.+...+
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~--~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~   94 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLT--DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL   94 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH
Confidence            34445566666666777788888765  2889999999998765544 66666666666 99999998754 45555556


Q ss_pred             HHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchh
Q psy6141          87 SFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVR  131 (144)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r  131 (144)
                      ......++++++.+++.+.+.+...+...+....+..|..|+++|
T Consensus        95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (393)
T PRK15011         95 ACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR  139 (393)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc
Confidence            666667788888876665555544456677777788887776655

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.24  E-value=5.4e-11  Score=84.42  Aligned_cols=118  Identities=8%  Similarity=-0.087  Sum_probs=87.6

Q ss_pred             HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcch----hhHhhhchHHHHHHHH
Q psy6141          15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRR----TTILSTGLPFIVSFLL   90 (144)
Q Consensus        15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r----~~~~~~~~~~~~~~~~   90 (144)
                      .+..........|.+|.+.+   +.+.|.++.+++.+...++..++++++|++.||+|||    +.+......  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHH
Confidence            45555666888899999998   8899999999999999999999999999999999984    332222111  12222


Q ss_pred             HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141          91 IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      ....++++.+++.|++.|++.+...+...+...++  +++|++..+...
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~  134 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVR  134 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHH
Confidence            33457899998999999998888888777777766  344665555443

>PRK03699 putative transporter; Provisional

Probab=99.24  E-value=9.5e-11  Score=83.51  Aligned_cols=125  Identities=10%  Similarity=0.025  Sum_probs=92.5

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI   91 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   91 (144)
                      .+..+...........+.|.+.++  +++.++++.+...+...++..++.+..+++.||++||+.+........+.....
T Consensus       211 ~~~~~~~~~~~~~~~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~  288 (394)
T PRK03699        211 AIAALLYILAQLTFISWVPEYAQK--KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF  288 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            333333333344455678888852  678999999999999999999999999999999999999887776666666666


Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      ...++.+...+..++.|++.+...+....+..|..|++ +++..+...
T Consensus       289 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~  335 (394)
T PRK03699        289 VNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFIL  335 (394)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHH
Confidence            66677766667778888888877777777778877644 445444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.24  E-value=1.2e-10  Score=82.65  Aligned_cols=111  Identities=13%  Similarity=0.050  Sum_probs=93.0

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR  104 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (144)
                      .....|.+.+   +.|.++.+.+...+...++..+..++.+++.||+|+|+.+..+.+...+........++.+.+++..
T Consensus       224 ~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK11128        224 YYGFSAIYWQ---AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQ  300 (382)
T ss_pred             HHHHHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3345566766   6888988999999988899999999999999999999999988888888777777788888888899


Q ss_pred             HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141         105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus       105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      ++.|++.+...+....+..+. +++++++..++.+
T Consensus       301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  334 (382)
T PRK11128        301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYS  334 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHH
Confidence            999999998888888888887 5666777777664

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.24  E-value=6e-11  Score=83.44  Aligned_cols=131  Identities=23%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh-hchHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS-TGLPFIVS   87 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~-~~~~~~~~   87 (144)
                      .......+.............|.+.++  +.+.++.+.++......++..++.++.|++.||++||+.... ........
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       218 WGLALGQFLVNIGLGFFLTWFPTYLVQ--ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH--HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            334444455555555566677777662  678888899999999999999999999999999999862111 11111111


Q ss_pred             ----HHH---HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          88 ----FLL---IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        88 ----~~~---~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                          ...   ....++.+.......+.+.+.+ ..+....+.+|.+|+++|++..++.+...
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  356 (399)
T TIGR00893       296 GLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLG  356 (399)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHH
Confidence                111   1112233333333344444444 67888899999999999999999877654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.21  E-value=1.3e-10  Score=85.53  Aligned_cols=116  Identities=20%  Similarity=0.204  Sum_probs=103.2

Q ss_pred             cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141          24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG  103 (144)
Q Consensus        24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (144)
                      .....+|.+.++  +++.++...|++.+...+|.+++....+++.+|+++++.+..+.+..++..+..++.++.+...+.
T Consensus       236 a~~aLlPl~a~~--~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~  313 (524)
T PF05977_consen  236 AVWALLPLFARD--VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA  313 (524)
T ss_pred             HHHHhhhHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            334567877662  788899999999999999999999999999999999999888888888888888999999988888


Q ss_pred             HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .++.|++........++..++..|++.||+..++++..
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~  351 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMV  351 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHH
Confidence            99999999988888999999999999999999988754

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.20  E-value=2.5e-10  Score=83.21  Aligned_cols=136  Identities=12%  Similarity=0.082  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcch--hhHhhhch
Q psy6141           5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRR--TTILSTGL   82 (144)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r--~~~~~~~~   82 (144)
                      ...+....++.++..-....+......+.+  ++++++..+...+.....+..++|.+++|++.||+|.|  +++..+.+
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~--~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYAT--EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            334444445555444444444445555655  38999999999999999999999999999999999999  78777766


Q ss_pred             HHHHHHHHHHH--------hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          83 PFIVSFLLIAL--------ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        83 ~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ...+..+.-.+        .++.+.+.+...+.|+..|..++..-++.+|+.|+++.+...|++....
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~g  425 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITG  425 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            66444443333        5677888888999999999999999999999999999999999887653

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.20  E-value=1e-10  Score=83.92  Aligned_cols=79  Identities=18%  Similarity=-0.011  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141           7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV   86 (144)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~   86 (144)
                      ..+......+..........+++|.+.++  ++|.++.+.+.+.+...++..+++++.|+++||+|||+.++.+.....+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHD--INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            33444455566666566778888888873  6899999999999999999999999999999999999998876555444


Q ss_pred             H
Q psy6141          87 S   87 (144)
Q Consensus        87 ~   87 (144)
                      .
T Consensus        89 ~   89 (420)
T PRK09528         89 L   89 (420)
T ss_pred             H
Confidence            3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.20  E-value=1e-10  Score=83.31  Aligned_cols=96  Identities=14%  Similarity=0.128  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhc
Q psy6141          46 ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGET  125 (144)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~  125 (144)
                      .+.+.....++..++.+..|++.||+|||+.+..+.....+..+.....++.+.+.+.+++.|++.+...+.......|.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45556667788889999999999999999999888887777777666677888888889999999999888888889999


Q ss_pred             cCcchhhhhchhhhhh
Q psy6141         126 VQPEVRGTLGLLPTFL  141 (144)
Q Consensus       126 ~~~~~r~~~~~~~~~~  141 (144)
                      .|+++|++..++.+..
T Consensus       340 ~~~~~~g~~~~~~~~~  355 (408)
T PRK09874        340 SSNQIAGRIFSYNQSF  355 (408)
T ss_pred             CCcccceeeehHHHHH
Confidence            9999999988876554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.20  E-value=1.3e-10  Score=83.55  Aligned_cols=108  Identities=8%  Similarity=-0.005  Sum_probs=85.6

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhhchHHHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-RTTILSTGLPFIVSFL   89 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~   89 (144)
                      ++...+.+........+.++.+.+  +++|.+.++.|++.+...++.+++++++|+++||+|| |+.+..+.+...+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~--~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMS--KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            455566666667777677777665  2789999999999999999999999999999999965 7677777777777777


Q ss_pred             HHHHhchHHHHHHHHHHhhhhhhhhhhhHHH
Q psy6141          90 LIALANGVPMILAGRCVAGFCVGIASLALPV  120 (144)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  120 (144)
                      ...+.++++.+.+.|.+.|++.+...+...+
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  115 (418)
T TIGR00889        85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNS  115 (418)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHccHHHHHHH
Confidence            7778888998888898888876655554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.19  E-value=9.7e-11  Score=93.05  Aligned_cols=116  Identities=14%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             ccccccccccCCCCCCCCcc-hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEE-EASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG  103 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (144)
                      ....+|.+.++  .++.+.. +.+++.+...++.+++.++.+++.||+++|+.+.++.+..+++.+...+..+.+.+.+.
T Consensus       251 ~~~~~~~~~~~--~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (1146)
T PRK08633        251 AQANFPAYAKE--VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVL  328 (1146)
T ss_pred             HHHhhHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            33455666552  6788888 89999999999999999999999999999998888888877777777777788888888


Q ss_pred             HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .++.|++.+...+...+++.+..|+++|+++.++.+...
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~  367 (1146)
T PRK08633        329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQ  367 (1146)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHH
Confidence            899999999888888999999999999999988876543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.19  E-value=2.2e-10  Score=84.15  Aligned_cols=121  Identities=13%  Similarity=0.005  Sum_probs=73.8

Q ss_pred             hhhhhcccccccccccCCCCCCCCcchhH------------HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141          19 GFASAYTSPAIPSMNQMGSRVSPTEEEAS------------WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV   86 (144)
Q Consensus        19 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~   86 (144)
                      .........+.|.+.+   +.|.++.+.+            .......++.+++.+..+++.||+|||+.++.+.....+
T Consensus       301 ~~~~y~~~~~~p~i~~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~  377 (502)
T TIGR00887       301 DIAFYGVNLNQKVILS---AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTV  377 (502)
T ss_pred             HHHHHccccccHHHHH---HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Confidence            3333445556777766   5565543211            123344556777889999999999999998887777666


Q ss_pred             HHHHHHHhc----hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          87 SFLLIALAN----GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        87 ~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +........    +...+........+...+..+....+.+|.+|++.|+++.++.+...
T Consensus       378 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~  437 (502)
T TIGR00887       378 LFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASG  437 (502)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHh
Confidence            655544321    11111111111122222234566778899999999999999877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10504 putative transporter; Provisional

Probab=99.18  E-value=1.7e-10  Score=83.92  Aligned_cols=117  Identities=12%  Similarity=0.059  Sum_probs=91.3

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh---chHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA---NGVPM   99 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~   99 (144)
                      .......|.+.++  ..+.++.+.++......++..++.++.+++.||+|+|+.+..+.....+........   ++.+.
T Consensus       278 ~~~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (471)
T PRK10504        278 GMLPFMTPVFLQI--GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYL  355 (471)
T ss_pred             HHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            3344456766652  578888899999999999999999999999999999999988888777766655542   33334


Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         100 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +.+..++.|++.+...+..+....+..|+++|+.+.++.+..
T Consensus       356 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  397 (471)
T PRK10504        356 LPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMI  397 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence            445567778888888888889999999999999998887654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.18  E-value=2.3e-10  Score=82.50  Aligned_cols=117  Identities=11%  Similarity=0.051  Sum_probs=82.5

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-----hc--
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-----AN--   95 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~--   95 (144)
                      .....+.|.+.+   +.+.+.++.+.......++..++.++.++++||+|||+.+..+.+...++......     .+  
T Consensus       301 ~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (481)
T TIGR00879       301 NAIMYYSPTIFE---NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS  377 (481)
T ss_pred             eehHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            334445677766   77888888888899999999999999999999999999998887777776665542     11  


Q ss_pred             ----hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          96 ----GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        96 ----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                          +...+....++.+.......+....+..|.+|+++|+++.++.+...
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  428 (481)
T TIGR00879       378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN  428 (481)
T ss_pred             ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHH
Confidence                22222222222222222334556677799999999999998876543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.18  E-value=1.8e-10  Score=84.82  Aligned_cols=114  Identities=17%  Similarity=0.140  Sum_probs=94.2

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-----hchHHHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-----ANGVPMIL  101 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  101 (144)
                      ...+.+..   +..-|+...+++.....+-.++..+++|.++||++|||.++.+-+...+.......     ..+.+.++
T Consensus        31 va~~wlv~---~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll  107 (524)
T PF05977_consen   31 VALAWLVT---QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLL  107 (524)
T ss_pred             HHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHH
Confidence            33444444   55678889999999999999999999999999999999999888777665444332     24678888


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141         102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus       102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      +..++.|++.....|..++++.|+.|+++...+.++.+...+
T Consensus       108 ~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~n  149 (524)
T PF05977_consen  108 ILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFN  149 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999988876543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00897 2A0118 polyol permease family

Probab=99.17  E-value=3e-10  Score=81.16  Aligned_cols=123  Identities=12%  Similarity=0.040  Sum_probs=84.6

Q ss_pred             HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh-hhchHHHHHHHHHHH
Q psy6141          15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL-STGLPFIVSFLLIAL   93 (144)
Q Consensus        15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~~~~~~   93 (144)
                      .+...........+.|.+.+   +.+.++.+.+.......++..++.+..|+++||+|||+... .+.+...+.......
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~  307 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVA---ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY  307 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            33333344445557788877   78899889888888899999999999999999999988764 222333332222221


Q ss_pred             -----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          94 -----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        94 -----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                           .++.+...+..++.|++.+...+ ......|.. +++|+++.|+.+...
T Consensus       308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~  359 (402)
T TIGR00897       308 IPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSA  359 (402)
T ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHH
Confidence                 23566666777888888776544 445667765 468999999877654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.17  E-value=2.3e-10  Score=83.10  Aligned_cols=124  Identities=17%  Similarity=0.060  Sum_probs=93.1

Q ss_pred             hhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhHhhh--chHHHHHHHHH
Q psy6141          16 MIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTILST--GLPFIVSFLLI   91 (144)
Q Consensus        16 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~~~~--~~~~~~~~~~~   91 (144)
                      +...........++|.+.+   +.+.++.+.+...+...++.+++.++.|++.||.  ++|+.....  .+......+..
T Consensus       251 ~l~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~  327 (455)
T TIGR00892       251 VIMFLGFFAPIIFLVPYAK---DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC  327 (455)
T ss_pred             HHHHHHccchHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444456677777   6789999999999999999999999999999983  334333332  23333334444


Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ...++++.+.+.+++.|++.+...+.....+.|.+|++++++..++.+...
T Consensus       328 ~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  378 (455)
T TIGR00892       328 ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVE  378 (455)
T ss_pred             HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHH
Confidence            567788888888999999999888888999999999999999998887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.16  E-value=2.7e-10  Score=82.86  Aligned_cols=112  Identities=12%  Similarity=0.072  Sum_probs=81.7

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh--chH-H-HHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA--NGV-P-MILA  102 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~  102 (144)
                      .+.|.+.+   +.+.+.++..+......+...++.++.+++.||+|||+.++.+.+..+++.+.....  ++. + ....
T Consensus       292 ~~~p~i~~---~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        292 YYAPEIFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHH---HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            34577666   678887777777777888899999999999999999999999888888877665432  121 1 2222


Q ss_pred             HHHHhhhhhhh-hhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         103 GRCVAGFCVGI-ASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       103 ~~~~~g~~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ...+.+.+.+. ..+..+.+++|.+|+++|+++.++.+..
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  408 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA  408 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHH
Confidence            33334444332 2356788999999999999999987654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.16  E-value=5.9e-11  Score=82.63  Aligned_cols=120  Identities=25%  Similarity=0.279  Sum_probs=95.7

Q ss_pred             hhhcccccccccccCCCCCCCC-cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---hch
Q psy6141          21 ASAYTSPAIPSMNQMGSRVSPT-EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL---ANG   96 (144)
Q Consensus        21 ~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~~~   96 (144)
                      .........|.+.++  +++.+ ..+.+...+...+...++.++.+++.||+++|+..........+.......   .++
T Consensus       221 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQE--VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSS  298 (352)
T ss_dssp             HHHHHHHHHHHHCCH--HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCH
T ss_pred             HHHHhhcccchhhhh--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334455667776331  67788 788899999999999999999999999999988877766666665555443   345


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .....+..++.|++.+...+....+..|..|+|+|+++.++.+...
T Consensus       299 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  344 (352)
T PF07690_consen  299 PVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIG  344 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            6677777888999999999999999999999999999999887654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.14  E-value=4.6e-10  Score=80.08  Aligned_cols=124  Identities=15%  Similarity=0.142  Sum_probs=89.0

Q ss_pred             HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141          14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL   93 (144)
Q Consensus        14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   93 (144)
                      ..............+.|.+.+   +.+.+.++.+...+...++.+++.+..+++.||.|||+....+..+..++......
T Consensus       213 ~~~~~~~~~~~~~~~lp~~l~---~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~  289 (393)
T PRK09705        213 YFGLINGGYASLIAWLPAFYI---EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW  289 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence            333334444455567788887   67899999999999999999999999999999999999988877666666554433


Q ss_pred             -hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhhc
Q psy6141          94 -ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFLG  142 (144)
Q Consensus        94 -~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~  142 (144)
                       .++.....  ..+.|++.+...+.......|..+ +++|++..++.+...
T Consensus       290 ~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  338 (393)
T PRK09705        290 LPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIG  338 (393)
T ss_pred             ccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence             22222222  245677777777777666677765 678899888766543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.14  E-value=5.5e-10  Score=79.45  Aligned_cols=110  Identities=15%  Similarity=0.055  Sum_probs=80.7

Q ss_pred             cccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH-HHHHhchHHHHHHHHHH
Q psy6141          28 AIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL-LIALANGVPMILAGRCV  106 (144)
Q Consensus        28 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  106 (144)
                      +.|.+.++  +.+.++.+.+...+...++.+++.++.++++||++||+... +......... .....++.+.+.+..++
T Consensus       227 ~~~~~l~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l  303 (390)
T PRK03545        227 YIEPFVQQ--VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIF  303 (390)
T ss_pred             HHHHHHHH--hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            34444441  57888889999999999999999999999999999887544 3333333333 33445677777778888


Q ss_pred             hhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         107 AGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       107 ~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .|++.+...+.....+.|..| ++|+++.++.+..
T Consensus       304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~  337 (390)
T PRK03545        304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGI  337 (390)
T ss_pred             HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence            898877766667778888876 5788888776543

>TIGR00896 CynX cyanate transporter

Probab=99.14  E-value=7e-10  Score=77.92  Aligned_cols=115  Identities=13%  Similarity=0.053  Sum_probs=83.7

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhchHHHHHHHHHHHhchHHHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGLPFIVSFLLIALANGVPMIL  101 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (144)
                      .....+.|.+.+   +.+.++++.+...+...++.+++.++.|++.||+ +||+.+..+.....++.....+.++.....
T Consensus       214 ~~~~~~lp~~~~---~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T TIGR00896       214 YSLIGWLPAILI---SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA  290 (355)
T ss_pred             HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            344456788887   6788999999999999999999999999999999 456666666667766666565544332222


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhh
Q psy6141         102 AGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFL  141 (144)
Q Consensus       102 ~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~  141 (144)
                       ...+.|++.|...+.....+.+..+ +++++...++.+..
T Consensus       291 -~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  330 (355)
T TIGR00896       291 -WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSI  330 (355)
T ss_pred             -HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence             3467789988888877676665554 56678777775543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.13  E-value=5e-10  Score=79.46  Aligned_cols=107  Identities=10%  Similarity=0.072  Sum_probs=81.2

Q ss_pred             cccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHH
Q psy6141          26 SPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRC  105 (144)
Q Consensus        26 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
                      ..++|.+.+   +.+.++++.+...+...++..+++++.|++.||+|+|+.+..+.....++.....  . .........
T Consensus       220 ~~~lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~  293 (381)
T PRK03633        220 YGLMPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALF  293 (381)
T ss_pred             HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHH
Confidence            345788777   6788888899999999999999999999999999999988877776666554332  1 223334566


Q ss_pred             HhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141         106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLP  138 (144)
Q Consensus       106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  138 (144)
                      +.|++.....+.......|..|+++++...+..
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  326 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQAL  326 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            777776677788888889999988777655543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.13  E-value=4.8e-10  Score=80.48  Aligned_cols=130  Identities=13%  Similarity=0.060  Sum_probs=81.9

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCC--CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhh-HhhhchHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRV--SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTT-ILSTGLPFIVS   87 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~-~~~~~~~~~~~   87 (144)
                      .....+...........+.|.+.+   +.  +.++.+.+.......++..++.+..|+++||+++|+. .....+...++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~l~---~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~  323 (412)
T TIGR02332       247 YTLAYFCLTNTLSAINIWTPQILQ---SFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG  323 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH
Confidence            344444444555556678899887   43  5677788888999999999999999999999997775 33333333333


Q ss_pred             HHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141          88 FLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      .......++.........+.+++.....+.......|.+|+|+|+++.|+.+...+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~  379 (412)
T TIGR02332       324 WLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGN  379 (412)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhh
Confidence            32222222322222222222333322233444555788999999999998876653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.11  E-value=5.5e-11  Score=85.51  Aligned_cols=122  Identities=11%  Similarity=0.130  Sum_probs=90.1

Q ss_pred             hhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhh-HhhhchHHHHHHHHHH
Q psy6141          18 VGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTT-ILSTGLPFIVSFLLIA   92 (144)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~-~~~~~~~~~~~~~~~~   92 (144)
                      .+.......++++.+..+  ++|.++.+.+.+.+...+...+..|+.|+++||    +||||. ++.+....+++...+.
T Consensus        11 ~~~~~~~~~~~l~~~~~~--~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792        11 NNFIFAIVSTYLLFFYTD--VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            334444444555555552  789999999999999999999999999999998    677565 5566677777766666


Q ss_pred             Hhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhcc-Ccchhhhhchhhhhh
Q psy6141          93 LANG------VPMILAGRCVAGFCVGIASLALPVYLGETV-QPEVRGTLGLLPTFL  141 (144)
Q Consensus        93 ~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~  141 (144)
                      ..++      ...+.+.+++.+.+.+....+..++..|.. |+++|++..++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~  144 (437)
T TIGR00792        89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFG  144 (437)
T ss_pred             hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHH
Confidence            5443      345666777788888777777778888887 578899887776543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.11  E-value=1.6e-09  Score=78.01  Aligned_cols=100  Identities=23%  Similarity=0.361  Sum_probs=78.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-chHHHHHHHHHHhhhhhhhhhhhHHH
Q psy6141          42 TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-NGVPMILAGRCVAGFCVGIASLALPV  120 (144)
Q Consensus        42 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~  120 (144)
                      ++.+.+.......++.+++.++++++.||+|+|+.+..+..+.+++.....+. ++.+.+.+..++.|++.+...+..++
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777778899999999999999999999999998888777776666554 45566667778889999888888889


Q ss_pred             HHhhccC-------cchhhhhchhhhhh
Q psy6141         121 YLGETVQ-------PEVRGTLGLLPTFL  141 (144)
Q Consensus       121 ~~~~~~~-------~~~r~~~~~~~~~~  141 (144)
                      .++|..|       ++++|...++.+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~  362 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFV  362 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence            9988876       34567777776654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.11  E-value=1.2e-09  Score=77.19  Aligned_cols=113  Identities=20%  Similarity=0.232  Sum_probs=85.9

Q ss_pred             cccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-----chHHHH
Q psy6141          26 SPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-----NGVPMI  100 (144)
Q Consensus        26 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~  100 (144)
                      ....|.+.++  +.+.++++.+.+.....++..++.++.+++.||+|+|+.+..+.....++.......     ++.+..
T Consensus       226 ~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (385)
T TIGR00710       226 FSGAPFVYID--IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI  303 (385)
T ss_pred             HHcChHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            3345655542  678899999999999999999999999999999999999888777766665555432     233444


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .....+.|++.+...+.......|..| ++|+++.++.+..
T Consensus       304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  343 (385)
T TIGR00710       304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTL  343 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence            555677888888888888888888876 5788888876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.10  E-value=4.3e-10  Score=79.03  Aligned_cols=117  Identities=16%  Similarity=0.155  Sum_probs=84.2

Q ss_pred             cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH--hc--hHHH
Q psy6141          24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL--AN--GVPM   99 (144)
Q Consensus        24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--~~--~~~~   99 (144)
                      ......|.+.++  .++.++++.+.......+...++.++.|++.||+|+|+....+......+......  ..  +.+.
T Consensus       243 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (366)
T TIGR00886       243 GVSSIFAMFFKD--QFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAV  320 (366)
T ss_pred             HHHHHHHHHHHH--HcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence            344556667652  67888899998899999999999999999999999998877766665555544443  22  4544


Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141         100 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus       100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      ..+...+.++..|...+.......|..| +++++..|+.+...+
T Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~  363 (366)
T TIGR00886       321 FIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGN  363 (366)
T ss_pred             HHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhcc
Confidence            4444455555555555566677788876 689999998877654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.10  E-value=1.1e-09  Score=79.39  Aligned_cols=130  Identities=14%  Similarity=0.094  Sum_probs=81.2

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhHh-hhchHHHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTIL-STGLPFIV   86 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~~-~~~~~~~~   86 (144)
                      ...+..+...........+.|.+.++  +.+.+.++.+.......++..++.++.|+++||+  +||+... ....+..+
T Consensus       257 ~~~l~~~~~~~~~~~~~~~~P~~l~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~  334 (452)
T PRK11273        257 YIAIANVFVYLLRYGILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  334 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence            33344444443344455678888872  5788888888888889999999999999999999  4454322 22222223


Q ss_pred             HHHHHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          87 SFLLIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        87 ~~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +......  ..+.+...+..+..|............+..|.+|+++|+++.|+.+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  391 (452)
T PRK11273        335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  391 (452)
T ss_pred             HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence            2222222  234444444445555543332333445678999999999999987654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.08  E-value=9.7e-10  Score=77.92  Aligned_cols=128  Identities=13%  Similarity=0.046  Sum_probs=79.1

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcch---hhHhh-hchHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRR---TTILS-TGLPF   84 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r---~~~~~-~~~~~   84 (144)
                      +......+...........++|.+.+   +.+.+.+ .+.......+...   +..++++||.+||   +.... ..+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~---~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~~~r~~~~~~~~~~~  267 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALR---PAGLEDI-AGDAVALAILAGL---IGVAVIPDRVARAGLRSIYIRAAALLI  267 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCChH-HHHHHHHHHHHHH---HHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence            44444455555555566678999998   6666654 4444444444444   4457888887653   33222 33333


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141          85 IVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      ++........++.....+...+.+++.....+..+.+.+|.+|++.|+++.|+.+..++
T Consensus       268 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~  326 (368)
T TIGR00903       268 AAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSR  326 (368)
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHH
Confidence            33333334444444444455666777777777788899999999999999999887653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.07  E-value=1.2e-09  Score=76.58  Aligned_cols=130  Identities=26%  Similarity=0.223  Sum_probs=84.5

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhh-c-hHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-RTTILST-G-LPFIVS   87 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~-~-~~~~~~   87 (144)
                      ..+..+...........+.|.+.++  +.+.++++.+...+...++..++.++.+++.||..+ |+..... . ......
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~  298 (379)
T TIGR00881       221 ISLGYVFVYVVRTGILDWSPLYLTQ--EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS  298 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            3334444444444455567777652  678899999999999999999999999999998643 3322211 1 111122


Q ss_pred             HHHHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          88 FLLIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        88 ~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ......  ..+.+...+..++.|.......+....+..|.+|+++|+++.++.+...
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  355 (379)
T TIGR00881       299 LLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFA  355 (379)
T ss_pred             HHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence            222222  2344455556666776655555666778899999999999999887654

>TIGR00898 2A0119 cation transport protein

Probab=99.07  E-value=2.6e-09  Score=78.32  Aligned_cols=93  Identities=22%  Similarity=0.094  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchH--HHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141          50 GSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGV--PMILAGRCVAGFCVGIASLALPVYLGETVQ  127 (144)
Q Consensus        50 ~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~  127 (144)
                      .....+..+++.++.+++.||+|||+.+..+.+..+++.+...+.++.  +...+..++.+++.+...+....+.+|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344566778889999999999999999999888888877766665433  444445566667777777888899999999


Q ss_pred             cchhhhhchhhhhhc
Q psy6141         128 PEVRGTLGLLPTFLG  142 (144)
Q Consensus       128 ~~~r~~~~~~~~~~~  142 (144)
                      ++.|+++.++.+...
T Consensus       441 ~~~r~~~~g~~~~~~  455 (505)
T TIGR00898       441 TVVRNLGVGVCSTMA  455 (505)
T ss_pred             HHHHhhhHhHHHHHH
Confidence            999999998877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.06  E-value=5.2e-10  Score=89.10  Aligned_cols=123  Identities=15%  Similarity=0.054  Sum_probs=94.5

Q ss_pred             hhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh---
Q psy6141          18 VGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA---   94 (144)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---   94 (144)
                      ............|.+.++  .++.++.+.+++.+...++.+++.++.|+++|+.++++.+..+.++..+..+...+.   
T Consensus       237 ~~~~~~~~~~~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (1140)
T PRK06814        237 FWLVGAVVLSQLPLLAKE--TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSS  314 (1140)
T ss_pred             HHHHHHHHHHHhHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccc
Confidence            333334444567877762  578899999999999999999999999999998887776555555544444333332   


Q ss_pred             -----------------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          95 -----------------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        95 -----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                                       ++.+.+.+..++.|++.+...+...+.+++..|+++||++.|..+...
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~  379 (1140)
T PRK06814        315 VPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN  379 (1140)
T ss_pred             cccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH
Confidence                             566777778888999999988889999999999999999999877653

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.03  E-value=2.1e-09  Score=76.82  Aligned_cols=112  Identities=19%  Similarity=0.143  Sum_probs=83.6

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-----chHHHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-----NGVPMIL  101 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  101 (144)
                      ...|.+.++  +++.++.+.++......++..++.+..+++.||+++|+.+..+.+...++.......     ++.+.+.
T Consensus       236 ~~~p~~~~~--~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  313 (406)
T PRK15402        236 ALSPVILIS--GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT  313 (406)
T ss_pred             HHhHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence            345665441  678888888888888888899999999999999999999888877776666655442     3456667


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +...+.|++.+...+......... ++++|++..+..+..
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~  352 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGML  352 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHH
Confidence            778888998887776665554433 458899988887654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.03  E-value=4.8e-09  Score=74.81  Aligned_cols=98  Identities=12%  Similarity=0.158  Sum_probs=80.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141          40 SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALP  119 (144)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  119 (144)
                      +.+..+.+...+...+...++.+..+++.||+|+|+.+..+..+..+........++.+.+.+..++.|++.+.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556778888888899999999999999999999999888888888777667778888888888999988776666666


Q ss_pred             HHHhhccCcchhhhhchh
Q psy6141         120 VYLGETVQPEVRGTLGLL  137 (144)
Q Consensus       120 ~~~~~~~~~~~r~~~~~~  137 (144)
                      .+..|..|++.+++..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~  347 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLI  347 (396)
T ss_pred             HHHHHhCCcceEEEeehH
Confidence            777888888887775544

>KOG2325|consensus

Probab=99.02  E-value=2.5e-09  Score=77.44  Aligned_cols=137  Identities=18%  Similarity=0.106  Sum_probs=111.4

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhh
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-RTTILST   80 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~   80 (144)
                      +.+|+.+.+..+.+++.........+..-.|.+. -|.+.+.+-.|++.++..++..++++..|+...|.+. |++++.+
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~-lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQK-LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhh-cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            4678888888999999988888877766555550 1366777889999999999999999999999999987 8999999


Q ss_pred             chHHHHHHHHH-HH---hc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          81 GLPFIVSFLLI-AL---AN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        81 ~~~~~~~~~~~-~~---~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      .++.+++.++. ..   .+ ..+.++++|++.|+|.|.. +..-.|+++..-.++|.++.+....
T Consensus       109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~  172 (488)
T KOG2325|consen  109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSG  172 (488)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhh
Confidence            99999998887 33   23 5778999999999998764 5677899998888888877665443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.02  E-value=3.9e-09  Score=75.54  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPFIVSFLLIALANGVPMILAGRC  105 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
                      ...|.+.+   +.+.++.+.++..+...++........+++.|| ++.|+.+..+.....++.......++.+.+.+...
T Consensus       229 ~~~p~~~~---~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  305 (400)
T PRK11646        229 LMLPIMVN---DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLIC  305 (400)
T ss_pred             HhhhhhHH---hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            45677766   444466788888777777666666666666654 66666667777777777777777777777777777


Q ss_pred             HhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +.+.+.+...+...+.+.|..|+++|++..++.+..
T Consensus       306 l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~  341 (400)
T PRK11646        306 LFYIGSIIAEPARETLSASLADARARGSYMGFSRLG  341 (400)
T ss_pred             HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHH
Confidence            888888888888889999999999999999987654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.02  E-value=4.6e-09  Score=74.40  Aligned_cols=135  Identities=19%  Similarity=0.138  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhHhhhc-h
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTILSTG-L   82 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~~~~~-~   82 (144)
                      ..++.++++..........+.-+.|.|+.  |..|.|..+..+..+.+=.+.+.|.++.|+++||+  |||...-+.. +
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~--e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLS--EVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            34677888888888999999999999988  37889999999999999999999999999999995  6666654433 3


Q ss_pred             HHHHHHHHHHHh--chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          83 PFIVSFLLIALA--NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        83 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ...++....-.+  +|++...++.++.|+..-+.+-+......|..|++--|++.|+...+.
T Consensus       330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~  391 (448)
T COG2271         330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFA  391 (448)
T ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHH
Confidence            333333333333  356788888899999887777788889999999999999998876554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.01  E-value=2.5e-09  Score=75.72  Aligned_cols=105  Identities=19%  Similarity=0.224  Sum_probs=95.7

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA  117 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  117 (144)
                      ++|++..|...+....++..+++++++|++.||+|.|+++..+.++..+..+...+......+.++..+.|...|..++.
T Consensus       282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~  361 (438)
T COG2270         282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS  361 (438)
T ss_pred             HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence            79999999999999999999999999999999999999999998888887777777777777777889999999999999


Q ss_pred             HHHHHhhccCcchhhhhchhhhhhc
Q psy6141         118 LPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       118 ~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .-++..+..|+++-++..|+++.++
T Consensus       362 SRSy~~~lvp~~k~~~fFglyaltg  386 (438)
T COG2270         362 SRSYLARLVPKGKEGRFFGLYALTG  386 (438)
T ss_pred             HHHHHHHhCCCccccceeehhhhhh
Confidence            9999999999999999999988764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.01  E-value=4.9e-09  Score=74.88  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA  117 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  117 (144)
                      .+|.++.+.+.......++.+++.+..+++.||.++|+.+..+. ...+........++++...+..++.|++.+...+.
T Consensus       235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~  313 (393)
T PRK11195        235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVP  313 (393)
T ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence            67889999999999999999999999999999999988777664 33333444455666776777778889998888888


Q ss_pred             HHHHHhhccCcch-hhhhchhhhhhc
Q psy6141         118 LPVYLGETVQPEV-RGTLGLLPTFLG  142 (144)
Q Consensus       118 ~~~~~~~~~~~~~-r~~~~~~~~~~~  142 (144)
                      ..+..+|..|+|+ +|++.++.+...
T Consensus       314 ~~~~~q~~~~~~~~~g~~~a~~~~~~  339 (393)
T PRK11195        314 MNALLQHRGHVLVGAGHSIAVQNFNE  339 (393)
T ss_pred             HHHHHHhhCcccccchhHHHHHhHHH
Confidence            8888888766654 688877766543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.00  E-value=5.5e-09  Score=72.75  Aligned_cols=117  Identities=18%  Similarity=0.237  Sum_probs=104.5

Q ss_pred             hhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHH
Q psy6141          20 FASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPM   99 (144)
Q Consensus        20 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   99 (144)
                      -....+.|.++++.+   +.+.|.+..+..++...+.....+++..++..|+|.++.+..+.++..++..+-... +.+.
T Consensus        26 ~~itsvgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~  101 (395)
T COG2807          26 PAITSVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPL  101 (395)
T ss_pred             hhhhhhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHH
Confidence            355667788888888   999999999999999999999999999999999999999999999999998888776 7788


Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         100 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ++.+..+.|.+.+..+...+..+.|.||+| -+..+++++..
T Consensus       102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~s  142 (395)
T COG2807         102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTS  142 (395)
T ss_pred             HHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHH
Confidence            888999999999999999999999999875 57788777654

>KOG0253|consensus

Probab=99.00  E-value=5.8e-10  Score=78.01  Aligned_cols=130  Identities=20%  Similarity=0.162  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHH
Q psy6141           5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPF   84 (144)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~   84 (144)
                      +-.....+.+...........+...|...+   .++.+..+..++....+++..+++..+|..+|++|||+......+..
T Consensus        77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t  153 (528)
T KOG0253|consen   77 WYLFFVAGMGWMADAMEMMLLSLILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT  153 (528)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence            334444445555554444445555566655   88999899999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141          85 IVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLP  138 (144)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  138 (144)
                      .+..++...++|+..+.+.|.+.|++.|+ .|...++-.|..|..+|...+-+.
T Consensus       154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~  206 (528)
T KOG0253|consen  154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS  206 (528)
T ss_pred             HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH
Confidence            88889999999999999999999999998 788888889999999998765443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.99  E-value=5.5e-09  Score=74.85  Aligned_cols=114  Identities=13%  Similarity=0.089  Sum_probs=89.2

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc-chhhHhhhchHHHHHHHH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG-RRTTILSTGLPFIVSFLL   90 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-~r~~~~~~~~~~~~~~~~   90 (144)
                      ....+..........|+.|.+.+   +.+.|.+|+|.+.+...+..+++++++|.++||.+ +||.+.+..+..++....
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~   84 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL   84 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            34445555666777888999998   88999999999999999999999999999999986 466666666666666666


Q ss_pred             HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCc
Q psy6141          91 IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQP  128 (144)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~  128 (144)
                      ....++++.+.....+..+......|...++..+...+
T Consensus        85 ~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~  122 (400)
T PF03825_consen   85 LAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD  122 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence            66677888777777777777777777777777776653

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.98  E-value=5.1e-09  Score=75.67  Aligned_cols=130  Identities=16%  Similarity=0.092  Sum_probs=78.8

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhH-hhhchHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTI-LSTGLPFIVS   87 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~-~~~~~~~~~~   87 (144)
                      +....+...........+.|.+.++  +.+.+..+.+...+...++..++.++.|+++||+  ++|+.. ....+.....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~p~~l~~--~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~  325 (434)
T PRK11663        248 LSFSYVLVYVVRAAINDWGNLYMSE--TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS  325 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence            3333333333444455677888752  6799999999999999999999999999999998  333332 2211111111


Q ss_pred             HHHHH-H-hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          88 FLLIA-L-ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        88 ~~~~~-~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..... . ..+.....+..+..|++.............|.+|+++|+++.++.+...
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  382 (434)
T PRK11663        326 VGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFA  382 (434)
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHH
Confidence            11111 1 2233333333444454433223334557789999999999999887654

>PRK09848 glucuronide transporter; Provisional

Probab=98.97  E-value=1.3e-08  Score=73.84  Aligned_cols=116  Identities=15%  Similarity=0.095  Sum_probs=83.9

Q ss_pred             cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh--chHHHHH
Q psy6141          24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA--NGVPMIL  101 (144)
Q Consensus        24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~  101 (144)
                      ......|.+.++  .++.++...++......++.+++.++.+++.||+|+|+.+..+.++..++.+...+.  ++.+.+.
T Consensus       246 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~  323 (448)
T PRK09848        246 AVSASSLFYVRY--VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVAL  323 (448)
T ss_pred             HHhhhheeeEee--ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence            333445555552  566665555554555567788899999999999999999999888887777666554  3566666


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhccCcch-------hhhhchhhhhh
Q psy6141         102 AGRCVAGFCVGIASLALPVYLGETVQPEV-------RGTLGLLPTFL  141 (144)
Q Consensus       102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~  141 (144)
                      +...+.|++.+...+...+..+|..|+++       +|...++.+..
T Consensus       324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~  370 (448)
T PRK09848        324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT  370 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence            67788899999999988999999887643       36666665543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.97  E-value=5.7e-09  Score=75.47  Aligned_cols=117  Identities=11%  Similarity=0.046  Sum_probs=73.6

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH---HHHHHHH--hchH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV---SFLLIAL--ANGV   97 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~---~~~~~~~--~~~~   97 (144)
                      .....+.|.+.++  +.+.++.+.++......++..++.+..|++.||+++++....+......   +......  ..+.
T Consensus       268 ~~~~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T TIGR00712       268 YGVLDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNP  345 (438)
T ss_pred             HHHHHhHHHHHHH--ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            3455678888872  5688888999999999999999999999999999754432223222211   1111111  1233


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +......+..|.+.............|.+|+++|+++.|+.+..
T Consensus       346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  389 (438)
T TIGR00712       346 LVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  389 (438)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchH
Confidence            33333344445443222222234678999999999999988654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.96  E-value=8.1e-09  Score=69.29  Aligned_cols=116  Identities=17%  Similarity=0.133  Sum_probs=90.3

Q ss_pred             hhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh------
Q psy6141          21 ASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA------   94 (144)
Q Consensus        21 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------   94 (144)
                      ..+.+..+-|.+++   .+|+|.+|...+.....+|.-++ ++.|.+.|++|++.++.++.+...++......+      
T Consensus        17 t~Y~Fs~yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~   92 (250)
T PF06813_consen   17 TTYTFSAYSPQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP   92 (250)
T ss_pred             cccchhhhhHHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence            45556667788777   89999999999999999998875 888999999999999999999999988766542      


Q ss_pred             -chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          95 -NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        95 -~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                       .++|.+.+...+.|.+.+..+........+.||+ +||++.++....
T Consensus        93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~  139 (250)
T PF06813_consen   93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGF  139 (250)
T ss_pred             ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHH
Confidence             3455665566666666666666666677788875 799988875543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.96  E-value=7.7e-09  Score=73.63  Aligned_cols=112  Identities=16%  Similarity=0.009  Sum_probs=78.0

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHH-HHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH------hchHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMP-LSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL------ANGVPM   99 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~   99 (144)
                      .+.+.+.+   |.|.++++.+....... ...+++.++.|++.||+|+|+.+..+.....+.......      .++...
T Consensus       229 ~~~~~~l~---~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (390)
T TIGR02718       229 GLSKLYLV---DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV  305 (390)
T ss_pred             HHhhHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH
Confidence            34566666   67999999999888775 466778999999999999999988766555333222221      122333


Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHhhccCc-chhhhhchhhhhh
Q psy6141         100 ILAGRCVAGFCVGIASLALPVYLGETVQP-EVRGTLGLLPTFL  141 (144)
Q Consensus       100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~  141 (144)
                      ......+.+++.+...+.......+..++ +++++..++.+..
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (390)
T TIGR02718       306 AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQST  348 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            34444556677777777777777777766 7889988877654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.96  E-value=1.4e-08  Score=70.44  Aligned_cols=120  Identities=11%  Similarity=0.049  Sum_probs=89.5

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF   88 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   88 (144)
                      ....+..+.+.........+.+.+.++.+.++.++++.+...+.+..+..++.+..+++.||+|+||.+..+..+..++.
T Consensus       143 ~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~  222 (310)
T TIGR01272       143 VLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            33444444444445556667788876322468899999999999999999999999999999999998888877777766


Q ss_pred             HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141          89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE  129 (144)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~  129 (144)
                      ......++... .....+.|++.+..+|...+...+.+|++
T Consensus       223 ~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~  262 (310)
T TIGR01272       223 IGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH  262 (310)
T ss_pred             HHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            55544444332 23555789999999999888888888764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.95  E-value=1.3e-08  Score=70.91  Aligned_cols=97  Identities=19%  Similarity=0.258  Sum_probs=81.2

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR  104 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (144)
                      -.|+.....+   +++++..+++.+.........+..++.|.++||+|||+..+..+++...+++ .-..++++.++++|
T Consensus        53 QGpY~Y~LY~---~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GR  128 (354)
T PF05631_consen   53 QGPYLYALYE---SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGR  128 (354)
T ss_pred             hcchhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHH
Confidence            3444444445   7899999999999999999999999999999999999999999999998886 44558899999999


Q ss_pred             HHhhhhhhhhhhhHHHHH-hhc
Q psy6141         105 CVAGFCVGIASLALPVYL-GET  125 (144)
Q Consensus       105 ~~~g~~~g~~~~~~~~~~-~~~  125 (144)
                      ++.|++.......-.++. .|+
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh  150 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEH  150 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988877766644 444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.95  E-value=3.5e-09  Score=77.46  Aligned_cols=115  Identities=20%  Similarity=0.062  Sum_probs=75.4

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchh-------hHhhhchHHHHHHHHHHHhchH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRT-------TILSTGLPFIVSFLLIALANGV   97 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~-------~~~~~~~~~~~~~~~~~~~~~~   97 (144)
                      .....|.+..+  +.+.+..+.+...+...++..++.+++|+++||++||+       .......+..+........++.
T Consensus       271 ~~~~~p~~l~~--~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~  348 (476)
T PLN00028        271 MDNIIAEYFYD--RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSL  348 (476)
T ss_pred             HHhHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchH
Confidence            33456776552  67899999999999999999999999999999998762       2222222222223333344555


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +...+...+.+++.+...+....+..|.. +++|+...++.....
T Consensus       349 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g  392 (476)
T PLN00028        349 GAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGG  392 (476)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccc
Confidence            55555555666665555555555666664 568898888875543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.93  E-value=2.7e-09  Score=75.35  Aligned_cols=129  Identities=18%  Similarity=0.126  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141           7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV   86 (144)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~   86 (144)
                      ..+.+++.++...-....++..+|.+.++  +++.++.+.+...........+..+.+|+++||+|.+|+........++
T Consensus       219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~--~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~  296 (417)
T COG2223         219 DTWLLSLLYFATFGGFVGFSAYLPMYLVT--QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMAL  296 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHH
Confidence            44555666665555666677788988884  8999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHh-------chHHHHH----HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          87 SFLLIALA-------NGVPMIL----AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        87 ~~~~~~~~-------~~~~~~~----~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +.....+.       .+....+    ...++.|+++|..    ...+...+|+ +-|.+.|+....+
T Consensus       297 ~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv----fk~Ip~if~~-~~G~v~G~vga~G  358 (417)
T COG2223         297 AAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV----FKMIPVIFPK-ETGAVTGIVGAIG  358 (417)
T ss_pred             HHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh----eeechHHHHh-hhhHHHHHHHHhc
Confidence            77776654       2333333    3445555555554    4455555544 4566666655444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.92  E-value=1.8e-08  Score=71.16  Aligned_cols=111  Identities=12%  Similarity=0.040  Sum_probs=75.1

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH---H-hchHHHHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA---L-ANGVPMILA  102 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~  102 (144)
                      ...|.+..+  +.+.++++.+.......++..++.++.+++.||+|||+.+..+.....+......   . ..+.+...+
T Consensus       215 ~~~~~~~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (377)
T PRK11102        215 TAGPFVYIE--LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVV  292 (377)
T ss_pred             HcCHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344544441  5788999999999999999999999999999999999998877765444332222   1 223444444


Q ss_pred             HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141         103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus       103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ...+.+.+.+...+.......|..| ++|++..++...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  329 (377)
T PRK11102        293 GVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGT  329 (377)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHH
Confidence            4444444444445555566777766 788888877654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.91  E-value=5.8e-09  Score=75.24  Aligned_cols=139  Identities=17%  Similarity=0.111  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHhhhhhhhhcccccccccccC--CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhc
Q psy6141           5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQM--GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTG   81 (144)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~   81 (144)
                      -+....+....+..-++++.+-..+..|+..  .+.++++++++.-..+.+..-.=+...++|+++|| +|+|+++..+.
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa   99 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA   99 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            3444555566666666666655555555442  11356888888777777777777889999999999 59999999999


Q ss_pred             hHHHHHHHHHHHhc--hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhhcc
Q psy6141          82 LPFIVSFLLIALAN--GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFLGN  143 (144)
Q Consensus        82 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~  143 (144)
                      ++..++.+..+.++  +...+.++..+.++|.|..=+.....+.|.+|+++  |-...++.+...|
T Consensus       100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iN  165 (498)
T COG3104         100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN  165 (498)
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEee
Confidence            99999999999874  78889999999999999999999999999999754  4446666655444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.91  E-value=2.1e-08  Score=71.71  Aligned_cols=105  Identities=5%  Similarity=0.054  Sum_probs=76.4

Q ss_pred             ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy6141          29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAG  108 (144)
Q Consensus        29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (144)
                      .|.+.+   +.|.++++.+.......++..++.++.+++.||.+++.......+............++.+.+.+..++.|
T Consensus       240 ~p~~~~---~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G  316 (394)
T PRK10213        240 RPVYMN---LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            366666   77899999999999999999999999999999965443333333333333444445566777777888899


Q ss_pred             hhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141         109 FCVGIASLALPVYLGETVQPEVRGTLGLL  137 (144)
Q Consensus       109 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  137 (144)
                      ++.+...+..++.+++..|++ +++..+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  344 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLADQ-AEKAGSI  344 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCccc-HHHHHHH
Confidence            999888888888889888744 4444443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.7e-08  Score=71.53  Aligned_cols=116  Identities=19%  Similarity=0.254  Sum_probs=86.2

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-chHHHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-NGVPMIL  101 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~  101 (144)
                      ..+...-|...+   ..|.+.+..+++...+.++..+++..+|++.|| +.|+.+.....+.++......+. ++.+...
T Consensus       229 ~~ftYi~P~L~~---v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~  304 (394)
T COG2814         229 ALYTYIRPFLES---VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL  304 (394)
T ss_pred             hhHHhHHHHHHH---ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            333334455555   788999999999999999999999999999999 88888888877777776666554 5555666


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141         102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus       102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      +..++.|+..+..........++ ..++.+..+.+++....|
T Consensus       305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~n  345 (394)
T COG2814         305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFN  345 (394)
T ss_pred             HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHH
Confidence            66666777766655555556666 336678888888776554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.90  E-value=2.2e-09  Score=78.41  Aligned_cols=129  Identities=13%  Similarity=0.043  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh----hhcchhhH-hhhch
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIE----SLGRRTTI-LSTGL   82 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~g~r~~~-~~~~~   82 (144)
                      -+.-+++.+..+.......++++.+..+  ..++++.+.+.+..+..+...+..|+.|.++|    |+||||.. +.+.+
T Consensus         8 ~~~yg~g~~~~~~~~~~~~~~l~~yyt~--v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i   85 (473)
T PRK10429          8 KLSYGFGAFGKDFAIGIVYMYLMYYYTD--VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL   85 (473)
T ss_pred             HHhhccchhHHhHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH
Confidence            3344555566666666667777777763  67999999999999999999999999999999    56986554 45666


Q ss_pred             HHHHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhcc-Ccchhhhhchhh
Q psy6141          83 PFIVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETV-QPEVRGTLGLLP  138 (144)
Q Consensus        83 ~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~  138 (144)
                      ..+++...+...++      ..++.+...+.+.+......+..+...|.. ++++|.+..+..
T Consensus        86 ~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~  148 (473)
T PRK10429         86 ANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYP  148 (473)
T ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHH
Confidence            66666554433221      234444555667777777888888999998 588999877763

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.89  E-value=6.6e-09  Score=74.92  Aligned_cols=115  Identities=16%  Similarity=0.136  Sum_probs=90.5

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI   91 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   91 (144)
                      ....+.............+.+.++  .++.+ +..+.......++.+++.+++++++||+|+|+.+..+....+++.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~--vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTY--VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL  307 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHH--HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence            333344444444444455555552  34444 566777888999999999999999999999999999999999988887


Q ss_pred             HHhc--hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141          92 ALAN--GVPMILAGRCVAGFCVGIASLALPVYLGETVQPE  129 (144)
Q Consensus        92 ~~~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~  129 (144)
                      .+.+  +.+.+++...+.|++.+......++..+|..+.+
T Consensus       308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~  347 (428)
T PF13347_consen  308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD  347 (428)
T ss_pred             HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence            7764  8899999999999999999999999999998854

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.89  E-value=8.4e-09  Score=56.94  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=59.0

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      ....+..........|++|.+.+   +.|+|+.+.+.+.++..+...++.+++|.++||.++++..+.....
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~---~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLK---QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            34455566667788899999998   8999999999999999999999999999999999999887765443

>PRK09669 putative symporter YagG; Provisional

Probab=98.88  E-value=2.9e-09  Score=77.14  Aligned_cols=129  Identities=12%  Similarity=0.046  Sum_probs=89.1

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhHh-hhchHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTIL-STGLPF   84 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~~-~~~~~~   84 (144)
                      .-.++.+..+........+++.+..+  ++|+++.+.+.+..+..+...+..|+.|+++||    +||||..+ .+.+..
T Consensus        13 ~yg~g~~~~~~~~~~~~~~l~~~~t~--~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~   90 (444)
T PRK09669         13 GYGLGDTACNLVWQTVMLFLAYFYTD--VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPF   90 (444)
T ss_pred             hhcchhhhhhHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHH
Confidence            33444444444444445556666653  899999999999999999999999999999999    77766554 566666


Q ss_pred             HHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhcc-Ccchhhhhchhhhh
Q psy6141          85 IVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETV-QPEVRGTLGLLPTF  140 (144)
Q Consensus        85 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~  140 (144)
                      ++........++      ..++.+...+.+.+......+..+..+|+. ++++|.+..+....
T Consensus        91 ~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~  153 (444)
T PRK09669         91 GVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFA  153 (444)
T ss_pred             HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHH
Confidence            666554444332      344555555666666666777778899987 56788876655443

>PRK10054 putative transporter; Provisional

Probab=98.88  E-value=1.3e-08  Score=72.80  Aligned_cols=102  Identities=9%  Similarity=0.029  Sum_probs=81.7

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-chHHHHHHHHHHhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-NGVPMILAGRCVAGFCVGIASL  116 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~  116 (144)
                      +.+.+....+.+...........+++.|++.||.++|+.+..+.....++....... ++.+.+.+...+.|++.+...+
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p  317 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP  317 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence            445566677777777777777888899999999999999888887777777666654 5677677788899999888788


Q ss_pred             hHHHHHhhccCcchhhhhchhhh
Q psy6141         117 ALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus       117 ~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      .....+.|..|++.|++..+..+
T Consensus       318 ~~~~~~~~~~p~~~~~~~~~~~~  340 (395)
T PRK10054        318 GEYMLIDHIAPPGMKASYFSAQS  340 (395)
T ss_pred             hHHHHHHHhCCcccceehHhHHH
Confidence            88889999999999998876443

>KOG0569|consensus

Probab=98.88  E-value=3.6e-08  Score=71.78  Aligned_cols=114  Identities=19%  Similarity=0.129  Sum_probs=84.2

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh----chH--H
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA----NGV--P   98 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~~--~   98 (144)
                      ...+...+.+   +.|.+.++..++.....+...+..+.+..+.||.|||+.++.+.....+..+.+...    +..  |
T Consensus       289 i~~Yst~i~~---~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~  365 (485)
T KOG0569|consen  289 IFFYSTSIFK---TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSW  365 (485)
T ss_pred             eHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3334444555   789999999999999999999999999999999999999999998888877766542    111  1


Q ss_pred             ---HHHHHHHHhhhhhh-hhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          99 ---MILAGRCVAGFCVG-IASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        99 ---~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                         ..+++.++..+..+ +..|+.+-+.+|++|++.|+.+.++....
T Consensus       366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~  412 (485)
T KOG0569|consen  366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAV  412 (485)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHH
Confidence               12233333333322 22577888999999999999988876543

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.87  E-value=3.9e-08  Score=72.28  Aligned_cols=104  Identities=19%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             CCCCCcchhHHHH-HHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH---HHh-chHHHHHHHHHHhhhhhh
Q psy6141          38 RVSPTEEEASWIG-SLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI---ALA-NGVPMILAGRCVAGFCVG  112 (144)
Q Consensus        38 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~g~~~g  112 (144)
                      +.|.++++.+... ....++.+++.++.|++.||+|+|+.+..+.+...+.....   ... ++.+.+....++..++.|
T Consensus       252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g  331 (491)
T PRK11010        252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGG  331 (491)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            6899999999987 46668999999999999999999888776555444433222   222 344444445556555555


Q ss_pred             hhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         113 IASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ...+...++..+..|++.+++..++.+..
T Consensus       332 ~~~~~~~a~~~~l~~~~~~~t~~gl~~s~  360 (491)
T PRK11010        332 MGTAAFVALLMTLCNKSFSATQFALLSAL  360 (491)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            55566677888888888888777766553

>PRK10133 L-fucose transporter; Provisional

Probab=98.87  E-value=3.4e-08  Score=71.58  Aligned_cols=99  Identities=13%  Similarity=0.000  Sum_probs=79.3

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA  117 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  117 (144)
                      ..|.++.+.+.......++..++.+..+++.||+|+|+.+..+.++..+......+.++.+ ......+.|++.+...|.
T Consensus       289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~  367 (438)
T PRK10133        289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPT  367 (438)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999999998888777766665555555432 244567789999999999


Q ss_pred             HHHHHhhccCcchhhhhchhh
Q psy6141         118 LPVYLGETVQPEVRGTLGLLP  138 (144)
Q Consensus       118 ~~~~~~~~~~~~~r~~~~~~~  138 (144)
                      ......|.+|++ .+.+.++.
T Consensus       368 ~~s~a~~~~~~~-~~~as~l~  387 (438)
T PRK10133        368 IFSLGIKNLGQD-TKYGSSFI  387 (438)
T ss_pred             HHHHHHcccchh-hccchhHH
Confidence            999999988764 44444443

>PRK11043 putative transporter; Provisional

Probab=98.84  E-value=5.5e-08  Score=69.46  Aligned_cols=111  Identities=15%  Similarity=0.150  Sum_probs=80.4

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH---HH--hchHHHHH
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI---AL--ANGVPMIL  101 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~--~~~~~~~~  101 (144)
                      ...|.+.+   +.+.++.+.++......++..++....+++.||+|+|+..........++....   ..  .++.+...
T Consensus       224 ~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (401)
T PRK11043        224 TGSPFILE---QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLL  300 (401)
T ss_pred             HHhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence            34676766   678898899988888888899999999999999999987655544444433222   11  23455555


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +...+.|++.+...+.......|..| ++|+++.++.+..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~  339 (401)
T PRK11043        301 IPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTL  339 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHH
Confidence            56677788888888887777777776 5789988887654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.83  E-value=1.3e-08  Score=56.78  Aligned_cols=80  Identities=20%  Similarity=0.237  Sum_probs=71.5

Q ss_pred             hhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchH
Q psy6141          18 VGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGV   97 (144)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   97 (144)
                      .+.....+.|.+|.+.+   |.+.|.++.+++.+...+|+++|.+...++.++..+++.+..+.+...+....+++.++.
T Consensus         4 mGigRFayTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~   80 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF   80 (85)
T ss_pred             hhhHHHHHHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            35566778899999999   999999999999999999999999999999999888899999999999999999988876


Q ss_pred             HHH
Q psy6141          98 PMI  100 (144)
Q Consensus        98 ~~~  100 (144)
                      +.+
T Consensus        81 ~~w   83 (85)
T PF06779_consen   81 WLW   83 (85)
T ss_pred             HHH
Confidence            654

Note that many members are hypothetical proteins.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.83  E-value=8.6e-08  Score=70.11  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-----hchHHHHHHHHHHhhhhhhhhhh
Q psy6141          42 TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-----ANGVPMILAGRCVAGFCVGIASL  116 (144)
Q Consensus        42 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~  116 (144)
                      +++..+.+.....++.+++.++++++.||+|+|+.+..+..+.+++.+....     .++.+.+.+..++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777777888999999999999999999998877766655544432     34456666677888899888888


Q ss_pred             hHHHHHhhccCc
Q psy6141         117 ALPVYLGETVQP  128 (144)
Q Consensus       117 ~~~~~~~~~~~~  128 (144)
                      ...++++|..|.
T Consensus       344 ~~~am~ad~id~  355 (473)
T PRK10429        344 LQVIMVADTVDY  355 (473)
T ss_pred             HHHHHHhhhhhh
Confidence            889999999763

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.79  E-value=4.6e-08  Score=71.13  Aligned_cols=115  Identities=11%  Similarity=0.021  Sum_probs=66.6

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL   89 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   89 (144)
                      .+++..+...-....+...+|.+.++  ++  +............+...+..+++|+++||+|+||++..+.+...+...
T Consensus       256 llslly~~tFG~fvg~s~~lp~~~~~--~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~  331 (462)
T PRK15034        256 LLSLLYLATFGSFIGFSAGFAMLAKT--QF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSA  331 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--Hc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            33333333333334344456666652  22  333333334455677888999999999999999999988876666654


Q ss_pred             HHHH-h-----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCc
Q psy6141          90 LIAL-A-----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQP  128 (144)
Q Consensus        90 ~~~~-~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~  128 (144)
                      .... .     .+.+.+.+..+...++.|..+.....++.+.+|+
T Consensus       332 ~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~  376 (462)
T PRK15034        332 LLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQ  376 (462)
T ss_pred             HHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence            3222 1     2455555544444444444455555566666663

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.76  E-value=9.7e-08  Score=68.50  Aligned_cols=127  Identities=20%  Similarity=0.235  Sum_probs=100.1

Q ss_pred             HHHHhhhhhhhhcccccccccccCCCCCC-CCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH
Q psy6141          12 SLGSMIVGFASAYTSPAIPSMNQMGSRVS-PTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL   90 (144)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   90 (144)
                      .+..+..+........+.+.+.+   +.+ .+.+..+...+...+.-++.-...+++..|+|.|+.+.++.+..++=...
T Consensus       213 ll~~~l~~~~~~~~~~f~~~yl~---~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l  289 (400)
T PF03825_consen  213 LLAAFLIGISHAAYYTFFSIYLQ---ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL  289 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            33444555556666667777777   666 66677788888888899999999999999999999999999888887777


Q ss_pred             HHHh-chHHHHHHH----HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          91 IALA-NGVPMILAG----RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        91 ~~~~-~~~~~~~~~----~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .+.. ++.+...+.    ..+.|+..+........++.|..|++.|+++.++++..
T Consensus       290 ~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~  345 (400)
T PF03825_consen  290 YAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSAL  345 (400)
T ss_pred             HHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            7766 454443332    35689999999999999999999999999999987654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.76  E-value=6e-08  Score=69.08  Aligned_cols=129  Identities=11%  Similarity=0.055  Sum_probs=90.9

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHH--HHHHHHHHHHHHhhHH-HHhhhcchhhHhhhchHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIG--SLMPLSALFGGMAGGP-LIESLGRRTTILSTGLPF   84 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~g~-l~d~~g~r~~~~~~~~~~   84 (144)
                      ...+...++..+.......+.+|.+.+   +.|.++++.+...  .......++.+|+++. ..||.||||..++.....
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~   79 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL   79 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence            445666778889988999999999999   8899999999973  5567778888888844 799999999975554332


Q ss_pred             HH-HHHHHH-H--hch-HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141          85 IV-SFLLIA-L--ANG-VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus        85 ~~-~~~~~~-~--~~~-~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      .. ...... .  ..+ ..++.....+.++.....++....+..|..++++++...+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~  139 (390)
T TIGR02718        80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQI  139 (390)
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHH
Confidence            22 222222 1  222 3333444455666777778888888899998888877655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.76  E-value=1e-07  Score=64.40  Aligned_cols=118  Identities=26%  Similarity=0.296  Sum_probs=89.5

Q ss_pred             hhhhcccccccccccCCCCCCCCc--chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhch-
Q psy6141          20 FASAYTSPAIPSMNQMGSRVSPTE--EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG-   96 (144)
Q Consensus        20 ~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~-   96 (144)
                      ..........+.+..   +.+.+.  ...++..+...++..++.++.|.+.||.|||+.+..+......+.....+..+ 
T Consensus        16 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~   92 (338)
T COG0477          16 LDLGLLSPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV   92 (338)
T ss_pred             HhcchHHHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence            444444445566555   444444  46788999999999999999999999999998877777655555555555555 


Q ss_pred             -HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCc-chhhhhchhhhh
Q psy6141          97 -VPMILAGRCVAGFCVGIASLALPVYLGETVQP-EVRGTLGLLPTF  140 (144)
Q Consensus        97 -~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~  140 (144)
                       .+.+.+.|...|++.+...+....+..|..|+ ++|+...+....
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTL  138 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence             88888999999999998899999999999998 667776665443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.72  E-value=1.5e-07  Score=68.92  Aligned_cols=122  Identities=11%  Similarity=0.054  Sum_probs=83.3

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc-----chhhHhhhchH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG-----RRTTILSTGLP   83 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----~r~~~~~~~~~   83 (144)
                      ..+...++..+.. ......++.+.++  ++|.++++.+...+...+...+ .+++|.++||++     ||+.++++.++
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~--~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTD--DLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHH--hcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHH
Confidence            4445566777777 4444444444441  7899999999999999998888 555999999997     56656666555


Q ss_pred             HH-HHHHHHHHhchHH-HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhc
Q psy6141          84 FI-VSFLLIALANGVP-MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLG  135 (144)
Q Consensus        84 ~~-~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~  135 (144)
                      .. +........++.. ...+..++.+++.+..+.....+..|..+ |++....
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~  157 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGP  157 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCC
Confidence            42 3322223334433 33447788999999999999999999998 5554433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.71  E-value=2.1e-07  Score=66.22  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-hchHHHHHHHHHHhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-ANGVPMILAGRCVAGFCVGIASL  116 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~  116 (144)
                      ..|.++++.++..+...++..++.++.+++.||+|+|+.+..+..+..++.+.... .++.+...+..++.+.+.....+
T Consensus       229 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  308 (382)
T PRK10091        229 ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSA  308 (382)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhH
Confidence            57889999999999999999999999999999999999988887777776655443 44455555555556665544444


Q ss_pred             hHH-HHHhhccCcchhhhh
Q psy6141         117 ALP-VYLGETVQPEVRGTL  134 (144)
Q Consensus       117 ~~~-~~~~~~~~~~~r~~~  134 (144)
                      ... ....+..|++.++..
T Consensus       309 ~~~~~~~~~~~~~~~~~~~  327 (382)
T PRK10091        309 PLQILLLQNAKGGELLGAA  327 (382)
T ss_pred             HHHHHHHHhCCcchHHHHH
Confidence            333 344455556666654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.70  E-value=2.5e-07  Score=66.21  Aligned_cols=100  Identities=17%  Similarity=0.178  Sum_probs=71.3

Q ss_pred             CCCCCcchhHHHHHHHH-HHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH---HHh-chHHHHHHHH----HHhh
Q psy6141          38 RVSPTEEEASWIGSLMP-LSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI---ALA-NGVPMILAGR----CVAG  108 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~~~g  108 (144)
                      +.|.++++.+++..... .+..++.++.+++.||+|+|+.+..+.....+..+..   ... ++.+.+.+..    +..|
T Consensus       239 ~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g  318 (402)
T PRK11902        239 GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGG  318 (402)
T ss_pred             hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            68899999998876544 5689999999999999999998876666555543332   233 3445444443    3456


Q ss_pred             hhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141         109 FCVGIASLALPVYLGETVQPEVRGTLGLL  137 (144)
Q Consensus       109 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  137 (144)
                      ++.+...+....++.+.+|.++++...+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (402)
T PRK11902        319 MGTAAFVALLMALCNRSFSATQYALLSAL  347 (402)
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            66677778888899999998887754443

>KOG0253|consensus

Probab=98.69  E-value=1.6e-08  Score=70.95  Aligned_cols=91  Identities=20%  Similarity=0.145  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchh
Q psy6141          52 LMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVR  131 (144)
Q Consensus        52 ~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r  131 (144)
                      ...+.-..|.++.+++.||+|||+++..+.+++.+..++...+.+.....+..+..-++..+.+...+.|..|++|++.|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            34566678889999999999999999999999999988888765443333333334444445556678899999999999


Q ss_pred             hhhchhhhhhc
Q psy6141         132 GTLGLLPTFLG  142 (144)
Q Consensus       132 ~~~~~~~~~~~  142 (144)
                      +++.|..+...
T Consensus       469 atgvGtcSsma  479 (528)
T KOG0253|consen  469 ATGVGTCSSMA  479 (528)
T ss_pred             hcchhhhhhHH
Confidence            99988876654

>KOG2563|consensus

Probab=98.66  E-value=1.4e-07  Score=67.58  Aligned_cols=136  Identities=14%  Similarity=0.111  Sum_probs=104.7

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141           2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG   81 (144)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~   81 (144)
                      +|||......++..+..++....+.+..-....   .++ +.+..-|...++.+.+..-.+.+-|+.||+|-|...+++.
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            477888777777777777666655554433333   445 6667788899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhc------hHH--HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          82 LPFIVSFLLIALAN------GVP--MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        82 ~~~~~~~~~~~~~~------~~~--~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .+..++..+-..+.      .++  ....+..+.+...-....+......-|||++||..+..+....
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~  184 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMG  184 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhc
Confidence            99999998877642      333  4556777777777777777677778899999999988765543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.65  E-value=3.9e-07  Score=64.94  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=68.5

Q ss_pred             ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy6141          29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAG  108 (144)
Q Consensus        29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (144)
                      .|.+.++  +++.++.+.+.......++.+++.++.+++.||+|||+.+..+.....++.......++.+.......+.+
T Consensus       226 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  303 (392)
T PRK10473        226 SPVLLME--QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLIC  303 (392)
T ss_pred             CHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4544431  67888888999899999999999999999999999999999888887777776666555444333333434


Q ss_pred             hhhhhhhhhHHHHHhhccCcchhh
Q psy6141         109 FCVGIASLALPVYLGETVQPEVRG  132 (144)
Q Consensus       109 ~~~g~~~~~~~~~~~~~~~~~~r~  132 (144)
                      .+.+...+.  ....+..|.++|+
T Consensus       304 ~g~~~~~~~--~~~~~~~~~~~~~  325 (392)
T PRK10473        304 AGFSVGFGV--AMSQALGPFSLRA  325 (392)
T ss_pred             HHHHHHhHH--HHHHHhccCcccc
Confidence            443333222  2335555655553

>PRK09848 glucuronide transporter; Provisional

Probab=98.65  E-value=6.9e-08  Score=70.04  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=84.1

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh----cchhhH-hhhchH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL----GRRTTI-LSTGLP   83 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----g~r~~~-~~~~~~   83 (144)
                      +.-+++.+..+.......++++.+.++  ..++++.+.+.+.+...+...+..++.|+++||.    ||||.. +.+.+.
T Consensus        11 ~~yg~g~~~~~~~~~~~~~~l~~y~~~--~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~   88 (448)
T PRK09848         11 VGYSLGDVANNFAFAMGALFLLSYYTD--VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP   88 (448)
T ss_pred             HhhccchHHhHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence            334444444455455555555556662  6799999999999999999999999999999996    777765 445444


Q ss_pred             HHHHHHHHH-Hh----c--hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhh
Q psy6141          84 FIVSFLLIA-LA----N--GVPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPT  139 (144)
Q Consensus        84 ~~~~~~~~~-~~----~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~  139 (144)
                      ..+...... ..    +  ......+...+.+.+.+...+...+...|..+ +++|.+..+...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~  152 (448)
T PRK09848         89 LMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARG  152 (448)
T ss_pred             HHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHH
Confidence            444333322 11    1  12233444566777777777777777777654 567887765543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.65  E-value=4.8e-07  Score=66.74  Aligned_cols=94  Identities=13%  Similarity=0.015  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHHHhh----HHHHhhhcchhhHhhhchHHHHHHHHHHHhch---------HHHHHHHHHHhhhhhh
Q psy6141          46 ASWIGSLMPLSALFGGMAG----GPLIESLGRRTTILSTGLPFIVSFLLIALANG---------VPMILAGRCVAGFCVG  112 (144)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~----g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~g  112 (144)
                      .+++++...+..++..++.    +++.||.++++.+.++.++.+++........+         .++++...++.|++.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5666777776667776666    55555555557778888888888877766543         5678889999999999


Q ss_pred             hhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141         113 IASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      ...|....++.+..|++.|++.+|.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~  424 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWF  424 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            999999999999999999999999875

>PRK09669 putative symporter YagG; Provisional

Probab=98.64  E-value=5.6e-07  Score=65.30  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH-H-hchHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy6141          45 EASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA-L-ANGVPMILAGRCVAGFCVGIASLALPVYL  122 (144)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~  122 (144)
                      ..+.......+..+++.++++++.||+|+|+.+..+.+...+...... . .++.+.+.+..++.|++.+...+..++.+
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566778889999999999999999998877765554333222 2 35666677778889999999999999999


Q ss_pred             hhccCc
Q psy6141         123 GETVQP  128 (144)
Q Consensus       123 ~~~~~~  128 (144)
                      +|..|.
T Consensus       345 ad~~d~  350 (444)
T PRK09669        345 SDVVDY  350 (444)
T ss_pred             Hhhhhh
Confidence            999873

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.64  E-value=2.2e-07  Score=67.66  Aligned_cols=132  Identities=10%  Similarity=0.011  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhH--------hh
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTI--------LS   79 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~--------~~   79 (144)
                      .+...+..+...........++|.+.++  +++.+..+.++..+...++..++.++.|+++||+++|+..        ..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISW--VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            4455555555555566666788988762  6789999999999999999999999999999998755321        11


Q ss_pred             hchHH--HHHHHHHHH-hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          80 TGLPF--IVSFLLIAL-ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        80 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +....  .+..+.... ..+....++...+.+.+.+...+.......|..|+ .+|...++.+...
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~  405 (465)
T TIGR00894       341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPG  405 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHH
Confidence            11111  111111112 23344444444455555554444444455666655 7888888877654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.64  E-value=6e-07  Score=65.12  Aligned_cols=105  Identities=19%  Similarity=0.165  Sum_probs=84.1

Q ss_pred             hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc--hHHH
Q psy6141          22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN--GVPM   99 (144)
Q Consensus        22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~   99 (144)
                      ..........+.++  .++.++.+..........+.+++.+++.++.+|+|+|+.+..+.++.+++.....+.+  +.+.
T Consensus       252 ~~i~~s~~~yy~~y--~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l  329 (467)
T COG2211         252 FNIRGSIMVYYVTY--VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVL  329 (467)
T ss_pred             HHHHhhhhheeEEE--EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHH
Confidence            33334444444442  5565666666777778888888899999999999999999999999999988887754  6778


Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHhhccCc
Q psy6141         100 ILAGRCVAGFCVGIASLALPVYLGETVQP  128 (144)
Q Consensus       100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~  128 (144)
                      .++..++.+++.+...+..++.++|..+.
T Consensus       330 ~~~~~~i~~~g~~~~~~l~wam~~d~vDy  358 (467)
T COG2211         330 IVVALIIAGVGTGIANPLPWAMVADTVDY  358 (467)
T ss_pred             HHHHHHHHHHHhhccccccHHHhcchhhH
Confidence            88888999999999999999999998774

>KOG2504|consensus

Probab=98.62  E-value=3.3e-07  Score=67.66  Aligned_cols=128  Identities=21%  Similarity=0.225  Sum_probs=104.3

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc--hhhHhhhchHHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR--RTTILSTGLPFIVSF   88 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~--r~~~~~~~~~~~~~~   88 (144)
                      ..+..............++|.+.+   +.+.+..+.....+...+...++.+..|+++|+...  +....++.+...+..
T Consensus       303 ~~~~~~~~~~g~~~p~~~l~~~~~---~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  303 LALSNLFAYLGFNVPFVYLPSYAK---SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR  379 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence            334444444445556667888888   889999999999999999999999999999999884  444456666666777


Q ss_pred             HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ..+.+.++++.+...-.+.|++.|...+.....+.|..+.++-..+.|+...+
T Consensus       380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~  432 (509)
T KOG2504|consen  380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLF  432 (509)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHH
Confidence            77788999999999999999999999988888999999999888888776554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.61  E-value=4.6e-07  Score=66.46  Aligned_cols=96  Identities=17%  Similarity=0.074  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHhhhcc-----hhhH--hhhchHHHHHHHHHHH---------hchHHHHHHHHHHhhh
Q psy6141          46 ASWIGSLMPLSALFGGMAGGPLIESLGR-----RTTI--LSTGLPFIVSFLLIAL---------ANGVPMILAGRCVAGF  109 (144)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~-----r~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~  109 (144)
                      .++..+...+..++.+++..++-.|.+|     +...  .++.++.+++.....+         ..|+++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            5678888888888888886654444433     3333  5677777777666654         3588999999999999


Q ss_pred             hhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         110 CVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       110 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +.....|....+..|..|++.|+++++++...
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~  425 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLA  425 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988754

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.60  E-value=4.8e-07  Score=63.33  Aligned_cols=130  Identities=18%  Similarity=0.089  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhchHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGLPFIVS   87 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~~~~~~~   87 (144)
                      +-+.+..-..+...+....++|.+..   |.|.|..+.+...+...+..+...+....+.+|. ++|+..........++
T Consensus       211 W~vtLfmGlqS~~~Y~~~~WLP~ili---~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         211 WQVTLFMGLQSLLYYIVIGWLPAILI---DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHH---HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            44444444555566677778999998   8999999999999999999999999999999974 5677777777777777


Q ss_pred             HHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc-hhhhhchhhhhhc
Q psy6141          88 FLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE-VRGTLGLLPTFLG  142 (144)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~  142 (144)
                      ...+.+.+....+.- .++.|++.|..++.....+.+..++. +-++..++.|..+
T Consensus       288 ~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~G  342 (395)
T COG2807         288 LVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVG  342 (395)
T ss_pred             HHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhh
Confidence            777766544332222 48899999999999999888887754 4456777766554

>PRK11462 putative transporter; Provisional

Probab=98.59  E-value=1.7e-07  Score=68.48  Aligned_cols=131  Identities=10%  Similarity=-0.009  Sum_probs=95.2

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhHh-hhchHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTIL-STGLPF   84 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~~-~~~~~~   84 (144)
                      .-+++.+..+........+++.+..+  ..++++...+.+..+.-+-..+.-|+.|.++||    +||||..+ .+.+..
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~--~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~   90 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTD--IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPF   90 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHH
Confidence            33444444455555555566666653  789999999999999999999999999999997    68877765 455677


Q ss_pred             HHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhhc
Q psy6141          85 IVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFLG  142 (144)
Q Consensus        85 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~  142 (144)
                      +++...+...++      ...+.+...+...+......+..++..|..+ ++||.+..++...+.
T Consensus        91 ~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~  155 (460)
T PRK11462         91 GIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLA  155 (460)
T ss_pred             HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            766655544332      3345555566778888888888889999887 788998888766543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.57  E-value=6.6e-07  Score=64.11  Aligned_cols=101  Identities=13%  Similarity=0.112  Sum_probs=86.6

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA  117 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  117 (144)
                      +.+.++...|...+..-+.-.+...+.+++.+|+|.|+.++++.....+=...++++++++.+.+...+.|+-.+.....
T Consensus       253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva  332 (412)
T PF01306_consen  253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA  332 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            34455667899999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             HHHHHhhccCcchhhhhchhh
Q psy6141         118 LPVYLGETVQPEVRGTLGLLP  138 (144)
Q Consensus       118 ~~~~~~~~~~~~~r~~~~~~~  138 (144)
                      ...|+++.+|+|..++...+.
T Consensus       333 ~fkYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  333 AFKYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHH
T ss_pred             HHHHHHHhCCHhHHHHHHHHH
Confidence            999999999999887755543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686|consensus

Probab=98.57  E-value=5e-09  Score=71.26  Aligned_cols=135  Identities=15%  Similarity=0.058  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhch
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGL   82 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~   82 (144)
                      +......+|+..+-..+.+..-....-.+..   +.+++.++..++.+.++.-..+-.+++|++.|| +|-|...++-+.
T Consensus        42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~  118 (459)
T KOG4686|consen   42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI  118 (459)
T ss_pred             HHHHHHHHHHhcccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence            3444455555555554444443333333333   677888888899999999999999999999998 577777777777


Q ss_pred             HHHHHHHHHHH---hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          83 PFIVSFLLIAL---ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        83 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ...++.++.+.   .+.+|.+..+|++.|+|.-....+.+.+..-+|..|+...+.|+....
T Consensus       119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSv  180 (459)
T KOG4686|consen  119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSV  180 (459)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHH
Confidence            77777777764   688999999999999998887788899999999999998888876543

>KOG4686|consensus

Probab=98.57  E-value=5.4e-07  Score=61.60  Aligned_cols=132  Identities=12%  Similarity=0.014  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc-hH
Q psy6141           5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG-LP   83 (144)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~-~~   83 (144)
                      .+.+..+++......+......   |.+.+  +.+|.|+.+.+-+.+.......+..++.|.++||.|++...+.+. +.
T Consensus       266 fw~~~iicv~yyva~fPFi~lg---~~fF~--~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~  340 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFITLG---PMFFQ--KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL  340 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh---HHHHH--HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence            3444555555555554444443   44444  279999999999999999999999999999999999987765543 33


Q ss_pred             HHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141          84 FIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      ...+.....++  .+.-.....+.|..........+..++.+.|+++.|++.+..+..-|
T Consensus       341 tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqN  398 (459)
T KOG4686|consen  341 TLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQN  398 (459)
T ss_pred             HHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHh
Confidence            33344444432  22233456778888877777778888999999999999998877654

>KOG0254|consensus

Probab=98.57  E-value=1.3e-06  Score=64.68  Aligned_cols=128  Identities=11%  Similarity=0.023  Sum_probs=84.5

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL   89 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   89 (144)
                      .+.+..+...........+.+.+.+   ..+.+.+. ........+...++..+...+.||+|||+.++.+.....++.+
T Consensus       299 ~~~l~~fqq~tG~~~~~~Y~~~if~---~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  299 GLLLQLFQQLTGINYVFYYSTTIFK---SAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHhCCceEEeehHHHHH---hcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            3344444444445556666777766   56665443 5556667777778888889999999999999999999999888


Q ss_pred             HHHHhc----h---------HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          90 LIALAN----G---------VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        90 ~~~~~~----~---------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ..+...    +         ...+....+.......+..+..+.+.+|.+|.+.|+++.++....
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~  439 (513)
T KOG0254|consen  375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAV  439 (513)
T ss_pred             HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHH
Confidence            776421    0         111222222222333334566677899999999999988776543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.54  E-value=1.5e-06  Score=62.67  Aligned_cols=117  Identities=9%  Similarity=-0.092  Sum_probs=81.5

Q ss_pred             HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141          14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL   93 (144)
Q Consensus        14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   93 (144)
                      ..+...........+++.+.++ ...+.+....+...+....+..++.+.++++.||+++||.+.+......+..+....
T Consensus       240 ~~f~yvg~e~~~~s~l~~y~~~-~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~  318 (410)
T TIGR00885       240 AQFFYVGVQIMCWTFIIQYAVR-LIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF  318 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344667777651 012333333444566666788899999999999999999988888888887777777


Q ss_pred             hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhh
Q psy6141          94 ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRG  132 (144)
Q Consensus        94 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~  132 (144)
                      .++... .....+.|++.+..+|.......+..+++.+.
T Consensus       319 ~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~  356 (410)
T TIGR00885       319 AGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY  356 (410)
T ss_pred             cCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            666444 45567778888888899999999999877654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.52  E-value=3.1e-06  Score=53.00  Aligned_cols=92  Identities=12%  Similarity=0.106  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141          48 WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQ  127 (144)
Q Consensus        48 ~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~  127 (144)
                      .-.++......++.++.+.+.+++|.|+.++++.+...+..... +-++.+.++.+..+.|++.+..+.....++.+..+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            34555666677888899999999999999999988888655543 45667888899999999999999999999999999


Q ss_pred             cchhhhhchhhhh
Q psy6141         128 PEVRGTLGLLPTF  140 (144)
Q Consensus       128 ~~~r~~~~~~~~~  140 (144)
                      +++|++-.++...
T Consensus       120 ~~~~~~~~~ifw~  132 (156)
T PF05978_consen  120 EETIGRNTGIFWA  132 (156)
T ss_pred             HHHHhhHHHHHHH
Confidence            9999987776543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.51  E-value=2.6e-08  Score=71.83  Aligned_cols=113  Identities=12%  Similarity=0.093  Sum_probs=86.3

Q ss_pred             ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh----hhcchhhHh-hhchHHHHHHHHHHHh-c-----
Q psy6141          27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIE----SLGRRTTIL-STGLPFIVSFLLIALA-N-----   95 (144)
Q Consensus        27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~g~r~~~~-~~~~~~~~~~~~~~~~-~-----   95 (144)
                      .+++.+..+  ..++++...+.+.....+...+..|+.|.++|    |+||||..+ .+.+...++...+... +     
T Consensus        22 ~~~~~f~~~--~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~   99 (428)
T PF13347_consen   22 SYLLYFYTD--VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF   99 (428)
T ss_pred             HHHHHHHHH--HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence            344444442  78999999999999999999999999999999    799888766 5667777766666554 3     


Q ss_pred             --hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhh
Q psy6141          96 --GVPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFL  141 (144)
Q Consensus        96 --~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~  141 (144)
                        ...++.+..++..++......+..++..|..+ +++|.+..+..+.+
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~  148 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIF  148 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHH
Confidence              12334566666788888888888999999998 56898877765543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.49  E-value=2.1e-06  Score=63.30  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhcchhh-------HhhhchHHHHHHHHHH-----Hh-----chHHHHHHHHHHhhh
Q psy6141          47 SWIGSLMPLSALFGGMAGGPLIESLGRRTT-------ILSTGLPFIVSFLLIA-----LA-----NGVPMILAGRCVAGF  109 (144)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~g~  109 (144)
                      .++++...+..++..++.+++.||.++|+.       +..+.++..++.+...     ..     .+.+++....++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            455666667788899999999999998873       5566666665554321     11     346777788899999


Q ss_pred             hhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         110 CVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       110 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +.+...+.....+.+..|++.++.+++++...
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~  423 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLT  423 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988754

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.46  E-value=2.5e-06  Score=60.88  Aligned_cols=110  Identities=15%  Similarity=-0.034  Sum_probs=74.3

Q ss_pred             ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch-HHHHHHHHHHH--hchHHHHHHHHH
Q psy6141          29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL-PFIVSFLLIAL--ANGVPMILAGRC  105 (144)
Q Consensus        29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~  105 (144)
                      .|.+.++  .++.++.+.++......++..++.++.+++.||.+++........ ...+.......  ..+.+.+.....
T Consensus       230 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T PRK11652        230 SGVLMGA--VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAA  307 (394)
T ss_pred             ChHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            4445541  478888888998888889999999999999999984333222211 11111111111  234556667778


Q ss_pred             HhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +.|++.+...+....+..|.+| +++++..++.+..
T Consensus       308 ~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  342 (394)
T PRK11652        308 LFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGL  342 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHH
Confidence            8899988888888888899887 4678887776543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.45  E-value=2.6e-07  Score=66.17  Aligned_cols=117  Identities=15%  Similarity=0.061  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141           7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV   86 (144)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~   86 (144)
                      ..+......+...+......|..|.++++  +.|++.+|.|.+.+...+..++.+|+.|.++||.|.||.++.......+
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~--~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQ--VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHH
Confidence            33444555666666678888889999872  4899999999999999999999999999999999987776544322221


Q ss_pred             --HH-HHHHH----hchH-HHHHHHHHHhhhhhhhhhhhHHHHHhhc
Q psy6141          87 --SF-LLIAL----ANGV-PMILAGRCVAGFCVGIASLALPVYLGET  125 (144)
Q Consensus        87 --~~-~~~~~----~~~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~  125 (144)
                        +. ....+    ..|. ...+++....|+......++..++..+.
T Consensus        86 l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~  132 (412)
T PF01306_consen   86 LFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV  132 (412)
T ss_dssp             TCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence              11 22122    2232 2334444445555555556666554433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11462 putative transporter; Provisional

Probab=98.35  E-value=1.7e-05  Score=58.09  Aligned_cols=84  Identities=17%  Similarity=0.065  Sum_probs=55.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-c-hHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy6141          44 EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-N-GVPMILAGRCVAGFCVGIASLALPVY  121 (144)
Q Consensus        44 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~g~~~g~~~~~~~~~  121 (144)
                      +..+.+.....++.+++.+++++++||+|+|+.+..+.....+......+. . +.+.+.+..++.|++.+...+.....
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777888889999999999999999988765444333323333222 2 23233444456677777766666777


Q ss_pred             HhhccC
Q psy6141         122 LGETVQ  127 (144)
Q Consensus       122 ~~~~~~  127 (144)
                      .+|..+
T Consensus       343 ~ad~~d  348 (460)
T PRK11462        343 MSDTVD  348 (460)
T ss_pred             HHHhHh
Confidence            777766

>TIGR00788 fbt folate/biopterin transporter

Probab=98.30  E-value=1.5e-06  Score=63.71  Aligned_cols=106  Identities=12%  Similarity=0.066  Sum_probs=87.6

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH----------hchHHHHHHHHHHh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL----------ANGVPMILAGRCVA  107 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  107 (144)
                      ..|.++.+.+.......++.+++....+++.+|++.|+.+.++.++.+++......          .++.+.......+.
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~  361 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA  361 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence            78999999999999999999999999999999999999999988888877644321          13333445556788


Q ss_pred             hhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141         108 GFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus       108 g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      +++.+....+...++++..|++++++..++.+...+
T Consensus       362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~  397 (468)
T TIGR00788       362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILH  397 (468)
T ss_pred             HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHH
Confidence            888888888889999999999999998888776543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.23  E-value=7e-05  Score=53.51  Aligned_cols=103  Identities=17%  Similarity=0.141  Sum_probs=86.9

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh-hhcchhhHhhhchHHHHHHHHHHH---hchHHHHHHHHHHhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIE-SLGRRTTILSTGLPFIVSFLLIAL---ANGVPMILAGRCVAGFCVGI  113 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~  113 (144)
                      .++++..|....+.....|.+++....|++.. |.++|+...+++...+.+......   ..+.+.+....++.|++.|.
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~  317 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL  317 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence            78999999999999999999999999998887 577777777788777777655443   45788888899999999999


Q ss_pred             hhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141         114 ASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus       114 ~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ........+.|..++++.|..+|.+..
T Consensus       318 f~vgals~mM~lt~~~~aG~~mG~WGa  344 (403)
T PF03209_consen  318 FTVGALSLMMDLTSAGRAGLFMGAWGA  344 (403)
T ss_pred             HHHHHHHHHHhCCCCcchhHHHHHHHH
Confidence            988888899999999988888877543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.16  E-value=3.9e-06  Score=61.00  Aligned_cols=135  Identities=15%  Similarity=0.140  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhH-hhh
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTI-LST   80 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~-~~~   80 (144)
                      +.-+.-..+-+..+........+++.+..+  ..|+++...|.+..+.-+-..+.-|+.|.+.||    +||+|.. +.+
T Consensus        12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTd--v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g   89 (467)
T COG2211          12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTD--VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG   89 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence            333444555566666666666777777774  899999999999999999999999999999998    6776655 556


Q ss_pred             chHHHHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhhc
Q psy6141          81 GLPFIVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFLG  142 (144)
Q Consensus        81 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~  142 (144)
                      .+..++....+..+++      .....+...+.+++......+..++..|+.+ ++||.+..+..+.+.
T Consensus        90 ~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~  158 (467)
T COG2211          90 AIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFA  158 (467)
T ss_pred             hHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHH
Confidence            6777777777666553      4455566778888888888888889999876 688998888766543

>KOG3762|consensus

Probab=98.14  E-value=4.2e-06  Score=61.44  Aligned_cols=115  Identities=14%  Similarity=0.047  Sum_probs=97.1

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA  102 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (144)
                      ......+-..++   +.+-.+...|........+-++.-++.+++..|+|+-+++.+++.....=.+...+..|+|+.+-
T Consensus       388 ~lv~tFLfWHle---d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLP  464 (618)
T KOG3762|consen  388 GLVFTFLFWHLE---DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLP  464 (618)
T ss_pred             HHHHHHHHHHHh---hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheee
Confidence            333334444555   67777777788888888888999999999999999999999888888877777788899999999


Q ss_pred             HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141         103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus       103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      .-+++|+..+..+....+|+++..||+.|.++.++.+.
T Consensus       465 ieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g  502 (618)
T KOG3762|consen  465 IEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQG  502 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHH
Confidence            99999999999999999999999999999998887653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.10  E-value=6.4e-05  Score=53.61  Aligned_cols=119  Identities=15%  Similarity=0.106  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS   87 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~   87 (144)
                      .....++.+++--.......+++.+.++  ..+.+..+.....+.+..+.++|.+.+.++..|+...|.+....+.....
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~--~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEE--LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            3444556666655666677788888882  37889999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141          88 FLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE  129 (144)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~  129 (144)
                      ++...++++...+ ...++.|...+..+|...+...+..|++
T Consensus       316 ~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~~~  356 (422)
T COG0738         316 LLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLGEH  356 (422)
T ss_pred             HHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccCcc
Confidence            8888888884443 3557889999999999999999999844

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.10  E-value=2.8e-08  Score=71.89  Aligned_cols=113  Identities=16%  Similarity=0.097  Sum_probs=70.4

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH--H---hch---
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA--L---ANG---   96 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~--~---~~~---   96 (144)
                      ...+.|.+.+   +.+.++.  -.......+...++.+....+.||+|||+.++.+....++......  .   .++   
T Consensus       272 ~~~~~~~i~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (451)
T PF00083_consen  272 IFYYSPSIFE---NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSW  346 (451)
T ss_pred             cccccccccc---ccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344555555   5555554  2233344455667777778999999999999988888777766653  1   121   


Q ss_pred             -HHHHHHHHHHhhhhhh-hhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          97 -VPMILAGRCVAGFCVG-IASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        97 -~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                       -...++...+.....+ +..+....+.+|.+|++.|.++.++.+...
T Consensus       347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~  394 (451)
T PF00083_consen  347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVG  394 (451)
T ss_pred             cccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence             1111122222222222 334566688899999999999998877644

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.00  E-value=0.00012  Score=52.84  Aligned_cols=115  Identities=10%  Similarity=0.032  Sum_probs=67.2

Q ss_pred             hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH-----HhchH
Q psy6141          23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA-----LANGV   97 (144)
Q Consensus        23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-----~~~~~   97 (144)
                      .......|.+.++  ..+.++.+.++.......+..++..+.+++.++..+++..........++.....     ..+++
T Consensus       235 ~~~~~~~P~~l~~--~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~  312 (413)
T PRK15403        235 MSWVAVSPVILID--AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVW  312 (413)
T ss_pred             HHHHHhChHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccH
Confidence            3444456777662  5689999999988888888888888888876555444443222222222222222     12334


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141          98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus        98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      +..++..++.+++.+...+...... ..-++..+|++.++...
T Consensus       313 ~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~  354 (413)
T PRK15403        313 LWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNM  354 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHH
Confidence            3456677778888888777665422 22122346766665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.97  E-value=0.00011  Score=54.33  Aligned_cols=96  Identities=14%  Similarity=0.162  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHhhhcch-h-h-----HhhhchHHHHHHHHHHHh---------chHHHHHHHHHHhh
Q psy6141          45 EASWIGSLMPLSALFGGMAGGPLIESLGRR-T-T-----ILSTGLPFIVSFLLIALA---------NGVPMILAGRCVAG  108 (144)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r-~-~-----~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g  108 (144)
                      ..++.++...+..++..|+.+++=.|.++| | .     +.++.++..++.+.+..+         .+.++++...+++.
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            356778888888888888888886666332 1 1     455666667666555431         25677888889999


Q ss_pred             hhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141         109 FCVGIASLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus       109 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      ++.-+..|...+.+++..|++.|+..+|.+..
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l  420 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYML  420 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence            99999999999999999999999999998754

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.95  E-value=4.8e-05  Score=57.18  Aligned_cols=131  Identities=18%  Similarity=0.112  Sum_probs=88.7

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCc---chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhh-HhhhchHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTE---EEASWIGSLMPLSALFGGMAGGPLIESLGRRTT-ILSTGLPF   84 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~-~~~~~~~~   84 (144)
                      ....+..+..+........+.|.....  .++.++   .+.++......++..++..+.|.+..+++|-|. ++.+.++.
T Consensus       313 ~~~lvi~fi~G~~~~s~~~l~p~~~~~--vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  313 AALLVISFISGMNFFSVNILWPQQVVN--VFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            333445555555555555556665441  222222   356788888899999999999999998887554 45666666


Q ss_pred             HHHHHHHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          85 IVSFLLIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        85 ~~~~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .++.-.++.  .+|....+...++.|++.|....+.....+-..|+++-+.+.++...+
T Consensus       391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~  449 (599)
T PF06609_consen  391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSI  449 (599)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHH
Confidence            655444443  245555667788899999998888888888888998888888776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.91  E-value=7.4e-05  Score=53.37  Aligned_cols=103  Identities=14%  Similarity=0.005  Sum_probs=74.2

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc-----chhhHhh-hchHHHHHHHHHHH-----hc--------hHH
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG-----RRTTILS-TGLPFIVSFLLIAL-----AN--------GVP   98 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----~r~~~~~-~~~~~~~~~~~~~~-----~~--------~~~   98 (144)
                      |++.+..-.+.......+... ..+.+|+.+|+.+     ||..+++ +......+..+..+     ..        .+.
T Consensus         9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~   87 (403)
T PF03209_consen    9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL   87 (403)
T ss_pred             HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence            677777777776666655544 6999999999998     8888765 44444444444332     22        222


Q ss_pred             ---HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          99 ---MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        99 ---~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                         ...+...+.|++.+.......+.++|..|+|+|+++.++.+.+
T Consensus        88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~M  133 (403)
T PF03209_consen   88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVM  133 (403)
T ss_pred             HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHH
Confidence               2334567788998888899999999999999999998887654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2533|consensus

Probab=97.86  E-value=9.3e-05  Score=54.68  Aligned_cols=126  Identities=10%  Similarity=0.078  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhHhhhc
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTILSTG   81 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~~~~~   81 (144)
                      ..++..++..++.....+....++|.+.++  ..+.+..+.........++.+++.+..|.++||    ..+|.......
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~--~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~  350 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKS--NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFL  350 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHc--CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            345667777888888888888899999982  366888999999999999999999999999999    55666555544


Q ss_pred             hHHHHHH-HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhh
Q psy6141          82 LPFIVSF-LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT  133 (144)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~  133 (144)
                      .+..... ......++.+......+....+.+...+......++....+.|..
T Consensus       351 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~  403 (495)
T KOG2533|consen  351 CLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKAL  403 (495)
T ss_pred             HHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhH
Confidence            4444433 333333334444433444445555556666777777776666544

>KOG0637|consensus

Probab=97.81  E-value=4.2e-05  Score=55.30  Aligned_cols=133  Identities=20%  Similarity=0.189  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhHhhhc
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTILSTG   81 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~~~~~   81 (144)
                      +..+.+....+..-+....-..+.|.+..   +.+.+....+.+.....+..++.+|..|..+||    +||||..+...
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~---~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~  108 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ---SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAG  108 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH---HcCCCcccccccccccccccceecccccccccccccccccccchHHHh
Confidence            44444444455555555666667777777   789988888888888999999999999999998    89999887644


Q ss_pred             -hHHHHHHHHHHHhchH-----------------HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhh-hchhhhhh
Q psy6141          82 -LPFIVSFLLIALANGV-----------------PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT-LGLLPTFL  141 (144)
Q Consensus        82 -~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~  141 (144)
                       ....++..+..+++++                 ..+++..-+.=++....+.+.-++..|....++|.+ +++.+..+
T Consensus       109 s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f  187 (498)
T KOG0637|consen  109 SLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFF  187 (498)
T ss_pred             hHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHH
Confidence             4444455555554332                 123333344445666778888899999988766666 77766554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.80  E-value=0.00011  Score=56.08  Aligned_cols=105  Identities=14%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhchHHHHHHHHHHHhch--------HHHHHHHHHHhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPFIVSFLLIALANG--------VPMILAGRCVAG  108 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g  108 (144)
                      .++.+.++...+...+....-+...++|+++|+ +|+++++.++.++..++..+......        ....+++..+..
T Consensus        17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia   96 (654)
T TIGR00926        17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA   96 (654)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence            567788888888888888888899999999999 69999999999999998887766421        123556677788


Q ss_pred             hhhhhhhhhHHHHHhhccCcch---hhhhchhhhhhc
Q psy6141         109 FCVGIASLALPVYLGETVQPEV---RGTLGLLPTFLG  142 (144)
Q Consensus       109 ~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~  142 (144)
                      .|.|++-+...+...|.+++++   |.....+.+..+
T Consensus        97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~i  133 (654)
T TIGR00926        97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAI  133 (654)
T ss_pred             hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHH
Confidence            8889988989999999988654   344555554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.79  E-value=0.00093  Score=49.32  Aligned_cols=96  Identities=8%  Similarity=-0.085  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhhchHHHHHHHHHHHhch---------------------HHHHHHHH
Q psy6141          47 SWIGSLMPLSALFGGMAGGPLIESLGR-RTTILSTGLPFIVSFLLIALANG---------------------VPMILAGR  104 (144)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  104 (144)
                      .+....+.+...+.+++..++.+|+|+ |+....+.++.+++.....+.++                     .+..++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            344555666666888889999999995 67768887777777766654332                     25667777


Q ss_pred             HHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhhc
Q psy6141         105 CVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFLG  142 (144)
Q Consensus       105 ~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~  142 (144)
                      ...|+..+..+...++++++..|++.  .|..+|+.+.+.
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I  427 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAI  427 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHH
Confidence            88999999999999999999999644  488888887664

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.75  E-value=0.0002  Score=51.50  Aligned_cols=119  Identities=13%  Similarity=0.035  Sum_probs=80.1

Q ss_pred             hcccccccccccC-CCCCCC----CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh-hchHHHHHHHHHHHhch
Q psy6141          23 AYTSPAIPSMNQM-GSRVSP----TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS-TGLPFIVSFLLIALANG   96 (144)
Q Consensus        23 ~~~~~~~p~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~~~~~~   96 (144)
                      .....+.|.|.++ ..+-+.    +....+...++..+...+-+|..|.++|+.|+||..+. ...+..++.....+.++
T Consensus        32 ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~  111 (438)
T COG2270          32 IVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP  111 (438)
T ss_pred             eeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence            3344556666553 111111    22445777888888888999999999999998777654 44444445555555433


Q ss_pred             --HH-HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          97 --VP-MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        97 --~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                        .+ ..++...+..++....+...++++.+..++++-++..++.+..
T Consensus       112 ~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~  159 (438)
T COG2270         112 GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWAL  159 (438)
T ss_pred             CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCccccccccc
Confidence              44 4455567778888888889999999999998888877665443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.74  E-value=6e-06  Score=61.51  Aligned_cols=130  Identities=14%  Similarity=0.080  Sum_probs=2.9

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL   89 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   89 (144)
                      ..++..+............+..+.+   .++++.++.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.+++.+
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~   83 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL   83 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence            3344444455555666666777776   8999999999999999999999999999999998888888888888888877


Q ss_pred             HHHHhc--------------------------------------------------hHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141          90 LIALAN--------------------------------------------------GVPMILAGRCVAGFCVGIASLALP  119 (144)
Q Consensus        90 ~~~~~~--------------------------------------------------~~~~~~~~~~~~g~~~g~~~~~~~  119 (144)
                      ++++.+                                                  -+..++++.++.|+|....+++..
T Consensus        84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~  163 (539)
T PF03137_consen   84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI  163 (539)
T ss_dssp             --------------------------------------------------------------------SSS---------
T ss_pred             HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence            665300                                                  023467788999999999999999


Q ss_pred             HHHhhccCcchhhhhchhhhhhc
Q psy6141         120 VYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       120 ~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +|+-|..++++-+...|+.+...
T Consensus       164 tYiDDnv~~~~splYiGi~~~~~  186 (539)
T PF03137_consen  164 TYIDDNVSKKNSPLYIGILYAMS  186 (539)
T ss_dssp             -----------------------
T ss_pred             eeeccccccccCccchhhhhHHh
Confidence            99999999999888888876653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.73  E-value=0.00033  Score=51.71  Aligned_cols=86  Identities=19%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc-hHHHHHHHHHHHh-c-hHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy6141          46 ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG-LPFIVSFLLIALA-N-GVPMILAGRCVAGFCVGIASLALPVYL  122 (144)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~g~~~g~~~~~~~~~~  122 (144)
                      .+...++..+...+..|+.|.++|+-|+||.++... .+..+....+.+. + +++...+..++.-++.+......++++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            466788888999999999999999999888776543 4444455555442 3 344444444555567777788899999


Q ss_pred             hhccCcchh
Q psy6141         123 GETVQPEVR  131 (144)
Q Consensus       123 ~~~~~~~~r  131 (144)
                      .|+.+++++
T Consensus       152 P~la~~~~~  160 (477)
T PF11700_consen  152 PDLARPEPR  160 (477)
T ss_pred             HhhcCCChh
Confidence            999998888

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2532|consensus

Probab=97.69  E-value=0.00012  Score=53.79  Aligned_cols=66  Identities=11%  Similarity=0.078  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR   73 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~   73 (144)
                      ..++.+.+..+...+.......+.|.|.++  .++.+..+.|+..++..+...+..++.|+++||.-+
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~--VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKE--VLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456777888888888899999999999983  799999999999999999999999999999999855

>KOG3762|consensus

Probab=97.69  E-value=2.7e-05  Score=57.37  Aligned_cols=70  Identities=14%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141          14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV   86 (144)
Q Consensus        14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~   86 (144)
                      ..+..+.......|.++.+.+   .+|+++.+.+.+.....+..+++.|++|+++||+-+||.++++..+...
T Consensus        19 f~~~~~~~~g~l~pll~vy~k---QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   19 FYLFFGARFGSLFPLLAVYFK---QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             eeeeeeecccccchHHHHHHH---HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            334445555667777788877   8999999999999999999999999999999999888877766555444

>KOG0252|consensus

Probab=97.66  E-value=8.3e-06  Score=58.99  Aligned_cols=134  Identities=13%  Similarity=-0.060  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchh--------H-HHHHHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEA--------S-WIGSLMPLSALFGGMAGGPLIESLGRRTT   76 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~i~~~~~g~l~d~~g~r~~   76 (144)
                      ......+...|......+........+.+   +.+..+.+.        . .-..+..++++.+.++...+.|++|||+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~---~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i  380 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS---AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI  380 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH---hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence            34455555556655555555555555554   333322211        1 12333455566688888999999999999


Q ss_pred             HhhhchHHHHHHHHHHHhchH----HHHH-HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          77 ILSTGLPFIVSFLLIALANGV----PMIL-AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .+.+.++..+..+..+...|.    ..+. ...+.+=++.-+.......+.+|.||++.|++..|+....+
T Consensus       381 q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~G  451 (538)
T KOG0252|consen  381 QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASG  451 (538)
T ss_pred             HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhc
Confidence            999999999988887765441    1122 22222333333444556678899999999999988876543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.60  E-value=0.0013  Score=47.93  Aligned_cols=114  Identities=16%  Similarity=0.093  Sum_probs=82.7

Q ss_pred             ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---hc------
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL---AN------   95 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~~------   95 (144)
                      +...+..|.+   ..|+++.+.+..-+...+..+.+.+..+++.+|+|..|.=+++.........++..   .+      
T Consensus       277 f~~lmt~yl~---~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~  353 (432)
T PF06963_consen  277 FGGLMTAYLK---SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSS  353 (432)
T ss_pred             CcHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence            3444555666   66999999999999999999999999999999999988877777666655544432   21      


Q ss_pred             -hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          96 -GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        96 -~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                       +...++.+-.+.-+|.=+.+-...-+++|..|+++|+...|.....
T Consensus       354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl  400 (432)
T PF06963_consen  354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSL  400 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHH
Confidence             1222333333333454455667778999999999999999887654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2816|consensus

Probab=97.55  E-value=0.00065  Score=49.92  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhh--hhhhhhHHHHHhhccCcc
Q psy6141          52 LMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCV--GIASLALPVYLGETVQPE  129 (144)
Q Consensus        52 ~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--g~~~~~~~~~~~~~~~~~  129 (144)
                      ...+..++..+..|.++||+|||..+........+..+...+..  +++.+   +.++..  +...+...++++|...++
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence            44788899999999999999999999998888888777776655  33333   444332  344567788999999999


Q ss_pred             hhhhhchhhhh
Q psy6141         130 VRGTLGLLPTF  140 (144)
Q Consensus       130 ~r~~~~~~~~~  140 (144)
                      +|....++.+.
T Consensus       145 ~R~~~~gll~~  155 (463)
T KOG2816|consen  145 ERSSSIGLLSG  155 (463)
T ss_pred             HHHHHHHHHHH
Confidence            99988887665

>KOG2816|consensus

Probab=97.54  E-value=0.0019  Score=47.53  Aligned_cols=110  Identities=21%  Similarity=0.184  Sum_probs=90.2

Q ss_pred             ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhH-HHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHh
Q psy6141          29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGG-PLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVA  107 (144)
Q Consensus        29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (144)
                      .+.+.+.  .++.++.+.+...+.......+++.+.. .+...+|-|+....+...-.+.....+++.+.|+......+.
T Consensus       264 ~~~yl~~--~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~  341 (463)
T KOG2816|consen  264 LLLYLKA--KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVV  341 (463)
T ss_pred             EEEEEee--ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHH
Confidence            3445442  7889999999888888888888888876 788889999988889999999999999999999988877776


Q ss_pred             hhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         108 GFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       108 g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ++. +...+...+..+...+++++|+..++.+..
T Consensus       342 ~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i  374 (463)
T KOG2816|consen  342 ALA-GIVFPAIRAFASILVSPEEQGKVFGIISGI  374 (463)
T ss_pred             Hhh-cchhHHHHhHHHhhcccccccchhhHHHHH
Confidence            666 455778888999999999999988876543

>KOG3764|consensus

Probab=97.44  E-value=0.00019  Score=51.36  Aligned_cols=114  Identities=19%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             hhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhH--hhhchHHHHHHHHHHHh
Q psy6141          17 IVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTI--LSTGLPFIVSFLLIALA   94 (144)
Q Consensus        17 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~--~~~~~~~~~~~~~~~~~   94 (144)
                      ..+......-|.++.+..  +....+.-+.+.......+.+.++..+.|.+.||+++.+.+  ..+.+.....+....++
T Consensus       281 ~~n~~lafLePtlslwm~--e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~  358 (464)
T KOG3764|consen  281 FSNSSLAFLEPTLSLWML--ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA  358 (464)
T ss_pred             hccchHHHhCcccHHHHH--HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh
Confidence            344455566666677555  25554445899999999999999999999999999954443  34444445555566778


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhh
Q psy6141          95 NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRG  132 (144)
Q Consensus        95 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~  132 (144)
                      +++..+.+-+...+++.+...+...-...+..+.++-.
T Consensus       359 ~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s  396 (464)
T KOG3764|consen  359 TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVS  396 (464)
T ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcc
Confidence            99999999898899888888877766777777655443

>KOG0255|consensus

Probab=97.28  E-value=0.0059  Score=45.45  Aligned_cols=88  Identities=19%  Similarity=0.146  Sum_probs=66.4

Q ss_pred             HHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHH---HHHHHHHHhhhhhhhhhhhHHHHHhhccCcch
Q psy6141          54 PLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVP---MILAGRCVAGFCVGIASLALPVYLGETVQPEV  130 (144)
Q Consensus        54 ~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~  130 (144)
                      ......+....+...|+.|||.....+.....++.+...+..+..   ...+...+..++.+........+.+|.+|+..
T Consensus       360 ~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~  439 (521)
T KOG0255|consen  360 GLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV  439 (521)
T ss_pred             HHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            335666677778999999999999999999999988888754322   24444455555556666667889999999999


Q ss_pred             hhhhchhhhhh
Q psy6141         131 RGTLGLLPTFL  141 (144)
Q Consensus       131 r~~~~~~~~~~  141 (144)
                      |..+.+..+..
T Consensus       440 r~~~~~~~~~~  450 (521)
T KOG0255|consen  440 RNTAVGAISAA  450 (521)
T ss_pred             HHHHHHHHHHH
Confidence            99988776654

>KOG4332|consensus

Probab=97.19  E-value=0.0002  Score=49.09  Aligned_cols=88  Identities=15%  Similarity=0.199  Sum_probs=67.0

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA  117 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  117 (144)
                      .++....+++..........++...+.|.++||-|||+....-++....+++ .-.++.+-.++++|.+-|+.....++.
T Consensus        66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSa  144 (454)
T KOG4332|consen   66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSA  144 (454)
T ss_pred             hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHH
Confidence            6777788888877777777888888999999999999987766655554433 234677888999999999998887776


Q ss_pred             HHH-HHhhcc
Q psy6141         118 LPV-YLGETV  126 (144)
Q Consensus       118 ~~~-~~~~~~  126 (144)
                      -.. ++.|.-
T Consensus       145 FEsWliaEHn  154 (454)
T KOG4332|consen  145 FESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHhh
Confidence            655 445554

>PTZ00207 hypothetical protein; Provisional

Probab=97.18  E-value=0.0033  Score=47.70  Aligned_cols=87  Identities=10%  Similarity=0.094  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhcchh--------h-HhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141          49 IGSLMPLSALFGGMAGGPLIESLGRRT--------T-ILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALP  119 (144)
Q Consensus        49 ~~~~~~~~~~i~~~~~g~l~d~~g~r~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  119 (144)
                      ..+..++++.+|.+..|.+....-+|+        . +.+..+ ..++.+++.+......+.+..++.|++.|...++..
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            688899999999999998883322222        1 222223 444555555543335788999999999999999999


Q ss_pred             HHHhhccCcchhhhhchh
Q psy6141         120 VYLGETVQPEVRGTLGLL  137 (144)
Q Consensus       120 ~~~~~~~~~~~r~~~~~~  137 (144)
                      ...+|+|. |+-|+-..+
T Consensus       475 ~i~selFg-k~~g~~yN~  491 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNF  491 (591)
T ss_pred             HHHHHHhc-cchHHHhhH
Confidence            99999999 777764443

>KOG3098|consensus

Probab=97.08  E-value=0.0019  Score=47.31  Aligned_cols=91  Identities=9%  Similarity=0.006  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141          50 GSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE  129 (144)
Q Consensus        50 ~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~  129 (144)
                      +.+......++.++.+.+.|+.|+|+.+.++............+. |-+.+++...+.|+|.+..+.-...+++|..++|
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            677777888999999999999999999999988888876665554 5677788899999999998888889999999999


Q ss_pred             hhhhhchhhhhh
Q psy6141         130 VRGTLGLLPTFL  141 (144)
Q Consensus       130 ~r~~~~~~~~~~  141 (144)
                      .+.+-.++....
T Consensus       135 tie~Nisi~Wai  146 (461)
T KOG3098|consen  135 TIERNISIFWAI  146 (461)
T ss_pred             hHHHHHHHHHHH
Confidence            888877765443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.02  E-value=0.032  Score=40.52  Aligned_cols=111  Identities=18%  Similarity=0.162  Sum_probs=85.1

Q ss_pred             ccccccccccCCCCCCCCcchhH-HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141          25 TSPAIPSMNQMGSRVSPTEEEAS-WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG  103 (144)
Q Consensus        25 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (144)
                      .-|++..++.. .+.|++.+|.. -+.-...-.++...++...++|..+.|+++++..+...+...+..+.++...+-+.
T Consensus        22 sEPfl~~yL~~-~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~  100 (412)
T PF01770_consen   22 SEPFLTPYLTG-PDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLM  100 (412)
T ss_pred             CCccchHHHcC-CccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence            33444444431 23788887764 45666666778888999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141         104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLL  137 (144)
Q Consensus       104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  137 (144)
                      -++.|+..+. ..+..+|+-...|+++-.++.+.
T Consensus       101 q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~  133 (412)
T PF01770_consen  101 QFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSY  133 (412)
T ss_pred             HHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHH
Confidence            9999999766 45667777777777765555544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2615|consensus

Probab=96.92  E-value=0.0057  Score=43.91  Aligned_cols=105  Identities=21%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc--chhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG--RRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIAS  115 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  115 (144)
                      .++.++.+.|-+.+...+...+.+....+..||..  .+-.+..+.....-..+....++....+.++..+..+......
T Consensus       291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~v  370 (451)
T KOG2615|consen  291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVV  370 (451)
T ss_pred             ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhh
Confidence            78999999999999999988888888888888876  4555555555555555556667777888888888888877777


Q ss_pred             hhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         116 LALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       116 ~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +.....+....|.++||..+|+.....
T Consensus       371 t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~  397 (451)
T KOG2615|consen  371 TCLTSLVHKYGPQSQRGTLNGIFRSLG  397 (451)
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHHH
Confidence            777788889999999999998876543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.83  E-value=0.0017  Score=49.69  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=55.8

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHH-HHHHHHHhhHHHHhhhcc--hhhHhhhchHHHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPL-SALFGGMAGGPLIESLGR--RTTILSTGLPFIV   86 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g~--r~~~~~~~~~~~~   86 (144)
                      ...+..+........+..++|.+.++  .++.++.+.+++.....+ +.+++.+++|++.||+++  |+.+..+.+...+
T Consensus       334 ~~~l~~~~~~~~~~~~~~~lP~yl~~--~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~  411 (633)
T TIGR00805       334 LVILAQVIDSLAFNGYITFLPKYLEN--QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTL  411 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHH
Confidence            34444455555556666788999873  789999999998887766 678999999999999984  5555555555555


Q ss_pred             HH
Q psy6141          87 SF   88 (144)
Q Consensus        87 ~~   88 (144)
                      +.
T Consensus       412 ~~  413 (633)
T TIGR00805       412 SY  413 (633)
T ss_pred             HH
Confidence            43

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.61  E-value=0.076  Score=39.44  Aligned_cols=138  Identities=10%  Similarity=0.011  Sum_probs=80.4

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHH-HHhhHHHHhhhcchhhHhhhch
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFG-GMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      .+...+...+..++..+.+...-+.-..+..  +..+.+.++..++-+...+...+. .++.+++++|++|++.+-....
T Consensus         5 E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv--~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         5 ELKKFLPLFLMFFCILFNYTILRDTKDTLVV--TAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhheee--cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            3444455555556655555544333222211  011334567888887776666655 8899999999999998877666


Q ss_pred             HHHHHHHHHHHh----ch---------------------------HHHHHHHHHHhhhhhhhhhh-hHHHHHhhccCcch
Q psy6141          83 PFIVSFLLIALA----NG---------------------------VPMILAGRCVAGFCVGIASL-ALPVYLGETVQPEV  130 (144)
Q Consensus        83 ~~~~~~~~~~~~----~~---------------------------~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~~~  130 (144)
                      .+.....++++.    ++                           .|...+..+...+-.....+ .-+..++|.++++|
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            666655554432    11                           11111222223333333344 67889999999988


Q ss_pred             hhhhchhhhhhcc
Q psy6141         131 RGTLGLLPTFLGN  143 (144)
Q Consensus       131 r~~~~~~~~~~~~  143 (144)
                      -.|..++.....+
T Consensus       163 akRfy~l~~~gan  175 (472)
T TIGR00769       163 AKRFYALFGLGAN  175 (472)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776655443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.55  E-value=0.056  Score=40.09  Aligned_cols=97  Identities=16%  Similarity=0.143  Sum_probs=72.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHhhhcchh-------hHhhhchHHHHHHHHHHHh----------chHHHHHHHHHHh
Q psy6141          45 EASWIGSLMPLSALFGGMAGGPLIESLGRRT-------TILSTGLPFIVSFLLIALA----------NGVPMILAGRCVA  107 (144)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~-------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  107 (144)
                      ...+.++...+..++..|+..++-.+.++|+       -+-++..+...+.++....          .+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            3467788888888999999888888855441       1234445555554444332          2578888899999


Q ss_pred             hhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         108 GFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       108 g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      +++.=+..|....+++...|++-.+..++++...
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt  438 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT  438 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888876543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.53  E-value=0.015  Score=42.56  Aligned_cols=105  Identities=23%  Similarity=0.200  Sum_probs=71.0

Q ss_pred             ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc----chhhH-hhhchHHHHHHHHHHHh----chHHH
Q psy6141          29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG----RRTTI-LSTGLPFIVSFLLIALA----NGVPM   99 (144)
Q Consensus        29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g----~r~~~-~~~~~~~~~~~~~~~~~----~~~~~   99 (144)
                      .|.+.+   +++.++.+.....+...+.. ...++.|.++|.+-    |||.+ +++.++..++....+..    .+...
T Consensus        13 ~~~l~~---~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   13 YPFLKD---DLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHH---HcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            344444   89999998887777666654 46889999999973    55554 45666655555544442    34555


Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchh
Q psy6141         100 ILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLL  137 (144)
Q Consensus       100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~  137 (144)
                      ..+..++..++....+....+...|....+.  |+...+.
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~  128 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSF  128 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHH
Confidence            6666677888888999999999999875432  4444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3098|consensus

Probab=96.15  E-value=0.13  Score=38.06  Aligned_cols=127  Identities=17%  Similarity=0.179  Sum_probs=79.8

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCCCCc-chhHHHHHHHHHHHHHHHHhhHHHHhh---hcchhhHhhhchHHH
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTE-EEASWIGSLMPLSALFGGMAGGPLIES---LGRRTTILSTGLPFI   85 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~---~g~r~~~~~~~~~~~   85 (144)
                      .+....+..|..........|.-....+..+.+. ...+.......++..++....+.+.+|   +||++.+..+.++..
T Consensus       244 ~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~  323 (461)
T KOG3098|consen  244 LLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHL  323 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHH
Confidence            3344444455555555555555443211222222 334455555667777777777777766   688888888887777


Q ss_pred             HHHHHHHHh------------------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141          86 VSFLLIALA------------------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLL  137 (144)
Q Consensus        86 ~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  137 (144)
                      +..++....                  ++.....+..++.|++-.......+.++.+.. +++|..+.++
T Consensus       324 ~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi  392 (461)
T KOG3098|consen  324 IGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSL  392 (461)
T ss_pred             HHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHH
Confidence            776665431                  13456667778999999999999999999998 4445544433

>KOG1330|consensus

Probab=95.97  E-value=0.02  Score=42.04  Aligned_cols=101  Identities=14%  Similarity=0.028  Sum_probs=59.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-------hhhHhhhchHHHHHHHH----HH-HhchHHHHHHHHHHh
Q psy6141          40 SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-------RTTILSTGLPFIVSFLL----IA-LANGVPMILAGRCVA  107 (144)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-------r~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~  107 (144)
                      +.+..+..+...+...+..+|..++|.++||+.|       .+.--+...+.+...+.    .. .+.+...+.+..++.
T Consensus       279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~  358 (493)
T KOG1330|consen  279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV  358 (493)
T ss_pred             CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3455556667778888889999999999999533       12111111111111111    11 223333344445556


Q ss_pred             hhhhhhh-hhhHHHHHhhccCcchhhhhchhhhh
Q psy6141         108 GFCVGIA-SLALPVYLGETVQPEVRGTLGLLPTF  140 (144)
Q Consensus       108 g~~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~  140 (144)
                      |...... .+...-...|..|+++|..+.++...
T Consensus       359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~  392 (493)
T KOG1330|consen  359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTV  392 (493)
T ss_pred             HHHHHhcccccccceeeEecCcccccHHHHHHHH
Confidence            6554433 34455577999999999998887654

>KOG3626|consensus

Probab=95.90  E-value=0.0059  Score=47.14  Aligned_cols=132  Identities=14%  Similarity=0.073  Sum_probs=106.7

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS   87 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~   87 (144)
                      +...++..+..++....+...+..+.+   .++++.++.|++.+.+-++..+...+..+...|.-|-|.+-.+.++.+++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg  175 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG  175 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence            345556666666666666666666666   78999999999999999999999999999999999988888999999988


Q ss_pred             HHHHHHh--------------------c---------------------------h----HH-HHHHHHHHhhhhhhhhh
Q psy6141          88 FLLIALA--------------------N---------------------------G----VP-MILAGRCVAGFCVGIAS  115 (144)
Q Consensus        88 ~~~~~~~--------------------~---------------------------~----~~-~~~~~~~~~g~~~g~~~  115 (144)
                      .++.++.                    +                           +    ++ .++++.++.|+|....+
T Consensus       176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~  255 (735)
T KOG3626|consen  176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF  255 (735)
T ss_pred             HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence            8877641                    0                           0    12 45667899999999999


Q ss_pred             hhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         116 LALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       116 ~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ++...|+-|...+++-+...|+.+...
T Consensus       256 tlGisYiDDnvk~~~SplYlgi~~~~~  282 (735)
T KOG3626|consen  256 TLGISYIDDNVKKKNSPLYLGILYSMA  282 (735)
T ss_pred             cCCCccccccccccCCcHHHHHHHHHH
Confidence            999999999999998888888877653

>TIGR01272 gluP glucose/galactose transporter

Probab=95.81  E-value=0.015  Score=40.65  Aligned_cols=52  Identities=15%  Similarity=0.024  Sum_probs=46.2

Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      ...++++.+++..++.|.|.+..++..+.++++..|+|++++.+++.+.+..
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~   56 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNK   56 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhh
Confidence            3457899999999999999999999999999999999999998888877654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3574|consensus

Probab=95.79  E-value=0.12  Score=37.53  Aligned_cols=127  Identities=12%  Similarity=0.125  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh-----hhcchhhHh
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIE-----SLGRRTTIL   78 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-----~~g~r~~~~   78 (144)
                      ....+..+.+.+...+....... .+|.+++   .-+.|.++.+....++.-  .--.+.|.++.|     |+||||.-+
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhc---CCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhcccccee
Confidence            34455666777788888777777 8899887   667777666554333222  234677888888     999999865


Q ss_pred             hhchHHHHHHHH--HHH-----------hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141          79 STGLPFIVSFLL--IAL-----------ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLL  137 (144)
Q Consensus        79 ~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  137 (144)
                      +- .-..++.+.  ...           .++........++.-+..+.-..+...+.-....+++-|.+...
T Consensus       103 vp-~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~  173 (510)
T KOG3574|consen  103 VP-CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTC  173 (510)
T ss_pred             ee-hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHH
Confidence            42 222222222  222           12233333344556666666677777777777777777655543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.18  E-value=0.28  Score=35.72  Aligned_cols=96  Identities=15%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH-----HHHhchHHHHHHHHHHhhhhhhhhhh
Q psy6141          42 TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL-----IALANGVPMILAGRCVAGFCVGIASL  116 (144)
Q Consensus        42 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~g~~~~  116 (144)
                      ..++..+....+.+|-+++.--...    +.-|+..+.+.+-.+-..+.     .-+.++.|..++.-+..|+..|..+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~----~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPF----FRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceee----eehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            3456777777777776666543322    22344444433222222111     12356788888888899999999999


Q ss_pred             hHHHHHhhccCcchhhhhchhhhhh
Q psy6141         117 ALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       117 ~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .....+.|-.|+++|..+++.....
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvs  379 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVS  379 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            8888899999999999888876654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2563|consensus

Probab=95.00  E-value=0.024  Score=41.50  Aligned_cols=94  Identities=19%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhhchHHHHHHH-HHHHh---chHHHHHHHHHHhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-RTTILSTGLPFIVSFL-LIALA---NGVPMILAGRCVAGFCVG  112 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~g~~~g  112 (144)
                      ..+.+....|.+.....++.++++...|.+.||... |++.+.......++.. +....   .+.+.+...-.+.|.+..
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~  374 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT  374 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence            445566788999999999999999999999999864 5555555555555532 22222   223344455566777777


Q ss_pred             hhhhhHHHHHhhc-cCcchh
Q psy6141         113 IASLALPVYLGET-VQPEVR  131 (144)
Q Consensus       113 ~~~~~~~~~~~~~-~~~~~r  131 (144)
                      ...|+..-...|. +|..++
T Consensus       375 ~~~Pig~ElgvE~TyPv~E~  394 (480)
T KOG2563|consen  375 GYLPIGFELGVETTYPVAEG  394 (480)
T ss_pred             CCCCcceeeeeeeccccCCc
Confidence            7778777777775 454443

>KOG1237|consensus

Probab=93.98  E-value=0.52  Score=36.06  Aligned_cols=90  Identities=13%  Similarity=0.126  Sum_probs=67.1

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhchHHHHHHHHHHHhch--------------------
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGLPFIVSFLLIALANG--------------------   96 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~--------------------   96 (144)
                      +++.+...+.-....+.-........++.++|.+ ||-+++.++.++...+......+..                    
T Consensus        67 ~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~  146 (571)
T KOG1237|consen   67 ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCES  146 (571)
T ss_pred             HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccC
Confidence            6777776666677777777778889999999995 8888888888888887655543211                    


Q ss_pred             -----HHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141          97 -----VPMILAGRCVAGFCVGIASLALPVYLGETVQ  127 (144)
Q Consensus        97 -----~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~  127 (144)
                           ...+..+.-+..+|.|+.-+.....-+|-++
T Consensus       147 ~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd  182 (571)
T KOG1237|consen  147 PSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFD  182 (571)
T ss_pred             cchHHHHHHHHHHHHheeccCCCCCcchhhcccccC
Confidence                 1235556666777888888888888899888

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.77  E-value=2  Score=31.58  Aligned_cols=97  Identities=10%  Similarity=0.037  Sum_probs=69.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh--hhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy6141          45 EASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL--STGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYL  122 (144)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~  122 (144)
                      .-|.+-....+...++.+..|++..++++-.-+.  ....+.+...+++...++.|...++.++.+...-...++...-+
T Consensus       286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qI  365 (412)
T PF01770_consen  286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQI  365 (412)
T ss_pred             cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4477777788888889999999877776644333  33344444556667788999988888887777766667777777


Q ss_pred             hhccCcchhhhhchhhhhh
Q psy6141         123 GETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       123 ~~~~~~~~r~~~~~~~~~~  141 (144)
                      +....++.-+...|++.+.
T Consensus       366 A~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  366 AKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHhccccceeeeeeeHHHH
Confidence            7777777777777776654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.19  E-value=1.7  Score=32.14  Aligned_cols=96  Identities=18%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHhhhcch-hhHhhhchH---HHHHHHHHHHh---------chHHHHHHHHHHhhhhh
Q psy6141          45 EASWIGSLMPLSALFGGMAGGPLIESLGRR-TTILSTGLP---FIVSFLLIALA---------NGVPMILAGRCVAGFCV  111 (144)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r-~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~  111 (144)
                      ..-.....++++..+|..+..+.. .-++| +.+.+..+.   ++...+++...         ++-+..++..++.|+.+
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            345667778888888888554321 11222 122222222   22222223221         24445566688999999


Q ss_pred             hhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         112 GIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       112 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      |-..+....+..+..++++|..+..+...+
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~  416 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIF  416 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998777665543

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.08  E-value=2.3  Score=32.05  Aligned_cols=96  Identities=7%  Similarity=-0.008  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHhhhcc--hhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHh
Q psy6141          46 ASWIGSLMPLSALFGGMAGGPLIESLGR--RTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG  123 (144)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~  123 (144)
                      -|.+-.+..+...+..+..|++-.++.+  ...+.+...+.+...+++..++|+|..+++.++.+.......++...-++
T Consensus       300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA  379 (511)
T TIGR00806       300 NGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIA  379 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666777778888888988776643  12223333344444556677899999999999888888888888888778


Q ss_pred             hccCcchhhhhchhhhhh
Q psy6141         124 ETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       124 ~~~~~~~r~~~~~~~~~~  141 (144)
                      +....+.-|...|++.+.
T Consensus       380 ~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       380 SSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHhcccceEEEEecHHHH
Confidence            877777778887776654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=90.68  E-value=0.074  Score=40.20  Aligned_cols=73  Identities=14%  Similarity=0.230  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHH-HHHHHHHhhHHHHhhhc--chhhHhhhchH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPL-SALFGGMAGGPLIESLG--RRTTILSTGLP   83 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g--~r~~~~~~~~~   83 (144)
                      ....++..........+.++.|+|.|.  +++.++.++..+.....+ +..+|.+++|.+..|+.  .|+......+.
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~--QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~  383 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLES--QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV  383 (539)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence            344556666777778888999999995  899999888887766555 67789999999999975  34444433333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=90.31  E-value=1.4  Score=25.87  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=24.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141          45 EASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      ..+.......++..++....+.+.|..|.+..+.....
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAI  125 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHH
Confidence            34555666677777777777777777776555444333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=89.74  E-value=0.57  Score=33.54  Aligned_cols=67  Identities=12%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             hhHhhhchHHHHHHHHHHHhc---------hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch---hhhhchhhhhh
Q psy6141          75 TTILSTGLPFIVSFLLIALAN---------GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV---RGTLGLLPTFL  141 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~  141 (144)
                      |+++++.+...++.++...+.         +.+.+.++..+.++|.|+.=+.......|.+++++   |.+...+++..
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            567778888888888854431         23578888899999999999999999999999773   33344444433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3626|consensus

Probab=89.72  E-value=0.5  Score=37.06  Aligned_cols=62  Identities=19%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHH-HHHHHHHHhhHHHHhhhc
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMP-LSALFGGMAGGPLIESLG   72 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g   72 (144)
                      ....++..........+.+++|+|+|+  +++.+...+..+..... .+..+|..++|++..|+.
T Consensus       395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~--Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  395 MLVVLASVIESLAITGYITFLPKYLET--QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhHHHHHH--HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence            455666777778888899999999995  89999998888775544 455688888999999874

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.45  E-value=1.2  Score=32.89  Aligned_cols=103  Identities=15%  Similarity=0.050  Sum_probs=71.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH----------hchHHHHHHHHHHhhhh
Q psy6141          41 PTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL----------ANGVPMILAGRCVAGFC  110 (144)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~  110 (144)
                      .++...+....+..++.+++.....+...+..-|+.+....+..++..+....          .++.+..+.--.+..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            78888888888888888999999888888888888887777666554443211          11222223334555555


Q ss_pred             hhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141         111 VGIASLALPVYLGETVQPEVRGTLGLLPTFLGN  143 (144)
Q Consensus       111 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  143 (144)
                      .+...-+.....+|+-|+...|+..++...+.|
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~N  364 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSN  364 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            566666677788999999999988877665544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4332|consensus

Probab=89.12  E-value=6.2  Score=27.86  Aligned_cols=119  Identities=17%  Similarity=0.178  Sum_probs=70.9

Q ss_pred             HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchh--hHhhhchHHHHHHHHHH
Q psy6141          15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRT--TILSTGLPFIVSFLLIA   92 (144)
Q Consensus        15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~--~~~~~~~~~~~~~~~~~   92 (144)
                      ....+..+..+..+.|...-+  +-+   .--|++.+.+....++|+-+..++..|-.+|.  .+.+.....++...+..
T Consensus       258 sLFE~smytFVFLWTPaLspn--~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpi  332 (454)
T KOG4332|consen  258 SLFEGSMYTFVFLWTPALSPN--DEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPI  332 (454)
T ss_pred             HHHhhhhheeeeeecccCCCC--ccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence            344444444455555654321  111   22478888888888888888888877765443  12222222222222111


Q ss_pred             --H--hc---hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141          93 --L--AN---GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLP  138 (144)
Q Consensus        93 --~--~~---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  138 (144)
                        .  ++   ++..-+++..+.-.+.|..+|.....=++..|++.|...+.+.
T Consensus       333 lt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfF  385 (454)
T KOG4332|consen  333 LTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFF  385 (454)
T ss_pred             HHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence              1  11   2333455666677888899998888889999999999877653

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=89.02  E-value=4.4  Score=29.78  Aligned_cols=82  Identities=16%  Similarity=0.096  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhcc
Q psy6141          47 SWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETV  126 (144)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~  126 (144)
                      +.+..+-.+-.++..+...++.+|+..+.-......+..++.+..+++++.+.-+++-.+.+++.|........+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            445556666777888889999999987777777788888898888898999888888888888888776655554 4455


Q ss_pred             Ccc
Q psy6141         127 QPE  129 (144)
Q Consensus       127 ~~~  129 (144)
                      ++.
T Consensus       141 ~~~  143 (402)
T PF02487_consen  141 GKS  143 (402)
T ss_pred             Ccc
Confidence            543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0637|consensus

Probab=87.44  E-value=3.6  Score=30.78  Aligned_cols=77  Identities=16%  Similarity=-0.007  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHh
Q psy6141          47 SWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG  123 (144)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~  123 (144)
                      .+-..+..+...+.+....++.||+|-|+.++.+...+.++.......++.+....-+...|+-.+.........++
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~  411 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALA  411 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHH
Confidence            44456677777888899999999999888877777767777666677777777777777777555544444443333

>KOG3810|consensus

Probab=84.64  E-value=3.6  Score=29.89  Aligned_cols=95  Identities=14%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh--hchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhh
Q psy6141          47 SWIGSLMPLSALFGGMAGGPLIESLGRRTTILS--TGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGE  124 (144)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~  124 (144)
                      |.+-....+...++.+..|.+--++.|..-+++  +....+-..+++..++++|...++.++...-.....++...-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            555666777888899999999888877644443  333333344555667889988888877777766666777777777


Q ss_pred             ccCcchhhhhchhhhhh
Q psy6141         125 TVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       125 ~~~~~~r~~~~~~~~~~  141 (144)
                      -..++.-|...|++.+.
T Consensus       354 nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTFV  370 (433)
T ss_pred             hhhhhhheeeeehHHHH
Confidence            77777778888776654

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=84.61  E-value=0.38  Score=33.68  Aligned_cols=94  Identities=22%  Similarity=0.203  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhh--hchHHHHHHHHHHHh----------chHHHHHHHHHHhhhhhhhh
Q psy6141          48 WIGSLMPLSALFGGMAGGPLIESL-GRRTTILS--TGLPFIVSFLLIALA----------NGVPMILAGRCVAGFCVGIA  114 (144)
Q Consensus        48 ~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~g~~  114 (144)
                      .....++++..+|....++..-+. .+|+....  .-++++...+.+...          ++-+..++..++.|+.+|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            346678999999998877643221 23443332  122222222222111          23345566678899999999


Q ss_pred             hhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         115 SLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       115 ~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .+....+..+..++++|..+..+...+
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~  292 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFF  292 (309)
T ss_dssp             -HHHH----------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHH
Confidence            999999999999999988777665543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=83.87  E-value=3  Score=31.56  Aligned_cols=68  Identities=15%  Similarity=0.191  Sum_probs=42.3

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCC--CCCCcchhHHHHH---HHHHHHHHHHHhhHHHHhhhcchhhHhh
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSR--VSPTEEEASWIGS---LMPLSALFGGMAGGPLIESLGRRTTILS   79 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~i~~~~~g~l~d~~g~r~~~~~   79 (144)
                      ..+.+.+++.|...+.....+|.+++   +  .+.+.++.+....   .+++=.+-+.++=.....|+||||.-++
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~---~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWii   75 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQ---SMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWII   75 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhc---cccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhh
Confidence            34567778888888777667888887   5  5667766654322   2333223333333455557999998664

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=82.07  E-value=5.5  Score=25.05  Aligned_cols=72  Identities=17%  Similarity=0.201  Sum_probs=40.0

Q ss_pred             HHHhhhcchhhHhhhchHHHHHHHHHHH-----------hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhh
Q psy6141          66 PLIESLGRRTTILSTGLPFIVSFLLIAL-----------ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTL  134 (144)
Q Consensus        66 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~  134 (144)
                      .++||+-||..+.. .+..+.+...+..           .+++..++....+.|.+.   ..+.+..++...++++.|..
T Consensus        56 ~Vs~RM~rRm~~~~-GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSl  131 (153)
T PF11947_consen   56 VVSNRMLRRMAVFV-GIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSL  131 (153)
T ss_pred             HHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCc
Confidence            46777766555443 3333333332221           123444555555555553   33556667777888888988


Q ss_pred             chhhhhh
Q psy6141         135 GLLPTFL  141 (144)
Q Consensus       135 ~~~~~~~  141 (144)
                      .|+..+-
T Consensus       132 lG~~e~~  138 (153)
T PF11947_consen  132 LGWEEFK  138 (153)
T ss_pred             ccHHHHH
Confidence            8876543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 27/152 (17%)
Query: 8   SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPL---SALFGGMAG 64
           +L  +LG ++ G+ +A  S  + S+N +   V+P     S   SL+     SAL G + G
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTV--FVAPQNLSESAANSLLGFCVASALIGCIIG 71
Query: 65  GPL----IESLGRRTTILSTGLPFIVS----------FLLIALANGVPMILAG------- 103
           G L        GRR ++    + F +S          F  I   N VP+ LAG       
Sbjct: 72  GALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131
Query: 104 -RCVAGFCVGIASLALPVYLGETVQPEVRGTL 134
            R + G  VG+AS+  P+Y+ E     +RG L
Sbjct: 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.85
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.81
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.78
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.72
2xut_A	524	Proton/peptide symporter family protein; transport	99.68
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.41
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.31
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.29
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.22
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.2
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.18
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.97
2xut_A	524	Proton/peptide symporter family protein; transport	98.51

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.85  E-value=3.6e-21  Score=138.23  Aligned_cols=136  Identities=26%  Similarity=0.423  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCC---CC--CCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhh
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMG---SR--VSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILST   80 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~   80 (144)
                      ...+..+++.+.++|+...++..+|.+.+..   ++  .+.++.+.+++.+.+.+|.+++++++|+++||+|||++++++
T Consensus        12 ~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~   91 (491)
T 4gc0_A           12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA   91 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3445556778899999998888887765520   01  122345678899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHH------------------HhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          81 GLPFIVSFLLIA------------------LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        81 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .++..++.+.++                  .++|++.++++|+++|++.|...+..+.+++|..|+++|++..++.+..
T Consensus        92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~  170 (491)
T 4gc0_A           92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA  170 (491)
T ss_dssp             HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence            999999999887                  4789999999999999999999999999999999999999988877654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.84  E-value=1e-20  Score=134.00  Aligned_cols=137  Identities=14%  Similarity=0.103  Sum_probs=124.9

Q ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141           3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~   82 (144)
                      ++++....++...+..++......+..|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+.++.+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~   99 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF   99 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence            44566677777788888888888888999888   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          83 PFIVSFLLI---ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        83 ~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      +..++.+..   ..+++++.+++.|++.|++.+...+....+++|++|+|+|+++.++.+...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  162 (438)
T 3o7q_A          100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN  162 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence            999999988   788999999999999999999999999999999999999999888876653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.81  E-value=1.4e-19  Score=128.50  Aligned_cols=135  Identities=10%  Similarity=0.058  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      ++..........+..++......+..|.+.+   ++ .++++.+++.+...++..++.+++|+++||+|||+.++.+.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            3556667777778888888888888999888   78 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          84 FIVSFLLIAL----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        84 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..++.+...+    +++++.+++.|++.|++.+...+...++++|++|+++|+++.++.+...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  164 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH  164 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH
Confidence            9999999999    9999999999999999999999999999999999999999999876543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.78  E-value=4.8e-19  Score=123.42  Aligned_cols=131  Identities=17%  Similarity=0.196  Sum_probs=119.1

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF   88 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   88 (144)
                      ..++...+..++......+..|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.....++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            34556667777777888888998887   899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .....+++++.+++.|++.|++.+...+....++.|++|+|+|+++.++.+...
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGI  133 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988876543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.72  E-value=1.1e-17  Score=120.12  Aligned_cols=135  Identities=14%  Similarity=0.157  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhhhhhhhhcccccccccccC---CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhch
Q psy6141           7 ASLTVSLGSMIVGFASAYTSPAIPSMNQM---GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGL   82 (144)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~   82 (144)
                      ..+......+...+......+.+|.+.++   .++++.++++.+++.+...++..+++++.|+++|| +|||+.+..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~   93 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV   93 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            34445555555555555555566666552   12389999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhh
Q psy6141          83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFL  141 (144)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~  141 (144)
                      +..++.+.+.++++++.+.+.|++.|++.+...+....+++|++|+++  |+.+.++.+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  154 (491)
T 4aps_A           94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFG  154 (491)
T ss_dssp             HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHH
Confidence            999999999999999999999999999999999999999999999988  66666655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.68  E-value=8e-17  Score=116.62  Aligned_cols=126  Identities=13%  Similarity=0.122  Sum_probs=107.3

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCC------CCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhch
Q psy6141          10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVS------PTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGL   82 (144)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~~   82 (144)
                      .+.+..+...+......+.+|.+.++  +++      .++.+.+++.+...++..++.++.|+++||+ |||+.+..+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~   93 (524)
T 2xut_A           16 YIIASEACERFSFYGMRNILTPFLMT--ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL   93 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            34445555555555555666666542  677      8999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141          83 PFIVSFLLIALAN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLL  137 (144)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~  137 (144)
                      +..++.+...+++ +++.+++.|++.|++.+...+...++++|.+|+++|++..+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  149 (524)
T 2xut_A           94 IYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA  149 (524)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence            9999999999988 999999999999999999999999999999999999876555

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.41  E-value=1.5e-12  Score=92.24  Aligned_cols=133  Identities=12%  Similarity=0.114  Sum_probs=105.7

Q ss_pred             HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhHhhhchHHH
Q psy6141           8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTILSTGLPFI   85 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~~~~~~~~~   85 (144)
                      .+...+..+...........+.|.+.++  .++.++.+.++..+...++.+++.++.|++.||+  |||+.+..+.....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            3444555555555556666778888872  4899999999999999999999999999999999  99998887766665


Q ss_pred             -HHHHHHHHh--chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          86 -VSFLLIALA--NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        86 -~~~~~~~~~--~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                       ++.....+.  .+.+...+..++.|++.+...+....+..|.+|+++|+++.++.+...
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  391 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  391 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence             555555444  367777778888899888888888899999999999999999887653

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.31  E-value=1.7e-12  Score=91.86  Aligned_cols=125  Identities=18%  Similarity=0.048  Sum_probs=78.5

Q ss_pred             HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH
Q psy6141          11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL   90 (144)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   90 (144)
                      .....+..........+.+|.+.++  ++|.++++.+++.+...++..++++++|+++||+|||+.++.+.....+....
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~   89 (417)
T 2cfq_A           12 FGLFFFFYFFIMGAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP   89 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3333444444455667788888762  68999999999999999999999999999999999999998776655442211


Q ss_pred             H---HHhchH-HHHHHHHHHhhhhhhhhhhhHHHHHhhccCc--chhhhhchh
Q psy6141          91 I---ALANGV-PMILAGRCVAGFCVGIASLALPVYLGETVQP--EVRGTLGLL  137 (144)
Q Consensus        91 ~---~~~~~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~  137 (144)
                      .   .+.+.. ......+.+.+++.+...+.......++.++  ++|+...+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  142 (417)
T 2cfq_A           90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR  142 (417)
T ss_dssp             HHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHH
Confidence            1   122211 1133445565655554444333344444433  334443333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.29  E-value=2.1e-11  Score=86.15  Aligned_cols=123  Identities=12%  Similarity=-0.017  Sum_probs=97.3

Q ss_pred             HHHhhhhhhhhccccccccc-ccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141          13 LGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI   91 (144)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   91 (144)
                      +..+...........+.|.+ .++  .++.++.+.+...+...++..++.++.|++.||+|||+.+..+.+...++.+..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  342 (438)
T 3o7q_A          265 LAQFCYVGAQTACWSYLIRYAVEE--IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS  342 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc--cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            33344444445555667777 662  568999999999999999999999999999999999999999988888888877


Q ss_pred             HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141          92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      .+.++.+.... ..+.|++.+...+....+..|.+|++ |+.+.++..
T Consensus       343 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  388 (438)
T 3o7q_A          343 AFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV  388 (438)
T ss_dssp             HHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred             HHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH
Confidence            77777665444 47888888888899999999999976 777666544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.22  E-value=1.2e-11  Score=88.90  Aligned_cols=127  Identities=13%  Similarity=0.017  Sum_probs=91.7

Q ss_pred             HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh-----hhchHHHHHH
Q psy6141          14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL-----STGLPFIVSF   88 (144)
Q Consensus        14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~-----~~~~~~~~~~   88 (144)
                      ................|.+.++  ..+.+..+.+.......++..++.++.+++.||+|||+...     .+.++..++.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~  368 (491)
T 4aps_A          291 AAVLFWAIEEQGSVVLATFAAE--RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSF  368 (491)
T ss_dssp             HHHHHHHHHGGGGTHHHHHHHH--SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHH--HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Confidence            3333334444455556666652  45555567778888889999999999999999999987655     5555655555


Q ss_pred             HHHHHhc---------hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          89 LLIALAN---------GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        89 ~~~~~~~---------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      .......         +.+...+..++.|++.+...+....+..|.+|+++|+++.++.+...
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  431 (491)
T 4aps_A          369 LLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSS  431 (491)
T ss_dssp             TTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            5544432         56677777888999998888899999999999999999999876543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.20  E-value=2.6e-11  Score=85.83  Aligned_cols=96  Identities=13%  Similarity=0.112  Sum_probs=77.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy6141          43 EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYL  122 (144)
Q Consensus        43 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~  122 (144)
                      ..+.+...+...++..++.++.+++.||+|||+.+..+....++......+.++.+.+.+...+.+++.+...+....+.
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44557777778888889999999999999999998888777777766666667777777777777777766667778899


Q ss_pred             hhccCcchhhhhchhh
Q psy6141         123 GETVQPEVRGTLGLLP  138 (144)
Q Consensus       123 ~~~~~~~~r~~~~~~~  138 (144)
                      +|.+|++.|+++.++.
T Consensus       338 ~~~~p~~~~g~~~g~~  353 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVC  353 (417)
T ss_dssp             HHHSCHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHH
Confidence            9999999999987763

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.18  E-value=1.7e-10  Score=82.71  Aligned_cols=115  Identities=11%  Similarity=0.030  Sum_probs=79.2

Q ss_pred             cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh----chHHH
Q psy6141          24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA----NGVPM   99 (144)
Q Consensus        24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~   99 (144)
                      ....+.|.+.+   +.+.+............+...++.++.+++.||+|||+.++.+.....++.+.....    .+.+.
T Consensus       295 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  371 (491)
T 4gc0_A          295 VVLYYAPEVFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV  371 (491)
T ss_dssp             HHHHHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHhcchHHHH---hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHH
Confidence            33444566655   566666677777778888999999999999999999999998888777776655432    11222


Q ss_pred             HHHHH-HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141         100 ILAGR-CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus       100 ~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      ..+.. +..........+..+.+.+|.+|++.|+++.++.+..
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~  414 (491)
T 4gc0_A          372 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA  414 (491)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence            22222 2222222233467788999999999999999887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.97  E-value=1.2e-10  Score=80.86  Aligned_cols=129  Identities=15%  Similarity=-0.024  Sum_probs=91.6

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH-HHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP-FIVS   87 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~-~~~~   87 (144)
                      ....+..+.............|.+.++  +.+.++.+.+...+...++..++.++.+++.||.+++..  .+... ...+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~  277 (375)
T 2gfp_A          202 NCYLLMLIGGLAGIAAFEACSGVLMGA--VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAG  277 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSCSSHH--HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            333444444444555556677877761  478888899999999999999999999999999987322  22222 2222


Q ss_pred             HH--HHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          88 FL--LIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        88 ~~--~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..  ....  .++.+.+.+...+.|++.+...+....+..|..| ++|+++.++.+...
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~  335 (375)
T 2gfp_A          278 LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQ  335 (375)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHH
Confidence            11  1122  2366667777888999999999999999999998 89999999877543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.51  E-value=7.1e-08  Score=69.79  Aligned_cols=98  Identities=12%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHH----hhhcch----hhHhhhchHHHHHHHHHHHh---------chHHHHHHHHHHh
Q psy6141          45 EASWIGSLMPLSALFGGMAGGPLI----ESLGRR----TTILSTGLPFIVSFLLIALA---------NGVPMILAGRCVA  107 (144)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~g~l~----d~~g~r----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  107 (144)
                      ..+.......++..+..++.+++.    ||.|+|    +.+..+.++..++.+.....         .+.+.+.+..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666777777777777777764    555432    44556666666666555442         3566677788899


Q ss_pred             hhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141         108 GFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus       108 g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      |++.+...+....+..|..|+++|+++.++.+...
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  450 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV  450 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHH
Confidence            99999999999999999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	8e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 8e-04
 Identities = 14/128 (10%), Positives = 40/128 (31%), Gaps = 8/128 (6%)

Query: 9   LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLI 68
           L +  G           + A+P + + G     +  +  +  S + ++  F     G + 
Sbjct: 28  LGIFFGYAAYYLVRKNFALAMPYLVEQGF----SRGDLGFALSGISIAYGFSKFIMGSVS 83

Query: 69  ESLGRRTTILSTGLPFIVSFLLI----ALANGVPMILAGRCVAGFCVGIASLALPVYLGE 124
           +    R  + +  +      L +       + + ++     + G+  G+        +  
Sbjct: 84  DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143

Query: 125 TVQPEVRG 132
               + RG
Sbjct: 144 WWSQKERG 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.79
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.37
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.31
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.17

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.1e-19  Score=126.76  Aligned_cols=135  Identities=10%  Similarity=0.057  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141           4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~   83 (144)
                      +|.....+.++.+....+...+....|.+ +   |.+.|+++.+++.+...++..+++++.|+++||+|||+.+..+.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~---~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYL-V---EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHT-T---SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            35555555555666666666666666765 3   5799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141          84 FIVSFLLIALA----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG  142 (144)
Q Consensus        84 ~~~~~~~~~~~----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  142 (144)
                      ..++.+...+.    ++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  161 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH  161 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccccccccc
Confidence            99888877664    477889999999999999999999999999999999999998876543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=5.4e-13  Score=90.85  Aligned_cols=119  Identities=19%  Similarity=0.095  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHH
Q psy6141           6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFI   85 (144)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~   85 (144)
                      +..+.+....+...+......+.+|.+.++  ++|.|+++.+++.+...++..+++++.|+++||+||||.++.+.....
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~--~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            344455566666666667777888887652  689999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHhchHHH----HHHHHHHhhhhhhhhhhhHHHHHhhcc
Q psy6141          86 VSFLLIALANGVPM----ILAGRCVAGFCVGIASLALPVYLGETV  126 (144)
Q Consensus        86 ~~~~~~~~~~~~~~----~~~~~~~~g~~~g~~~~~~~~~~~~~~  126 (144)
                      ++........+...    ..+.+.+.+...+...........+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (417)
T d1pv7a_          85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFI  129 (417)
T ss_dssp             HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccc
Confidence            87777776554443    334455555555544444444433333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=4.9e-12  Score=85.99  Aligned_cols=102  Identities=12%  Similarity=0.083  Sum_probs=91.4

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141          38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA  117 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  117 (144)
                      +.+.+....+.......++..++..+.+++.||.|+|+.+..+.....++.....+.++.+...+..++.|++.+...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  332 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG  332 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence            44455667778888889999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             HHHHHhhccCcchhhhhchhhh
Q psy6141         118 LPVYLGETVQPEVRGTLGLLPT  139 (144)
Q Consensus       118 ~~~~~~~~~~~~~r~~~~~~~~  139 (144)
                      ...+++|.+|+|+|++..++..
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~  354 (417)
T d1pv7a_         333 CFKYITSQFEVRFSATIYLVCF  354 (417)
T ss_dssp             HHHHHHHHSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHCCHhHHHHHHHHHH
Confidence            9999999999999999888643

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.8e-10  Score=79.57  Aligned_cols=131  Identities=11%  Similarity=0.054  Sum_probs=94.7

Q ss_pred             HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141           9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF   88 (144)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   88 (144)
                      +......+.............|.+.++  ..+.+..+.+.......++..++.++.|++.||.+||+.............
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  329 (447)
T d1pw4a_         252 WYIAIANVFVYLLRYGILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT  329 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhcchhhhhhhccc--ccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHH
Confidence            334444444444445555567777662  678899999999999999999999999999999998765443333322222


Q ss_pred             HHHH-H----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141          89 LLIA-L----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL  141 (144)
Q Consensus        89 ~~~~-~----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  141 (144)
                      .... .    ..+.+...+..++.|++.+...+....+..|.+|+++|+++.++.+..
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  387 (447)
T d1pw4a_         330 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  387 (447)
T ss_dssp             HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            2221 1    346677777778888888888888899999999999999999886654