Psyllid ID: psy6392

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MKGFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHccccccccccccccEEEcccccccccccEEEEEEcccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccHHccccccccEEEcccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHcccEEEccccccccEEEcccccccccccEEEEEEcccHHHHHHHHHccccccccccccHHHHHHcccHccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccEEEEcccccEEEEccccEEEccccHHHHHHHcc
Coil and Loop (DISEMBL)
mkgflylsqplftgadqrrqypplsllQLQKfidtnridpskpidLAALcntglytfepfhnhygvnltdegadnfKAKINIEVQWTSEPVIAAIERngeaiplrfqppqdailyysnpesrgyladpeqISWQRFALAQKygytlpeiekdpdfemlsmrkdprqvfyglepgwvvnvidkmilkpkdpelieyyks
Flexible Loop (DISEMBL)
MKGFLYLSQPlftgadqrrqypPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGlepgwvvnvidkmilkpkdpelieyyks
Low Complexity Region (SEG)
MKGFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS
Disordered region (IsUnstruct)
***FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKD**LI*****
Disordered Region (DISOPRED)
*KGFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPESRGYLADPEQISW**FAL**KYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPE**EYY**
Disordered Region (DISEMBL)
MKGFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS
Disordered Region (DISPRO)
*KGFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKGFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q5ZKT8	297	39S ribosomal protein L15	yes	N/A	0.979	0.653	0.493	2e-53
Q6AZN4	296	39S ribosomal protein L15	N/A	N/A	0.934	0.625	0.497	1e-51
Q0VC21	297	39S ribosomal protein L15	yes	N/A	0.934	0.622	0.507	3e-51
Q9P015	296	39S ribosomal protein L15	yes	N/A	0.934	0.625	0.497	7e-51
Q9CPR5	295	39S ribosomal protein L15	yes	N/A	0.934	0.627	0.492	2e-50
Q6DGM3	296	39S ribosomal protein L15	yes	N/A	0.904	0.604	0.497	4e-49
B9KLB0	161	50S ribosomal protein L15	yes	N/A	0.409	0.503	0.310	2e-06
Q3J5Q3	161	50S ribosomal protein L15	yes	N/A	0.409	0.503	0.310	2e-06
A3PGN0	161	50S ribosomal protein L15	yes	N/A	0.409	0.503	0.310	2e-06
A4WVI9	160	50S ribosomal protein L15	yes	N/A	0.409	0.506	0.298	2e-06

>sp|Q5ZKT8|RM15_CHICK 39S ribosomal protein L15, mitochondrial OS=Gallus gallus GN=MRPL15 PE=2 SV=1

 Score =  208 bits (529), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/223 (49%), Positives = 137/223 (61%), Gaps = 29/223 (13%)

Query: 5   LYLSQPLFT---GADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFH 61
            YLS P +    G   RR+Y PLSL +LQ  ID  R+DP++PIDL  L N    T +P  
Sbjct: 75  FYLSIPKYGFNEGHSCRRKYHPLSLQKLQYLIDLGRVDPTQPIDLTQLTNARGVTVQPLK 134

Query: 62  NHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNG---------------------- 99
             YGV L +EGAD F AKINIEVQ  SE  IAAIE+NG                      
Sbjct: 135 RDYGVQLVEEGADIFAAKINIEVQRASELAIAAIEKNGGVVTASFYDPRSLEILIRPVPF 194

Query: 100 ----EAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDF 155
               + IP R  PP+D + YY++  +RGYLADP +++  R  LA+KYGYTLP+I KD  F
Sbjct: 195 FLRGQPIPKRMLPPEDLVRYYTDASNRGYLADPSKVAEARLELAKKYGYTLPDITKDELF 254

Query: 156 EMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           +MLS RKDPRQ+F+GL PGW+VN+ DK ILKP D  L++YY S
Sbjct: 255 KMLSTRKDPRQIFFGLAPGWIVNMADKKILKPTDERLLKYYSS 297

Gallus gallus (taxid: 9031)

>sp|Q6AZN4|RM15_XENLA 39S ribosomal protein L15, mitochondrial OS=Xenopus laevis GN=mrpl15 PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/211 (49%), Positives = 130/211 (61%), Gaps = 26/211 (12%)

Query: 14  GADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGA 73
           G   RRQY PLSL +LQ  ID  RIDP++PIDL  L N    T +P    YGV L +EGA
Sbjct: 86  GHSFRRQYQPLSLNRLQYLIDLGRIDPTQPIDLTQLVNARGVTIQPLKRDYGVQLVEEGA 145

Query: 74  DNFKAKINIEVQWTSEPVIAAIERNG--------------------------EAIPLRFQ 107
           D F AK+NIEVQW S+  IAAIE+NG                          + IP R  
Sbjct: 146 DLFAAKVNIEVQWASQLAIAAIEKNGGLITTGFYDPRSLDVLCKPVPFFMRGQPIPKRML 205

Query: 108 PPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQV 167
           PP+D + YY++ E+RGYLADP  +   R  LA+KYGY LP+I KD  ++MLS RKDPRQ+
Sbjct: 206 PPEDLVKYYTDAENRGYLADPRNVLEARKQLARKYGYVLPDITKDELYQMLSTRKDPRQI 265

Query: 168 FYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           F+GL PGW+VN+ +K ILKP D  L+ YY S
Sbjct: 266 FFGLAPGWIVNMPEKKILKPTDERLLSYYSS 296

Xenopus laevis (taxid: 8355)

>sp|Q0VC21|RM15_BOVIN 39S ribosomal protein L15, mitochondrial OS=Bos taurus GN=MRPL15 PE=1 SV=1

 Score =  201 bits (511), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 130/211 (61%), Gaps = 26/211 (12%)

Query: 14  GADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGA 73
           G   RRQY PLSL +LQ  ID  R+DP++PIDL  L N    T +P    YGV L +EGA
Sbjct: 87  GHSFRRQYQPLSLNRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPSKRDYGVQLVEEGA 146

Query: 74  DNFKAKINIEVQWTSEPVIAAIERNG--------------------------EAIPLRFQ 107
           D FKAK+NIEVQ  SE  IAAIE+NG                          + IP R  
Sbjct: 147 DTFKAKVNIEVQLASELAIAAIEKNGGVVTTAFYDPRSLEILCKPIPFFLRGQPIPKRML 206

Query: 108 PPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQV 167
           PP+  + YY++  +RGYLADP +    R  LA+KYGY LP+I KD  F+MLS RKDPRQ+
Sbjct: 207 PPEALVPYYTDARNRGYLADPARFPEARLELAKKYGYILPDITKDELFKMLSSRKDPRQI 266

Query: 168 FYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           F+GL PGWVVN+ DK ILKP D +L+EYY S
Sbjct: 267 FFGLAPGWVVNMADKKILKPTDEKLLEYYSS 297

Bos taurus (taxid: 9913)

>sp|Q9P015|RM15_HUMAN 39S ribosomal protein L15, mitochondrial OS=Homo sapiens GN=MRPL15 PE=1 SV=1

 Score =  199 bits (507), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 105/211 (49%), Positives = 129/211 (61%), Gaps = 26/211 (12%)

Query: 14  GADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGA 73
           G   RRQY PLSL +LQ  ID  R+DPS+PIDL  L N    T +P    YGV L +EGA
Sbjct: 86  GHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQLVNGRGVTIQPLKRDYGVQLVEEGA 145

Query: 74  DNFKAKINIEVQWTSEPVIAAIERNG--------------------------EAIPLRFQ 107
           D F AK+NIEVQ  SE  IAAIE+NG                          + IP R  
Sbjct: 146 DTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYDPRSLDIVCKPVPFFLRGQPIPKRML 205

Query: 108 PPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQV 167
           PP++ + YY++ ++RGYLADP +    R  LA+KYGY LP+I KD  F+ML  RKDPRQ+
Sbjct: 206 PPEELVPYYTDAKNRGYLADPAKFPEARLELARKYGYILPDITKDELFKMLCTRKDPRQI 265

Query: 168 FYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           F+GL PGWVVN+ DK ILKP D  L++YY S
Sbjct: 266 FFGLAPGWVVNMADKKILKPTDENLLKYYTS 296

Homo sapiens (taxid: 9606)

>sp|Q9CPR5|RM15_MOUSE 39S ribosomal protein L15, mitochondrial OS=Mus musculus GN=Mrpl15 PE=1 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/211 (49%), Positives = 127/211 (60%), Gaps = 26/211 (12%)

Query: 14  GADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGA 73
           G   R QY PLSL +LQ  ID  R+DP++PIDL  L N    T +P    YGV L +EGA
Sbjct: 85  GHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPLKRDYGVQLVEEGA 144

Query: 74  DNFKAKINIEVQWTSEPVIAAIERNG--------------------------EAIPLRFQ 107
           D F+AKINIEVQ  SE  IAAIE+NG                          + IP R  
Sbjct: 145 DTFQAKINIEVQLASELAIAAIEKNGGVVTTAFYDPRSLEILCKPIPFFLRGQPIPKRML 204

Query: 108 PPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQV 167
           PP+  + YY++ ++RGYLADP +    R  LA K+GY LP+I KD  F MLS RKDPRQ+
Sbjct: 205 PPESLVPYYTDAKNRGYLADPAKFPEARLELAMKFGYVLPDITKDELFRMLSARKDPRQI 264

Query: 168 FYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           F+GL PGWVVN+ DK ILKP D  L++YY S
Sbjct: 265 FFGLAPGWVVNMADKKILKPTDENLLKYYSS 295

Mus musculus (taxid: 10090)

>sp|Q6DGM3|RM15_DANRE 39S ribosomal protein L15, mitochondrial OS=Danio rerio GN=mrpl15 PE=2 SV=1

 Score =  194 bits (492), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/205 (49%), Positives = 127/205 (61%), Gaps = 26/205 (12%)

Query: 20  QYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAK 79
           QYPPLSL +LQ  ID  RIDPS+PIDL  L N      +P    YGV L DEGAD F AK
Sbjct: 92  QYPPLSLRRLQYLIDLGRIDPSQPIDLTQLVNGRGVEIQPQKRDYGVQLVDEGADIFCAK 151

Query: 80  INIEVQWTSEPVIAAIERNG--------------------------EAIPLRFQPPQDAI 113
           +N+EVQ  SE  IAA+ERNG                          E IP R  P +D +
Sbjct: 152 VNLEVQAASEKAIAAVERNGGVITTSYYDPRSLQILIKPVPFFMPGEPIPKRLFPGEDLL 211

Query: 114 LYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEP 173
            YY++  +RGYLADP++I   R  LA+KYGY++P+I KD  FEML  RK+PR +F+GL P
Sbjct: 212 PYYTDANNRGYLADPDKIQTARMDLAKKYGYSIPDISKDTLFEMLVQRKNPRHIFFGLSP 271

Query: 174 GWVVNVIDKMILKPKDPELIEYYKS 198
           GWVVN+ DK ILKP D ++++YY S
Sbjct: 272 GWVVNMADKKILKPTDDKVLQYYGS 296

Danio rerio (taxid: 7955)

>sp|B9KLB0|RL15_RHOSK 50S ribosomal protein L15 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplO PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 18  RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK 77
           R++Y  ++L  +QKF+D  ++D S+PID  A+   G+ +    H   G+ +  +G     
Sbjct: 70  RKEYAVVNLGLIQKFVDAGKLDASQPIDENAIVAAGVTS----HKRDGIRVLAKG--EIT 123

Query: 78  AKINIEVQWTSEPVIAAIERNGEAIPL 104
           AK+ + V   S+  + AIE+ G +I L
Sbjct: 124 AKLALTVSGASKSAVEAIEKAGGSITL 150

Binds to the 23S rRNA.

Rhodobacter sphaeroides (strain KD131 / KCTC 12085) (taxid: 557760)

>sp|Q3J5Q3|RL15_RHOS4 50S ribosomal protein L15 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplO PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 18  RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK 77
           R++Y  ++L  +QKF+D  ++D S+PID  A+   G+ +    H   G+ +  +G     
Sbjct: 70  RKEYAVVNLGLIQKFVDAGKLDASQPIDENAIVAAGVTS----HKRDGIRVLAKG--EIT 123

Query: 78  AKINIEVQWTSEPVIAAIERNGEAIPL 104
           AK+ + V   S+  + AIE+ G +I L
Sbjct: 124 AKLALTVSGASKSAVEAIEKAGGSITL 150

Binds to the 23S rRNA.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|A3PGN0|RL15_RHOS1 50S ribosomal protein L15 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplO PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 18  RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK 77
           R++Y  ++L  +QKF+D  ++D S+PID  A+   G+ +    H   G+ +  +G     
Sbjct: 70  RKEYAVVNLGLIQKFVDAGKLDASQPIDENAIVAAGVTS----HKRDGIRVLAKG--EIT 123

Query: 78  AKINIEVQWTSEPVIAAIERNGEAIPL 104
           AK+ + V   S+  + AIE+ G +I L
Sbjct: 124 AKLALTVSGASKSAVEAIEKAGGSITL 150

Binds to the 23S rRNA.

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) (taxid: 349101)

>sp|A4WVI9|RL15_RHOS5 50S ribosomal protein L15 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplO PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 18  RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK 77
           R++Y  ++L  +QKF+D  ++D S+PID  A+   G+ +    H   G+ +  +G     
Sbjct: 70  RKEYAVVNLGLIQKFVDAGKLDASQPIDENAIVAAGVTS----HKRDGIRVLAKG--EIT 123

Query: 78  AKINIEVQWTSEPVIAAIERNGEAIPL 104
           AK+ + V   S+  + A+E+ G +I L
Sbjct: 124 AKLTLTVAGASKSAVEAVEKAGGSITL 150

Binds to the 23S rRNA.

Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) (taxid: 349102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
240849124	293	39S ribosomal protein L15, mitochondrial	0.914	0.617	0.647	2e-70
156544155	296	PREDICTED: 39S ribosomal protein L15, mi	0.959	0.641	0.601	4e-65
383850353	294	PREDICTED: 39S ribosomal protein L15, mi	0.959	0.646	0.583	4e-64
307188222	296	39S ribosomal protein L15, mitochondrial	0.964	0.645	0.585	7e-63
357605213	294	putative 39S ribosomal protein L15, mito	0.979	0.659	0.565	1e-62
340712503	300	PREDICTED: 39S ribosomal protein L15, mi	0.959	0.633	0.574	1e-62
350399841	300	PREDICTED: 39S ribosomal protein L15, mi	0.959	0.633	0.574	1e-62
380016944	293	PREDICTED: 39S ribosomal protein L15, mi	0.959	0.648	0.564	7e-62
346468539	293	hypothetical protein [Amblyomma maculatu	0.904	0.610	0.6	9e-62
241105601	293	ribosomal protein L15, putative [Ixodes	0.914	0.617	0.584	3e-61

>gi|240849124|ref|NP_001155525.1| 39S ribosomal protein L15, mitochondrial-like [Acyrthosiphon pisum] gi|239789736|dbj|BAH71471.1| ACYPI003384 [Acyrthosiphon pisum]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/207 (64%), Positives = 151/207 (72%), Gaps = 26/207 (12%)

Query: 18  RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK 77
           +RQYPPLSL  LQK ID NRID SKPIDL+ LCNTGLY   P   H+GVNL DEGADNFK
Sbjct: 87  KRQYPPLSLTTLQKMIDLNRIDISKPIDLSVLCNTGLYNINPEDKHFGVNLIDEGADNFK 146

Query: 78  AKINIEVQWTSEPVIAAIERNG--------------------------EAIPLRFQPPQD 111
           AKIN+EVQW SEP IAAIERNG                          EAIP R  PP D
Sbjct: 147 AKINVEVQWASEPTIAAIERNGGVITTSFFDVNSLFILINPKKFFQRGEAIPRRMIPPDD 206

Query: 112 AILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGL 171
           AILYYS+  +RGYLADPE+ISW+RF LAQKYGY LP+IE DPD++ML  RKD RQ+FYGL
Sbjct: 207 AILYYSSAANRGYLADPEKISWERFVLAQKYGYKLPKIEDDPDYDMLVSRKDQRQIFYGL 266

Query: 172 EPGWVVNVIDKMILKPKDPELIEYYKS 198
           EPGWVVN+ DK+ILKP DP+L E+Y+S
Sbjct: 267 EPGWVVNLKDKVILKPIDPQLKEFYRS 293

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544155|ref|XP_001606134.1| PREDICTED: 39S ribosomal protein L15, mitochondrial-like [Nasonia vitripennis]

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 150/216 (69%), Gaps = 26/216 (12%)

Query: 9   QPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNL 68
           +P + G   RRQYPP+SL QLQ  IDTNRID SKPIDL  L NTG+   +P   HYG++L
Sbjct: 81  EPYYKGHHLRRQYPPMSLEQLQLLIDTNRIDTSKPIDLTTLVNTGIIPVKPDWKHYGIHL 140

Query: 69  TDEGADNFKAKINIEVQWTSEPVIAAIERNG--------------------------EAI 102
           TDEGAD FK KINIEVQWTSEPVIAAIERNG                          E I
Sbjct: 141 TDEGADLFKTKINIEVQWTSEPVIAAIERNGGVIRTAFYDMNSVYAAVDPERHFKRGEPI 200

Query: 103 PLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRK 162
           P R  PP D + YYS+ E+RGYLADPE+IS +R ALAQKYGY LP+IE DPD++ML+ RK
Sbjct: 201 PRRMLPPADCLEYYSSAETRGYLADPEKISEERLALAQKYGYELPKIEDDPDYDMLNARK 260

Query: 163 DPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           DPRQ+FYGLEPGWV+++ DK ILKPK   L EYY S
Sbjct: 261 DPRQIFYGLEPGWVISLKDKAILKPKADYLKEYYTS 296

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850353|ref|XP_003700760.1| PREDICTED: 39S ribosomal protein L15, mitochondrial-like [Megachile rotundata]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 126/216 (58%), Positives = 151/216 (69%), Gaps = 26/216 (12%)

Query: 9   QPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNL 68
           +P + G   RR+YPPLSL QLQ +IDTNR+D SKPIDL ++ NTGLYTF+    H GV+L
Sbjct: 79  EPYYKGHHLRREYPPLSLNQLQMYIDTNRLDSSKPIDLVSIINTGLYTFKIEWKHAGVHL 138

Query: 69  TDEGADNFKAKINIEVQWTSEPVIAAIERN--------------------------GEAI 102
           TDEGADNFKAK+NIEVQW SEPVIAAIERN                          GE I
Sbjct: 139 TDEGADNFKAKVNIEVQWASEPVIAAIERNGGTITTAYYDPHCLFAINDVDRFFTTGEPI 198

Query: 103 PLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRK 162
           P R  PP D + YY +  +RGYLA+PE+IS +R  L+QKYGY LP+IE DPD+EML+ RK
Sbjct: 199 PRRLMPPTDCLEYYMSAATRGYLANPEEISKERLVLSQKYGYELPKIEDDPDYEMLNQRK 258

Query: 163 DPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           DPRQ+FYGLEPGWV+++ DK ILKPK   L E+Y S
Sbjct: 259 DPRQLFYGLEPGWVISLKDKAILKPKAEYLKEFYTS 294

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188222|gb|EFN73054.1| 39S ribosomal protein L15, mitochondrial [Camponotus floridanus]

 Score =  245 bits (625), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 127/217 (58%), Positives = 146/217 (67%), Gaps = 26/217 (11%)

Query: 8   SQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVN 67
           ++P + G   RR+YPPLSL +LQ  ID NR+D +KPIDL  L NT LY     H H GV+
Sbjct: 80  NEPYYRGHHLRREYPPLSLHKLQMLIDLNRLDITKPIDLITLLNTKLYHINVNHKHAGVH 139

Query: 68  LTDEGADNFKAKINIEVQWTSEPVIAAIERNG--------------------------EA 101
           LTDEGA  FKAKINIEVQW SEPVIAAIERNG                          E 
Sbjct: 140 LTDEGAHCFKAKINIEVQWASEPVIAAIERNGGIITTAYYDVHSLHAMCDTEQFFSKGEP 199

Query: 102 IPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMR 161
           IP RF PP D + YYS+  +RGYLADPE++S +R  LAQKYGY LP+IE DPD+EML  R
Sbjct: 200 IPRRFLPPDDCLEYYSSATTRGYLADPEKVSQERLVLAQKYGYELPKIEDDPDYEMLCER 259

Query: 162 KDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           KDPRQ+FYGLEPGWVVNV DK+ILKPK   L E+Y S
Sbjct: 260 KDPRQLFYGLEPGWVVNVPDKVILKPKADYLKEFYTS 296

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605213|gb|EHJ64516.1| putative 39S ribosomal protein L15, mitochondrial [Danaus plexippus]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/223 (56%), Positives = 149/223 (66%), Gaps = 29/223 (13%)

Query: 5   LYLSQP---LFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFH 61
            YL  P    + G   RR+YPP+SLLQLQK IDT+R+D  KPID+A++  +GLY F P  
Sbjct: 72  FYLRMPHENYYKGHHHRREYPPMSLLQLQKLIDTDRLDTDKPIDIASIVKSGLYNFFPDQ 131

Query: 62  NHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNG---------------------- 99
            H+G+NLTDEGAD F AKINIEVQW SE VIAAIE+NG                      
Sbjct: 132 KHFGLNLTDEGADIFAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLLLLKNPKKF 191

Query: 100 ----EAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDF 155
               +AIP R  PP DAI YY++ E RGYLADPE+IS  R  LAQKYGY LP +E D ++
Sbjct: 192 FESGQAIPRRMIPPPDAIEYYTSAEMRGYLADPEKISEDRLRLAQKYGYELPILENDSNY 251

Query: 156 EMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
            ML  RKDPRQ+FYGLEPGWVVN+ DK ILKPKD EL+ +Y S
Sbjct: 252 SMLCERKDPRQIFYGLEPGWVVNLKDKCILKPKDEELLRFYAS 294

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712503|ref|XP_003394798.1| PREDICTED: 39S ribosomal protein L15, mitochondrial-like [Bombus terrestris]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/216 (57%), Positives = 149/216 (68%), Gaps = 26/216 (12%)

Query: 9   QPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNL 68
           +P + G   RR+YPPLSL QLQ +IDTNR+D SKPIDL ++ NTGLY  +    H GV+L
Sbjct: 85  EPYYKGHHLRREYPPLSLQQLQLYIDTNRVDSSKPIDLVSIINTGLYDLKVEWKHAGVHL 144

Query: 69  TDEGADNFKAKINIEVQWTSEPVIAAIERNG--------------------------EAI 102
           TDEGADNFKAK+NIEVQW SEPVIAAIERNG                          E I
Sbjct: 145 TDEGADNFKAKVNIEVQWASEPVIAAIERNGGTITTAYYDTHCLHAIKDIDRFFTTGEPI 204

Query: 103 PLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRK 162
           P R  PP D + YY + E+RGYLA+PE+IS +R  L+QKYGY LP+IE DP+++ML  RK
Sbjct: 205 PRRLLPPTDCLEYYMSAETRGYLANPEEISRERLVLSQKYGYELPKIEDDPNYKMLVQRK 264

Query: 163 DPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           DPRQ+FYGLEPGWVV++ DK ILKPK   L E+Y S
Sbjct: 265 DPRQLFYGLEPGWVVSLKDKAILKPKADYLKEFYSS 300

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399841|ref|XP_003485656.1| PREDICTED: 39S ribosomal protein L15, mitochondrial-like [Bombus impatiens]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/216 (57%), Positives = 149/216 (68%), Gaps = 26/216 (12%)

Query: 9   QPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNL 68
           +P + G   RR+YPPLSL QLQ +IDTNR+D SKPIDL ++ NTGLY  +    H GV+L
Sbjct: 85  EPYYKGHHLRREYPPLSLQQLQLYIDTNRVDSSKPIDLVSIINTGLYDLKVEWKHAGVHL 144

Query: 69  TDEGADNFKAKINIEVQWTSEPVIAAIERN--------------------------GEAI 102
           TDEGADNFKAK+NIEVQW SEPVIAAIERN                          GE I
Sbjct: 145 TDEGADNFKAKVNIEVQWASEPVIAAIERNGGTITTAYYDTRCLHAIKDVDKFFTTGEPI 204

Query: 103 PLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRK 162
           P R  PP D + YY + E+RGYLA+PE+IS +R  L+QKYGY LP+IE DP+++ML  RK
Sbjct: 205 PRRLLPPTDCLEYYMSAETRGYLANPEEISRERLVLSQKYGYELPKIEDDPNYKMLVQRK 264

Query: 163 DPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           DPRQ+FYGLEPGWVV++ DK ILKPK   L E+Y S
Sbjct: 265 DPRQLFYGLEPGWVVSLKDKAILKPKADYLKEFYTS 300

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016944|ref|XP_003692427.1| PREDICTED: 39S ribosomal protein L15, mitochondrial-like [Apis florea]

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 122/216 (56%), Positives = 148/216 (68%), Gaps = 26/216 (12%)

Query: 9   QPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNL 68
           +P + G   RR+YPPLSL +LQ +IDTNRIDPSKPID  ++ NTGLY F+    H G++L
Sbjct: 78  EPYYKGHHLRREYPPLSLQKLQLYIDTNRIDPSKPIDFVSIINTGLYDFKIEWKHAGIHL 137

Query: 69  TDEGADNFKAKINIEVQWTSEPVIAAIERN--------------------------GEAI 102
           TDEG+DNFKAK+NIEVQW SEPVIAAIERN                          GE I
Sbjct: 138 TDEGSDNFKAKVNIEVQWASEPVIAAIERNGGTITTAYYDTNCLFAMQDVERFFTTGEPI 197

Query: 103 PLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRK 162
           P R  PP D + YY +  +RGYLA+PE+IS +R  L+QKYGY LP+IE DPD+EML  RK
Sbjct: 198 PRRLLPPTDCLEYYMSAATRGYLANPEEISHERLILSQKYGYELPKIENDPDYEMLVQRK 257

Query: 163 DPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
           DPRQ+FYGL PGWVV++ DK ILKPK   L ++Y S
Sbjct: 258 DPRQLFYGLSPGWVVSLKDKAILKPKAEYLKKFYSS 293

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468539|gb|AEO34114.1| hypothetical protein [Amblyomma maculatum]

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 142/205 (69%), Gaps = 26/205 (12%)

Query: 18  RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK 77
           RRQYPPLSL QLQ F+D  RID ++PIDLAALCNT LY   P   H+GV+LT EG D+FK
Sbjct: 87  RRQYPPLSLGQLQLFVDLGRIDTTRPIDLAALCNTKLYFLNPSDRHFGVHLTAEGIDSFK 146

Query: 78  AKINIEVQWTSEPVIAAIERNG--------------------------EAIPLRFQPPQD 111
           AK+NIEVQ  SEPVIAA+ERNG                          + IP R  PP+D
Sbjct: 147 AKVNIEVQHASEPVIAAVERNGGTITTAYFDIDSVTALMNPEKFFKLGQPIPKRKLPPED 206

Query: 112 AILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGL 171
           AI YYS+P  RGYLADP +++  R+ LAQKYGY LP +EKDP  EML  RKDPRQVFYGL
Sbjct: 207 AIRYYSDPAFRGYLADPREVAKHRYLLAQKYGYVLPNLEKDPSGEMLMERKDPRQVFYGL 266

Query: 172 EPGWVVNVIDKMILKPKDPELIEYY 196
           EPGWVVN+ DK+IL+P DPE  EYY
Sbjct: 267 EPGWVVNLRDKVILRPTDPEYKEYY 291

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241105601|ref|XP_002410016.1| ribosomal protein L15, putative [Ixodes scapularis] gi|215492858|gb|EEC02499.1| ribosomal protein L15, putative [Ixodes scapularis]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 138/207 (66%), Gaps = 26/207 (12%)

Query: 18  RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK 77
           RRQYPPLSL QLQ  ID  R+DP  PIDLA LCNT +Y   P   H+GV LT EG DNFK
Sbjct: 87  RRQYPPLSLKQLQLLIDLGRVDPKLPIDLATLCNTKIYDITPMERHFGVQLTAEGIDNFK 146

Query: 78  AKINIEVQWTSEPVIAAIERNG--------------------------EAIPLRFQPPQD 111
           AK+NIEVQ   EPVIAAIERNG                          + IP R  PP+D
Sbjct: 147 AKVNIEVQHAKEPVIAAIERNGGVITTAYFDINSVTALRNPEAFFKTGKPIPKRRLPPED 206

Query: 112 AILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGL 171
           AI YYS+P  RGYLADP +++ +RF LAQKYGY LP++  DPD EML+ RKDP QVFYGL
Sbjct: 207 AIRYYSDPAMRGYLADPAEVAKERFLLAQKYGYELPDVASDPDAEMLTARKDPLQVFYGL 266

Query: 172 EPGWVVNVIDKMILKPKDPELIEYYKS 198
           +PGWVVN+ DK IL+P DPE  EYY S
Sbjct: 267 QPGWVVNLRDKCILRPTDPEYQEYYNS 293

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
UNIPROTKB|F1NNI7	297	MRPL15 "39S ribosomal protein	0.505	0.336	0.58	2.3e-54
UNIPROTKB|Q5ZKT8	297	MRPL15 "39S ribosomal protein	0.505	0.336	0.58	6.1e-54
MGI|MGI:1351639	295	Mrpl15 "mitochondrial ribosoma	0.505	0.338	0.56	1.6e-51
RGD|1304796	295	Mrpl15 "mitochondrial ribosoma	0.505	0.338	0.55	1.6e-51
ZFIN|ZDB-GENE-040801-168	296	mrpl15 "mitochondrial ribosoma	0.505	0.337	0.55	1.4e-50
WB|WBGene00022373	298	mrpl-15 [Caenorhabditis elegan	0.479	0.318	0.427	1.8e-31
FB|FBgn0036990	286	mRpL15 "mitochondrial ribosoma	0.454	0.314	0.633	1.2e-28
UNIPROTKB|Q0VC21	297	MRPL15 "39S ribosomal protein	0.505	0.336	0.58	2.4e-28
UNIPROTKB|F1RSH0	296	MRPL15 "Uncharacterized protei	0.505	0.337	0.57	5e-28
UNIPROTKB|F1PQQ5	292	MRPL15 "Uncharacterized protei	0.505	0.342	0.57	6.4e-28

UNIPROTKB|F1NNI7 MRPL15 "39S ribosomal protein L15, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 331 (121.6 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
 Identities = 58/100 (58%), Positives = 76/100 (76%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             G+ IP R  PP+D + YY++  +RGYLADP +++  R  LA+KYGYTLP+I KD  F+ML
Sbjct:   198 GQPIPKRMLPPEDLVRYYTDASNRGYLADPSKVAEARLELAKKYGYTLPDITKDELFKML 257

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
             S RKDPRQ+F+GL PGW+VN+ DK ILKP D  L++YY S
Sbjct:   258 STRKDPRQIFFGLAPGWIVNMADKKILKPTDERLLKYYSS 297

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q5ZKT8 MRPL15 "39S ribosomal protein L15, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 331 (121.6 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 58/100 (58%), Positives = 76/100 (76%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             G+ IP R  PP+D + YY++  +RGYLADP +++  R  LA+KYGYTLP+I KD  F+ML
Sbjct:   198 GQPIPKRMLPPEDLVRYYTDASNRGYLADPSKVAEARLELAKKYGYTLPDITKDELFKML 257

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
             S RKDPRQ+F+GL PGW+VN+ DK ILKP D  L++YY S
Sbjct:   258 STRKDPRQIFFGLAPGWIVNMADKKILKPTDERLLKYYSS 297

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1351639 Mrpl15 "mitochondrial ribosomal protein L15" [Mus musculus (taxid:10090)]

 Score = 309 (113.8 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
 Identities = 56/100 (56%), Positives = 71/100 (71%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             G+ IP R  PP+  + YY++ ++RGYLADP +    R  LA K+GY LP+I KD  F ML
Sbjct:   196 GQPIPKRMLPPESLVPYYTDAKNRGYLADPAKFPEARLELAMKFGYVLPDITKDELFRML 255

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
             S RKDPRQ+F+GL PGWVVN+ DK ILKP D  L++YY S
Sbjct:   256 SARKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYSS 295

GO:0000002 "mitochondrial genome maintenance" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1304796 Mrpl15 "mitochondrial ribosomal protein L15" [Rattus norvegicus (taxid:10116)]

 Score = 309 (113.8 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
 Identities = 55/100 (55%), Positives = 71/100 (71%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             G+ IP R  PP+  + YY++ ++RGYLADP +    R  LA KYGY LP++ KD  F ML
Sbjct:   196 GQPIPKRMLPPEALVPYYTDAKNRGYLADPAKFPEARLELAMKYGYVLPDVTKDELFRML 255

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
             S RKDPRQ+F+GL PGW+VN+ DK ILKP D  L++YY S
Sbjct:   256 STRKDPRQIFFGLAPGWIVNMADKKILKPTDENLLKYYSS 295

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

ZFIN|ZDB-GENE-040801-168 mrpl15 "mitochondrial ribosomal protein L15" [Danio rerio (taxid:7955)]

 Score = 307 (113.1 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
 Identities = 55/100 (55%), Positives = 74/100 (74%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             GE IP R  P +D + YY++  +RGYLADP++I   R  LA+KYGY++P+I KD  FEML
Sbjct:   197 GEPIPKRLFPGEDLLPYYTDANNRGYLADPDKIQTARMDLAKKYGYSIPDISKDTLFEML 256

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
               RK+PR +F+GL PGWVVN+ DK ILKP D ++++YY S
Sbjct:   257 VQRKNPRHIFFGLSPGWVVNMADKKILKPTDDKVLQYYGS 296

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

WB|WBGene00022373 mrpl-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 205 (77.2 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
 Identities = 41/96 (42%), Positives = 61/96 (63%)

Query:     5 LYLSQPLFTG-ADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNH 63
             +Y  + LF    + RR+Y PLSL++L + ID   I+P +PID++ LC T  +   P    
Sbjct:    76 MYPGEKLFNADINTRREYIPLSLVELARLIDLGWINPRQPIDISTLCTTQKFQINPKMRQ 135

Query:    64 YGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNG 99
             YG +LT+EGAD+F   I+IEVQ+ +   IAA+E+ G
Sbjct:   136 YGFDLTEEGADSFPYSIDIEVQYATPSAIAAVEKAG 171

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

FB|FBgn0036990 mRpL15 "mitochondrial ribosomal protein L15" [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 57/90 (63%), Positives = 72/90 (80%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             G  IP R  PPQDA+ YY++P++RGYLA+PE IS  R  LAQKYGY LP+IE+D  +EML
Sbjct:   196 GVPIPRRMLPPQDAVDYYTDPKNRGYLANPEAISQDRLVLAQKYGYQLPKIEEDSAYEML 255

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPK 188
             +  KDPRQVFYGLEPGW++N++DK I+K K
Sbjct:   256 TTAKDPRQVFYGLEPGWLINIVDKTIIKRK 285

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|Q0VC21 MRPL15 "39S ribosomal protein L15, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 58/100 (58%), Positives = 73/100 (73%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             G+ IP R  PP+  + YY++  +RGYLADP +    R  LA+KYGY LP+I KD  F+ML
Sbjct:   198 GQPIPKRMLPPEALVPYYTDARNRGYLADPARFPEARLELAKKYGYILPDITKDELFKML 257

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
             S RKDPRQ+F+GL PGWVVN+ DK ILKP D +L+EYY S
Sbjct:   258 SSRKDPRQIFFGLAPGWVVNMADKKILKPTDEKLLEYYSS 297

GO:0005739 "mitochondrion" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1RSH0 MRPL15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 57/100 (57%), Positives = 73/100 (73%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             G+ IP R  PP+  + YY++ ++RGYLADP +    R  LA+KYGY LP+I KD  F+ML
Sbjct:   197 GQPIPKRMLPPEALVPYYTDAKNRGYLADPARFPEARLELARKYGYVLPDITKDELFKML 256

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
             S RKDPRQ+F+GL PGWVVN+ DK ILKP D  L++YY S
Sbjct:   257 STRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYSS 296

GO:0005739 "mitochondrion" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1PQQ5 MRPL15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 57/100 (57%), Positives = 73/100 (73%)

Query:    99 GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFEML 158
             G+ IP R  PP+  + YY++ ++RGYLADP +    R  LA+KYGY LP+I KD  F+ML
Sbjct:   193 GQPIPKRMLPPEALVPYYTDAKNRGYLADPAKFPEARLELAKKYGYILPDITKDELFKML 252

Query:   159 SMRKDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEYYKS 198
             S RKDPRQ+F+GL PGWVVN+ DK ILKP D  L++YY S
Sbjct:   253 STRKDPRQIFFGLAPGWVVNMTDKKILKPTDENLLKYYSS 292

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DGM3	RM15_DANRE	No assigned EC number	0.4975	0.9040	0.6047	yes	N/A
Q9P015	RM15_HUMAN	No assigned EC number	0.4976	0.9343	0.625	yes	N/A
Q0VC21	RM15_BOVIN	No assigned EC number	0.5071	0.9343	0.6228	yes	N/A
Q9CPR5	RM15_MOUSE	No assigned EC number	0.4928	0.9343	0.6271	yes	N/A
Q5ZKT8	RM15_CHICK	No assigned EC number	0.4932	0.9797	0.6531	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG0846|consensus	274		100.0
PRK05592	146	rplO 50S ribosomal protein L15; Reviewed	99.84
TIGR01071	145	rplO_bact ribosomal protein L15, bacterial/organel	99.83
PF00828	129	Ribosomal_L18e: Ribosomal protein L18e/L15; InterP	99.7
COG0200	152	RplO Ribosomal protein L15 [Translation, ribosomal	99.65
PRK06419	148	rpl15p 50S ribosomal protein L15P; Reviewed	99.62
PTZ00160	147	60S ribosomal protein L27a; Provisional	99.26
PRK04005	111	50S ribosomal protein L18e; Provisional	99.0
COG1727	122	RPL18A Ribosomal protein L18E [Translation, riboso	97.85
PTZ00469	187	60S ribosomal subunit protein L18; Provisional	97.19
PTZ00195	198	60S ribosomal protein L18; Provisional	96.73
KOG1742|consensus	147		91.18

>KOG0846|consensus

Probab=100.00  E-value=1e-50  Score=351.04  Aligned_cols=170  Identities=55%  Similarity=0.872  Sum_probs=162.7

Q ss_pred             ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEE
Q psy6392           5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEV   84 (198)
Q Consensus         5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev   84 (198)
                      ||||+||.  |.++++|.+++|.+||+|||.||||++++|||++||++|+|.  +..+++||+|+++|+++|+.+|+|||
T Consensus        79 r~Pk~~~~--~~~~r~~~pl~L~rlq~lID~grid~~q~Idm~tL~~~g~i~--p~~~eyGv~L~~~G~d~~~~~i~iEv  154 (274)
T KOG0846|consen   79 RFPKFGFG--NGGRRQYLPLSLGRLQKLIDTGRIDPSQPIDMKTLKDSGLIN--PKGREYGVQLTADGADEFKAKINIEV  154 (274)
T ss_pred             hccccccc--ccccccCCcccHHHHHHHHHhcCCCccCceeHHHHHhccCCC--ccccccCceeeccCCccccceEEEEe
Confidence            79999999  889999999999999999999999999999999999999754  34689999999999999999999999


Q ss_pred             eecCHHHHHHHHHcC--------------------------CCCCCCCCCCccccccccCcCCCCccCCccchhHHHHHH
Q psy6392          85 QWTSEPVIAAIERNG--------------------------EAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFAL  138 (198)
Q Consensus        85 ~~aS~sAieaIE~aG--------------------------~pip~r~~p~~d~i~yY~~~~~RGYLa~~~~i~~~r~~~  138 (198)
                      ++||..||++||+||                          .|+|.|++||+++++||||+++||||+.++.+..+|+.+
T Consensus       155 s~aS~~AiaaIEkaGG~vtt~yy~p~~Lra~lnP~~wf~~g~~vP~~~rPp~~~idyYtd~k~rGyl~~~~~~~~e~~~~  234 (274)
T KOG0846|consen  155 SRASVQAIAAIEKAGGSVTTAYYDPLSLRAHLNPKKWFEPGSPVPKRARPPQKDIDYYTDPKNRGYLAAPEAKTSERAAS  234 (274)
T ss_pred             hhhhHHHHHHHHhcCCeEEEEEEcchhhhhhcCchhhcccCCcCccccCCChhhhhhhhchhhcccccCccccccchhHH
Confidence            999999999999999                          579999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCchhHHhhhccCCCcccccCCCCcceeecCcceeecCCC
Q psy6392         139 AQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILKPKD  189 (198)
Q Consensus       139 a~k~gy~lp~~~~~~~~~~l~~~k~p~q~f~gl~pg~vv~l~d~~~~~p~~  189 (198)
                      ||+|||++|.+++|..||||    ||       +|||||||+|++|+++++
T Consensus       235 Aq~~gy~~p~~~k~s~~~~~----dp-------~~gwv~~~~d~kv~~~k~  274 (274)
T KOG0846|consen  235 AQKYGYELPVKPKDSALEML----DP-------EPGWVVNLADKKVFKTKN  274 (274)
T ss_pred             HhhcCCcCCCCchhhhhhcc----CC-------CCCceeeeccceeeecCC
Confidence            99999999999999999999    66       899999999999999986

>PRK05592 rplO 50S ribosomal protein L15; Reviewed

Probab=99.84  E-value=4.9e-21  Score=155.28  Aligned_cols=85  Identities=24%  Similarity=0.312  Sum_probs=76.8

Q ss_pred             cccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEE
Q psy6392           4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIE   83 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Ie   83 (198)
                      -||||+||+  +.++++|.+|||++|+.      ++++++||+++|+++|+|+.    ..++|||||+|  +|+++|+|+
T Consensus        59 rrlPk~Gf~--~~~~~~y~~VNL~~L~~------~~~~~~I~~~~L~~~gli~~----~~~~vKvLg~G--~l~~~i~I~  124 (146)
T PRK05592         59 RRLPKRGFT--NIFRKEYAVVNLGDLNK------FEEGTEVTLEALKAAGLIRK----NIKGVKVLGNG--ELTKKLTVK  124 (146)
T ss_pred             EEcccCCcC--CCCcceEEEEeHHHhhc------cCCCCeECHHHHHHCCcccC----CCcceEEEecC--ccccCEEEE
Confidence            379999999  67899999999999994      56678999999999999986    34689999999  999999999


Q ss_pred             EeecCHHHHHHHHHcCCCC
Q psy6392          84 VQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        84 v~~aS~sAieaIE~aG~pi  102 (198)
                      |++||++|+++||+||+.+
T Consensus       125 a~~~S~sA~e~IE~aGG~v  143 (146)
T PRK05592        125 AHKFSKSAKEAIEAAGGKV  143 (146)
T ss_pred             EEccCHHHHHHHHHcCCEE
Confidence            9999999999999999654

>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle

Probab=99.83  E-value=1.3e-20  Score=152.21  Aligned_cols=87  Identities=20%  Similarity=0.273  Sum_probs=76.8

Q ss_pred             cccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEE
Q psy6392           4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIE   83 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Ie   83 (198)
                      -||||+||++.+ ++.+|.+|||++|+++++.|     ++||+++|+++++|..    ....|||||+|  +|+.+|+|+
T Consensus        58 rrlPK~GF~~~~-~~~~~~~VNL~~L~~~~~~g-----~~i~~~~L~~~gli~~----~~~~vKvLg~G--~l~~~l~I~  125 (145)
T TIGR01071        58 RRLPKRGFSNKR-FKKEYAEVNLGKLAKLFPNG-----EVVTLETLKEKGLITK----KIKFVKVLGNG--KLTKPLTVK  125 (145)
T ss_pred             EECCCCCCCCcc-cCcceeEEEHHHHhhhhhcC-----CEecHHHHhhCccCcC----CCCceEEeCCC--CcCcCEEEE
Confidence            379999999532 78999999999999998876     6899999999999975    22369999999  899999999


Q ss_pred             EeecCHHHHHHHHHcCCCC
Q psy6392          84 VQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        84 v~~aS~sAieaIE~aG~pi  102 (198)
                      |++||++|+++||+||+.+
T Consensus       126 a~~~S~sA~ekIE~aGG~v  144 (145)
T TIGR01071       126 AHRVSKSAKAAIEAAGGSV  144 (145)
T ss_pred             EEEECHHHHHHHHHcCCEE
Confidence            9999999999999999654

>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.70  E-value=2.2e-18  Score=135.66  Aligned_cols=87  Identities=26%  Similarity=0.386  Sum_probs=75.9

Q ss_pred             ccCCCCCCCCCC--CCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEE
Q psy6392           5 LYLSQPLFTGAD--QRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINI   82 (198)
Q Consensus         5 RlPKrGF~~~~~--~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~I   82 (198)
                      ||||+||++.+.  .+..|.+|||++|++||+.++.+.. ++|.+.+++.+++.       .++||||+|  +|+.||+|
T Consensus        37 r~pK~Gf~~~~~~~~~~~~~~vnL~~L~~~i~~~~~~~~-~~~~~~~~~~~~~~-------~~~KvLg~G--~l~~~l~I  106 (129)
T PF00828_consen   37 RLPKRGFNNPHLRKNRREYPPVNLSKLQELIEKLKIDGT-EIDGKILVDAGLIK-------GYVKVLGKG--ELTKPLTI  106 (129)
T ss_dssp             HSSSSSHHHCCHCSGTCCCEEEEHHHHHHHTTTSSSSSC-ECTTSEEEECCEES-------SEEEEESSS--SSSSSEEE
T ss_pred             ccCcccccccccccCcceeEeeeHHHHHHHHHhcccccc-ccCCceeeeccccc-------cceeeeccC--CcccceEE
Confidence            699999996443  3469999999999999998877755 78888999988762       479999999  99999999


Q ss_pred             EEeecCHHHHHHHHHcCCC
Q psy6392          83 EVQWTSEPVIAAIERNGEA  101 (198)
Q Consensus        83 ev~~aS~sAieaIE~aG~p  101 (198)
                      +|++||++|+++||+||+.
T Consensus       107 ~a~~~S~~A~ekIe~aGG~  125 (129)
T PF00828_consen  107 KAHRFSKSAKEKIEAAGGE  125 (129)
T ss_dssp             EESEETHHHHHHHHHTSEE
T ss_pred             EEEecCHHHHHHHHHcCCE
Confidence            9999999999999999953

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....

>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=2.9e-16  Score=128.39  Aligned_cols=87  Identities=17%  Similarity=0.274  Sum_probs=74.3

Q ss_pred             cccCCCCCCCCCCCCc-ccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEE
Q psy6392           4 FLYLSQPLFTGADQRR-QYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINI   82 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r~-~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~I   82 (198)
                      .||||+||++ ..+.+ +|.+|||++|..+++.+     .+||+.+|.+.++|..    ...+|||||+|  +|++++.|
T Consensus        60 rrlpK~GF~~-~~~~~~~~~~vn~~~l~~~~~~~-----~~v~~~~l~~~~~i~~----~~~~vKvLg~G--~l~~~~~~  127 (152)
T COG0200          60 RRLPKRGFTN-SKFKKVEYAVVNLGKLAELLPEG-----EEVTLASLKAAGVIRK----LKDLVKVLGNG--KLTKAVPV  127 (152)
T ss_pred             hhcCCCCCcc-ccccccceeEEEHHHhhhhcccc-----ccccHHHHhhCCeEec----cccccEEeccC--eeccceeE
Confidence            5899999995 35566 99999999999876554     7899999999999986    45679999999  99977777


Q ss_pred             EEe-ecCHHHHHHHHHcCCCC
Q psy6392          83 EVQ-WTSEPVIAAIERNGEAI  102 (198)
Q Consensus        83 ev~-~aS~sAieaIE~aG~pi  102 (198)
                      +|. .||++|+++||+||+.+
T Consensus       128 ~v~a~~S~~A~ekIe~aGG~v  148 (152)
T COG0200         128 KVKAKASKSAIEKIEAAGGKV  148 (152)
T ss_pred             EEEeeeCHHHHHHHHHcCCEE
Confidence            777 99999999999999643

>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed

Probab=99.62  E-value=7.2e-16  Score=125.37  Aligned_cols=85  Identities=16%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             CcccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCC-----CCC-CCcceEEeccccccc
Q psy6392           3 GFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFE-----PFH-NHYGVNLTDEGADNF   76 (198)
Q Consensus         3 ~~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~-----~~~-~k~gVKLLg~G~~~l   76 (198)
                      ...|||+||++++..+.+|.+|||++|+.+++             +|.+.|+++..     .+. ....+||||+|  ++
T Consensus        52 p~~fpK~GF~~~~~~~~~~~~INL~~L~~l~~-------------~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G--~l  116 (148)
T PRK06419         52 PDWYGKHGFKRPPKLIKEVSTINVGELDELAD-------------LLKAEGKAEEEDGKIVVDLTELGYDKVLGGG--KV  116 (148)
T ss_pred             CCCCCCCCccCCCcCcceeeeEEHHHHHHhHH-------------HHHHCCcccccCCcceeeeccCCceEEeCCC--cc
Confidence            34699999996444458999999999999873             13333333321     000 11359999999  99


Q ss_pred             ceeEEEEEeecCHHHHHHHHHcCCCC
Q psy6392          77 KAKINIEVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        77 ~~kI~Iev~~aS~sAieaIE~aG~pi  102 (198)
                      +.||+|+|++||++|+++||+||+.+
T Consensus       117 ~~pl~Vka~~fS~~A~ekIe~aGG~v  142 (148)
T PRK06419        117 TRPLVIKADAFSEKAIEKIEAAGGEV  142 (148)
T ss_pred             CcCEEEEEeccCHHHHHHHHHcCCEE
Confidence            99999999999999999999999653

>PTZ00160 60S ribosomal protein L27a; Provisional

Probab=99.26  E-value=1e-11  Score=101.20  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=62.0

Q ss_pred             CcccCCCCCCCCCCCCccc--ceeehhhHHhHHhh-CCCCCCCccCHHHHHHCCCCcCCCCCCCc-ceEEeccccccc-c
Q psy6392           3 GFLYLSQPLFTGADQRRQY--PPLSLLQLQKFIDT-NRIDPSKPIDLAALCNTGLYTFEPFHNHY-GVNLTDEGADNF-K   77 (198)
Q Consensus         3 ~~RlPKrGF~~~~~~r~~y--~~INL~~Lq~~id~-Grid~~~~Idl~~L~~~Gli~~~~~~~k~-gVKLLg~G~~~l-~   77 (198)
                      ...++|+||++++..+.++  .+|||++|.++++. .+..      .  ..+.+-+.. ++..+. .+||||+|  ++ +
T Consensus        50 p~~fGK~Gfr~~~~~~~~~~~~~INl~~L~~lv~~~~~~~------~--a~~~~~~~v-IDl~~~g~~KVLG~G--~l~~  118 (147)
T PTZ00160         50 PGYFGKVGMRHFHLKKNKYYCPTINVDKLWSLVPEETRYK------Y--AKKGDKAPV-IDVTKAGYFKVLGKG--HLPK  118 (147)
T ss_pred             CCccCCCCccCCccccccccCceeEHHHHHHHhHHHHHHh------h--hhccCCceE-EEeeccCceEEecCC--eEcC
Confidence            4578999999766666777  89999999998754 1110      0  000010000 011223 48999999  99 7


Q ss_pred             eeEEEEEeecCHHHHHHHHHcCCC
Q psy6392          78 AKINIEVQWTSEPVIAAIERNGEA  101 (198)
Q Consensus        78 ~kI~Iev~~aS~sAieaIE~aG~p  101 (198)
                      .|++|++..||++|+++||++|+.
T Consensus       119 ~~v~Vka~~~Sk~A~ekIe~aGG~  142 (147)
T PTZ00160        119 QPVIVKARYFSKKAEKKIKAVGGA  142 (147)
T ss_pred             ccEEEEEeecCHHHHHHHHHcCCE
Confidence            799999999999999999999954

>PRK04005 50S ribosomal protein L18e; Provisional

Probab=99.00  E-value=3.2e-10  Score=88.63  Aligned_cols=69  Identities=16%  Similarity=0.223  Sum_probs=54.5

Q ss_pred             ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEE
Q psy6392           5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEV   84 (198)
Q Consensus         5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev   84 (198)
                      |++|| +.+   .+.+|.+|||++|+.+.+.|     .+|+                  .++||||+|  +++++++|++
T Consensus        23 ~v~~r-l~~---~r~~y~vVNL~~L~~~~~~~-----~vv~------------------~~~KVLg~G--~l~k~l~V~a   73 (111)
T PRK04005         23 DVAER-LEK---PRRRRAEVNLSKINRYAKEG-----DTVV------------------VPGKVLGSG--KLDHKVTVAA   73 (111)
T ss_pred             HHHHH-HhC---CCCccceEEHHHHHhhccCC-----CEEE------------------EeeEEEcCc--eEcCCEEEEE
Confidence            45666 331   35799999999999764333     2221                  268999999  9999999999


Q ss_pred             eecCHHHHHHHHHcCCCC
Q psy6392          85 QWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        85 ~~aS~sAieaIE~aG~pi  102 (198)
                      +++|++|+++||++|+.+
T Consensus        74 ~~~Sk~A~ekIe~aGG~v   91 (111)
T PRK04005         74 LSFSETAKEKIEEAGGKA   91 (111)
T ss_pred             eecCHHHHHHHHHcCCEE
Confidence            999999999999999654

>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=1.9e-05  Score=62.64  Aligned_cols=59  Identities=14%  Similarity=0.319  Sum_probs=48.4

Q ss_pred             CcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEEeecCHHHHHHHHH
Q psy6392          18 RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIER   97 (198)
Q Consensus        18 r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev~~aS~sAieaIE~   97 (198)
                      ++.+.+|||++|+.+...|.     ++         +|.         =|+||.|  .+.++++|-+-+||++|.++|++
T Consensus        43 rr~ra~VnlsKI~r~ak~~d-----~v---------vVp---------GkVLg~g--~l~~kVtVaAl~FS~~A~~KI~~   97 (122)
T COG1727          43 RRNRAEVNVSKINRYAKEGD-----TV---------VVP---------GKVLGDG--KLDKKVTVAALRFSKTAREKIEE   97 (122)
T ss_pred             cccCCceeHHHHHhhcCCCC-----EE---------EEe---------eeEecCc--ccccceEEEEEecCHHHHHHHHH
Confidence            67889999999998765442     11         222         2899999  99999999999999999999999


Q ss_pred             cCCC
Q psy6392          98 NGEA  101 (198)
Q Consensus        98 aG~p  101 (198)
                      +|+.
T Consensus        98 aGGe  101 (122)
T COG1727          98 AGGE  101 (122)
T ss_pred             cCCe
Confidence            9954

>PTZ00469 60S ribosomal subunit protein L18; Provisional

Probab=97.19  E-value=0.00045  Score=58.62  Aligned_cols=60  Identities=23%  Similarity=0.354  Sum_probs=45.5

Q ss_pred             CcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccc--eeEEEEEeecCHHHHHHH
Q psy6392          18 RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK--AKINIEVQWTSEPVIAAI   95 (198)
Q Consensus        18 r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~--~kI~Iev~~aS~sAieaI   95 (198)
                      ++...+|||++|..+. .|+  +++++         +|-         =|||++|  .+.  .+++|-+-+||++|.++|
T Consensus        56 rrnr~pVnLSkI~r~~-~~k--e~~~~---------VVv---------GkVl~dg--rl~~vpkvtVaAL~fS~~Ar~kI  112 (187)
T PTZ00469         56 KRFRPPLSLSKLHRHM-ASY--PDDVA---------VVV---------GSITDDK--RLYDCKKLKVCALRFTETARKRI  112 (187)
T ss_pred             cccCCceeHHHHHHHh-ccC--CCCEE---------EEE---------eeEccCc--cccccCceEEEEEecCHHHHHHH
Confidence            5678899999998775 121  11111         111         1799999  888  899999999999999999


Q ss_pred             HHcCC
Q psy6392          96 ERNGE  100 (198)
Q Consensus        96 E~aG~  100 (198)
                      |+||+
T Consensus       113 ~~AGG  117 (187)
T PTZ00469        113 LDAGG  117 (187)
T ss_pred             HHhCC
Confidence            99993

>PTZ00195 60S ribosomal protein L18; Provisional

Probab=96.73  E-value=0.0032  Score=53.90  Aligned_cols=65  Identities=14%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             CcccceeehhhHHhHHhhCC--CCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccce--eEEEEEeecCHHHHH
Q psy6392          18 RRQYPPLSLLQLQKFIDTNR--IDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKA--KINIEVQWTSEPVIA   93 (198)
Q Consensus        18 r~~y~~INL~~Lq~~id~Gr--id~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~--kI~Iev~~aS~sAie   93 (198)
                      +....||||++|..+...|-  ..++.        +...+-      - -=+||++|  .+..  +++|-+-+||++|.+
T Consensus        56 r~nRppVsLSrI~r~~k~~d~~~~~~~--------~~k~~V------V-vGkVtdd~--rl~~vPkvtVaALrfS~tAr~  118 (198)
T PTZ00195         56 RSNRAPISLSRIAVVMKRKAVFTAKGK--------KAPIAV------V-VGDVLDDV--RMARIPAMRVCALRFSKSARQ  118 (198)
T ss_pred             cccCCceeHHHHHHHHhccccccccCC--------CCcEEE------E-EeeEcCCc--cccccCceEEEEEecCHHHHH
Confidence            56788999999998865431  00110        000100      0 11799999  9888  999999999999999


Q ss_pred             HHHHcC
Q psy6392          94 AIERNG   99 (198)
Q Consensus        94 aIE~aG   99 (198)
                      .|++||
T Consensus       119 rI~kAG  124 (198)
T PTZ00195        119 SIVAAG  124 (198)
T ss_pred             HHHHhC
Confidence            999999

>KOG1742|consensus

Probab=91.18  E-value=0.16  Score=41.61  Aligned_cols=75  Identities=16%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             ccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcc-eEEecccccccceeEEEEEeecCHHHHHHHHHc
Q psy6392          20 QYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYG-VNLTDEGADNFKAKINIEVQWTSEPVIAAIERN   98 (198)
Q Consensus        20 ~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~g-VKLLg~G~~~l~~kI~Iev~~aS~sAieaIE~a   98 (198)
                      -.++|||++|-.++..-.     -.+... +++|.... ++....| -|+||.|.--.+.||.+++-.+|..|.++|.++
T Consensus        67 ~~P~vnldkLWtlv~~~~-----~~~~~~-~k~g~aPv-idv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~~  139 (147)
T KOG1742|consen   67 FCPTVNLDKLWTLVREQT-----RVKAAK-NKTGAAPV-IDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKKA  139 (147)
T ss_pred             cCCcccHHHHHHhhhHHH-----HHHHhc-cCCCCCce-eeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHhc
Confidence            456799999976662200     000000 12222211 1112333 579999933335899999999999999999999


Q ss_pred             CCC
Q psy6392          99 GEA  101 (198)
Q Consensus        99 G~p  101 (198)
                      |+.
T Consensus       140 gg~  142 (147)
T KOG1742|consen  140 GGA  142 (147)
T ss_pred             Cce
Confidence            843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	99.84
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	99.84
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	99.79
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	99.79
3j21_L	147	50S ribosomal protein L15P; archaea, archaeal, KIN	99.76
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	99.69
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	99.64
3j21_P	120	50S ribosomal protein L18E; archaea, archaeal, KIN	99.59
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	99.43
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	99.38
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	99.26
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	99.21
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	99.12
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	98.93
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	98.89
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	98.85
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	98.82

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...

Probab=99.84  E-value=5.6e-22  Score=159.35  Aligned_cols=84  Identities=15%  Similarity=0.123  Sum_probs=75.1

Q ss_pred             cccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEE
Q psy6392           4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIE   83 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Ie   83 (198)
                      .||||+||+  |.++++|.+|||++||.|      + +++||+++|+++|+|+.    ..++|||||+|  +|+++|+|+
T Consensus        58 rRlPK~GF~--~~~~~~y~~VNL~~L~~~------~-~~~I~~~~L~~~glv~~----~~~~VKVLg~G--el~~~l~V~  122 (143)
T 3r8s_L           58 RRLPKFGFT--SRKAAITAEIRLSDLAKV------E-GGVVDLNTLKAANIIGI----QIEFAKVILAG--EVTTPVTVR  122 (143)
T ss_dssp             HHSCCCCCC--CSTGGGEEECCSSSSSCS------S-SSEEEHHHHGGGTSSCT----TCCEEECCCCS--CCCSCCEEE
T ss_pred             EEccccccC--CcccceeEEEEHHHhhhc------c-CCeecHHHHHHcCcccc----CCCceEEeeCC--cccccEEEE
Confidence            379999999  667899999999999965      2 26899999999999986    34589999999  999999999


Q ss_pred             EeecCHHHHHHHHHcCCCC
Q psy6392          84 VQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        84 v~~aS~sAieaIE~aG~pi  102 (198)
                      |++||++|++|||+||+.+
T Consensus       123 a~~~SksA~ekIEaAGG~v  141 (143)
T 3r8s_L          123 GLRVTKGARAAIEAAGGKI  141 (143)
T ss_dssp             SSCCCHHHHHHHHTTTCEE
T ss_pred             EEecCHHHHHHHHHcCCEE
Confidence            9999999999999999654

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...

Probab=99.84  E-value=2e-21  Score=157.23  Aligned_cols=83  Identities=17%  Similarity=0.296  Sum_probs=74.6

Q ss_pred             cccCCCCCCC---CCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeE
Q psy6392           4 FLYLSQPLFT---GADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKI   80 (198)
Q Consensus         4 ~RlPKrGF~~---~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI   80 (198)
                      .||||+||++   +++++++|.+|||++||. ++ |      +||+++|+++|+|+.     .++|||||+|  +++ +|
T Consensus        60 rRlPK~GF~~~~~~~~~~~~y~~VNL~~L~~-~~-G------~I~~~~L~~~glv~~-----~~~VKvLg~G--~l~-~v  123 (150)
T 3v2d_P           60 MRLPKRGMQGQVPGEIKRPRYQGVNLKDLAR-FE-G------EVTPELLVRAGLLKK-----GYRLKILGEG--EAK-PL  123 (150)
T ss_dssp             TTSCCCSCCCCTTCCCCCCCEEEEEHHHHTT-CC-S------EECHHHHHTTTSSCT-----TCEEEEECSS--CCC-SC
T ss_pred             EEcCccCccCccccccccceEEEEEHHHHhh-cC-C------cccHHHHHHCCCccc-----ccceEEEecC--Ccc-cE
Confidence            4899999995   337899999999999997 65 5      899999999999975     3599999999  999 99


Q ss_pred             EEEEeecCHHHHHHHHHcCCCC
Q psy6392          81 NIEVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        81 ~Iev~~aS~sAieaIE~aG~pi  102 (198)
                      +|+|++||++|+++||+||+.+
T Consensus       124 ~V~a~~~S~~A~~kIe~aGG~v  145 (150)
T 3v2d_P          124 KVVAHAFSKSALEKLKAAGGEP  145 (150)
T ss_dssp             EECBSCBCHHHHHHHHHTTCBC
T ss_pred             EEEEEEcCHHHHHHHHHcCCEE
Confidence            9999999999999999999654

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M

Probab=99.79  E-value=1.2e-20  Score=153.45  Aligned_cols=82  Identities=23%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEE
Q psy6392           5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEV   84 (198)
Q Consensus         5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev   84 (198)
                      ||||+||+  | ++++|.+|||++|+.|++.      . ||+++|+++|+|+.    ..++|||||+|  +|+.||+|+|
T Consensus        59 rlPK~GF~--n-~~~~~~~VNL~~L~~l~~~------~-i~~~~L~~~gli~~----~~~~vKVLG~G--~l~~~l~Vka  122 (156)
T 2zjr_I           59 RLPKRGFN--N-VGTTYEVVKLSQLQDLEDT------T-FDRDTLEAYRLVRR----KNRPVKLLASG--EISRAVTVHV  122 (156)
T ss_dssp             TSCCCCCC--C-CCCCCCEECHHHHTTSCCC------C-CCTTTTHHHHHCCC----CSSCCEECCCC--CCCCCCCCCC
T ss_pred             ecCCCCCc--C-CceEEEeechhHHHhhhcC------C-cCHHHHHhCCcEec----cccceEEeeCC--ccCcCeEEEE
Confidence            79999999  5 7889999999999976543      3 88999999999986    35689999999  9999999999


Q ss_pred             eecCHHHHHHHHHcCCCC
Q psy6392          85 QWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        85 ~~aS~sAieaIE~aG~pi  102 (198)
                      ++||++|+++||+||+.+
T Consensus       123 ~~fSk~A~ekIEaAGG~v  140 (156)
T 2zjr_I          123 DAASAAAIKAVEAAGGRV  140 (156)
T ss_dssp             SEECHHHHHHHGGGSCCC
T ss_pred             EecCHHHHHHHHHcCCEE
Confidence            999999999999999665

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...

Probab=99.79  E-value=5.4e-20  Score=150.68  Aligned_cols=88  Identities=8%  Similarity=0.104  Sum_probs=75.4

Q ss_pred             cCCCCCCCCCCCCcccceeehhhHHhHHh----hCCCC--CC-CccCHHHHHHCCCCcCCCCCCCcceEEecccccccce
Q psy6392           6 YLSQPLFTGADQRRQYPPLSLLQLQKFID----TNRID--PS-KPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKA   78 (198)
Q Consensus         6 lPKrGF~~~~~~r~~y~~INL~~Lq~~id----~Grid--~~-~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~   78 (198)
                      |||+||++.+.++.+|.+|||++|+.|++    .|+++  .+ .+||+++|+++|+|.       .+|||||+|  +|++
T Consensus        47 lPK~GF~~~~~~r~~~~~VNL~~L~~l~~~~~~~g~~~~~~~~~vId~~~L~~~gli~-------~~vKVLG~G--~l~k  117 (165)
T 1vq8_L           47 LGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDA-------DYVKVLGAG--QVRH  117 (165)
T ss_dssp             SCCCCCCCCGGGCCCEEEEEHHHHHHTTGGGTTSCCCC-----CEEEGGGTCTTCTTS-------SEEEEECCS--CCCS
T ss_pred             CCCCCCccCCcccceeeeEEHHHHHHHHHHhhhccccccCCCCeEECHHHHHHCCccC-------CceEEecCC--ccCC
Confidence            99999996444458899999999999984    67773  34 379999999999983       479999999  9999


Q ss_pred             eEEEEEeecCHHHHHHHHHcCCCC
Q psy6392          79 KINIEVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        79 kI~Iev~~aS~sAieaIE~aG~pi  102 (198)
                      ||+|+|++||++|+++||+||+.+
T Consensus       118 ~l~Vka~~fSk~A~ekIeaAGG~v  141 (165)
T 1vq8_L          118 ELTLIADDFSEGAREKVEGAGGSV  141 (165)
T ss_dssp             CCEEEESEECHHHHHHHHHTTCEE
T ss_pred             CEEEEEEecCHHHHHHHHHcCCEE
Confidence            999999999999999999999543

>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.76  E-value=4.9e-19  Score=142.69  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=69.6

Q ss_pred             cccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCC-----CCCCCcceEEecccccccce
Q psy6392           4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFE-----PFHNHYGVNLTDEGADNFKA   78 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~-----~~~~k~gVKLLg~G~~~l~~   78 (198)
                      .+|||+||++.++++++|.+|||++||.+++             +|+++|+++..     ++..++||||||+|  +|++
T Consensus        56 ~~~pK~GF~n~~~~~~~~~~VNL~~L~~l~~-------------~L~~~gli~~~~~~~vid~~~~GvKVLG~G--~l~~  120 (147)
T 3j21_L           56 DHLGKRGFSRPPEVQREVRVVNLKFIDEHLD-------------ELMQMGIAYEEGGKIIVDVTQFADKVLGTG--KLTR  120 (147)
T ss_dssp             CCSCCCSCCCCTTTCCCCCEEEHHHHHHTTT-------------TTTTSCCCSSSSBSEEEEGGGGCCEEECCS--CCSS
T ss_pred             CcCCcCCCCccccccceeEEEEHHHHHHHHH-------------HHHHcCcccccCCcceecccccCcEEecCC--ccCc
Confidence            4899999996555688999999999999875             27888888652     11134469999999  9999


Q ss_pred             eEEEEEeecCHHHHHHHHHcCCC
Q psy6392          79 KINIEVQWTSEPVIAAIERNGEA  101 (198)
Q Consensus        79 kI~Iev~~aS~sAieaIE~aG~p  101 (198)
                      ||+|+|+.||++|+++||+||+.
T Consensus       121 ~v~Vka~~fS~~A~ekIeaaGG~  143 (147)
T 3j21_L          121 PLVIKARAFSPKAEEKIKAAGGE  143 (147)
T ss_dssp             CEEEEESEECHHHHHHHHHTTCE
T ss_pred             CEEEEEEecCHHHHHHHHHcCCE
Confidence            99999999999999999999964

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.69  E-value=3e-19  Score=155.18  Aligned_cols=92  Identities=12%  Similarity=0.176  Sum_probs=76.9

Q ss_pred             ccCC-CCCCCCCC-CCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEE
Q psy6392           5 LYLS-QPLFTGAD-QRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINI   82 (198)
Q Consensus         5 RlPK-rGF~~~~~-~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~I   82 (198)
                      |||| +||+++++ ++++|.+|||++|+.+    +++++++||+++|+++|+|+.......++|||||+|  +|+.+|+|
T Consensus       124 RlPK~rGF~n~~~~~r~~y~~VNL~kL~~l----r~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~G--eLtkkLtV  197 (257)
T 3bbo_N          124 RLPKLRGIAGGMHAGLPKYVNVNLTDIENA----GFQDGEEVSLETLKAKRVINPSGRERKLPLKILADG--ELSKKLTI  197 (257)
T ss_dssp             CCCCCSSCCCCCSSCCSSSSCSCSSCCSCS----STTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSS--CCCSSCCC
T ss_pred             hcccccccCCccccCcceeeeEeHHHHhhc----ccCCCCEeCHHHHHhCCcccccccccCccEEEEeCC--ccCCCeEE
Confidence            7999 89996543 5779999999999865    355667899999999999975100124589999999  99999999


Q ss_pred             EEeecCHHHHHHHHHcCCCC
Q psy6392          83 EVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        83 ev~~aS~sAieaIE~aG~pi  102 (198)
                      +|++||++|+++||+||+.+
T Consensus       198 kA~~fSksA~eKIEaAGG~v  217 (257)
T 3bbo_N          198 KAGAFSTSAKEKLEYAGCSL  217 (257)
T ss_dssp             CSSCCTGGGTTSSTTTTCCE
T ss_pred             EEEecCHHHHHHHHHcCCEE
Confidence            99999999999999999554

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.64  E-value=3.4e-17  Score=131.64  Aligned_cols=88  Identities=10%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             ccCCCCCCCCCCCCc-cc-ceeehhhHHhHHhhCCCCCCCccCHHH-H-HHCCCCcCCCCCCCcceEEecccccccce-e
Q psy6392           5 LYLSQPLFTGADQRR-QY-PPLSLLQLQKFIDTNRIDPSKPIDLAA-L-CNTGLYTFEPFHNHYGVNLTDEGADNFKA-K   79 (198)
Q Consensus         5 RlPKrGF~~~~~~r~-~y-~~INL~~Lq~~id~Grid~~~~Idl~~-L-~~~Gli~~~~~~~k~gVKLLg~G~~~l~~-k   79 (198)
                      .|||+||++.+..+. .| .+|||++|+.|++.+.     .+|+.. | .++++|...   ...+|||||+|  ++++ |
T Consensus        52 ~lpK~GF~~~~~~~~~~~~~~VNl~~L~~l~~~~~-----~~~~~~~l~~~~~vI~~~---~~~~vKVLG~G--el~k~~  121 (148)
T 2zkr_l           52 YFGKVGMKHYHLKRNQSFCPTVNLDKPWTLVSEQT-----RVNAAKNKTGVAPIIDVV---RSGYYKVLGKG--KLPKQP  121 (148)
T ss_dssp             ----------------CCCCEEETHHHHHHTTTTT-----SSCTTTTEEEHHHHSTTC---SSSCCEEECCS--CCCSSC
T ss_pred             cCCCCCcCCCCccccceecceEEHHHHHhhhhcCc-----EEehhhhccccCCeEecc---ccCceEEecCC--ccccCC
Confidence            499999994332223 45 8999999999887652     344432 2 466777641   23359999999  9998 9


Q ss_pred             EEEEEeecCHHHHHHHHHcCCCC
Q psy6392          80 INIEVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        80 I~Iev~~aS~sAieaIE~aG~pi  102 (198)
                      |+|+|+.||++|+++||+||+.+
T Consensus       122 l~Vka~~fSk~A~ekIeaAGG~v  144 (148)
T 2zkr_l          122 VIVKAKFFSRRAEEKIKSVGGAC  144 (148)
T ss_dssp             CEEEESEECHHHHHHHHHTTCEE
T ss_pred             EEEEEEecCHHHHHHHHHcCCEE
Confidence            99999999999999999999643

>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.59  E-value=8.7e-17  Score=125.64  Aligned_cols=69  Identities=14%  Similarity=0.118  Sum_probs=59.9

Q ss_pred             ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEE
Q psy6392           5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEV   84 (198)
Q Consensus         5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev   84 (198)
                      |+|||||+  +  +++|.+|||++||++++.|     ++||                  .++||||+|  +++.+++|+|
T Consensus        32 rlpKrgF~--~--r~~~~~VnL~~L~~~~~~g-----~~i~------------------~~vKVLg~G--~l~~kl~V~a   82 (120)
T 3j21_P           32 DVAWRLER--P--RRQRAEVNVSKINRYANDG-----EMIV------------------VPGSVLGAG--KLEKKVIVAA   82 (120)
T ss_dssp             HHHHHHHS--C--TTSSEEEEHHHHTTSSCTT-----CEEE------------------EEEEEECSS--CCCSCCEEEE
T ss_pred             HHHhhcCC--C--CCcceeEEHHHHHHHHhcC-----CEEE------------------EEEEEcCCC--eecCCEEEEE
Confidence            79999999  4  7889999999999887654     2333                  268999999  9999999999


Q ss_pred             eecCHHHHHHHHHcCCCC
Q psy6392          85 QWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        85 ~~aS~sAieaIE~aG~pi  102 (198)
                      ++||++|+++||+||+.+
T Consensus        83 ~~fS~~A~ekIe~AGG~v  100 (120)
T 3j21_P           83 WKFSETARRKIIEAGGEA  100 (120)
T ss_dssp             EEECHHHHHHHTTTSSCE
T ss_pred             eccCHHHHHHHHHcCCEE
Confidence            999999999999999654

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K

Probab=99.43  E-value=5.5e-14  Score=113.43  Aligned_cols=85  Identities=12%  Similarity=0.101  Sum_probs=62.2

Q ss_pred             cccCCCCCCCCCCC--CcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCC---CCcCCCCCCCc-ceEEeccccccc-
Q psy6392           4 FLYLSQPLFTGADQ--RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTG---LYTFEPFHNHY-GVNLTDEGADNF-   76 (198)
Q Consensus         4 ~RlPKrGF~~~~~~--r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~G---li~~~~~~~k~-gVKLLg~G~~~l-   76 (198)
                      .+|||+||++++..  +..+++|||++|+.+++.+.     .++...  +.+   +|..    .+. .|||||+|  +| 
T Consensus        53 ~~fGK~Gfr~~h~~~n~~~~~~VNLdkL~~l~~~~~-----~~~~~~--~~~~~~vId~----~~~g~~KvLG~G--~l~  119 (149)
T 4a17_K           53 GYYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDAT-----RQKYAE--DKKKVPVIDV----TKAGFFKVLGKG--RLP  119 (149)
T ss_dssp             TCSSCCSCCCSSCCCGGGCCCEEEGGGHHHHSCHHH-----HHHHHH--CCSSCCEEEH----HHHTCCEEECCS--CCC
T ss_pred             CcCCCCCccCCCccCCcceeeEEEHHHHHHHhhhhc-----chhhhh--hcCCceEEEe----ccCCeEEEecCC--ccC
Confidence            47999999964433  45678999999999875531     122222  222   3321    112 49999999  99 


Q ss_pred             ceeEEEEEeecCHHHHHHHHHcCCC
Q psy6392          77 KAKINIEVQWTSEPVIAAIERNGEA  101 (198)
Q Consensus        77 ~~kI~Iev~~aS~sAieaIE~aG~p  101 (198)
                      +.||+|+|..||++|+++||+||+.
T Consensus       120 ~~~v~v~a~~fS~~A~~kIe~aGG~  144 (149)
T 4a17_K          120 NQPVVVKAKYFSKTAERRIVAVGGA  144 (149)
T ss_dssp             SSCCEEEESEECHHHHHHHHHTTCE
T ss_pred             CCCEEEEEeecCHHHHHHHHHcCCE
Confidence            8999999999999999999999954

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...

Probab=99.38  E-value=9.3e-14  Score=107.84  Aligned_cols=66  Identities=11%  Similarity=0.169  Sum_probs=56.5

Q ss_pred             ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEE
Q psy6392           5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEV   84 (198)
Q Consensus         5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev   84 (198)
                      |+|||| +   .++++|.+|||++|+.+++.|     ++|         +       +  ++||||+|  +++.+++|+|
T Consensus        29 RlPKrG-~---~~~~~~~~VnL~~L~~~~~~g-----~~i---------l-------v--~vKVLg~G--~l~k~l~V~a   79 (116)
T 1vq8_O           29 DVAERL-E---KPRRTHAEVNLGRIERYAQED-----ETV---------V-------V--PGKVLGSG--VLQKDVTVAA   79 (116)
T ss_dssp             HHHHHH-T---SCTTTSEEEEHHHHHHHCCTT-----SEE---------E-------E--EEEEECCS--CCCSCCEEEE
T ss_pred             hcccCC-C---CCCceeeeEeHHHHHHHccCC-----CEE---------E-------E--EEEEeeCC--eecCCEEEEE
Confidence            799999 3   357899999999999887655     233         1       1  68999999  9999999999


Q ss_pred             eecCHHHHHHHHHcC
Q psy6392          85 QWTSEPVIAAIERNG   99 (198)
Q Consensus        85 ~~aS~sAieaIE~aG   99 (198)
                      ++||++|+++||+||
T Consensus        80 ~~fSk~A~ekIeaAG   94 (116)
T 1vq8_O           80 VDFSGTAETKIDQVG   94 (116)
T ss_dssp             EEECHHHHHHHHHHS
T ss_pred             EecCHHHHHHHHHcC
Confidence            999999999999995

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.26  E-value=5e-13  Score=111.51  Aligned_cols=73  Identities=21%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccce--eEEE
Q psy6392           5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKA--KINI   82 (198)
Q Consensus         5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~--kI~I   82 (198)
                      |+|||||+  +  +++|.+|||++|+.+...    +++..        +++       ...+||||+|  +++.  +++|
T Consensus        46 rlpKRgF~--s--r~~y~~VNLs~L~~~~~~----~g~~~--------~ii-------v~~~KVLg~G--eL~kvpkLtV  100 (188)
T 2zkr_o           46 VVLKRLFM--S--RTNRPPLSLSRMIRKMKL----PGREN--------KTA-------VVVGTVTDDV--RILEVPKLKV  100 (188)
T ss_dssp             HHHHHHHS--C--TTTSCEEEHHHHHSCSSS----CCSTT--------SEE-------EEEEEEECSS--CCCCCSSCCE
T ss_pred             HHHHhhCC--C--ccceeeeeHHHHHHHhhh----cCCCC--------cEE-------EeecEEECCc--eecccCCeEE
Confidence            79999999  5  689999999999975410    01111        111       1357999999  9999  9999


Q ss_pred             EEeecCHHHHHHHHHcCCCC
Q psy6392          83 EVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        83 ev~~aS~sAieaIE~aG~pi  102 (198)
                      .|.+||++|+++||+||+.+
T Consensus       101 ~A~~fSksArekIEaAGG~v  120 (188)
T 2zkr_o          101 CALRVSSRARSRILKAGGKI  120 (188)
T ss_dssp             EEEEECHHHHHHHHHHSSCE
T ss_pred             EEeecCHHHHHHHHHcCCEE
Confidence            99999999999999999543

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O

Probab=99.21  E-value=8.6e-13  Score=103.28  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=58.5

Q ss_pred             cccCCCCCCCCCCCCcccceeehhhHHhHHh-hCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccc--eeE
Q psy6392           4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFID-TNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK--AKI   80 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id-~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~--~kI   80 (198)
                      .|+|||||+  +  +.+|.+|||++|+.+.+ .|+  +++++                  ...+||||+|  +++  .++
T Consensus        26 rrvpKRgF~--s--r~~~~~VnLs~L~~~~~~~g~--~g~~v------------------vv~~KVlg~G--~l~~~~kl   79 (121)
T 3jyw_O           26 KVVLKALFL--S--KINRPPVSVSRIARALKQEGA--ANKTV------------------VVVGTVTDDA--RIFEFPKT   79 (121)
T ss_dssp             HHHHHTTTS--C--STTSCCBCHHHHHHHTTTTSC--SSSEE------------------EESSCBCCCS--CCCSSSCC
T ss_pred             HHHHHHHCC--C--CCccceEEHHHHHHHhhccCC--CCCEE------------------EEEEEEcCCc--eEcccCCE
Confidence            378999999  4  57999999999998765 221  11222                  1256899999  998  799


Q ss_pred             EEEEeecCHHHHHHHHHcCCCC
Q psy6392          81 NIEVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        81 ~Iev~~aS~sAieaIE~aG~pi  102 (198)
                      +|.+.+||++|+++||+||+.+
T Consensus        80 ~V~a~~fS~~A~~kIe~AGG~~  101 (121)
T 3jyw_O           80 TVAALRFTAGARAKIVKAGGEC  101 (121)
T ss_dssp             CEECSSBCTTTTTHHHHHTCCB
T ss_pred             EEEEEecCHHHHHHHHHcCCEE
Confidence            9999999999999999999654

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V

Probab=99.12  E-value=7.3e-12  Score=101.14  Aligned_cols=90  Identities=12%  Similarity=0.045  Sum_probs=60.3

Q ss_pred             cccCCCCCCCCCCCC--cccceeehhhHHhHHhhCCCCCCCccCHHHHH-HCCCCcCCCCCCCc-ceEEeccccccc-ce
Q psy6392           4 FLYLSQPLFTGADQR--RQYPPLSLLQLQKFIDTNRIDPSKPIDLAALC-NTGLYTFEPFHNHY-GVNLTDEGADNF-KA   78 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r--~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~-~~Gli~~~~~~~k~-gVKLLg~G~~~l-~~   78 (198)
                      ..++|+||++++..+  ...++|||++|..+++...-.     +..+.- +.+..-  ++..+. .|||||+|  +| +.
T Consensus        51 ~~fGK~G~r~~h~~~n~~~~~~INldkL~~lv~~~~~~-----~~a~~~~~~~~~v--ID~~~~g~vKVLG~G--~l~~~  121 (149)
T 3o58_Y           51 GYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRD-----QYLKSASKETAPV--IDTLAAGYGKILGKG--RIPNV  121 (149)
T ss_dssp             SSSSCCSCCCCCCCCCCCCCCSTTTTHHHHCSSCCSCS-----SCTTSSTTSSCCB--CCCSSSCSCCCCCCC--CCCSC
T ss_pred             CccCCCCcccCcccccccccceEEHHHHHHHhHHHHhh-----hhhhhccCCCCcE--EEEecccceEEEcCC--ccCCC
Confidence            358999999654433  224689999999988654211     000000 001100  112233 49999999  99 99


Q ss_pred             eEEEEEeecCHHHHHHHHHcCCCC
Q psy6392          79 KINIEVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        79 kI~Iev~~aS~sAieaIE~aG~pi  102 (198)
                      ||+|+|..||++|+++||+||+.+
T Consensus       122 ~v~Vka~~fS~~A~ekIe~aGG~~  145 (149)
T 3o58_Y          122 PVIVKARFVSKLAEEKIRAAGGVV  145 (149)
T ss_dssp             CEEECSSCCTTTTHHHHGGGSCEE
T ss_pred             CEEEEEeecCHHHHHHHHHcCCEE
Confidence            999999999999999999999643

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N

Probab=98.82  E-value=4e-10  Score=93.49  Aligned_cols=68  Identities=19%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             ccCCCCCCCCCCCCcccceeehhhHHhHHhh---CCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccc--ee
Q psy6392           5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDT---NRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK--AK   79 (198)
Q Consensus         5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~---Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~--~k   79 (198)
                      ++|||+|.  +  +.+|.+|||++|+.+++.   |.     +|                  -..+||||+|  +++  .+
T Consensus        48 ~V~KRLf~--s--r~nr~pVnLsrI~r~~~~~e~gk-----~v------------------Vv~gKVLg~G--~l~~v~k   98 (181)
T 4a17_N           48 NILKRLSS--S--RLNKFPLSLSRIVKNLNETNKEQ-----VI------------------VSTSTVTNDE--RLLTVPK   98 (181)
T ss_dssp             HHHHHHSC--C--GGGSCCEEHHHHHHSCCHHHHHS-----EE------------------EESSEEECCT--TCCSCCC
T ss_pred             HHHHHHcC--C--ccccCcccHHHHHHHhccccCCC-----EE------------------EEEEEEcCCc--eEcccCC
Confidence            57899999  4  679999999999987643   31     11                  1256999999  998  78


Q ss_pred             EEEEEeecCHHHHHHHHHcCCC
Q psy6392          80 INIEVQWTSEPVIAAIERNGEA  101 (198)
Q Consensus        80 I~Iev~~aS~sAieaIE~aG~p  101 (198)
                      ++|.+.+||++|+++||+||+.
T Consensus        99 l~V~A~~fS~sA~ekIe~AGG~  120 (181)
T 4a17_N           99 LTVCALKFTETARKRILAAGGK  120 (181)
T ss_dssp             CEEECSEECHHHHHHHHTTTCE
T ss_pred             EEEEEeecCHHHHHHHHHcCCE
Confidence            9999999999999999999943

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1vqol1	150	c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A	4e-06
d2gycj1	140	c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E	4e-04
d2zjri1	141	c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {D	0.001

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 8/86 (9%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 18  RRQYPPLSLLQLQKFIDT----NRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGA 73
           + +   + + ++ + +      +  +         + +            Y   L   GA
Sbjct: 58  QEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEE---ADDADYVKVL---GA 111

Query: 74  DNFKAKINIEVQWTSEPVIAAIERNG 99
              + ++ +     SE     +E  G
Sbjct: 112 GQVRHELTLIADDFSEGAREKVEGAG 137

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 14/96 (14%)

Query: 5   LYLSQPLFTGAD-QRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNH 63
           LY   P F     +      + L  L K            +DL  L    +         
Sbjct: 54  LYRRLPKFGFTSRKAAITAEIRLSDLAKVEG-------GVVDLNTLKAANIIG----IQI 102

Query: 64  YGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNG 99
               +    A      + +     ++   AAIE  G
Sbjct: 103 EFAKVI--LAGEVTTPVTVRGLRVTKGARAAIEAAG 136

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 11/78 (14%)

Query: 31  KFIDTNRIDPSKPIDLAALCNTGLYTFEPF---------HNHYGVNLTDEGADNFKAKIN 81
           K    N     + + L+ L +    TF+             +  V L   G       + 
Sbjct: 59  KRGFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASG--EISRAVT 116

Query: 82  IEVQWTSEPVIAAIERNG 99
           + V   S   I A+E  G
Sbjct: 117 VHVDAASAAAIKAVEAAG 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2zjri1	141	Ribosomal protein L15 (L15p) {Deinococcus radiodur	99.74
d1vqol1	150	Ribosomal protein L15 (L15p) {Archaeon Haloarcula	99.72
d2gycj1	140	Ribosomal protein L15 (L15p) {Escherichia coli [Ta	99.68
d2j01p1	146	Ribosomal protein L15 (L15p) {Thermus thermophilus	99.66
d1vqoo1	115	Ribosomal protein L18e {Archaeon Haloarcula marism	98.39

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.74  E-value=7.3e-20  Score=143.84  Aligned_cols=83  Identities=22%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             cccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEE
Q psy6392           4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIE   83 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Ie   83 (198)
                      .|+||+||+  + ++++|.+|||++|+.+++       .+||++.|.++++|..    ..++|||||+|  +|+.+|+|+
T Consensus        55 rrlPKrGf~--~-~~~~~~~inl~~l~~~~~-------~~i~~~~L~~~~li~~----~~~~VKiLg~G--el~~kl~I~  118 (141)
T d2zjri1          55 ARLPKRGFN--N-VGTTYEVVKLSQLQDLED-------TTFDRDTLEAYRLVRR----KNRPVKLLASG--EISRAVTVH  118 (141)
T ss_dssp             TTSCCCCCC--C-CCCCCCEECHHHHTTSCC-------CCCCTTTTHHHHHCCC----CSSCCEECCCC--CCCCCCCCC
T ss_pred             ecCCccCCC--c-ccceEEEEEhhhhhcccc-------cchhhhhhhhhceecc----CCCCeEEccCC--cccCCEEEE
Confidence            389999999  4 357999999999997743       4689999999999986    46799999999  999999999


Q ss_pred             EeecCHHHHHHHHHcCCCC
Q psy6392          84 VQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        84 v~~aS~sAieaIE~aG~pi  102 (198)
                      |++||++|+++||+||+.|
T Consensus       119 v~~~S~sA~~~IE~aGG~V  137 (141)
T d2zjri1         119 VDAASAAAIKAVEAAGGRV  137 (141)
T ss_dssp             CSEECHHHHHHHGGGSCCC
T ss_pred             EEEeCHHHHHHHHHCCCEE
Confidence            9999999999999999654

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.72  E-value=1.4e-18  Score=136.43  Aligned_cols=93  Identities=8%  Similarity=-0.035  Sum_probs=76.8

Q ss_pred             CcccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCC----CCccCHHHHHHCCCCcCCCCCCCcceEEecccccccce
Q psy6392           3 GFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDP----SKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKA   78 (198)
Q Consensus         3 ~~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~----~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~   78 (198)
                      +.+|||+||+++++++.+|.++||.+|+.+++.+..+.    ...++..+|.+.+++..    ...+|||||+|  +|+.
T Consensus        43 ~~~lpK~g~~~~~~~~~~~~~inl~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~vKlLG~G--~l~~  116 (150)
T d1vqol1          43 HEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEAD----DADYVKVLGAG--QVRH  116 (150)
T ss_dssp             SCCSSCCCCCCCGGGCCCEEEEEHHHHHHTTTTCTTSCCCC-----CEEEGGGTCTTCS----SSSEEEEECCS--CCCS
T ss_pred             CccCCccCccccccccceeeeccHHHHHHHHhhhccccccccccchhhHHHHhhccccc----cccceEEecCC--ccCc
Confidence            46899999997777889999999999999998765543    34455566778888765    35689999999  9999


Q ss_pred             eEEEEEeecCHHHHHHHHHcCCC
Q psy6392          79 KINIEVQWTSEPVIAAIERNGEA  101 (198)
Q Consensus        79 kI~Iev~~aS~sAieaIE~aG~p  101 (198)
                      ||+|+|++||++|+++||+||+.
T Consensus       117 ~l~Ika~~~S~sA~ekIe~aGG~  139 (150)
T d1vqol1         117 ELTLIADDFSEGAREKVEGAGGS  139 (150)
T ss_dssp             CCEEEESEECHHHHHHHHHTTCE
T ss_pred             CEEEEEEEcCHHHHHHHHHcCCE
Confidence            99999999999999999999954

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.4e-19  Score=140.16  Aligned_cols=84  Identities=15%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             cccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEE
Q psy6392           4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIE   83 (198)
Q Consensus         4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Ie   83 (198)
                      .|+||+||+  +.++..|.+|||.+|+.+      + +.+||+++|+++|++..    ...+||||+.|  +|+.||+|+
T Consensus        56 rr~PK~Gf~--~~~~~~~~~i~l~~l~~~------~-~~~i~~~~L~~~gli~~----~~~~vKiLg~G--el~~ki~i~  120 (140)
T d2gycj1          56 RRLPKFGFT--SRKAAITAEIRLSDLAKV------E-GGVVDLNTLKAANIIGI----QIEFAKVILAG--EVTTPVTVR  120 (140)
T ss_dssp             SSSSSCCCC--CCCCCCCCCBCCSSSSSS------S-SCSCCSTTSCTTTTCCC----SSCCCBCCCSC--CCCCCCCCC
T ss_pred             eeCceeecc--ccccceeeeEEeeeehhc------c-cccccHHHHhhcCeeec----cceeeEEeccC--cccCCEEEE
Confidence            489999999  677889999999999853      2 35799999999999986    35689999999  999999999


Q ss_pred             EeecCHHHHHHHHHcCCCC
Q psy6392          84 VQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        84 v~~aS~sAieaIE~aG~pi  102 (198)
                      |++||++|+++||+||+.|
T Consensus       121 ~~~~S~sA~~~IE~aGG~V  139 (140)
T d2gycj1         121 GLRVTKGARAAIEAAGGKI  139 (140)
T ss_dssp             CSCCCTTTSSSSSSSCCCC
T ss_pred             EEEeCHHHHHHHHHcCCcc
Confidence            9999999999999999765

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=8.1e-18  Score=132.45  Aligned_cols=83  Identities=17%  Similarity=0.296  Sum_probs=68.7

Q ss_pred             cccCCCCCCCCCC---CCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeE
Q psy6392           4 FLYLSQPLFTGAD---QRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKI   80 (198)
Q Consensus         4 ~RlPKrGF~~~~~---~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI   80 (198)
                      -|+||+||++.+.   .+..|.+|||.+|+.+      +  ..+|+++|+++|||+.     .+.|||||+|  +++ +|
T Consensus        56 rrlPK~Gf~~~~~~~~~~~~~~~inl~~l~~~------~--~~~~~~~l~~~glik~-----~~~vKvLg~G--e~k-~i  119 (146)
T d2j01p1          56 MRLPKRGMQGQVPGEIKRPRYQGVNLKDLARF------E--GEVTPELLVRAGLLKK-----GYRLKILGEG--EAK-PL  119 (146)
T ss_dssp             CSCCCCCSCCCSSCSCCCCCEEEEETTTTTTS------C--SCCCTTTTTTSSSCSS-----CCEEEEECSS--CCC-SS
T ss_pred             eccchhhhhcccccceeeEEeehhhhhhhhhc------c--cchhhHHHHHhCcccc-----CceEEEecCC--ceE-eE
Confidence            3799999995332   3677889999999743      3  3588889999999975     4579999999  775 99


Q ss_pred             EEEEeecCHHHHHHHHHcCCCC
Q psy6392          81 NIEVQWTSEPVIAAIERNGEAI  102 (198)
Q Consensus        81 ~Iev~~aS~sAieaIE~aG~pi  102 (198)
                      +|+|++||++|+++||+||+.|
T Consensus       120 ~I~v~~~SksA~ekIEkaGG~v  141 (146)
T d2j01p1         120 KVVAHAFSKSALEKLKAAGGEP  141 (146)
T ss_dssp             CCCCSBCCHHHHHHHHTSCCCC
T ss_pred             EEEEEEeCHHHHHHHHHcCCEE
Confidence            9999999999999999999654

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.39  E-value=9.6e-08  Score=72.21  Aligned_cols=60  Identities=15%  Similarity=0.261  Sum_probs=47.8

Q ss_pred             CCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEEeecCHHHHHHHH
Q psy6392          17 QRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIE   96 (198)
Q Consensus        17 ~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev~~aS~sAieaIE   96 (198)
                      .++.+.+|||++|+.+...|     ++|                  --..||||+|  +++.+++|.|.+||++|+++||
T Consensus        36 ~rr~r~~VnLski~~~~k~~-----~~v------------------vvpgKVLg~G--~l~~k~~V~A~~fS~sA~~kI~   90 (115)
T d1vqoo1          36 PRRTHAEVNLGRIERYAQED-----ETV------------------VVPGKVLGSG--VLQKDVTVAAVDFSGTAETKID   90 (115)
T ss_dssp             CGGGSEEEEHHHHHHHCCTT-----SEE------------------EEEEEEECCS--CCCSCCEEEEEEECHHHHHHHH
T ss_pred             ccccCCCccHHHHHHhccCC-----CEE------------------EEeeEEeccc--EEcCCEEEEEeecCHHHHHHHH
Confidence            35678899999998764332     111                  1135999999  9999999999999999999999


Q ss_pred             HcCCC
Q psy6392          97 RNGEA  101 (198)
Q Consensus        97 ~aG~p  101 (198)
                      ++|+.
T Consensus        91 ~aGg~   95 (115)
T d1vqoo1          91 QVGEA   95 (115)
T ss_dssp             HHSEE
T ss_pred             HcCCE
Confidence            99943