Psyllid ID: psy6240

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MVKTFTIHYHIIDGSENINIRGGTQFHIDDDNVILPVDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSVD
cccccHHccHHHHHHHHcccccccEEEEEccccEEEccHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHccccccc
ccHHHcccHHHHHHHHHcccccccEEEEcccEEEEEccHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccHHcHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHccccHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccc
MVKTFTIHYHiidgseninirggtqfhidddnvilpvdktEFITQVLTStgdkhvyktqlncTDKVVVefsspniakpfhvghfrGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELnikhtdleqsplDVLYKAYVKANElakinpdvqeqapLDVLYKAYVKAndlakinpdvqEQASNIFQQlecgkntlhtkDWLDFQQVTLNELRGTYERLGIHFSVD
MVKTFTIHYHIIDGSENINIRGGTQFHIDDDNVILPVDKTEFITQVLTstgdkhvyktqLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELakinpdvqeqAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRgtyerlgihfsvd
MVKTFTIHYHIIDGSENINIRGGTQFHIDDDNVILPVDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSVD
***TFTIHYHIIDGSENINIRGGTQFHIDDDNVILPVDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF***
MVKT*TIHYHIIDGSENINIRGGTQFHIDDDNVILPVDKTEFITQVLTST**********NCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKA***AKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV*
MVKTFTIHYHIIDGSENINIRGGTQFHIDDDNVILPVDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSVD
MVKTFTIHYHIIDGSENINIRGGTQFHIDDDNVILPVDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFS**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVKTFTIHYHIIDGSENINIRGGTQFHIDDDNVILPVDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q0P5H7 578 Probable arginine--tRNA l yes N/A 0.699 0.282 0.360 2e-26
Q5T160 578 Probable arginine--tRNA l yes N/A 0.699 0.282 0.350 5e-26
Q5REH3 578 Probable arginine--tRNA l yes N/A 0.699 0.282 0.350 6e-26
O74781 618 Probable arginine--tRNA l yes N/A 0.673 0.254 0.397 7e-26
Q3U186 578 Probable arginine--tRNA l yes N/A 0.699 0.282 0.355 5e-25
Q6GQJ7 580 Probable arginine--tRNA l N/A N/A 0.755 0.303 0.342 8e-25
P38714 643 Arginine--tRNA ligase, mi yes N/A 0.630 0.228 0.398 1e-23
Q558Z0 589 Probable arginine--tRNA l yes N/A 0.652 0.258 0.344 2e-23
Q05506 607 Arginine--tRNA ligase, cy no N/A 0.630 0.242 0.357 4e-23
Q8SRD8 563 Arginine--tRNA ligase OS= yes N/A 0.605 0.250 0.345 5e-23
>sp|Q0P5H7|SYRM_BOVIN Probable arginine--tRNA ligase, mitochondrial OS=Bos taurus GN=RARS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 103/194 (53%), Gaps = 31/194 (15%)

Query: 40  TEFITQVLTSTGDKHVYKTQLNC---TDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANL 96
           T+ + Q +   G K+  K++L       ++VVEFSSPN+AK FHVGH R T++GNF+ANL
Sbjct: 98  TKTVLQQVIEDGSKYGLKSELFSGLPKKRIVVEFSSPNVAKKFHVGHLRSTIIGNFIANL 157

Query: 97  SNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKIN 156
                + V  +NYLGDWG QFGLL  G +    +   L+ SPL  L++ YV+ N+ A   
Sbjct: 158 KEALGHQVTRINYLGDWGMQFGLLGTGFQLFGYEE-KLQSSPLQHLFEVYVQVNKEA--- 213

Query: 157 PDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTL 216
                             A+D      +V + A   FQ+LE G +      W  F+ +++
Sbjct: 214 ------------------ADD-----KNVAKSAHEFFQRLELG-DMQALALWQKFRDLSI 249

Query: 217 NELRGTYERLGIHF 230
           +E    Y+RLG+HF
Sbjct: 250 DEYMRIYQRLGVHF 263

Bos taurus (taxid: 9913)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9
>sp|Q5T160|SYRM_HUMAN Probable arginine--tRNA ligase, mitochondrial OS=Homo sapiens GN=RARS2 PE=1 SV=1 Back     alignment and function description
>sp|Q5REH3|SYRM_PONAB Probable arginine--tRNA ligase, mitochondrial OS=Pongo abelii GN=RARS2 PE=2 SV=1 Back     alignment and function description
>sp|O74781|SYRC_SCHPO Probable arginine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25B2.09c PE=2 SV=1 Back     alignment and function description
>sp|Q3U186|SYRM_MOUSE Probable arginine--tRNA ligase, mitochondrial OS=Mus musculus GN=Rars2 PE=2 SV=1 Back     alignment and function description
>sp|Q6GQJ7|SYRM_XENLA Probable arginine--tRNA ligase, mitochondrial OS=Xenopus laevis GN=rars2 PE=2 SV=1 Back     alignment and function description
>sp|P38714|SYRM_YEAST Arginine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSR1 PE=3 SV=3 Back     alignment and function description
>sp|Q558Z0|SYRC_DICDI Probable arginine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=argS1 PE=3 SV=1 Back     alignment and function description
>sp|Q05506|SYRC_YEAST Arginine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR341C PE=1 SV=1 Back     alignment and function description
>sp|Q8SRD8|SYR_ENCCU Arginine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU08_0550 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
195392491 571 GJ22551 [Drosophila virilis] gi|19415297 0.605 0.246 0.431 2e-34
125777988 572 GA10066 [Drosophila pseudoobscura pseudo 0.605 0.246 0.407 1e-33
195445587 575 GK12028 [Drosophila willistoni] gi|19416 0.605 0.245 0.431 2e-33
195157366 572 GL12462 [Drosophila persimilis] gi|19411 0.605 0.246 0.407 2e-33
340709866 516 PREDICTED: probable arginyl-tRNA synthet 0.592 0.267 0.436 4e-33
345494753 567 PREDICTED: probable arginyl-tRNA synthet 0.592 0.243 0.418 5e-33
194899366 572 GG14252 [Drosophila erecta] gi|190650934 0.708 0.288 0.385 8e-33
195498652 570 GE24948 [Drosophila yakuba] gi|194182716 0.742 0.303 0.363 1e-32
322792442 554 hypothetical protein SINV_15311 [Solenop 0.849 0.357 0.362 3e-32
357611205 364 putative arginyl-tRNA synthetase [Danaus 0.733 0.469 0.397 3e-32
>gi|195392491|ref|XP_002054891.1| GJ22551 [Drosophila virilis] gi|194152977|gb|EDW68411.1| GJ22551 [Drosophila virilis] Back     alignment and taxonomy information
 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 26/167 (15%)

Query: 64  DKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIG 123
           + VVVE+SSPNIAKPFHVGH R T++GN +ANL  +       LNYLGDWGTQFGLL +G
Sbjct: 113 EHVVVEYSSPNIAKPFHVGHLRSTIIGNVLANLHQHLGYRTTRLNYLGDWGTQFGLLALG 172

Query: 124 LKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINP 183
           ++  N+    +  +P++ LY AYV AN+                           A  +P
Sbjct: 173 VQLSNVHDAQMRAAPIETLYNAYVTANK--------------------------AAAADP 206

Query: 184 DVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
            + +QA  +F  LE GK+T  +K W  ++Q T+ EL G YERLG+HF
Sbjct: 207 QLAQQARELFSALEAGKDTTMSKQWEQYRQYTIEELTGVYERLGVHF 253

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|125777988|ref|XP_001359796.1| GA10066 [Drosophila pseudoobscura pseudoobscura] gi|54639546|gb|EAL28948.1| GA10066 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195445587|ref|XP_002070393.1| GK12028 [Drosophila willistoni] gi|194166478|gb|EDW81379.1| GK12028 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195157366|ref|XP_002019567.1| GL12462 [Drosophila persimilis] gi|194116158|gb|EDW38201.1| GL12462 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|340709866|ref|XP_003393521.1| PREDICTED: probable arginyl-tRNA synthetase, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345494753|ref|XP_001604101.2| PREDICTED: probable arginyl-tRNA synthetase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|194899366|ref|XP_001979231.1| GG14252 [Drosophila erecta] gi|190650934|gb|EDV48189.1| GG14252 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195498652|ref|XP_002096615.1| GE24948 [Drosophila yakuba] gi|194182716|gb|EDW96327.1| GE24948 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|322792442|gb|EFZ16426.1| hypothetical protein SINV_15311 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|357611205|gb|EHJ67368.1| putative arginyl-tRNA synthetase [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
FB|FBgn0037526 594 CG10092 [Drosophila melanogast 0.515 0.202 0.467 9e-27
CGD|CAL0004134 643 orf19.3341 [Candida albicans ( 0.699 0.253 0.366 1.8e-25
POMBASE|SPBC25B2.09c 618 mrs1 "mitochondrial and cytopl 0.669 0.252 0.406 3.4e-25
DICTYBASE|DDB_G0272867 589 argS1 "arginyl-tRNA synthetase 0.824 0.325 0.336 8e-25
ASPGD|ASPL0000001234 650 AN6368 [Emericella nidulans (t 0.686 0.246 0.364 7.7e-24
ZFIN|ZDB-GENE-040426-1244 597 rars2 "arginyl-tRNA synthetase 0.678 0.264 0.373 1e-23
UNIPROTKB|E2R9K6 578 RARS2 "Uncharacterized protein 0.527 0.212 0.440 3.1e-22
UNIPROTKB|F1S0G2 480 LOC100519344 "Uncharacterized 0.515 0.25 0.435 3.7e-22
UNIPROTKB|Q5T160 578 RARS2 "Probable arginine--tRNA 0.527 0.212 0.425 6.6e-22
UNIPROTKB|Q0P5H7 578 RARS2 "Probable arginine--tRNA 0.527 0.212 0.425 8.5e-22
FB|FBgn0037526 CG10092 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 308 (113.5 bits), Expect = 9.0e-27, P = 9.0e-27
 Identities = 57/122 (46%), Positives = 85/122 (69%)

Query:    42 FITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFA 101
             F+ Q+L  T +  ++ +     + +VVE+SSPNIAKPFHVGH R T++GN +ANL  +  
Sbjct:   115 FVEQLL-QTKEIALHPSPF-AAEHIVVEYSSPNIAKPFHVGHLRSTIIGNVLANLHEHLG 172

Query:   102 NNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQE 161
                  LNYLGDWGTQFGLL +G++ LN+   +++ SP++ LYK+YV AN+ A+  P++ +
Sbjct:   173 YRTTRLNYLGDWGTQFGLLVLGVQLLNVSDKEMQLSPIETLYKSYVAANKAAEQRPEIAQ 232

Query:   162 QA 163
             QA
Sbjct:   233 QA 234
GO:0004814 "arginine-tRNA ligase activity" evidence=ISS
GO:0006420 "arginyl-tRNA aminoacylation" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
CGD|CAL0004134 orf19.3341 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
POMBASE|SPBC25B2.09c mrs1 "mitochondrial and cytoplasmic arginine-tRNA ligase Rrs1/Mrs1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272867 argS1 "arginyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000001234 AN6368 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1244 rars2 "arginyl-tRNA synthetase 2, mitochondrial (putative)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9K6 RARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0G2 LOC100519344 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T160 RARS2 "Probable arginine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5H7 RARS2 "Probable arginine--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.19LOW CONFIDENCE prediction!
3rd Layer6.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
COG0018 577 COG0018, ArgS, Arginyl-tRNA synthetase [Translatio 2e-32
TIGR00456 566 TIGR00456, argS, arginyl-tRNA synthetase 2e-29
PRK12451 562 PRK12451, PRK12451, arginyl-tRNA synthetase; Revie 6e-28
PRK01611 507 PRK01611, argS, arginyl-tRNA synthetase; Reviewed 5e-22
cd00671212 cd00671, ArgRS_core, catalytic core domain of argi 2e-21
pfam00750 345 pfam00750, tRNA-synt_1d, tRNA synthetases class I 2e-20
PLN02286 576 PLN02286, PLN02286, arginine-tRNA ligase 5e-20
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 1e-09
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  123 bits (310), Expect = 2e-32
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 27/168 (16%)

Query: 65  KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
           KVV+E+SS N   P H+GH R  ++G+ +A +  +   +V   NY+ DWGTQ G+L +  
Sbjct: 118 KVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSY 177

Query: 125 KELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPD 184
           ++   +   L   P   L + YVK  +  + +P   E                       
Sbjct: 178 EKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDE----------------------- 214

Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232
             E+A    ++LE G      + W  F  ++L  ++ T +RLG+ F V
Sbjct: 215 --EEAREEVEKLESGD--EEAELWRKFVDLSLEGIKETLDRLGVKFDV 258

Length = 577
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R) Back     alignment and domain information
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
COG0018 577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 100.0
PRK12451 562 arginyl-tRNA synthetase; Reviewed 100.0
PLN02286 576 arginine-tRNA ligase 100.0
TIGR00456 566 argS arginyl-tRNA synthetase. This model recognize 100.0
KOG1195|consensus 567 100.0
KOG4426|consensus 656 100.0
PF00750 354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 100.0
PRK01611 507 argS arginyl-tRNA synthetase; Reviewed 100.0
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.95
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.48
cd00814 319 MetRS_core catalytic core domain of methioninyl-tR 98.9
cd00668 312 Ile_Leu_Val_MetRS_core catalytic core domain of is 98.9
cd00817 382 ValRS_core catalytic core domain of valyl-tRNA syn 98.86
cd00818 338 IleRS_core catalytic core domain of isoleucyl-tRNA 98.85
cd00812 314 LeuRS_core catalytic core domain of leucyl-tRNA sy 98.79
PRK12267 648 methionyl-tRNA synthetase; Reviewed 98.69
PRK11893 511 methionyl-tRNA synthetase; Reviewed 98.68
PLN02224 616 methionine-tRNA ligase 98.67
PRK00260 463 cysS cysteinyl-tRNA synthetase; Validated 98.66
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 98.63
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 98.62
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 98.5
PRK12268 556 methionyl-tRNA synthetase; Reviewed 98.45
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 98.41
PF00133 601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 98.41
PLN02943 958 aminoacyl-tRNA ligase 98.41
PLN02381 1066 valyl-tRNA synthetase 98.41
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 98.4
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 98.4
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 98.37
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 98.37
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 98.33
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 98.33
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 98.31
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 98.23
PF09334 391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 98.21
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 98.19
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 98.19
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 98.17
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 98.14
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 98.13
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 98.12
cd00674 353 LysRS_core_class_I catalytic core domain of class 98.1
PLN02563 963 aminoacyl-tRNA ligase 98.05
PLN02843 974 isoleucyl-tRNA synthetase 98.05
PF0348585 Arg_tRNA_synt_N: Arginyl tRNA synthetase N termina 98.02
PLN02610 801 probable methionyl-tRNA synthetase 98.0
PLN02959 1084 aminoacyl-tRNA ligase 97.97
PRK12418 384 cysteinyl-tRNA synthetase; Provisional 97.94
KOG0435|consensus 876 97.87
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 97.87
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 97.81
PLN02882 1159 aminoacyl-tRNA ligase 97.8
TIGR03447 411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 97.77
PLN02946 557 cysteine-tRNA ligase 97.54
PRK14536 490 cysS cysteinyl-tRNA synthetase; Provisional 97.53
PRK14535 699 cysS cysteinyl-tRNA synthetase; Provisional 97.46
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 97.42
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 97.33
PRK14534 481 cysS cysteinyl-tRNA synthetase; Provisional 97.18
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 97.11
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 97.01
cd09287240 GluRS_non_core catalytic core domain of non-discri 96.75
PF01406 300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 96.64
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 96.59
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 96.5
PF00749 314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 96.5
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 96.35
PRK04156 567 gltX glutamyl-tRNA synthetase; Provisional 96.33
PLN03233 523 putative glutamate-tRNA ligase; Provisional 96.23
TIGR03838 272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 96.2
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 96.16
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 96.12
cd00808239 GluRS_core catalytic core domain of discriminating 96.12
PLN02907 722 glutamate-tRNA ligase 96.1
COG0008 472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 96.09
PLN02859 788 glutamine-tRNA ligase 96.07
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 96.06
PRK05710 299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 95.82
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 95.69
KOG0432|consensus 995 95.62
COG0215 464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 95.6
PRK12410 433 glutamylglutaminyl-tRNA synthetase; Provisional 95.6
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 95.53
PF01921 360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 95.41
KOG0436|consensus 578 95.41
TIGR00464 470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 95.29
PRK12558 445 glutamyl-tRNA synthetase; Provisional 95.17
PRK01406 476 gltX glutamyl-tRNA synthetase; Reviewed 95.06
PLN02627 535 glutamyl-tRNA synthetase 94.86
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 94.81
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 93.03
KOG2007|consensus 586 90.81
KOG1148|consensus 764 89.27
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 87.79
KOG1147|consensus 712 83.5
KOG0434|consensus 1070 82.58
TIGR00234 377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 80.01
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-55  Score=420.60  Aligned_cols=203  Identities=25%  Similarity=0.440  Sum_probs=176.6

Q ss_pred             CccccccCchhhhhhhccc-cCCC---ceEEecC-CeEEEEeChhhHHHHHHhccCC-Cccccccc-CCCceEEEEecCC
Q psy6240           1 MVKTFTIHYHIIDGSENIN-IRGG---TQFHIDD-DNVILPVDKTEFITQVLTSTGD-KHVYKTQL-NCTDKVVVEFSSP   73 (233)
Q Consensus         1 ~ak~~~~~p~~ia~~~~~~-~~~~---~~v~~~g-gfINf~l~~~~~~~~vl~~~~~-~~~~g~~~-~~~~~v~VE~sSp   73 (233)
                      |||.++++|++|| ++|++ +...   ..|+++| |||||++++.++.+.+.+.+.. +..||... ++|++|+||||||
T Consensus        48 laK~~~~~P~eiA-~~i~~~l~~~~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa  126 (577)
T COG0018          48 LAKKLGKNPREIA-EEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA  126 (577)
T ss_pred             HhhhcCCCHHHHH-HHHHHhccccCcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC
Confidence            6899999999996 88877 4433   2399999 9999999999998777776654 45577654 6799999999999


Q ss_pred             CCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHHHHhhccCcCcccCCchHHHHHHHHHHHHhh
Q psy6240          74 NIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELA  153 (233)
Q Consensus        74 Np~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~  153 (233)
                      ||||||||||+|||||||+|||||+++||+|+|+|||||||+||++|++|+.+++.+......+|++++++.|+++++  
T Consensus       127 NptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~--  204 (577)
T COG0018         127 NPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAK--  204 (577)
T ss_pred             CCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999998753221356678999999999887  


Q ss_pred             ccCCccccccchhHHHHHHHhhhHhhcCCchHH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHhhhcCCcccC
Q psy6240         154 KINPDVQEQAPLDVLYKAYVKANDLAKINPDVQ-EQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV  232 (233)
Q Consensus       154 ~~~~~~~~~~p~~~y~g~y~~~~~~~~~d~~~~-~~a~~~~~~le~gd~~~~~~~w~~~~~~sl~~~~~~~~rlgi~FD~  232 (233)
                                              .++++|... +++++++.++|.+|++.  ++|++++++|++++++||++|||+||.
T Consensus       205 ------------------------~~~~~~~~~~~~~~~~~~k~e~~d~~~--~lw~~~v~~~l~~~k~~l~~l~V~fD~  258 (577)
T COG0018         205 ------------------------DLEEDPGNDEEEAREEVEKLESGDEEA--ELWRKFVDLSLEGIKETLDRLGVKFDV  258 (577)
T ss_pred             ------------------------HHHhCcccchHHHHHHHHHHhcCChHH--HHHHHHHHHHHHHHHHHHHHhCcccce
Confidence                                    555565533 88999999999999887  899999999999999999999999996

>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>KOG1195|consensus Back     alignment and domain information
>KOG4426|consensus Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG0435|consensus Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG0432|consensus Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0436|consensus Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2007|consensus Back     alignment and domain information
>KOG1148|consensus Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1147|consensus Back     alignment and domain information
>KOG0434|consensus Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
1bs2_A 607 Yeast Arginyl-Trna Synthetase Length = 607 3e-24
2zue_A 629 Crystal Structure Of Pyrococcus Horikoshii Arginyl- 2e-09
1iq0_A 592 Thermus Thermophilus Arginyl-Trna Synthetase Length 9e-06
3fnr_A 464 Crystal Structure Of Putative Arginyl T-Rna Synthet 6e-04
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase Length = 607 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 21/168 (12%)
Query: 65  KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
           KV++EFSSPNIAKPFH GH R T++G F+ANL       V+ +NYLGDWG QFGLL +G 
Sbjct: 144 KVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGF 203
Query: 125 KELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPD 184
           +    +   L + P+  L+  YV      +IN D++E+              D   +   
Sbjct: 204 ERYGNEEA-LVKDPIHHLFDVYV------RINKDIEEEG-------------DSIPLEQS 243
Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV 232
              +A   F+++E G      K W  F++ ++ +   TY RL I + V
Sbjct: 244 TNGKAREYFKRMEDGDEE-ALKIWKRFREFSIEKYIDTYARLNIKYDV 290
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna Synthetase Complexed With Trna(Arg) And An Atp Analog (Anp) Length = 629 Back     alignment and structure
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase Length = 592 Back     alignment and structure
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase From Campylobacter Jejuni Length = 464 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
1f7u_A 607 Arginyl-tRNA synthetase; RNA-protein complex, amin 4e-42
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 2e-35
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 3e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 5e-04
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 Back     alignment and structure
 Score =  149 bits (378), Expect = 4e-42
 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 29/216 (13%)

Query: 16  ENINIRGGT-QFHIDDDNVILPVDKTEFITQVLTSTGDKHVYKTQLNCTDKVVVEFSSPN 74
           E +   G   QF  +   +         I  +LT    +     +L    KV++EFSSPN
Sbjct: 101 EKVEANGPFIQFFFNPQFLA-----KLVIPDILT--RKEDYGSCKLVENKKVIIEFSSPN 153

Query: 75  IAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDL 134
           IAKPFH GH R T++G F+ANL       V+ +NYLGDWG QFGLL +G +    +   L
Sbjct: 154 IAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEA-L 212

Query: 135 EQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQ 194
            + P+  L+  YV+ N+  +   D                             +A   F+
Sbjct: 213 VKDPIHHLFDVYVRINKDIEEEGDSIPL-------------------EQSTNGKAREYFK 253

Query: 195 QLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
           ++E G +    K W  F++ ++ +   TY RL I +
Sbjct: 254 RMEDG-DEEALKIWKRFREFSIEKYIDTYARLNIKY 288
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Length = 629 Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
1f7u_A 607 Arginyl-tRNA synthetase; RNA-protein complex, amin 100.0
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 100.0
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 100.0
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 99.53
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.51
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 99.49
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 99.45
3c8z_A 414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 99.44
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 99.32
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 99.28
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 99.26
3tqo_A 462 Cysteinyl-tRNA synthetase; protein synthesis, liga 99.24
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.22
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 99.17
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 98.99
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 98.93
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 98.93
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 98.9
3sp1_A 501 Cysteinyl-tRNA synthetase; structural genomics, se 98.77
2o5r_A 481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 98.76
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 98.74
3gdz_A109 Arginyl-tRNA synthetase; klebsiella pneumoniae sub 98.69
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 98.66
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 98.65
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 98.47
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 98.25
1nzj_A 298 Hypothetical protein YADB; Zn cluster, glutamyl T- 96.49
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 96.14
3aii_A 553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 95.6
1j09_A 468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 95.3
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 95.22
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 95.18
4g6z_A 490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 95.16
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 95.04
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 95.0
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 94.22
2el7_A 337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 88.86
2dlc_X 394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 87.77
2g36_A 340 Tryptophanyl-tRNA synthetase; TM0492, structural g 87.71
2cyb_A 323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 87.59
1i6k_A 328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 85.98
1n3l_A 372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 85.17
1yi8_B 351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 83.18
2ts1_A 419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 81.94
3tzl_A 322 Tryptophanyl-tRNA synthetase; structural genomics, 81.3
1y42_X 392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 81.08
3hzr_A 386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 80.13
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-51  Score=398.91  Aligned_cols=210  Identities=29%  Similarity=0.502  Sum_probs=177.1

Q ss_pred             CccccccCchhhhhhhccccCC-C---ceEEecCCeEEEEeChhhHHHHHHhcc-CCCccccccc-CCCceEEEEecCCC
Q psy6240           1 MVKTFTIHYHIIDGSENINIRG-G---TQFHIDDDNVILPVDKTEFITQVLTST-GDKHVYKTQL-NCTDKVVVEFSSPN   74 (233)
Q Consensus         1 ~ak~~~~~p~~ia~~~~~~~~~-~---~~v~~~ggfINf~l~~~~~~~~vl~~~-~~~~~~g~~~-~~~~~v~VE~sSpN   74 (233)
                      |+|.++++|++|| ++|++..+ .   +.++++||||||+|++.++.+.++..+ ..+..||... +++++|+|||||||
T Consensus        75 ~~k~~~~~P~~iA-~~i~~~l~~~~~i~~ve~ag~fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN  153 (607)
T 1f7u_A           75 RLRIKGANPKDLA-VQWAEKFPCGDFLEKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPN  153 (607)
T ss_dssp             GGCCTTCCHHHHH-HHHHHTCCCTTTEEEEEEETTEEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCB
T ss_pred             HHHhcCCCHHHHH-HHHHHhccccCceeEEEEcCCEEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCC
Confidence            3589999999996 88877433 3   238999999999999999987777654 3456788753 67899999999999


Q ss_pred             CCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHHHHhhccCcCcccCCchHHHHHHHHHHHHhhc
Q psy6240          75 IAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLDVLYKAYVKANELAK  154 (233)
Q Consensus        75 p~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~  154 (233)
                      |+|||||||+||+||||+|||+|+++||+|+++|||||||+|||+|++|+.++|. ++.....|++++.++|+++++.++
T Consensus       154 ~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~-~~~~~~~~i~~l~~~Y~~~~~~~~  232 (607)
T 1f7u_A          154 IAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGN-EEALVKDPIHHLFDVYVRINKDIE  232 (607)
T ss_dssp             TTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCC-HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCc-hhhccCCChHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999998874 233445678889999999888444


Q ss_pred             cCCccccccchhHHHHHHHhhhHhhcCCchHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHhhhcCCcccC
Q psy6240         155 INPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHFSV  232 (233)
Q Consensus       155 ~~~~~~~~~p~~~y~g~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~~~~~~~w~~~~~~sl~~~~~~~~rlgi~FD~  232 (233)
                      ..       |++++.|            +.+.++|++++.+||+||++.. ++|+.++++++++|+++|++|||+||.
T Consensus       233 ~~-------~e~g~~~------------~~i~~~A~~~~~~le~gd~e~~-~~w~~~~~~~~~~~~~~~~~L~V~fD~  290 (607)
T 1f7u_A          233 EE-------GDSIPLE------------QSTNGKAREYFKRMEDGDEEAL-KIWKRFREFSIEKYIDTYARLNIKYDV  290 (607)
T ss_dssp             HS-------TTSSCHH------------HHSSHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred             hc-------ccccccc------------HHHHHHHHHHHHHhhCCCHHHH-HHHHHHHHHHHHHHHHHHHHcCCccee
Confidence            32       1122222            4578999999999999999999 999999999999999999999999984
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1f7ua2 348 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR 2e-24
d1iq0a2 370 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS 5e-23
d1irxa2 317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 5e-04
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.3 bits (241), Expect = 2e-24
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 21/166 (12%)

Query: 65  KVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGL 124
           KV++EFSSPNIAKPFH GH R T++G F+ANL       V+ +NYLGDWG QFGLL +G 
Sbjct: 9   KVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGF 68

Query: 125 KELNIKHTDLEQSPLDVLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPD 184
           +    +   ++  P+  L+  YV+ N                   K   +  D   +   
Sbjct: 69  ERYGNEEALVKD-PIHHLFDVYVRIN-------------------KDIEEEGDSIPLEQS 108

Query: 185 VQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELRGTYERLGIHF 230
              +A   F+++E G      K W  F++ ++ +   TY RL I +
Sbjct: 109 TNGKAREYFKRMEDGDEEAL-KIWKRFREFSIEKYIDTYARLNIKY 153
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1f7ua2 348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 100.0
d1iq0a2 370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 100.0
d1irxa2 317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.76
d1li5a2 315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.57
d1ivsa4 425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.31
d2d5ba2 348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.23
d1pfva2 350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.08
d1ilea3 452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 98.91
d1rqga2 361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 98.9
d1ffya3 450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 98.84
d1iq0a396 Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit 98.8
d1f7ua3134 Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit 98.4
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 98.22
d1j09a2 305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 97.0
d1gtra2 331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 96.96
d1nzja_ 286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 96.7
d1n3la_ 339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 92.34
d1h3fa1 343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 90.33
d1jila_ 323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 89.0
d1j1ua_ 306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 82.44
d1i6la_ 326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 82.4
d2ts1a_ 319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 82.33
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-44  Score=322.42  Aligned_cols=151  Identities=38%  Similarity=0.718  Sum_probs=129.7

Q ss_pred             CCCceEEEEecCCCCCCCcccccchhhhHHHHHHHHHHHcCCeeEEEeeeCchhhHHHHHHHHHHhhccCcCcccCCchH
Q psy6240          61 NCTDKVVVEFSSPNIAKPFHVGHFRGTVLGNFVANLSNYFANNVVCLNYLGDWGTQFGLLQIGLKELNIKHTDLEQSPLD  140 (233)
Q Consensus        61 ~~~~~v~VE~sSpNp~kpLHvGHlRnaiiGd~Larll~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~  140 (233)
                      +++++|+||||||||||||||||+|||||||+|||||+++||+|+|+|||||||+||++|++|+.+++. .......|.+
T Consensus         5 ~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~-~~~~~~~~~~   83 (348)
T d1f7ua2           5 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGN-EEALVKDPIH   83 (348)
T ss_dssp             SSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCC-HHHHHHCHHH
T ss_pred             CCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhcc-ccccccccch
Confidence            578999999999999999999999999999999999999999999999999999999999999998764 2233456778


Q ss_pred             HHHHHHHHHHHhhccCCccccccchhHHHHHHHhhhHhhcCCchHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Q psy6240         141 VLYKAYVKANELAKINPDVQEQAPLDVLYKAYVKANDLAKINPDVQEQASNIFQQLECGKNTLHTKDWLDFQQVTLNELR  220 (233)
Q Consensus       141 ~l~~~Y~~~~~~~~~~~~~~~~~p~~~y~g~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~~~~~~~w~~~~~~sl~~~~  220 (233)
                      ++.+.|+.+++.++...+                   ....++.+.+++++++.+++.+|++.. ++|+.++++++++++
T Consensus        84 ~l~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~~l~~~~  143 (348)
T d1f7ua2          84 HLFDVYVRINKDIEEEGD-------------------SIPLEQSTNGKAREYFKRMEDGDEEAL-KIWKRFREFSIEKYI  143 (348)
T ss_dssp             HHHHHHHHHHHHHHHSTT-------------------SSCHHHHSSHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhcccch-------------------hhhhhhhhHhHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHH
Confidence            999999988774332111                   111223467889999999999999999 999999999999999


Q ss_pred             HHhhhcCCcccC
Q psy6240         221 GTYERLGIHFSV  232 (233)
Q Consensus       221 ~~~~rlgi~FD~  232 (233)
                      ++|++|||+||.
T Consensus       144 ~~~~~l~i~fD~  155 (348)
T d1f7ua2         144 DTYARLNIKYDV  155 (348)
T ss_dssp             HHHHHTTCCCSE
T ss_pred             HHHHHHhhhhhh
Confidence            999999999995
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure