Psyllid ID: psy6163

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIGIKC
cccccccccccccEEEEcccccccEEEEEccccccEEEEEEEEccccccccccccccccEEEEEEEcccccccccEEcEEEEEEcccEEcccccEEEEcccEEEEEccccccccEEEEccHHHHHHHccccEEEEEc
ccccccccccccEEEEcccEEcccEEEEcEcccEEEEEEEEEcccccccccccEEccccEEEEEEEEEcccccccEEEEEEEEccccEEcccccEEEEcccEEEEEcccccEccccEcccEcHHHccccHcHHHccc
mskrgrggsagaKFRISlalpvgavincadntgakNLFVIAVQGVKgrlnrlpaagsgdMFVATVKKgkpelrkkvmpavvirqrkpfrrrdgvfiyfednagvivnnkgemkgsaitgpvakenaqicghgigikc
mskrgrggsagakFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNrlpaagsgdmfVATVkkgkpelrkkvmpavvirqrkpfrrrdgvfiyfednagvivnNKGEMKGSAITgpvakenaqicghgigikc
MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIGIKC
************KFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIG***
***************ISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIGIKC
***********AKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIGIKC
**********GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIGIKC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIGIKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query137 2.2.26 [Sep-21-2011]
Q9GNE2140 60S ribosomal protein L23 N/A N/A 0.941 0.921 0.906 1e-61
P48159140 60S ribosomal protein L23 yes N/A 0.941 0.921 0.899 2e-61
P62832140 60S ribosomal protein L23 yes N/A 0.941 0.921 0.852 1e-58
P62831140 60S ribosomal protein L23 yes N/A 0.941 0.921 0.852 1e-58
P62830140 60S ribosomal protein L23 yes N/A 0.941 0.921 0.852 1e-58
Q90YU5140 60S ribosomal protein L23 N/A N/A 0.941 0.921 0.852 1e-58
P62829140 60S ribosomal protein L23 yes N/A 0.941 0.921 0.852 1e-58
Q3T057140 60S ribosomal protein L23 yes N/A 0.941 0.921 0.852 1e-58
Q6PC14140 60S ribosomal protein L23 yes N/A 0.941 0.921 0.844 2e-58
Q5REU2140 60S ribosomal protein L23 yes N/A 0.941 0.921 0.844 3e-58
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1 Back     alignment and function desciption
 Score =  234 bits (598), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/129 (90%), Positives = 122/129 (94%)

Query: 1   MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDM 60
           MSKRGRGGSAG KFRISL LPVGAVINCADNTGAKNL+VIAV G++GRLNRLPAAG GDM
Sbjct: 1   MSKRGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60

Query: 61  FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
           FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61  FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 VAKENAQIC 129
           VAKE A + 
Sbjct: 121 VAKECADLW 129

Aedes aegypti (taxid: 7159)
>sp|P48159|RL23_DROME 60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=2 SV=2 Back     alignment and function description
>sp|P62832|RL23_RAT 60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1 Back     alignment and function description
>sp|P62831|RL23_PIG 60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1 Back     alignment and function description
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=1 SV=1 Back     alignment and function description
>sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2 Back     alignment and function description
>sp|P62829|RL23_HUMAN 60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1 Back     alignment and function description
>sp|Q3T057|RL23_BOVIN 60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2 Back     alignment and function description
>sp|Q6PC14|RL23_DANRE 60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1 Back     alignment and function description
>sp|Q5REU2|RL23_PONAB 60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
110671520140 putative ribosomal protein L17/23 [Diaph 0.941 0.921 0.968 2e-63
242019454140 60S ribosomal protein L23, putative [Ped 0.941 0.921 0.937 5e-62
112984274140 ribosomal protein L23 [Bombyx mori] gi|1 0.941 0.921 0.937 1e-61
389608303140 ribosomal protein L23 [Papilio xuthus] g 0.941 0.921 0.930 2e-61
332375604140 unknown [Dendroctonus ponderosae] 0.941 0.921 0.930 2e-61
66558956140 PREDICTED: 60S ribosomal protein L23 [Ap 0.941 0.921 0.930 2e-61
340724772140 PREDICTED: 60S ribosomal protein L23-lik 0.941 0.921 0.922 3e-61
121543837140 putative 60S ribosomal protein L23 [Maco 0.934 0.914 0.945 4e-61
307170578140 60S ribosomal protein L23 [Camponotus fl 0.941 0.921 0.922 6e-61
240849037140 ribosomal protein L23-like [Acyrthosipho 0.941 0.921 0.922 8e-61
>gi|110671520|gb|ABG82011.1| putative ribosomal protein L17/23 [Diaphorina citri] Back     alignment and taxonomy information
 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/129 (96%), Positives = 126/129 (97%)

Query: 1   MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDM 60
           MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDM
Sbjct: 1   MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDM 60

Query: 61  FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
           FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61  FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 VAKENAQIC 129
           VAKE A + 
Sbjct: 121 VAKECADLW 129

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242019454|ref|XP_002430176.1| 60S ribosomal protein L23, putative [Pediculus humanus corporis] gi|212515267|gb|EEB17438.1| 60S ribosomal protein L23, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|112984274|ref|NP_001037227.1| ribosomal protein L23 [Bombyx mori] gi|15081322|gb|AAK83857.1|AF395586_1 ribosomal protein L17/23 [Spodoptera frugiperda] gi|49532860|dbj|BAD26665.1| Ribosomal protein L17/23 [Plutella xylostella] gi|54609237|gb|AAV34834.1| ribosomal protein L23 [Bombyx mori] gi|268306378|gb|ACY95310.1| ribosomal protein L23 [Manduca sexta] gi|315115429|gb|ADT80687.1| ribosomal protein L23 [Euphydryas aurinia] gi|342356417|gb|AEL28867.1| ribosomal protein L23 [Heliconius melpomene cythera] gi|357620607|gb|EHJ72748.1| ribosomal protein L23 [Danaus plexippus] Back     alignment and taxonomy information
>gi|389608303|dbj|BAM17763.1| ribosomal protein L23 [Papilio xuthus] gi|389610691|dbj|BAM18957.1| ribosomal protein L23 [Papilio polytes] Back     alignment and taxonomy information
>gi|332375604|gb|AEE62943.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|66558956|ref|XP_392812.2| PREDICTED: 60S ribosomal protein L23 [Apis mellifera] gi|156545547|ref|XP_001605069.1| PREDICTED: 60S ribosomal protein L23-like [Nasonia vitripennis] gi|380028209|ref|XP_003697800.1| PREDICTED: 60S ribosomal protein L23-like [Apis florea] gi|383854692|ref|XP_003702854.1| PREDICTED: 60S ribosomal protein L23-like [Megachile rotundata] gi|62083503|gb|AAX62476.1| ribosomal protein L23 [Lysiphlebus testaceipes] gi|90819996|gb|ABD98755.1| putative ribosomal protein L17/23 [Graphocephala atropunctata] Back     alignment and taxonomy information
>gi|340724772|ref|XP_003400755.1| PREDICTED: 60S ribosomal protein L23-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|121543837|gb|ABM55583.1| putative 60S ribosomal protein L23 [Maconellicoccus hirsutus] Back     alignment and taxonomy information
>gi|307170578|gb|EFN62772.1| 60S ribosomal protein L23 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|240849037|ref|NP_001155385.1| ribosomal protein L23-like [Acyrthosiphon pisum] gi|239799377|dbj|BAH70612.1| ACYPI000455 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
FB|FBgn0010078140 RpL23 "Ribosomal protein L23" 0.934 0.914 0.906 5.1e-58
UNIPROTKB|Q3T057140 RPL23 "60S ribosomal protein L 0.934 0.914 0.859 2.9e-55
UNIPROTKB|F2Z4P3140 RPL23 "60S ribosomal protein L 0.934 0.914 0.859 2.9e-55
UNIPROTKB|P62829140 RPL23 "60S ribosomal protein L 0.934 0.914 0.859 2.9e-55
UNIPROTKB|P62831140 RPL23 "60S ribosomal protein L 0.934 0.914 0.859 2.9e-55
MGI|MGI:1929455140 Rpl23 "ribosomal protein L23" 0.934 0.914 0.859 2.9e-55
RGD|62067140 Rpl23 "ribosomal protein L23" 0.934 0.914 0.859 2.9e-55
ZFIN|ZDB-GENE-030131-8756140 rpl23 "ribosomal protein L23" 0.934 0.914 0.851 6.1e-55
UNIPROTKB|J9P897140 J9P897 "Uncharacterized protei 0.934 0.914 0.851 7.8e-55
UNIPROTKB|Q9XSU3140 RPL23 "60S ribosomal protein L 0.934 0.914 0.843 3.4e-54
FB|FBgn0010078 RpL23 "Ribosomal protein L23" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 116/128 (90%), Positives = 122/128 (95%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDM 60
             MSKRGRGG+AG KFRISL LPVGAV+NCADNTGAKNL+VIAV G++GRLNRLPAAG GDM
Sbjct:     1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60

Query:    61 FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
             FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct:    61 FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120

Query:   121 VAKENAQI 128
             VAKE A +
Sbjct:   121 VAKECADL 128
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;NAS
GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS
GO:0006412 "translation" evidence=ISS;NAS
GO:0005840 "ribosome" evidence=NAS
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|Q3T057 RPL23 "60S ribosomal protein L23" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4P3 RPL23 "60S ribosomal protein L23" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62829 RPL23 "60S ribosomal protein L23" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62831 RPL23 "60S ribosomal protein L23" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1929455 Rpl23 "ribosomal protein L23" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|62067 Rpl23 "ribosomal protein L23" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8756 rpl23 "ribosomal protein L23" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9P897 J9P897 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XSU3 RPL23 "60S ribosomal protein L23" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A0RVY3RL14_CENSYNo assigned EC number0.53540.90510.8611yesN/A
Q3T057RL23_BOVINNo assigned EC number0.85270.94160.9214yesN/A
A8ACD2RL14_IGNH4No assigned EC number0.51720.84670.8467yesN/A
P62832RL23_RATNo assigned EC number0.85270.94160.9214yesN/A
P62831RL23_PIGNo assigned EC number0.85270.94160.9214yesN/A
P62830RL23_MOUSENo assigned EC number0.85270.94160.9214yesN/A
O26121RL14_METTHNo assigned EC number0.53980.82480.8560yesN/A
P14031RL14_METVANo assigned EC number0.55960.79560.8257yesN/A
A2BMC9RL14_HYPBUNo assigned EC number0.56770.86130.8550yesN/A
A9A9Q4RL14_METM6No assigned EC number0.56250.81750.8484yesN/A
Q6LXE3RL14_METMPNo assigned EC number0.57140.81750.8484yesN/A
A6VGZ5RL14_METM7No assigned EC number0.55350.81750.8484yesN/A
Q9YF82RL14_AERPENo assigned EC number0.48810.92700.9071yesN/A
Q07760RL23_TOBACNo assigned EC number0.79680.93430.9142N/AN/A
P0CX42RL23B_YEASTNo assigned EC number0.74590.89050.8905yesN/A
P0CX41RL23A_YEASTNo assigned EC number0.74590.89050.8905yesN/A
Q8U009RL14_PYRFUNo assigned EC number0.51560.92700.9007yesN/A
Q9HIR9RL14_THEACNo assigned EC number0.56630.82480.8560yesN/A
P48158RL23_CAEELNo assigned EC number0.83590.93430.9142yesN/A
P48159RL23_DROMENo assigned EC number0.89920.94160.9214yesN/A
Q9GNE2RL23_AEDAENo assigned EC number0.90690.94160.9214N/AN/A
P49690RL23_ARATHNo assigned EC number0.75780.93430.9142yesN/A
Q93140RL23_BRUMANo assigned EC number0.82940.94160.9214N/AN/A
Q94776RL23_TRYCRNo assigned EC number0.66930.89780.8723N/AN/A
Q9V1U6RL14_PYRABNo assigned EC number0.52340.92700.9007yesN/A
A4FWB1RL14_METM5No assigned EC number0.56250.81750.8484yesN/A
P0DJ53RL23_TETTSNo assigned EC number0.7120.91240.8865N/AN/A
Q97BW6RL14_THEVONo assigned EC number0.55830.85400.8863yesN/A
Q54G86RL23_DICDINo assigned EC number0.68330.86860.875yesN/A
P54037RL14_METJANo assigned EC number0.62380.79560.8257yesN/A
Q8TW20RL14_METKANo assigned EC number0.59630.79560.8195yesN/A
Q90YU5RL23_ICTPUNo assigned EC number0.85270.94160.9214N/AN/A
A3DNB7RL14_STAMFNo assigned EC number0.53540.92700.9071yesN/A
Q6L1B7RL14_PICTONo assigned EC number0.58330.78830.8181yesN/A
P62829RL23_HUMANNo assigned EC number0.85270.94160.9214yesN/A
Q9XEK8RL23_TORRUNo assigned EC number0.77510.93430.9208N/AN/A
Q8SRA7RL23_ENCCUNo assigned EC number0.53330.87590.8219yesN/A
O42867RL23_SCHPONo assigned EC number0.7040.91240.8992yesN/A
A6UQ54RL14_METVSNo assigned EC number0.55960.79560.8257yesN/A
Q12ZU1RL14_METBUNo assigned EC number0.52130.85400.8863yesN/A
O59427RL14_PYRHONo assigned EC number0.50780.92700.9007yesN/A
O24787RL14_HALSANo assigned EC number0.50.86130.8939yesN/A
B0R666RL14_HALS3No assigned EC number0.50.86130.8939yesN/A
Q2NFW7RL14_METSTNo assigned EC number0.50870.83210.8636yesN/A
Q6PC14RL23_DANRENo assigned EC number0.84490.94160.9214yesN/A
Q9XSU3RL23_CANFANo assigned EC number0.83720.94160.9214yesN/A
O28364RL14_ARCFUNo assigned EC number0.58920.81750.8484yesN/A
Q5REU2RL23_PONABNo assigned EC number0.84490.94160.9214yesN/A
A0B9W0RL14_METTPNo assigned EC number0.52990.85400.8863yesN/A
A6UWU8RL14_META3No assigned EC number0.58710.79560.8257yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
PTZ00054139 PTZ00054, PTZ00054, 60S ribosomal protein L23; Pro 2e-76
PRK08571132 PRK08571, rpl14p, 50S ribosomal protein L14P; Revi 3e-53
TIGR03673131 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P 2e-50
COG0093122 COG0093, RplN, Ribosomal protein L14 [Translation, 4e-41
pfam00238122 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L 2e-37
PRK05483122 PRK05483, rplN, 50S ribosomal protein L14; Validat 2e-23
CHL00057122 CHL00057, rpl14, ribosomal protein L14 2e-21
TIGR01067122 TIGR01067, rplN_bact, ribosomal protein L14, bacte 2e-19
>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional Back     alignment and domain information 
 Score =  223 bits (569), Expect = 2e-76
 Identities = 98/127 (77%), Positives = 113/127 (88%)

Query: 2   SKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMF 61
            KRGRGG  G KFR++L LPVGAV+NCADN+GAKNL++IAV+G+ GRLNRLP+A  GDM 
Sbjct: 1   MKRGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMV 60

Query: 62  VATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPV 121
           +ATVKKGKPELRKKV+ AV+IRQRK +RR+DGVFIYFEDNAGVIVN KGEMKGSAITGPV
Sbjct: 61  LATVKKGKPELRKKVLNAVIIRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPV 120

Query: 122 AKENAQI 128
           AKE A +
Sbjct: 121 AKECADL 127

Length = 139
>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed Back     alignment and domain information
>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P Back     alignment and domain information
>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e Back     alignment and domain information
>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated Back     alignment and domain information
>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14 Back     alignment and domain information
>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 137
PTZ00054139 60S ribosomal protein L23; Provisional 100.0
PRK08571132 rpl14p 50S ribosomal protein L14P; Reviewed 100.0
TIGR03673131 rpl14p_arch 50S ribosomal protein L14P. Part of th 100.0
COG0093122 RplN Ribosomal protein L14 [Translation, ribosomal 100.0
CHL00057122 rpl14 ribosomal protein L14 100.0
PRK05483122 rplN 50S ribosomal protein L14; Validated 100.0
TIGR01067122 rplN_bact ribosomal protein L14, bacterial/organel 100.0
PF00238122 Ribosomal_L14: Ribosomal protein L14p/L23e; InterP 100.0
PTZ00320188 ribosomal protein L14; Provisional 100.0
KOG0901|consensus145 100.0
KOG3441|consensus149 99.84
>PTZ00054 60S ribosomal protein L23; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.2e-52  Score=316.21  Aligned_cols=131  Identities=74%  Similarity=1.167  Sum_probs=122.1

Q ss_pred             CCCCCCCcccceeccCcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCCccceeeEEEEe
Q psy6163           4 RGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIR   83 (137)
Q Consensus         4 ~~~~~~~~~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVR   83 (137)
                      .+.|+..++++++++|||.+|+|+|+|||||++++||++++.++.++++++|++||+|+||||++.|..|+|+++|||||
T Consensus         3 ~~~~~~~~~~~~~~~mIq~~t~L~vaDNSGAk~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p~~kg~V~kAVIVR   82 (139)
T PTZ00054          3 RGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVIIR   82 (139)
T ss_pred             ccccCccccccccceeecCCCEEEEeeCCCccEEEEEEEeccCcCCccCcccccCCEEEEEEEECCCcccCCEeeEEEEE
Confidence            36677889999999999999999999999999999999997544455557899999999999999999999999999999


Q ss_pred             eecceecCCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcCcCcc
Q psy6163          84 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIG  134 (137)
Q Consensus        84 tKk~~~R~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p~~~~  134 (137)
                      ||++++|+||++++||||||||||++++|+|||||||||+||+++||+.+.
T Consensus        83 tKk~~rR~dGs~i~F~dNA~VLin~~~~p~GTRI~GpV~rEl~~~~~KI~S  133 (139)
T PTZ00054         83 QRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPKISS  133 (139)
T ss_pred             ECcceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeCchhHHHHhCccHhhc
Confidence            999999999999999999999999999999999999999999999998654

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed Back     alignment and domain information
>TIGR03673 rpl14p_arch 50S ribosomal protein L14P Back     alignment and domain information
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00057 rpl14 ribosomal protein L14 Back     alignment and domain information
>PRK05483 rplN 50S ribosomal protein L14; Validated Back     alignment and domain information
>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle Back     alignment and domain information
>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PTZ00320 ribosomal protein L14; Provisional Back     alignment and domain information
>KOG0901|consensus Back     alignment and domain information
>KOG3441|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
2zkr_k140 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-59
3izr_M140 Localization Of The Large Subunit Ribosomal Protein 1e-55
1s1i_R137 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-49
3jyw_R131 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-48
2x7n_C132 Mechanism Of Eif6s Anti-Association Activity Length 1e-48
3zf7_W139 High-resolution Cryo-electron Microscopy Structure 6e-48
4a17_J141 T.Thermophila 60s Ribosomal Subunit In Complex With 8e-42
3j21_J141 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-29
1s72_K132 Refined Crystal Structure Of The Haloarcula Marismo 4e-29
1ffk_H132 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-28
2j01_O122 Structure Of The Thermus Thermophilus 70s Ribosome 3e-12
3bbo_M121 Homology Model For The Spinach Chloroplast 50s Subu 3e-12
2hgj_N122 Crystal Structure Of The 70s Thermus Thermophilus R 3e-12
1c04_D122 Identification Of Known Protein And Rna Structures 3e-12
1p85_I123 Real Space Refined Coordinates Of The 50s Subunit F 2e-10
3ofq_K122 Crystal Structure Of The E. Coli Ribosome Bound To 2e-10
2gya_I122 Structure Of The 50s Subunit Of A Pre-Translocation 2e-10
2wwq_K121 E.Coli 70s Ribosome Stalled During Translation Of T 2e-10
2j28_K121 Model Of E. Coli Srp Bound To 70s Rncs Length = 121 2e-10
1nkw_I134 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-10
1pnu_I132 Crystal Structure Of A Streptomycin Dependent Ribos 4e-10
>pdb|2ZKR|KK Chain k, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 140 Back     alignment and structure 
Iteration: 1

 Score =  224 bits (571), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 121/129 (93%)
Query: 1   MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDM 60
           MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+KGRLNRLPAAG GDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 61  FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
            +ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 121 VAKENAQIC 129
           VAKE A + 
Sbjct: 121 VAKECADLW 129
>pdb|3IZR|M Chain M, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 140 Back     alignment and structure
>pdb|1S1I|R Chain R, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 137 Back     alignment and structure
>pdb|3JYW|R Chain R, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 131 Back     alignment and structure
>pdb|2X7N|C Chain C, Mechanism Of Eif6s Anti-Association Activity Length = 132 Back     alignment and structure
>pdb|3ZF7|W Chain W, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 139 Back     alignment and structure
>pdb|4A17|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 141 Back     alignment and structure
>pdb|3J21|J Chain J, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 141 Back     alignment and structure
>pdb|1S72|K Chain K, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 132 Back     alignment and structure
>pdb|1FFK|H Chain H, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 132 Back     alignment and structure
>pdb|2J01|O Chain O, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 122 Back     alignment and structure
>pdb|3BBO|M Chain M, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 121 Back     alignment and structure
>pdb|2HGJ|N Chain N, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 122 Back     alignment and structure
>pdb|1C04|D Chain D, Identification Of Known Protein And Rna Structures In A 5 A Map Of The Large Ribosomal Subunit From Haloarcula Marismortui Length = 122 Back     alignment and structure
>pdb|1P85|I Chain I, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123 Back     alignment and structure
>pdb|3OFQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. Length = 122 Back     alignment and structure
>pdb|2GYA|I Chain I, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 122 Back     alignment and structure
>pdb|2WWQ|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2) Length = 121 Back     alignment and structure
>pdb|2J28|K Chain K, Model Of E. Coli Srp Bound To 70s Rncs Length = 121 Back     alignment and structure
>pdb|1NKW|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 134 Back     alignment and structure
>pdb|1PNU|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 132 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
3u5e_V137 L17A, YL32, 60S ribosomal protein L23-A; translati 3e-35
1vq8_K132 50S ribosomal protein L14P; ribosome 50S, protein- 1e-32
3bbo_M121 Ribosomal protein L14; large ribosomal subunit, sp 2e-25
1whi_A122 Ribosomal protein L14; rRNA-binding; 1.50A {Geobac 4e-25
3v2d_O122 50S ribosomal protein L14; ribosome associated inh 2e-24
3r8s_K122 50S ribosomal protein L14; protein biosynthesis, R 1e-23
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Length = 137 Back     alignment and structure
 Score =  117 bits (295), Expect = 3e-35
 Identities = 90/118 (76%), Positives = 103/118 (87%)

Query: 7   GGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVK 66
            G+ G KFRISL LPVGA++NCADN+GA+NL++IAV+G   RLNRLPAA  GDM +ATVK
Sbjct: 4   NGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVK 63

Query: 67  KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 124
           KGKPELRKKVMPA+V+RQ K +RRRDGVF+YFEDNAGVI N KGEMKGSAITGPV KE
Sbjct: 64  KGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 121
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Length = 132 Back     alignment and structure
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121 Back     alignment and structure
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122 Back     alignment and structure
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122 Back     alignment and structure
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ... Length = 122 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
3j21_J141 50S ribosomal protein L14P; archaea, archaeal, KIN 100.0
3u5e_V137 L17A, YL32, 60S ribosomal protein L23-A; translati 100.0
1vq8_K132 50S ribosomal protein L14P; ribosome 50S, protein- 100.0
3v2d_O122 50S ribosomal protein L14; ribosome associated inh 100.0
3bbo_M121 Ribosomal protein L14; large ribosomal subunit, sp 100.0
1whi_A122 Ribosomal protein L14; rRNA-binding; 1.50A {Geobac 100.0
3r8s_K122 50S ribosomal protein L14; protein biosynthesis, R 100.0
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
Probab=100.00  E-value=4.3e-58  Score=349.11  Aligned_cols=133  Identities=50%  Similarity=0.750  Sum_probs=120.2

Q ss_pred             CCCCCCCCCCc-ccceeccCcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCCccceeeE
Q psy6163           1 MSKRGRGGSAG-AKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPA   79 (137)
Q Consensus         1 ~~~~~~~~~~~-~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~kA   79 (137)
                      ||+||+||.++ +++++++|||.+|+|+|+|||||++++||+|+++++.++|+++|++||+|++|||++.|+.|+|+++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~kg~V~kA   80 (141)
T 3j21_J            1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRA   80 (141)
T ss_dssp             ---------CCCCCSBCCCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTTTTCEEEE
T ss_pred             CCccccCCccccccccccceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCCcCceEEE
Confidence            89999999998 89999999999999999999999999999999987777888899999999999999999999999999


Q ss_pred             EEEeeecceecCCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcCcCc
Q psy6163          80 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGI  133 (137)
Q Consensus        80 VIVRtKk~~~R~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p~~~  133 (137)
                      ||||||++++|+||++|+|||||+||||++++|+|||||||||+|||++||+.+
T Consensus        81 VIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~~~KI~  134 (141)
T 3j21_J           81 VIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIG  134 (141)
T ss_dssp             EEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHHCHHHH
T ss_pred             EEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhhchHHh
Confidence            999999999999999999999999999999999999999999999999998754
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Back     alignment and structure
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Back     alignment and structure
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Back     alignment and structure
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Back     alignment and structure
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 137
d1vqok1132 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon 6e-43
d2j01o1122 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus 7e-32
d2gyci1121 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric 9e-29
d1whia_122 b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stea 4e-28
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132 Back     information, alignment and structure

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  136 bits (343), Expect = 6e-43
 Identities = 56/114 (49%), Positives = 76/114 (66%)

Query: 11  GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKP 70
                ++  L  G++I CADNTGA+ L VI+V G  G  NRLP AG GD    +V KG P
Sbjct: 3   ALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP 62

Query: 71  ELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 124
           E+R++V+ AVV+RQRKP RR DG  + FEDNA VIV+   + +G+ + GP+A+E
Sbjct: 63  EMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIARE 116
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122 Back     information, alignment and structure
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
d1vqok1132 Ribosomal protein L14 {Archaeon Haloarcula marismo 100.0
d1whia_122 Ribosomal protein L14 {Bacillus stearothermophilus 100.0
d2j01o1122 Ribosomal protein L14 {Thermus thermophilus [TaxId 100.0
d2gyci1121 Ribosomal protein L14 {Escherichia coli [TaxId: 56 100.0
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.6e-51  Score=307.23  Aligned_cols=123  Identities=48%  Similarity=0.783  Sum_probs=117.9

Q ss_pred             cccceeccCcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCCccceeeEEEEeeecceec
Q psy6163          11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRR   90 (137)
Q Consensus        11 ~~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R   90 (137)
                      +....+++|||.+|+|+|+|||||+.++||+|++++++++++++|.+||+|+||||++.|+.|+++++|||||||++++|
T Consensus         3 ~~~~~~~~~Iq~~s~L~v~DNSGak~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~~k~~v~~AvIVrtkk~~~R   82 (132)
T d1vqok1           3 ALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRR   82 (132)
T ss_dssp             CCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSSCEEC
T ss_pred             cccccccccccccCEEEEeeCCCCceEEEEEEeccccccccccccccceEEEEEEeecCCCcccceEEEEEEEecCcEEC
Confidence            34568999999999999999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcCcCc
Q psy6163          91 RDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGI  133 (137)
Q Consensus        91 ~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p~~~  133 (137)
                      +||++++|||||+||||++++|+|||||||||+|||++||+.+
T Consensus        83 ~dG~~i~FddNa~VLi~~~~~p~GTRI~GpV~~Elr~k~~Ki~  125 (132)
T d1vqok1          83 PDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVA  125 (132)
T ss_dssp             TTSCEEEESSCEEEEECTTSCBSSSCBCSCBCHHHHHHSHHHH
T ss_pred             CCCCEEEcCCCEEEEECCCCCEeeeEEeccHhHHHHhhhhHHH
Confidence            9999999999999999999999999999999999999999754
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure