Psyllid ID: psy6336

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MMWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII
Secondary Structure (PSIPRED)
ccEEEEEEEccccccccccccEEEEcccccHHEEEEEEccccccccccEEEEEEcccccccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHEEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHcccccccccEEEEccEccccccEHHHHHHHHc
Coil and Loop (DISEMBL)
MMWRVIVEkapkarigdldkkkylvpsdltvGQFYFLIRKrvqlrpedaLFFFVnnvipptsatmgsLYQEII
Flexible Loop (DISEMBL)
MMWRVIVekapkarigdldkkkylvpsdlTVGQFYFLIRKRVQLRPEDALFFFVnnvipptsatmgslyqeii
Low Complexity Region (SEG)
MMWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII
Disordered region (IsUnstruct)
**WRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPT************
Disordered Region (DISOPRED)
MMWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII
Disordered Region (DISEMBL)
MMWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII
Disordered Region (DISPRO)
MMWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
P60517	117	Gamma-aminobutyric acid r	yes	N/A	0.917	0.572	0.940	1e-30
Q8MK68	117	Gamma-aminobutyric acid r	yes	N/A	0.917	0.572	0.940	1e-30
Q9DCD6	117	Gamma-aminobutyric acid r	yes	N/A	0.917	0.572	0.940	1e-30
O95166	117	Gamma-aminobutyric acid r	yes	N/A	0.917	0.572	0.940	1e-30
Q9GJW7	117	Gamma-aminobutyric acid r	yes	N/A	0.917	0.572	0.940	1e-30
Q5BIZ2	117	Gamma-aminobutyric acid r	no	N/A	0.917	0.572	0.865	1e-28
Q6GQ27	117	Gamma-aminobutyric acid r	N/A	N/A	0.917	0.572	0.865	1e-28
Q0VGK0	117	Gamma-aminobutyric acid r	no	N/A	0.917	0.572	0.865	1e-28
Q8R3R8	117	Gamma-aminobutyric acid r	no	N/A	0.917	0.572	0.865	1e-28
Q9H0R8	117	Gamma-aminobutyric acid r	no	N/A	0.917	0.572	0.865	1e-28

>sp|P60517|GBRAP_RAT Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 91 MGQLYQE 97

Involved in apoptosis (By similarity). May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton.
Rattus norvegicus (taxid: 10116)

>sp|Q8MK68|GBRAP_RABIT Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 91 MGQLYQE 97

May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in apoptosis.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q9DCD6|GBRAP_MOUSE Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 91 MGQLYQE 97

May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in apoptosis.

Mus musculus (taxid: 10090)

>sp|O95166|GBRAP_HUMAN Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 91 MGQLYQE 97

May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q9GJW7|GBRAP_BOVIN Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 91 MGQLYQE 97

May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in apoptosis.

Bos taurus (taxid: 9913)

>sp|Q5BIZ2|GBRL1_XENTR Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 31 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 91 MGQLYED 97

Xenopus tropicalis (taxid: 8364)

>sp|Q6GQ27|GBRL1_XENLA Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 31 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 91 MGQLYED 97

Xenopus laevis (taxid: 8355)

>sp|Q0VGK0|GBRL1_RAT Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 31 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 91 MGQLYED 97

Increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor.

Rattus norvegicus (taxid: 10116)

>sp|Q8R3R8|GBRL1_MOUSE Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 31 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 91 MGQLYED 97

Increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor.

Mus musculus (taxid: 10090)

>sp|Q9H0R8|GBRL1_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 31 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 90

Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 91 MGQLYED 97

Increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
224924410	119	microtubule-associated anchor protein [S	0.917	0.563	0.985	6e-31
121543929	117	putative GABA(A) receptor associated pro	0.917	0.572	0.985	1e-30
90820032	119	putative GABA-A receptor associated prot	0.917	0.563	0.985	1e-30
195439306	119	GK16501 [Drosophila willistoni] gi|19416	0.917	0.563	0.970	1e-30
195350740	121	GM11288 [Drosophila sechellia] gi|195481	0.917	0.553	0.970	1e-30
194764216	121	GF20824 [Drosophila ananassae] gi|190619	0.917	0.553	0.970	1e-30
194890002	121	GG18902 [Drosophila erecta] gi|190648859	0.917	0.553	0.970	1e-30
195130273	119	GI15162 [Drosophila mojavensis] gi|19390	0.917	0.563	0.970	1e-30
195168705	120	GL26902 [Drosophila persimilis] gi|19847	0.917	0.558	0.970	1e-30
24641085	121	Autophagy-specific gene 8a [Drosophila m	0.917	0.553	0.970	2e-30

>gi|224924410|gb|ACN69155.1| microtubule-associated anchor protein [Stomoxys calcitrans]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/67 (98%), Positives = 67/67 (100%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+QLRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Stomoxys calcitrans

Species: Stomoxys calcitrans

Genus: Stomoxys

Family: Muscidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543929|gb|ABM55629.1| putative GABA(A) receptor associated protein [Maconellicoccus hirsutus]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/67 (98%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRV LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90820032|gb|ABD98773.1| putative GABA-A receptor associated protein [Graphocephala atropunctata]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/67 (98%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRV LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195439306|ref|XP_002067572.1| GK16501 [Drosophila willistoni] gi|194163657|gb|EDW78558.1| GK16501 [Drosophila willistoni]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350740|ref|XP_002041896.1| GM11288 [Drosophila sechellia] gi|195481978|ref|XP_002101858.1| GE15373 [Drosophila yakuba] gi|195566095|ref|XP_002106626.1| GD16015 [Drosophila simulans] gi|194123701|gb|EDW45744.1| GM11288 [Drosophila sechellia] gi|194189382|gb|EDX02966.1| GE15373 [Drosophila yakuba] gi|194204008|gb|EDX17584.1| GD16015 [Drosophila simulans]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194764216|ref|XP_001964226.1| GF20824 [Drosophila ananassae] gi|190619151|gb|EDV34675.1| GF20824 [Drosophila ananassae]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194890002|ref|XP_001977210.1| GG18902 [Drosophila erecta] gi|190648859|gb|EDV46137.1| GG18902 [Drosophila erecta]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130273|ref|XP_002009577.1| GI15162 [Drosophila mojavensis] gi|193908027|gb|EDW06894.1| GI15162 [Drosophila mojavensis]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195168705|ref|XP_002025171.1| GL26902 [Drosophila persimilis] gi|198471233|ref|XP_002133691.1| GA22662 [Drosophila pseudoobscura pseudoobscura] gi|194108616|gb|EDW30659.1| GL26902 [Drosophila persimilis] gi|198145827|gb|EDY72318.1| GA22662 [Drosophila pseudoobscura pseudoobscura]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24641085|ref|NP_727447.1| Autophagy-specific gene 8a [Drosophila melanogaster] gi|7291184|gb|AAF46617.1| Autophagy-specific gene 8a [Drosophila melanogaster] gi|21483378|gb|AAM52664.1| LD05816p [Drosophila melanogaster] gi|220942662|gb|ACL83874.1| Atg8a-PA [synthetic construct] gi|220960302|gb|ACL92687.1| Atg8a-PA [synthetic construct]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 66/67 (98%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 90

Query: 65 MGSLYQE 71
          MGSLYQE
Sbjct: 91 MGSLYQE 97

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
FB|FBgn0052672	121	Atg8a "Autophagy-specific gene	0.917	0.553	0.970	3e-30
UNIPROTKB|Q9GJW7	117	GABARAP "Gamma-aminobutyric ac	0.917	0.572	0.940	5.6e-29
UNIPROTKB|F1Q2L2	117	GABARAP "Uncharacterized prote	0.917	0.572	0.940	5.6e-29
UNIPROTKB|O95166	117	GABARAP "Gamma-aminobutyric ac	0.917	0.572	0.940	5.6e-29
UNIPROTKB|Q8MK68	117	GABARAP "Gamma-aminobutyric ac	0.917	0.572	0.940	5.6e-29
MGI|MGI:1861742	117	Gabarap "gamma-aminobutyric ac	0.917	0.572	0.940	5.6e-29
RGD|61911	117	Gabarap "GABA(A) receptor-asso	0.917	0.572	0.940	5.6e-29
ZFIN|ZDB-GENE-030131-5174	163	gabarapa "GABA(A) receptor-ass	0.917	0.411	0.940	9.1e-29
UNIPROTKB|Q8HYB6	117	GABARAPL1 "Gamma-aminobutyric	0.917	0.572	0.865	1.7e-27
UNIPROTKB|F1P7N8	117	GABARAPL1 "Uncharacterized pro	0.917	0.572	0.865	1.7e-27

FB|FBgn0052672 Atg8a "Autophagy-specific gene 8a" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 65/67 (97%), Positives = 66/67 (98%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct:    31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 90

Query:    65 MGSLYQE 71
             MGSLYQE
Sbjct:    91 MGSLYQE 97

GO:0016236 "macroautophagy" evidence=IEP

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0031396 "regulation of protein ubiquitination" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0044753 "amphisome" evidence=IDA

UNIPROTKB|Q9GJW7 GABARAP "Gamma-aminobutyric acid receptor-associated protein" [Bos taurus (taxid:9913)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct:    31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query:    65 MGSLYQE 71
             MG LYQE
Sbjct:    91 MGQLYQE 97

GO:0005776 "autophagic vacuole" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0050811 "GABA receptor binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1Q2L2 GABARAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct:    31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query:    65 MGSLYQE 71
             MG LYQE
Sbjct:    91 MGQLYQE 97

GO:0050811 "GABA receptor binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|O95166 GABARAP "Gamma-aminobutyric acid receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct:    31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query:    65 MGSLYQE 71
             MG LYQE
Sbjct:    91 MGQLYQE 97

GO:0005874 "microtubule" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0050811 "GABA receptor binding" evidence=IPI

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000421 "autophagic vacuole membrane" evidence=IDA

GO:0006915 "apoptotic process" evidence=IDA

GO:0006605 "protein targeting" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0005776 "autophagic vacuole" evidence=IDA

UNIPROTKB|Q8MK68 GABARAP "Gamma-aminobutyric acid receptor-associated protein" [Oryctolagus cuniculus (taxid:9986)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct:    31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query:    65 MGSLYQE 71
             MG LYQE
Sbjct:    91 MGQLYQE 97

GO:0005776 "autophagic vacuole" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

MGI|MGI:1861742 Gabarap "gamma-aminobutyric acid receptor associated protein" [Mus musculus (taxid:10090)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct:    31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query:    65 MGSLYQE 71
             MG LYQE
Sbjct:    91 MGQLYQE 97

GO:0000226 "microtubule cytoskeleton organization" evidence=IDA

GO:0000421 "autophagic vacuole membrane" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0005790 "smooth endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO

GO:0008017 "microtubule binding" evidence=IDA

GO:0015031 "protein transport" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0044297 "cell body" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=ISO

GO:0050811 "GABA receptor binding" evidence=ISO

RGD|61911 Gabarap "GABA(A) receptor-associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct:    31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90

Query:    65 MGSLYQE 71
             MG LYQE
Sbjct:    91 MGQLYQE 97

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA;ISO

GO:0000421 "autophagic vacuole membrane" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005764 "lysosome" evidence=IEA;ISO

GO:0005776 "autophagic vacuole" evidence=ISO;ISS

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006914 "autophagy" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO;ISS

GO:0008017 "microtubule binding" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IMP

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0044297 "cell body" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0048487 "beta-tubulin binding" evidence=IEA;ISO

GO:0050811 "GABA receptor binding" evidence=ISO;IPI

ZFIN|ZDB-GENE-030131-5174 gabarapa "GABA(A) receptor-associated protein a" [Danio rerio (taxid:7955)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct:    72 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 131

Query:    65 MGSLYQE 71
             MG LYQE
Sbjct:   132 MGLLYQE 138

GO:0007420 "brain development" evidence=IMP

UNIPROTKB|Q8HYB6 GABARAPL1 "Gamma-aminobutyric acid receptor-associated protein-like 1" [Bos taurus (taxid:9913)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct:    31 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 90

Query:    65 MGSLYQE 71
             MG LY++
Sbjct:    91 MGQLYED 97

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1P7N8 GABARAPL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query:     5 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
             VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct:    31 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 90

Query:    65 MGSLYQE 71
             MG LY++
Sbjct:    91 MGQLYED 97

GO:0005776 "autophagic vacuole" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9GJW7	GBRAP_BOVIN	No assigned EC number	0.9402	0.9178	0.5726	yes	N/A
Q8J282	ATG8_PODAS	No assigned EC number	0.6119	0.9178	0.5537	yes	N/A
O94272	ATG8_SCHPO	No assigned EC number	0.5820	0.9178	0.5537	yes	N/A
O95166	GBRAP_HUMAN	No assigned EC number	0.9402	0.9178	0.5726	yes	N/A
P0CO54	ATG8_CRYNJ	No assigned EC number	0.6119	0.9178	0.5317	yes	N/A
Q8MK68	GBRAP_RABIT	No assigned EC number	0.9402	0.9178	0.5726	yes	N/A
Q4WJ27	ATG8_ASPFU	No assigned EC number	0.6119	0.9178	0.5677	yes	N/A
Q7XPR1	ATG8B_ORYSJ	No assigned EC number	0.6119	0.9178	0.5630	yes	N/A
Q5B2U9	ATG8_EMENI	No assigned EC number	0.6119	0.9178	0.5677	yes	N/A
Q09490	LGG1_CAEEL	No assigned EC number	0.8507	0.9178	0.5447	yes	N/A
Q6Z1D5	ATG8C_ORYSJ	No assigned EC number	0.5970	0.9178	0.5583	yes	N/A
A2QPN1	ATG8_ASPNC	No assigned EC number	0.6119	0.9178	0.5677	yes	N/A
Q9DCD6	GBRAP_MOUSE	No assigned EC number	0.9402	0.9178	0.5726	yes	N/A
P60518	GBRL1_CAVPO	No assigned EC number	0.8656	0.9178	0.5726	yes	N/A
P60517	GBRAP_RAT	No assigned EC number	0.9402	0.9178	0.5726	yes	N/A
Q2UBH5	ATG8_ASPOR	No assigned EC number	0.6119	0.9178	0.5677	yes	N/A
P38182	ATG8_YEAST	No assigned EC number	0.6119	0.9178	0.5726	yes	N/A
A7KAL9	ATG8_PENCW	No assigned EC number	0.6119	0.9178	0.5677	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	73
cd01611	112	cd01611, GABARAP, Ubiquitin domain of GABA-recepto	5e-40
pfam02991	104	pfam02991, Atg8, Autophagy protein Atg8 ubiquitin	3e-37
cd01612	87	cd01612, APG12_C, Ubiquitin-like domain of APG12	4e-04
pfam04110	87	pfam04110, APG12, Ubiquitin-like autophagy protein	0.001

>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein

 Score =  126 bits (319), Expect = 5e-40
 Identities = 50/67 (74%), Positives = 58/67 (86%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVE+ PK+ + DLDKKKYLVPSDLTVGQF ++IRKR+QLRPE ALF FVNN +PPTSAT
Sbjct: 27 VIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSAT 86

Query: 65 MGSLYQE 71
          M  LY+E
Sbjct: 87 MSQLYEE 93

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112

>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like

 Score =  119 bits (300), Expect = 3e-37
 Identities = 46/67 (68%), Positives = 58/67 (86%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VI+EKA  + + D+DKKKYLVP+DLTVGQF ++IRKR+QLRPE A+F FVNN +PPTSAT
Sbjct: 19 VIIEKASGSDLPDIDKKKYLVPADLTVGQFIYIIRKRIQLRPEKAIFLFVNNTLPPTSAT 78

Query: 65 MGSLYQE 71
          M +LY+E
Sbjct: 79 MSALYEE 85

Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. Length = 104

>gnl|CDD|176356 cd01612, APG12_C, Ubiquitin-like domain of APG12

 Score = 34.9 bits (81), Expect = 4e-04
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 4  RVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPT-S 62
          +V +   P      L +K + + +  +       +RKR++L+  D+LF ++NN   P+  
Sbjct: 1  KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPD 60

Query: 63 ATMGSLY 69
            +G+LY
Sbjct: 61 ENVGNLY 67

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5. Length = 87

>gnl|CDD|217901 pfam04110, APG12, Ubiquitin-like autophagy protein Apg12

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 4  RVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPT-S 62
          ++ +          L K K+ V    T       ++K ++L+  D+LF +VNN   P+  
Sbjct: 1  KITIRLRAIGDAPILKKSKFKVNPSQTFASVILFLKKFLKLQASDSLFLYVNNSFAPSPD 60

Query: 63 ATMGSLY 69
            +G+LY
Sbjct: 61 QIVGNLY 67

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. The Apg12 system is one of the ubiquitin-like protein conjugation systems conserved in eukaryotes. It was first discovered in yeast during systematic analyses of the apg mutants defective in autophagy. Covalent attachment of Apg12-Apg5 is essential for autophagy. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
KOG1654|consensus	116		100.0
PF02991	104	Atg8: Autophagy protein Atg8 ubiquitin like; Inter	100.0
cd01611	112	GABARAP Ubiquitin domain of GABA-receptor-associat	100.0
PTZ00380	121	microtubule-associated protein (MAP); Provisional	99.96
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	99.91
KOG3439|consensus	116		99.77
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	99.72
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	92.84
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	92.39
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	90.34
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	89.7
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	87.93
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	87.72
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	87.43
KOG2660|consensus	331		83.93
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	83.7
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	83.37
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	80.51

>KOG1654|consensus

Probab=100.00  E-value=6.1e-35  Score=186.96  Aligned_cols=71  Identities=68%  Similarity=0.983  Sum_probs=69.5

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI   72 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f   72 (73)
                      |||||||+++++++|+|||+|||||.|+|||||+++|||||+|+|++|+|+||||.+|+++++|++||+++
T Consensus        28 riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ms~~Ye~~   98 (116)
T KOG1654|consen   28 RIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSATMSALYEEE   98 (116)
T ss_pred             CCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhhHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999985

>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules

Probab=100.00  E-value=3.3e-34  Score=181.76  Aligned_cols=71  Identities=63%  Similarity=1.042  Sum_probs=63.1

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI   72 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f   72 (73)
                      ||||||||+++|++|+|||+|||||.++||+||+++||+||+|++++||||||||++|+++++||+||++|
T Consensus        16 ~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~   86 (104)
T PF02991_consen   16 KIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKY   86 (104)
T ss_dssp             EEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHH
T ss_pred             ccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987

The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein

Probab=100.00  E-value=1.9e-33  Score=180.07  Aligned_cols=72  Identities=69%  Similarity=1.061  Sum_probs=70.6

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhhC
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII   73 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f~   73 (73)
                      ||||||||++++++|+|||+|||||+++||+||..+||+||+|++++||||||||++|++|++|++||++|.
T Consensus        24 ~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~k   95 (112)
T cd01611          24 RIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHK   95 (112)
T ss_pred             ceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999983

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=99.96  E-value=3.7e-29  Score=162.40  Aligned_cols=67  Identities=24%  Similarity=0.358  Sum_probs=64.3

Q ss_pred             eeEEEEEeCCCCCCCCCcceee-eecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhhC
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKY-LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII   73 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~Kf-LVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f~   73 (73)
                      ||||||||+++++    ||+|| |||+|+|||||.++||+||+|++++ +||||||.+|+++++||+||++|.
T Consensus        27 rIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~lYe~~K   94 (121)
T PTZ00380         27 HVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIADACK   94 (121)
T ss_pred             ccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHHHHHhc
Confidence            7999999999998    89999 6999999999999999999999999 999999999999999999999873

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=99.91  E-value=1.2e-24  Score=134.05  Aligned_cols=62  Identities=26%  Similarity=0.537  Sum_probs=59.3

Q ss_pred             CCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhh
Q psy6336          11 PKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEI   72 (73)
Q Consensus        11 ~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f   72 (73)
                      +-+++|+|+|+||+||+++|++||+.+||+||++++++|+|+|||| ++|++|++||+||++|
T Consensus         8 ~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~   70 (87)
T cd01612           8 PIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF   70 (87)
T ss_pred             ECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc
Confidence            4578999999999999999999999999999999999999999999 5899999999999998

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>KOG3439|consensus

Probab=99.77  E-value=6.1e-19  Score=113.24  Aligned_cols=61  Identities=26%  Similarity=0.492  Sum_probs=58.7

Q ss_pred             CCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336          13 ARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII   73 (73)
Q Consensus        13 ~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~   73 (73)
                      .++|.|+++||-|+++.|++.++.+|||+|+|+++++||+|||| ++||+|+.+++||+||-
T Consensus        39 G~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~  100 (116)
T KOG3439|consen   39 GDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG  100 (116)
T ss_pred             CCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC
Confidence            36999999999999999999999999999999999999999998 89999999999999983

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.72  E-value=5.7e-18  Score=104.71  Aligned_cols=60  Identities=30%  Similarity=0.592  Sum_probs=44.1

Q ss_pred             CCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336          14 RIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII   73 (73)
Q Consensus        14 ~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~   73 (73)
                      ++|.|+++||-|.++.|++.++.+|||+|++.+++++|+|||+ +.|++|+++++||+||.
T Consensus        11 ~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~   71 (87)
T PF04110_consen   11 SAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG   71 (87)
T ss_dssp             T----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH-
T ss_pred             CCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC
Confidence            6999999999999999999999999999999999999999998 89999999999999983

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=92.84  E-value=0.36  Score=27.24  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=37.4

Q ss_pred             cceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          19 DKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        19 dk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      +..+|-|.++.+++.+....+++.++++++++-|+-++.-...+.|.+++
T Consensus        11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~   60 (72)
T PF11976_consen   11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL   60 (72)
T ss_dssp             EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred             CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence            35678899999999999999999999996666666666444445566654

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=92.39  E-value=0.84  Score=33.57  Aligned_cols=70  Identities=16%  Similarity=0.253  Sum_probs=55.1

Q ss_pred             eeEEEEEeCCCCCCCCCcce-----------------eeeecCCCChhhHHHHHHhhh--------------cCCCCCeE
Q psy6336           2 MWRVIVEKAPKARIGDLDKK-----------------KYLVPSDLTVGQFYFLIRKRV--------------QLRPEDAL   50 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~-----------------KfLVp~~~tv~qf~~~iRk~L--------------~L~~~~al   50 (73)
                      +|+-+++.++.+..|.+..-                 |.-.|+-+.|.-+...|-.|+              .+.+++.|
T Consensus       214 Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~l  293 (331)
T PF11816_consen  214 KISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWL  293 (331)
T ss_pred             eeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceE
Confidence            45567777665554555444                 888899999999999999999              46789999


Q ss_pred             EEEEcCcCCCCcchHHHHHhh
Q psy6336          51 FFFVNNVIPPTSATMGSLYQE   71 (73)
Q Consensus        51 fl~Vn~~lp~~~~~m~~lY~~   71 (73)
                      =|+||+.+.+.++||+.|=.-
T Consensus       294 El~C~gqvL~~~mtLaTVr~~  314 (331)
T PF11816_consen  294 ELLCNGQVLPPDMTLATVRTF  314 (331)
T ss_pred             EEEeCCeEcCCcCCHHHHHHh
Confidence            999999888889999988543

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>smart00213 UBQ Ubiquitin homologues

Probab=90.34  E-value=1.2  Score=23.85  Aligned_cols=47  Identities=13%  Similarity=0.055  Sum_probs=34.1

Q ss_pred             ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      ...+-|+.+.|++++...|.++.++++++- =|+.++.....+.++++
T Consensus        11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~-~L~~~g~~L~d~~tL~~   57 (64)
T smart00213       11 TITLEVKPSDTVSELKEKIAELTGIPVEQQ-RLIYKGKVLEDDRTLAD   57 (64)
T ss_pred             eEEEEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCEECCCCCCHHH
Confidence            344669999999999999999999987643 33345554455667665

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd00196 UBQ Ubiquitin-like proteins

Probab=89.70  E-value=1.4  Score=21.75  Aligned_cols=39  Identities=31%  Similarity=0.402  Sum_probs=30.3

Q ss_pred             CCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC
Q psy6336          17 DLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN   56 (73)
Q Consensus        17 ~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~   56 (73)
                      .-...++.++.+.|++++...+.++.+. +.+...|+.|+
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~-~~~~~~l~~~~   44 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGL-PPEQQRLLVNG   44 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCc-ChHHeEEEECC
Confidence            4566778899999999999999999884 44455566665

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=87.93  E-value=0.53  Score=28.70  Aligned_cols=44  Identities=14%  Similarity=0.232  Sum_probs=31.2

Q ss_pred             ecCCCChhhHHHHHHhhhcCCCCCeEEEEE-c---C-cCCCCcchHHHHH
Q psy6336          25 VPSDLTVGQFYFLIRKRVQLRPEDALFFFV-N---N-VIPPTSATMGSLY   69 (73)
Q Consensus        25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~V-n---~-~lp~~~~~m~~lY   69 (73)
                      ||.+.+++|+..-|++||+++++ ++-|.- .   + ..|-.+..|.+..
T Consensus        17 vp~~~~y~~L~~ki~~kLkl~~e-~i~LsYkde~s~~~v~l~d~dle~aw   65 (80)
T cd06406          17 VARGLSYATLLQKISSKLELPAE-HITLSYKSEASGEDVILSDTNMEDVW   65 (80)
T ss_pred             cCCCCCHHHHHHHHHHHhCCCch-hcEEEeccCCCCCccCcChHHHHHHH
Confidence            89999999999999999999854 455533 2   1 2344566665543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=87.72  E-value=0.63  Score=25.89  Aligned_cols=46  Identities=20%  Similarity=0.198  Sum_probs=34.8

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      ..+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus         8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~-~G~~L~d~~tL~~   53 (69)
T PF00240_consen    8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY-NGKELDDDKTLSD   53 (69)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE-TTEEESTTSBTGG
T ss_pred             EEEEECCCCCHHHhhhhcccccccccccceeee-eeecccCcCcHHH
Confidence            345699999999999999999998887665554 5543366666654

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=87.43  E-value=1.1  Score=26.08  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=36.4

Q ss_pred             eecCCCChhhHHHHHHhhhcCCCCCeEEEE--EcCcCCCCcchHHHH
Q psy6336          24 LVPSDLTVGQFYFLIRKRVQLRPEDALFFF--VNNVIPPTSATMGSL   68 (73)
Q Consensus        24 LVp~~~tv~qf~~~iRk~L~L~~~~alfl~--Vn~~lp~~~~~m~~l   68 (73)
                      =|+.+.|+++|...|..+.+.++++-=.+|  +.+.++..+.+++++
T Consensus        15 ~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~   61 (74)
T cd01813          15 TTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL   61 (74)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence            488899999999999999999998766666  345677778888764

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>KOG2660|consensus

Probab=83.93  E-value=1.1  Score=33.71  Aligned_cols=55  Identities=16%  Similarity=0.303  Sum_probs=44.7

Q ss_pred             CCCCCcceeee-ecCCCChhhHHHHHHhhhc-CCCCCeEEEEEcCcCCCCcchHHHHH
Q psy6336          14 RIGDLDKKKYL-VPSDLTVGQFYFLIRKRVQ-LRPEDALFFFVNNVIPPTSATMGSLY   69 (73)
Q Consensus        14 ~lP~Ldk~KfL-Vp~~~tv~qf~~~iRk~L~-L~~~~alfl~Vn~~lp~~~~~m~~lY   69 (73)
                      .++.|. ++|+ ++...|++++..++|+++. ++.-..+=++.|+.+..-+.||.++.
T Consensus       159 ~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~  215 (331)
T KOG2660|consen  159 TLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIA  215 (331)
T ss_pred             cccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhh
Confidence            456666 6888 8888999999999999998 77777777788887888888887764

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=83.70  E-value=4.8  Score=22.46  Aligned_cols=44  Identities=7%  Similarity=0.085  Sum_probs=32.9

Q ss_pred             eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      +-++.+.|++++...|.++.++++++--++| ++.....+.++++
T Consensus        15 ~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~-~g~~L~d~~tl~~   58 (76)
T cd01806          15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGKQMNDDKTAAD   58 (76)
T ss_pred             EEECCCCCHHHHHHHHhHhhCCChhhEEEEE-CCeEccCCCCHHH
Confidence            5589999999999999999999988644444 4444445666665

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=83.37  E-value=4.2  Score=21.89  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=32.8

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-++.+.|++++...|.++.+++++.--++| |+.....+.++++
T Consensus        11 ~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~-~g~~l~d~~~l~~   55 (69)
T cd01769          11 ELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY-AGKILKDDKTLSD   55 (69)
T ss_pred             EEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CCcCCCCcCCHHH
Confidence            46688999999999999999998876544443 5543355666654

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=80.51  E-value=2.9  Score=23.50  Aligned_cols=44  Identities=16%  Similarity=0.163  Sum_probs=32.9

Q ss_pred             eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      +=|.++.|++++...|-++.++++++- -|+.++.....+.++++
T Consensus        13 ~~v~~~~tV~~lK~~i~~~~gi~~~~q-~Li~~G~~L~d~~~l~~   56 (70)
T cd01798          13 VEVDPDTDIKQLKEVVAKRQGVPPDQL-RVIFAGKELRNTTTIQE   56 (70)
T ss_pred             EEECCCChHHHHHHHHHHHHCCCHHHe-EEEECCeECCCCCcHHH
Confidence            447899999999999999999987654 44455544466677776

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	73
3m95_A	125	Crystal Structure Of Autophagy-Related Protein Atg8		7e-33
1kjt_A	119	Crystal Structure Of The Gaba(A) Receptor Associate		7e-32
1gnu_A	117	Gaba(a) Receptor Associated Protein Gabarap Length		8e-32
1kot_A	119	Solution Structure Of Human Gaba Receptor Associate		8e-32
2l8j_A	119	Gabarapl-1 Nbr1-Lir Complex Structure Length = 119		9e-30
2r2q_A	110	Crystal Structure Of Human Gamma-Aminobutyric Acid		1e-29
2zpn_A	119	The Crystal Structure Of Saccharomyces Cerevisiae A		2e-19
2li5_A	117	Nmr Structure Of Atg8-Atg7c30 Complex Length = 117		2e-19
3rui_B	118	Crystal Structure Of Atg7c-Atg8 Complex Length = 11		2e-19
2kq7_A	119	Solution Structure Of The Autophagy-Related Protein		2e-19
2kwc_A	116	The Nmr Structure Of The Autophagy-Related Protein		2e-19
3vh3_B	119	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		2e-19
1eo6_A	117	Crystal Structure Of Gate-16 Length = 117		5e-17
3h9d_A	119	Crystal Structure Of Trypanosoma Brucei Atg8 Length		2e-15
4eoy_A	128	Plasmodium Falciparum Atg8 In Complex With Plasmodi		7e-08
3vvw_B	128	Ndp52 In Complex With Lc3c Length = 128		9e-08
3eci_A	122	Microtubule-Associated Protein 1 Light Chain 3 Alph		4e-04

>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125

Iteration: 1
 Score =  135 bits (339), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 64/67 (95%), Positives = 66/67 (98%)
Query: 5   VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
           VIVEKAPKAR+GDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSAT
Sbjct: 39  VIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 98
Query: 65  MGSLYQE 71
           MGSLYQE
Sbjct: 99  MGSLYQE 105

>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119

Iteration: 1
 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 33 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 92
Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 93 MGQLYQE 99

>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117

Iteration: 1
 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 31 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 90
Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 91 MGQLYQE 97

>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119

Iteration: 1
 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 33 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 92
Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 93 MGQLYQE 99

>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119

Iteration: 1
 Score =  124 bits (312), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 5   VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
           VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 35  VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 94
Query: 65  MGSLYQE 71
           MG LY++
Sbjct: 95  MGQLYED 101

>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSAT
Sbjct: 30 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 89
Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 90 MGQLYED 96

>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5   VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
           VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A 
Sbjct: 34  VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 93
Query: 65  MGSLYQE 71
           M ++YQE
Sbjct: 94  MSAIYQE 100

>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A 
Sbjct: 32 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 91
Query: 65 MGSLYQE 71
          M ++YQE
Sbjct: 92 MSAIYQE 98

>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A 
Sbjct: 33 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 92
Query: 65 MGSLYQE 71
          M ++YQE
Sbjct: 93 MSAIYQE 99

>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A 
Sbjct: 33 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 92
Query: 65 MGSLYQE 71
          M ++YQE
Sbjct: 93 MSAIYQE 99

>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A 
Sbjct: 31 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 90
Query: 65 MGSLYQE 71
          M ++YQE
Sbjct: 91 MSAIYQE 97

>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 5   VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
           VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A 
Sbjct: 34  VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 93
Query: 65  MGSLYQE 71
           M ++YQE
Sbjct: 94  MSAIYQE 100

>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 52/67 (77%)
Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEK   ++I D+DK+KYLVPSD+TV QF ++IRKR+QL  E A+F FV+  +P +S T
Sbjct: 31 VIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLT 90
Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 91 MGQLYEK 97

>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 5   VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
           +I EK   + IG+LD+ K+LVPSDLTVGQF  ++RKRVQL  E ALF + N+ + P+SA 
Sbjct: 34  IICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQ 93
Query: 65  MGSLYQE 71
           M  +Y +
Sbjct: 94  MADIYSK 100

>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 9/75 (12%)
Query: 5   VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRV---------QLRPEDALFFFVN 55
           V++E+A ++ +  ++KKK+LVP ++ VG+F F++ + +         +L  E  ++ FVN
Sbjct: 34  VVIERANRSNLPIIEKKKFLVPMNMLVGEFKFILHQHINQSAYGSNMKLFRERTIYLFVN 93
Query: 56  NVIPPTSATMGSLYQ 70
           N++P T   M  LY+
Sbjct: 94  NIVPKTGLLMQDLYE 108

>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 5   VIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTS 62
           V+VE+ P+   +  LDK K+LVP +LT+ QF  +IR R+ LR  +A +  VNN  +   S
Sbjct: 41  VVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMS 100
Query: 63  ATMGSLYQE 71
           ATM  +Y++
Sbjct: 101 ATMAEIYRD 109

>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 18  LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NVIPPTSATMGSLYQE 71
           LDK K+LVP  + + +   +IR+R+QL P  A F  VN + +   S  +  +Y++
Sbjct: 48  LDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQ 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	1e-23
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	1e-22
3rui_B	118	Autophagy-related protein 8; autophagosome formati	2e-22
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	5e-22
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	1e-20
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	3e-16

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110

 Score = 84.6 bits (209), Expect = 1e-23
 Identities = 58/68 (85%), Positives = 63/68 (92%)

Query: 4  RVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSA 63
           VIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNN IPPTSA
Sbjct: 29 PVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSA 88

Query: 64 TMGSLYQE 71
          TMG LY++
Sbjct: 89 TMGQLYED 96

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117

 Score = 82.3 bits (203), Expect = 1e-22
 Identities = 38/68 (55%), Positives = 52/68 (76%)

Query: 4  RVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSA 63
           VIVEK   ++I D+DK+KYLVPSD+TV QF ++IRKR+QL  E A+F FV+  +P +S 
Sbjct: 30 PVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSL 89

Query: 64 TMGSLYQE 71
          TMG LY++
Sbjct: 90 TMGQLYEK 97

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118

 Score = 82.0 bits (202), Expect = 2e-22
 Identities = 41/68 (60%), Positives = 55/68 (80%)

Query: 4  RVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSA 63
           VI EKA K+ I ++DK+KYLVP+DLTVGQF ++IRKR+ L PE A+F FVN+ +PPT+A
Sbjct: 32 PVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAA 91

Query: 64 TMGSLYQE 71
           M ++YQE
Sbjct: 92 LMSAIYQE 99

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125

 Score = 81.2 bits (200), Expect = 5e-22
 Identities = 64/68 (94%), Positives = 66/68 (97%)

Query: 4   RVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSA 63
            VIVEKAPKAR+GDLDKKKYLVPSDLTVGQFYFLIRKR+ LRPEDALFFFVNNVIPPTSA
Sbjct: 38  PVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSA 97

Query: 64  TMGSLYQE 71
           TMGSLYQE
Sbjct: 98  TMGSLYQE 105

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119

 Score = 77.4 bits (190), Expect = 1e-20
 Identities = 35/67 (52%), Positives = 48/67 (71%)

Query: 5   VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
           +I EK   + IG+LD+ K+LVPSDLTVGQF  ++RKRVQL  E ALF + N+ + P+SA 
Sbjct: 34  IICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQ 93

Query: 65  MGSLYQE 71
           M  +Y +
Sbjct: 94  MADIYSK 100

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130

 Score = 66.6 bits (162), Expect = 3e-16
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 5   VIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NVIPPTS 62
           VI+E+    + +  LDK K+LVP  + + +   +IR+R+QL    A F  VN + +   S
Sbjct: 38  VIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVS 97

Query: 63  ATMGSLYQE 71
             +  +Y+ 
Sbjct: 98  TPISEVYES 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	100.0
3rui_B	118	Autophagy-related protein 8; autophagosome formati	100.0
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	100.0
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	99.98
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	99.97
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	99.97
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	99.93
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	99.91
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	99.89
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	93.23
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	87.67
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	87.62
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	86.78
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	86.07
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	85.33
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	85.27
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	84.18
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	83.93
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	83.51
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	83.48
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	81.87
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	81.83
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	81.78
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	81.7
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	80.88
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	80.86
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	80.06

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3

Probab=100.00  E-value=3.5e-35  Score=190.43  Aligned_cols=72  Identities=89%  Similarity=1.307  Sum_probs=70.6

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhhC
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII   73 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f~   73 (73)
                      ||||||||++++++|+|||+|||||+++||+||+.+||+||+|++++||||||||++||+|++||+||++|.
T Consensus        36 rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~k  107 (125)
T 3m95_A           36 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHH  107 (125)
T ss_dssp             EEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHC
T ss_pred             eEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999983

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*

Probab=100.00  E-value=8e-35  Score=186.99  Aligned_cols=71  Identities=58%  Similarity=0.958  Sum_probs=70.2

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI   72 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f   72 (73)
                      ||||||||++++++|+|||+|||||+++||+||+.+||+||+|++++||||||||++|++|++||+||++|
T Consensus        30 riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~  100 (118)
T 3rui_B           30 RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEH  100 (118)
T ss_dssp             EEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=100.00  E-value=1.1e-34  Score=186.65  Aligned_cols=71  Identities=49%  Similarity=0.804  Sum_probs=70.3

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI   72 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f   72 (73)
                      ||||||||++++++|+|||+|||||+++||+||+.+||+||+|++++||||||||++|++|++||+||++|
T Consensus        31 rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~  101 (119)
T 3h9d_A           31 RLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKY  101 (119)
T ss_dssp             EEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHH
T ss_pred             eEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A

Probab=99.98  E-value=1.2e-32  Score=179.39  Aligned_cols=71  Identities=27%  Similarity=0.506  Sum_probs=70.0

Q ss_pred             eeEEEEEeCCCCC-CCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEE-EEcCcCCCCcchHHHHHhhh
Q psy6336           2 MWRVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFF-FVNNVIPPTSATMGSLYQEI   72 (73)
Q Consensus         2 ~iPvIvEr~~~~~-lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl-~Vn~~lp~~~~~m~~lY~~f   72 (73)
                      ||||||||+++++ +|+|||+|||||+++||+||+++||+||+|++++|||| ||||++|+++++||+||++|
T Consensus        35 kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~  107 (130)
T 2zjd_A           35 KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE  107 (130)
T ss_dssp             EEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHH
T ss_pred             ceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHh
Confidence            8999999999999 99999999999999999999999999999999999999 99999999999999999998

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3

Probab=99.97  E-value=3.8e-32  Score=173.89  Aligned_cols=71  Identities=54%  Similarity=0.879  Sum_probs=70.1

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI   72 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f   72 (73)
                      |||||||+++++++|.|||+||+||.++|++||+.+||+||+|++++||||||||.+|++|++|++||++|
T Consensus        28 ~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~   98 (117)
T 1eo6_A           28 RVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE   98 (117)
T ss_dssp             EEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH
T ss_pred             eEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999998

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=99.97  E-value=6.1e-32  Score=171.19  Aligned_cols=71  Identities=82%  Similarity=1.259  Sum_probs=70.1

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI   72 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f   72 (73)
                      |||||||+++++++|.|||+||+||.++|++||+.+||+||+|++++||||||||.+|+++++|++||++|
T Consensus        27 ~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~   97 (110)
T 2r2q_A           27 RVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN   97 (110)
T ss_dssp             EEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH
T ss_pred             ceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999998

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=99.93  E-value=2e-26  Score=142.19  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=59.6

Q ss_pred             CCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336          11 PKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII   73 (73)
Q Consensus        11 ~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~   73 (73)
                      +-+++|+|+|+||+||+++|++||+.+|||||+|++++|||+|||| ++|++|++|++||++|.
T Consensus        12 ~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k   75 (91)
T 4gdk_A           12 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG   75 (91)
T ss_dssp             ECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC
T ss_pred             ecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC
Confidence            3468999999999999999999999999999999999999999998 68999999999999983

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=99.91  E-value=1.1e-24  Score=135.62  Aligned_cols=67  Identities=18%  Similarity=0.277  Sum_probs=62.7

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII   73 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~   73 (73)
                      +|+|+.+..  +++|.|+|+||+||+++|++||+.+|||||+|+   |||||||| ++|++|++|++||++|.
T Consensus        13 KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~k   80 (96)
T 1wz3_A           13 KIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFG   80 (96)
T ss_dssp             EEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHC
T ss_pred             eEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhC
Confidence            688888776  559999999999999999999999999999998   99999999 89999999999999983

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=99.89  E-value=1.4e-23  Score=129.51  Aligned_cols=59  Identities=17%  Similarity=0.479  Sum_probs=48.8

Q ss_pred             CCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336          12 KARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII   73 (73)
Q Consensus        12 ~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~   73 (73)
                      -.++|+|+|+||+||+++|++||+.+|||||+|   +|+|+|||| ++|++|++|++||++|.
T Consensus        16 ~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk   75 (91)
T 3w1s_C           16 IGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK   75 (91)
T ss_dssp             CCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC
T ss_pred             cCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC
Confidence            358999999999999999999999999999999   799999999 68999999999999983

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=93.23  E-value=0.1  Score=31.23  Aligned_cols=47  Identities=11%  Similarity=0.130  Sum_probs=38.7

Q ss_pred             cceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchH
Q psy6336          19 DKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATM   65 (73)
Q Consensus        19 dk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m   65 (73)
                      +.-+|-||.+.++++++..-|++=++++++++.|..++.-..++++.
T Consensus        20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp   66 (82)
T 3goe_A           20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV   66 (82)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG
T ss_pred             CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh
Confidence            35689999999999999999999999999999998887433333333

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=87.67  E-value=1.6  Score=24.28  Aligned_cols=46  Identities=11%  Similarity=0.104  Sum_probs=34.8

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      .+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++.
T Consensus        21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~Gk~L~d~~tL~~~   66 (87)
T 1wh3_A           21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGIY   66 (87)
T ss_dssp             EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHHH
T ss_pred             EEEeCCCChHHHHHHHHHHHhCCChHHEEEEE-CCEEccCCCCHHHC
Confidence            45689999999999999999999887655554 55444566777753

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=87.62  E-value=1.6  Score=24.42  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=33.3

Q ss_pred             ecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          25 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      |+.+.||+++...|..+.++++++--.+| ++.....+.++++.
T Consensus        26 v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~gk~L~d~~tL~~~   68 (89)
T 1wy8_A           26 VSRKATIEELRERVWALFDVRPECQRLFY-RGKQLENGYTLFDY   68 (89)
T ss_dssp             ECTTCBHHHHHHHHHHHSCCCTTTEEEEE-TTEECCSSSBHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHCcChhhEEEEE-CCeECCCCCCHHHC
Confidence            89999999999999999999887655554 55444566777763

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=86.78  E-value=1.4  Score=24.07  Aligned_cols=47  Identities=15%  Similarity=0.112  Sum_probs=36.2

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      ..+-|.++.|++++...+.++.++++++--++|-+..+ ..+.++++.
T Consensus        16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L-~d~~tl~~~   62 (79)
T 2uyz_B           16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL   62 (79)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEe-CCCCCHHHc
Confidence            34669999999999999999999998877666644344 456777763

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=86.07  E-value=1.1  Score=24.58  Aligned_cols=46  Identities=13%  Similarity=0.149  Sum_probs=33.4

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      ..+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus        16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~-~g~~L~d~~tL~~   61 (85)
T 3mtn_B           16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD   61 (85)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTSBTGG
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE-CCEECCCCCCHHH
Confidence            345689999999999999999999987544443 5544445566554

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=85.33  E-value=1.3  Score=23.59  Aligned_cols=45  Identities=13%  Similarity=0.168  Sum_probs=32.3

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|+.+.|++++...|.++.++++++--.+| ++.....+.++++
T Consensus        14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~   58 (76)
T 3a9j_A           14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD   58 (76)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTCBTGG
T ss_pred             EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCeECCCCCcHHH
Confidence            45689999999999999999999887554444 5433344555543

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=85.27  E-value=1.1  Score=24.67  Aligned_cols=45  Identities=13%  Similarity=0.152  Sum_probs=32.8

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus        17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-~g~~L~d~~tL~~   61 (85)
T 3n3k_B           17 ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSD   61 (85)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TBEECCTTCBTTT
T ss_pred             EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CCeECCCCCCHHH
Confidence            45588999999999999999999987654444 5544445555544

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=84.18  E-value=1.7  Score=23.15  Aligned_cols=45  Identities=7%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|+.+.|++++...|.++.++++++--.+| ++.....+.++++
T Consensus        14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~   58 (76)
T 1ndd_A           14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGKQMNDEKTAAD   58 (76)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred             EEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CCEECCCCCcHHH
Confidence            45689999999999999999999887544444 5443344555543

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=83.93  E-value=0.93  Score=26.80  Aligned_cols=46  Identities=20%  Similarity=0.350  Sum_probs=34.8

Q ss_pred             ecCCCChhhHHHHHHhhhcCCCCCeEEEEEc---C-cCCCCcchHHHHHh
Q psy6336          25 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVN---N-VIPPTSATMGSLYQ   70 (73)
Q Consensus        25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn---~-~lp~~~~~m~~lY~   70 (73)
                      ||.+.+++++..-|++||++++++...-|=.   + .++..+..|.+..+
T Consensus        20 vp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~   69 (83)
T 1oey_A           20 TQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWG   69 (83)
T ss_dssp             ECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHH
Confidence            8999999999999999999987766665654   1 24566666665543

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.51  E-value=2.4  Score=22.99  Aligned_cols=45  Identities=13%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++
T Consensus        21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~-~gk~L~d~~tL~~   65 (81)
T 2dzi_A           21 SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF-KGKALADGKRLSD   65 (81)
T ss_dssp             EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE-TTEECCTTSBGGG
T ss_pred             EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE-CCeECCCCCcHHH
Confidence            45689999999999999999999877554444 4433344555554

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=83.48  E-value=1.8  Score=24.46  Aligned_cols=46  Identities=13%  Similarity=0.088  Sum_probs=34.9

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      .+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++.
T Consensus        18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~~   63 (88)
T 2hj8_A           18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGKPLEDQLPLGEY   63 (88)
T ss_dssp             EEEEESSSBHHHHHHHHHHHTCSCTTTEEEES-SSSCCCTTSBHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CCEECCCCCcHHHc
Confidence            34589999999999999999999987665555 44444567777763

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=81.87  E-value=2.2  Score=23.96  Aligned_cols=45  Identities=13%  Similarity=0.287  Sum_probs=33.3

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|..+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus        19 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~d~~tL~~   63 (90)
T 4dwf_A           19 TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQE   63 (90)
T ss_dssp             EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred             EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCeECCCCCCHHH
Confidence            35588999999999999999999887655454 5444455666654

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=81.83  E-value=2.9  Score=24.17  Aligned_cols=46  Identities=15%  Similarity=0.130  Sum_probs=35.9

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      .+-|..+.|++.+...|..+.++++++--++|-+..+ ..+.++++.
T Consensus        35 ~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L-~d~~tl~dy   80 (97)
T 1wyw_B           35 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL   80 (97)
T ss_dssp             EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEc-CCCCCHHHC
Confidence            4669999999999999999999999877666644444 456677653

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=81.78  E-value=2.7  Score=24.57  Aligned_cols=47  Identities=17%  Similarity=0.311  Sum_probs=35.0

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      ..+-|+.+.||+++...|.++.++++++--.+| ++.....+.++++.
T Consensus        34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~y   80 (100)
T 1yqb_A           34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF-AGKILKDPDSLAQC   80 (100)
T ss_dssp             EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-CCEECCCcCcHHHC
Confidence            345689999999999999999999876555444 55444566777753

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=81.70  E-value=2.3  Score=24.09  Aligned_cols=44  Identities=9%  Similarity=0.023  Sum_probs=33.5

Q ss_pred             eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcC-CCCcchHHH
Q psy6336          23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVI-PPTSATMGS   67 (73)
Q Consensus        23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~l-p~~~~~m~~   67 (73)
                      .-|+.+.||+++...|..+.++++++--.+| ++.. ...+.++++
T Consensus        25 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~lL~D~~tL~~   69 (84)
T 2kk8_A           25 LEVDYRDTLLVVKQKIERSQHIPVSKQTLIV-DGIVILREDLTVEQ   69 (84)
T ss_dssp             EEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCCSSSBHHH
T ss_pred             EEECCCChHHHHHHHHHHHHCcChHHEEEEE-CCEEecCCcCCHHH
Confidence            4589999999999999999999887554444 4433 566777775

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=80.88  E-value=5.6  Score=22.32  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=37.2

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      ..|-|.++.+++.+....+++.++++++--|+|-++.+ ..+.|.+++
T Consensus        21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l   67 (79)
T 3a4r_A           21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKL-SGKELPADL   67 (79)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEEC-CSCCCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence            46789999999999999999999999987777744444 445666654

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=80.86  E-value=2  Score=23.74  Aligned_cols=45  Identities=7%  Similarity=0.090  Sum_probs=32.9

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|+.+.||+++..-|..+.++++++--.+| ++.....+.++++
T Consensus        26 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~~L~d~~tL~~   70 (88)
T 3dbh_I           26 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGKQMNDEKTAAD   70 (88)
T ss_dssp             EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTEECCTTSBGGG
T ss_pred             EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-CCeECCCCCcHHH
Confidence            45689999999999999999999876544444 5544445666654

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=80.06  E-value=3  Score=22.69  Aligned_cols=45  Identities=13%  Similarity=0.090  Sum_probs=33.2

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus        18 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~~L~d~~tL~~   62 (79)
T 3phx_B           18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGKPLEDQLPLGE   62 (79)
T ss_dssp             EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred             EEEECCcChHHHHHHHHHhhcCCCHHHEEEEE-CCEECCCCCcHHH
Confidence            35689999999999999999999987654444 5444445666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1eo6a_	116	d.15.1.3 (A:) Golgi-associated ATPase enhancer of	7e-28
d3d32a1	118	d.15.1.3 (A:1-118) GABA(A) receptor associated pro	5e-26
d2zjda1	119	d.15.1.3 (A:2-120) Microtubule-associated proteins	4e-20

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.4 bits (235), Expect = 7e-28
 Identities = 38/67 (56%), Positives = 52/67 (77%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEK   ++I D+DK+KYLVPSD+TV QF ++IRKR+QL  E A+F FV+  +P +S T
Sbjct: 31 VIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLT 90

Query: 65 MGSLYQE 71
          MG LY++
Sbjct: 91 MGQLYEK 97

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (223), Expect = 5e-26
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 5  VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSAT 64
          VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR+ LR EDALFFFVNNVIPPTSAT
Sbjct: 33 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 92

Query: 65 MGSLYQE 71
          MG LYQE
Sbjct: 93 MGQLYQE 99

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (184), Expect = 4e-20
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 5   VIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NVIPPTS 62
           VI+E+    + +  LDK K+LVP  + + +   +IR+R+QL    A F  VN + +   S
Sbjct: 32  VIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVS 91

Query: 63  ATMGSLYQE 71
             +  +Y+ 
Sbjct: 92  TPISEVYES 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d3d32a1	118	GABA(A) receptor associated protein GABARAP {Human	100.0
d1eo6a_	116	Golgi-associated ATPase enhancer of 16 kD, Gate-16	99.98
d2zjda1	119	Microtubule-associated proteins 1A/1B light chain	99.97
d1wz3a1	84	Autophagy-related protein 12b (APG12b) {Thale cres	99.63
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	90.28
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	90.25
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	89.74
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	88.71
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	88.47
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	88.32
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	87.41
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	86.89
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	86.54
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	86.41
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	86.22
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	86.06
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	85.0
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	83.64
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	83.16
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	82.2
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	81.61
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	81.3
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	81.29

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=178.28  Aligned_cols=72  Identities=88%  Similarity=1.269  Sum_probs=70.4

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhhC
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEII   73 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f~   73 (73)
                      |||||||++++|++|+|||+|||||.|+|+|||+++||+||+|++++||||||||.+|+++++|++||++|.
T Consensus        30 riPVIve~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflfvn~~~~~~~~ti~~lY~~~k  101 (118)
T d3d32a1          30 RVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHH  101 (118)
T ss_dssp             EEEEEEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTCBHHHHHHHHC
T ss_pred             CceEEEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEEECCcccCccccHHHHHHHhC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999973

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=5.8e-33  Score=176.42  Aligned_cols=71  Identities=54%  Similarity=0.879  Sum_probs=69.9

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHHHhhh
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQEI   72 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~lY~~f   72 (73)
                      |||||||+++++++|+|||+|||||.|+|+|||+++||+||+|++++||||||||.+|+++++||+||+++
T Consensus        28 rIPVIve~~~~~~l~~ldk~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv~~~l~~~s~~i~~lY~~~   98 (116)
T d1eo6a_          28 RVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE   98 (116)
T ss_dssp             EEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH
T ss_pred             CceEEEEECCcCcCCcccCcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEECCcccchhhhHHHHHHHc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.2e-32  Score=171.50  Aligned_cols=72  Identities=29%  Similarity=0.530  Sum_probs=68.5

Q ss_pred             eeEEEEEeCCCC-CCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336           2 MWRVIVEKAPKA-RIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII   73 (73)
Q Consensus         2 ~iPvIvEr~~~~-~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~   73 (73)
                      ||||||||++++ ++|+|||+|||||.|+|+|||+++||+||+|++++|||||||+ ++|+++++||+||++|.
T Consensus        29 riPVIve~~~~~~~lp~Ldk~KfLVp~d~tv~qf~~~iRkrl~l~~~~alFlfvn~~~~p~~~~~i~~lY~~~k  102 (119)
T d2zjda1          29 KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEK  102 (119)
T ss_dssp             EEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHC
T ss_pred             cceEEEEECCCCCcCccccceEEEEecCccHHHHHHHHHHHhCCCCcceEEEEEcCCccCCchhHHHHHHHHcC
Confidence            899999999865 7999999999999999999999999999999999999999996 79999999999999983

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=3.6e-16  Score=93.81  Aligned_cols=58  Identities=21%  Similarity=0.370  Sum_probs=54.8

Q ss_pred             CCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcC-cCCCCcchHHHHHhhhC
Q psy6336          13 ARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQEII   73 (73)
Q Consensus        13 ~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~-~lp~~~~~m~~lY~~f~   73 (73)
                      -++|.|+++||-|.++.+++.++.+|||+|+   .+++|+|||+ +.|++|+++++||+||.
T Consensus        11 G~aPilk~~~~kv~~~~~f~~vi~FLrk~Lk---~dsvf~Yin~sFaPspDe~vg~Ly~~f~   69 (84)
T d1wz3a1          11 GGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNFG   69 (84)
T ss_dssp             TTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---CSSCEEEEEEEECCCTTSBHHHHHHHHC
T ss_pred             CCCcccccceEEECCCCchHHHHHHHHHHhc---CCeEEEEEccccCCChhhHHHHHHHhcC
Confidence            4589999999999999999999999999998   6899999998 89999999999999983

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.28  E-value=0.84  Score=25.96  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=42.6

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      +|.|+|.-..+      ++..+-|.++.||+++..-|..+.+.++++--.+| ++.....+.+|++
T Consensus        28 ~i~V~V~~~~G------k~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~d   86 (100)
T d1uh6a_          28 MIEVVCNDRLG------KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK-WYTIFKDHVSLGD   86 (100)
T ss_dssp             EEEEEEECSSS------SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCSSCBHHH
T ss_pred             eEEEEEECCCC------CEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEE-EeecccCcCCHHH
Confidence            45666654322      33456689999999999999999999987766665 5555577777765

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.25  E-value=0.58  Score=26.22  Aligned_cols=37  Identities=16%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCC
Q psy6336          23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIP   59 (73)
Q Consensus        23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp   59 (73)
                      --||.++||+++...|.+..++++++.--+|.++.++
T Consensus        27 ~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~   63 (97)
T d1wjna_          27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMP   63 (97)
T ss_dssp             EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSC
T ss_pred             EEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCC
Confidence            3599999999999999999999986444456665433

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=89.74  E-value=0.14  Score=27.75  Aligned_cols=40  Identities=10%  Similarity=0.089  Sum_probs=32.9

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCC
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPP   60 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~   60 (73)
                      ..|-|..+.+++.+...+.++.++++++--|+|=+..+.+
T Consensus        16 ~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~   55 (79)
T d1euvb_          16 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA   55 (79)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCT
T ss_pred             EEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCC
Confidence            4588999999999999999999999998877774334433

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=0.37  Score=25.95  Aligned_cols=47  Identities=17%  Similarity=0.183  Sum_probs=36.9

Q ss_pred             ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      ..++-|.++.||+++...|..+.+.++++--++|-+..+ ..+.++++
T Consensus        15 ~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L-~d~~tL~~   61 (80)
T d1ttna1          15 DLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEE   61 (80)
T ss_dssp             EEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEEC-CTTSHHHH
T ss_pred             EEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEc-CCCCcHHH
Confidence            345679999999999999999999998877665555455 56777776

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.77  Score=24.97  Aligned_cols=45  Identities=11%  Similarity=0.107  Sum_probs=36.2

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|..+.||.++...|..+.++++++.-.+| ++.....+.+|++
T Consensus        21 ~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~~   65 (87)
T d1wh3a_          21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGI   65 (87)
T ss_dssp             EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHH
T ss_pred             EEEECCcCcHHHHHHHHHHHHCcChHHeEEEe-eceEcCCCCcHHH
Confidence            44588999999999999999999998877777 4444457778876

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.32  E-value=0.22  Score=28.51  Aligned_cols=51  Identities=18%  Similarity=0.390  Sum_probs=36.3

Q ss_pred             Ccceee--eecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          18 LDKKKY--LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        18 Ldk~Kf--LVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      ++...|  =|+++.||+++...|..+.++++++--.+|-+..+-..+.+|++.
T Consensus        19 ~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~   71 (102)
T d1v5oa_          19 LTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSY   71 (102)
T ss_dssp             CCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHH
T ss_pred             CCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHc
Confidence            444444  499999999999999999999987554444333554456678763

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.41  E-value=0.5  Score=25.42  Aligned_cols=42  Identities=17%  Similarity=0.231  Sum_probs=34.1

Q ss_pred             ecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          25 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      |.++.||+++...|..+.++++++--.+|-+..+ ..+.++++
T Consensus        19 v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L-~d~~tL~~   60 (76)
T d1wy8a1          19 VSRKATIEELRERVWALFDVRPECQRLFYRGKQL-ENGYTLFD   60 (76)
T ss_dssp             ECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEEC-CSSSBHHH
T ss_pred             cCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEe-cCCCCHHH
Confidence            8999999999999999999998877777744444 56777765

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.89  E-value=0.78  Score=24.78  Aligned_cols=47  Identities=13%  Similarity=0.256  Sum_probs=36.3

Q ss_pred             ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      +..+-|+++.||+++...|..+.+.++++--.+| ++.....+.++++
T Consensus        21 ~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f-~Gk~L~d~~tL~~   67 (83)
T d1wx8a1          21 CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF-TGKILRDQDILSQ   67 (83)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE-TTEECCTTSCHHH
T ss_pred             cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEE-EhhccccCCcHHH
Confidence            4456799999999999999999999987665555 5444455667876

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.54  E-value=1.3  Score=23.27  Aligned_cols=59  Identities=15%  Similarity=0.239  Sum_probs=41.4

Q ss_pred             eeEEEEEeCCCCCCCCCcceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336           2 MWRVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus         2 ~iPvIvEr~~~~~lP~Ldk~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      ||-|.|+-..+      ++...=|.++.||+++...|..+.++++++--.+|-+..+ ..+.++++
T Consensus         1 mi~i~vk~~~G------k~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L-~d~~tL~~   59 (73)
T d1m94a_           1 MIEVVVNDRLG------KKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVL-KDHISLED   59 (73)
T ss_dssp             CEEEEEEETTT------EEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEE-CTTSBHHH
T ss_pred             CeEEEEECCCC------CEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEe-cccCcHHH
Confidence            35566655422      2344569999999999999999999999766555544444 56777776

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=0.85  Score=24.04  Aligned_cols=46  Identities=13%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      ..+-|+++.||+++..-|..+.+.++++--.+| ++.....+.++++
T Consensus        13 ~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~d   58 (73)
T d1wx9a1          13 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQE   58 (73)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEE-TTEECCSSSBHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCChHHEEEEE-CCeEccCCCCHHH
Confidence            345699999999999999999999987766566 4444456778877

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=0.49  Score=25.43  Aligned_cols=41  Identities=12%  Similarity=0.147  Sum_probs=32.2

Q ss_pred             ecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHH
Q psy6336          25 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG   66 (73)
Q Consensus        25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~   66 (73)
                      ++.+.||+++...|..+.++++++--++|-+..+ ..+.+++
T Consensus        19 v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~   59 (76)
T d2faza1          19 LSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQM-EDGHTLF   59 (76)
T ss_dssp             ECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTT
T ss_pred             CCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEec-cCCCcHH
Confidence            8999999999999999999999887777754444 3444444

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.06  E-value=0.34  Score=26.14  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=34.4

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      ..-|.++.||+++...|..+.++++++--.+|-+..+ ..+.++++
T Consensus        16 ~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L-~d~~tL~~   60 (78)
T d2zeqa1          16 PVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKEL-PNHLTVQN   60 (78)
T ss_dssp             EEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEE-CTTCBGGG
T ss_pred             EEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEc-CCCCCHHH
Confidence            3468999999999999999999999876555555455 45666654

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=0.47  Score=25.13  Aligned_cols=46  Identities=13%  Similarity=0.130  Sum_probs=34.7

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      ..+-|.++.||+++..-|..+.+.++++--.+|-+..+ ..+.++++
T Consensus        16 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L-~d~~tL~~   61 (76)
T d1z2ma2          16 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPLGE   61 (76)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeEC-CCCCcHHH
Confidence            34669999999999999999999998766655544444 45666654

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=1  Score=23.97  Aligned_cols=47  Identities=15%  Similarity=0.104  Sum_probs=37.8

Q ss_pred             eeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHHH
Q psy6336          21 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL   68 (73)
Q Consensus        21 ~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~l   68 (73)
                      -.|-|.++.+++.+.....++.++++++.-|+|=+..+.+. .|.+++
T Consensus        15 v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~-~T~~~l   61 (77)
T d2uyzb1          15 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKEL   61 (77)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CCHHHc
Confidence            46889999999999999999999999888888655566554 566554

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.16  E-value=1.3  Score=24.15  Aligned_cols=49  Identities=12%  Similarity=0.162  Sum_probs=38.3

Q ss_pred             Ccce--eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          18 LDKK--KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        18 Ldk~--KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      |+.+  .+-|+.+.||+++...|..+.+.++++--.+|-+..+ ..+.+|++
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L-~D~~tL~d   69 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFI-KDSNSLAY   69 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEE-CTTSBHHH
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCc-CCCCCHHH
Confidence            4444  3569999999999999999999998887777755555 46777876

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.66  Score=24.54  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             eeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          23 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        23 fLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      +-|..+.||+++..-|..+.+.++++.-.+|-+.. -..+.++++
T Consensus        15 l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~-L~d~~tL~~   58 (76)
T d1ogwa_          15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSD   58 (76)
T ss_dssp             EECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEE-CCTTSBGGG
T ss_pred             EEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeE-cCCCCCHHH
Confidence            45889999999999999999999988766664433 345666654

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.61  E-value=1.2  Score=24.31  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=33.1

Q ss_pred             ecCCCChhhHHHHHHhhhcCCCCCeEEEE--EcCcCCCCcchHHHH
Q psy6336          25 VPSDLTVGQFYFLIRKRVQLRPEDALFFF--VNNVIPPTSATMGSL   68 (73)
Q Consensus        25 Vp~~~tv~qf~~~iRk~L~L~~~~alfl~--Vn~~lp~~~~~m~~l   68 (73)
                      |+.+.||++|...|..+.++++++-=.+|  ..+.+...+.+++++
T Consensus        24 v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~   69 (90)
T d1v5ta_          24 LSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL   69 (90)
T ss_dssp             CCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH
T ss_pred             eCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHc
Confidence            79999999999999999999886554443  345555566677653

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.30  E-value=1.4  Score=23.71  Aligned_cols=47  Identities=17%  Similarity=0.394  Sum_probs=35.9

Q ss_pred             ceeeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          20 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        20 k~KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      +..+-|.++.||+++...|..+.+.++++--.+|-+..+ ..+.++++
T Consensus        18 ~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L-~D~~tL~~   64 (84)
T d1yqba1          18 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL-KDPDSLAQ   64 (84)
T ss_dssp             EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTSBHHH
T ss_pred             cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeec-cccCcHHH
Confidence            445779999999999999999999998766555544444 55667766

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.29  E-value=0.73  Score=24.16  Aligned_cols=45  Identities=7%  Similarity=0.138  Sum_probs=34.7

Q ss_pred             eeeecCCCChhhHHHHHHhhhcCCCCCeEEEEEcCcCCCCcchHHH
Q psy6336          22 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS   67 (73)
Q Consensus        22 KfLVp~~~tv~qf~~~iRk~L~L~~~~alfl~Vn~~lp~~~~~m~~   67 (73)
                      .+-|.++.||+++...|..+.+.++++--.+|-+..+ ..+.++++
T Consensus        14 ~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L-~d~~tL~~   58 (73)
T d1bt0a_          14 EIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQL-ADDKTAKD   58 (73)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGG
T ss_pred             EEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEc-CCCCcHHH
Confidence            4458889999999999999999998877666655454 45666654