Psyllid ID: psy6439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccccHHHHHHcccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHccccEEEEEEccccEEEEEEcccccccccccccEEEEcccccHHHHHHHHHHHHccccHEEEEEcHHHHHHHHHHHHHHcccccEEEEEccccccccccHcHHHHHcc
Coil and Loop (DISEMBL)
MALHSAVKGKLLAVIGDEDTCVGFLLggigeinkhrqpnflvvdkntsvsDIEEAFRKFIKRDDVDIILINQNVAELIRHCiddhtqpipavleipskdhpydaskDSILRRAK
Flexible Loop (DISEMBL)
MALHSAVKGKLLAVIGDEDTCVGFLLGGIGeinkhrqpnflvvdkntsVSDIEEAFrkfikrddvdiILINQNVAELIRHCIDDHTQPIpavleipskdhpydaskdsilrrak
Low Complexity Region (SEG)
MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK
Disordered region (IsUnstruct)
******VKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLE********************
Disordered Region (DISOPRED)
************AVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSK****DASKDSILRRA*
Disordered Region (DISEMBL)
MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK
Disordered Region (DISPRO)
*******KGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSI****K
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
P31478	124	V-type proton ATPase subu	N/A	N/A	1.0	0.919	0.833	3e-52
Q24583	124	V-type proton ATPase subu	yes	N/A	1.0	0.919	0.807	2e-51
Q1HQK8	127	V-type proton ATPase subu	N/A	N/A	1.0	0.897	0.833	5e-51
O44091	124	V-type proton ATPase subu	yes	N/A	1.0	0.919	0.807	5e-51
Q17029	127	V-type proton ATPase subu	yes	N/A	1.0	0.897	0.824	7e-51
Q16864	119	V-type proton ATPase subu	yes	N/A	0.956	0.915	0.697	2e-42
P50408	119	V-type proton ATPase subu	yes	N/A	0.956	0.915	0.697	5e-42
Q9D1K2	119	V-type proton ATPase subu	yes	N/A	0.956	0.915	0.697	5e-42
Q23680	121	Probable V-type proton AT	yes	N/A	0.982	0.925	0.696	6e-42
Q28029	119	V-type proton ATPase subu	yes	N/A	0.956	0.915	0.688	1e-41

>sp|P31478|VATF_MANSE V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 108/114 (94%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MALH+AVKGKL++VIGDEDTCVGFLLGGIGEINK+R PNF+VVDKNT VS+IEE F++F+
Sbjct: 1   MALHAAVKGKLISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFV 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQNVAEL+RH ID HT P+P+VLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAK 114

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. V-ATPase is responsible for energizing electrophoretic potassium/proton antiport (1 potassium ion is exchanged for 2 protons) by generating a transmembrane voltage of more than 200mV.
Manduca sexta (taxid: 7130)

>sp|Q24583|VATF1_DROME V-type proton ATPase subunit F 1 OS=Drosophila melanogaster GN=Vha14-1 PE=1 SV=1

 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 108/114 (94%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MALHSA+KGKL++VIGDEDTCVGFLLGG+GEINK+R PNF+VVDKNT+VS++E+ F++F+
Sbjct: 1   MALHSAIKGKLISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFL 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQN AELIRH ID HT P+PAVLEIPSKDHPYDASKDSILRRA+
Sbjct: 61  KRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRAR 114

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila melanogaster (taxid: 7227)

>sp|Q1HQK8|VATF_AEDAE V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2 SV=1

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 106/114 (92%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MAL SAVKGKL++VIGDEDTCVGFLLGGIGEINK+R PNF+VVDKNT+VS+IE+ F++FI
Sbjct: 1   MALLSAVKGKLISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTAVSEIEDCFKRFI 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQN AE+IRH ID HT P PAVLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNYAEMIRHVIDAHTSPTPAVLEIPSKDHPYDASKDSILRRAK 114

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Aedes aegypti (taxid: 7159)

>sp|O44091|VATF1_DROPS V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 107/114 (93%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MALHSA+KGKL++VIGDEDTCVGFLLGG+GEINK+R PNF+VVDKNT VS++E+ F++F+
Sbjct: 1   MALHSAIKGKLISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTPVSELEDCFKRFL 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQN AELIRH ID HT P+PAVLEIPSKDHPYDASKDSILRRA+
Sbjct: 61  KRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRAR 114

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q17029|VATF_ANOGA V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 106/114 (92%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MAL SA+KGKL++VIGDEDTCVGFLLGG+GEINK+R PNF+VVDKNT+VS+IE+ F++FI
Sbjct: 1   MALLSAMKGKLISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFI 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQN AELIRH ID HT P PAVLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAK 114

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Anopheles gambiae (taxid: 7165)

>sp|Q16864|VATF_HUMAN V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2

 Score =  170 bits (430), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 97/109 (88%)

Query: 6   AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
           A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct: 2   AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query: 66  DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
            IILINQ +AE++RH +D H Q IPAVLEIPSK+HPYDA+KDSILRRA+
Sbjct: 62  GIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRAR 110

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|P50408|VATF_RAT V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 97/109 (88%)

Query: 6   AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
           A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct: 2   AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query: 66  DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
            IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRAK
Sbjct: 62  GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAK 110

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Rattus norvegicus (taxid: 10116)

>sp|Q9D1K2|VATF_MOUSE V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 97/109 (88%)

Query: 6   AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
           A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct: 2   AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query: 66  DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
            IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRAK
Sbjct: 62  GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAK 110

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|Q23680|VATF_CAEEL Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=3 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 96/112 (85%)

Query: 3   LHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR 62
           + SA KGK+LAVIGDEDT VGFLLGG+GE+NK R+PN+L+VDK T+V +IEEAF  F  R
Sbjct: 1   MASAAKGKILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCAR 60

Query: 63  DDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           DD+ IILINQ++AE+IR+ +D+HTQ IPAVLEIPSK+ PYD SKDSIL RA+
Sbjct: 61  DDIAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRAR 112

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|Q28029|VATF_BOVIN V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 97/109 (88%)

Query: 6   AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
           A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct: 2   AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query: 66  DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
            IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRA+
Sbjct: 62  GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAR 110

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
307210307	124	Vacuolar proton pump subunit F [Harpegna	1.0	0.919	0.885	6e-54
340718266	123	PREDICTED: v-type proton ATPase subunit	1.0	0.926	0.885	1e-53
66529931	123	PREDICTED: v-type proton ATPase subunit	1.0	0.926	0.877	2e-53
307191394	123	Vacuolar proton pump subunit F [Camponot	1.0	0.926	0.877	4e-53
383858746	123	PREDICTED: V-type proton ATPase subunit	1.0	0.926	0.877	5e-53
156550329	123	PREDICTED: V-type proton ATPase subunit	1.0	0.926	0.868	9e-53
322778698	119	hypothetical protein SINV_09212 [Solenop	1.0	0.957	0.855	3e-52
187119178	122	vacuolar H[+] ATPase 14kD subunit [Acyrt	1.0	0.934	0.850	2e-51
332024629	130	V-type proton ATPase subunit F 1 [Acromy	1.0	0.876	0.830	1e-50
357620864	132	V-type proton ATPase subunit F [Danaus p	1.0	0.863	0.833	1e-50

>gi|307210307|gb|EFN86937.1| Vacuolar proton pump subunit F [Harpegnathos saltator]

 Score =  214 bits (544), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 110/114 (96%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MALHSA KGKLLAVIGDEDTCVGFLLGG+GEINKHRQPNF+VVDKNT+VS+IE+ F++FI
Sbjct: 1   MALHSASKGKLLAVIGDEDTCVGFLLGGVGEINKHRQPNFMVVDKNTAVSEIEDTFKRFI 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQNVAE+IRH ID HTQPIPAVLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNVAEMIRHVIDSHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718266|ref|XP_003397592.1| PREDICTED: v-type proton ATPase subunit F 1-like [Bombus terrestris] gi|350401779|ref|XP_003486260.1| PREDICTED: V-type proton ATPase subunit F 1-like [Bombus impatiens]

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 110/114 (96%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MALHSA KGKLLAVIGDEDTCVGFLLGG+GEINKHRQPNF+VVDKNT+VSDIE+ F++FI
Sbjct: 1   MALHSAGKGKLLAVIGDEDTCVGFLLGGVGEINKHRQPNFMVVDKNTAVSDIEDTFKRFI 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQNVAE+IRH ID HTQPIP+VLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNVAEMIRHVIDSHTQPIPSVLEIPSKDHPYDASKDSILRRAK 114

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66529931|ref|XP_624852.1| PREDICTED: v-type proton ATPase subunit F 1-like [Apis mellifera] gi|380028107|ref|XP_003697752.1| PREDICTED: V-type proton ATPase subunit F 1-like [Apis florea]

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 110/114 (96%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MALHSA KGKLLAVIGDEDTCVGFLLGG+GEINKHRQPNF+VVDKNT+VSDIE+ F++FI
Sbjct: 1   MALHSAGKGKLLAVIGDEDTCVGFLLGGVGEINKHRQPNFMVVDKNTAVSDIEDTFKRFI 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQNVAE+IRH ID HTQPIP+VLEIPSKDHPYDA+KDSILRRAK
Sbjct: 61  KRDDIDIILINQNVAEMIRHVIDSHTQPIPSVLEIPSKDHPYDATKDSILRRAK 114

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191394|gb|EFN74968.1| Vacuolar proton pump subunit F [Camponotus floridanus]

 Score =  211 bits (537), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 110/114 (96%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MALHSA KGKLLAVIGDEDTCVGFLLGG+GEINKHRQPNFLVVDKNT++S+IE+ F++FI
Sbjct: 1   MALHSAGKGKLLAVIGDEDTCVGFLLGGVGEINKHRQPNFLVVDKNTAISEIEDMFKRFI 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQNVAE+IRH ID HTQPIP+VLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNVAEMIRHVIDSHTQPIPSVLEIPSKDHPYDASKDSILRRAK 114

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858746|ref|XP_003704860.1| PREDICTED: V-type proton ATPase subunit F 1-like [Megachile rotundata]

 Score =  211 bits (537), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 109/114 (95%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MALHSA KGKLLAVIGDEDTCVGFLLGG+GEINKHRQPNF+VVDKNT VSDIE+ F++FI
Sbjct: 1   MALHSAGKGKLLAVIGDEDTCVGFLLGGVGEINKHRQPNFMVVDKNTPVSDIEDTFKRFI 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQNVAE+IRH ID HTQPIP+VLEIPSKDHPYDASKDSILRRA+
Sbjct: 61  KRDDIDIILINQNVAEMIRHVIDSHTQPIPSVLEIPSKDHPYDASKDSILRRAR 114

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550329|ref|XP_001600999.1| PREDICTED: V-type proton ATPase subunit F-like [Nasonia vitripennis]

 Score =  210 bits (535), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 108/114 (94%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           M+LHSA KGKLLAVIGDEDTCVGFLLGG+GEINKHR PNF+VVDKNT+V DIEE F+KFI
Sbjct: 1   MSLHSAGKGKLLAVIGDEDTCVGFLLGGVGEINKHRHPNFMVVDKNTAVGDIEETFKKFI 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQN+AE+IRH ID HTQPIP+VLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNIAEMIRHVIDSHTQPIPSVLEIPSKDHPYDASKDSILRRAK 114

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778698|gb|EFZ09117.1| hypothetical protein SINV_09212 [Solenopsis invicta]

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 110/118 (93%), Gaps = 4/118 (3%)

Query: 1   MALHSAVKGKLLAVIGDE----DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAF 56
           MALHSA KGKLLAVIGDE    DTCVGFLLGG+GEINKHRQPNF+VVDKNT+VS+IE+ F
Sbjct: 1   MALHSAGKGKLLAVIGDEVSVNDTCVGFLLGGVGEINKHRQPNFMVVDKNTAVSEIEDTF 60

Query: 57  RKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           ++FIKRDD+DIILINQNVAE+IRH ID HTQPIPAVLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRFIKRDDIDIILINQNVAEMIRHVIDSHTQPIPAVLEIPSKDHPYDASKDSILRRAK 118

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187119178|ref|NP_001119690.1| vacuolar H[+] ATPase 14kD subunit [Acyrthosiphon pisum] gi|89473728|gb|ABD72676.1| putative vacuolar ATP synthase subunit F [Acyrthosiphon pisum] gi|239789617|dbj|BAH71421.1| ACYPI000082 [Acyrthosiphon pisum]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 107/114 (93%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MA+HSAVKGKLLAVIGDEDTCVGFLLGG+GEINKHR  NF+VVDKNT++ DIEE F+ F+
Sbjct: 1   MAMHSAVKGKLLAVIGDEDTCVGFLLGGVGEINKHRHSNFMVVDKNTAIIDIEECFKGFV 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQNVAE+IRH I+ HTQPIPAVLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNVAEMIRHVIEGHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|332024629|gb|EGI64826.1| V-type proton ATPase subunit F 1 [Acromyrmex echinatior]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/118 (83%), Positives = 108/118 (91%), Gaps = 4/118 (3%)

Query: 1   MALHSAVKGKLLAVIGDE----DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAF 56
           M LHSA KGKLLAVIGDE    DTCVGFLLGG+GEINKHRQ NF+VVDKNT+VS++E+ F
Sbjct: 1   MTLHSAGKGKLLAVIGDEVSVNDTCVGFLLGGVGEINKHRQANFMVVDKNTAVSEVEDTF 60

Query: 57  RKFIKRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           ++FIKRDD+DIILINQNVAE+IRH ID HTQPIPAVLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRFIKRDDIDIILINQNVAEMIRHVIDSHTQPIPAVLEIPSKDHPYDASKDSILRRAK 118

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620864|gb|EHJ72899.1| V-type proton ATPase subunit F [Danaus plexippus]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 107/114 (93%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           MAL +AVKGKL++VIGDEDTCVGFLLGGIGEINK+R PNF+VVDKNT VS++EE F++F+
Sbjct: 1   MALQAAVKGKLISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEVEECFKRFV 60

Query: 61  KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           KRDD+DIILINQNVAELIRH ID HT P+PAVLEIPSKDHPYDASKDSILRRAK
Sbjct: 61  KRDDIDIILINQNVAELIRHVIDSHTAPVPAVLEIPSKDHPYDASKDSILRRAK 114

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0262512	124	Vha14-1 "Vacuolar H[+] ATPase	1.0	0.919	0.807	1.1e-48
ZFIN|ZDB-GENE-040718-259	119	atp6v1f "ATPase, H+ transporti	0.938	0.899	0.757	7.5e-41
UNIPROTKB|Q16864	119	ATP6V1F "V-type proton ATPase	0.956	0.915	0.697	2.3e-39
MGI|MGI:1913394	119	Atp6v1f "ATPase, H+ transporti	0.956	0.915	0.697	2.9e-39
RGD|621552	119	Atp6v1f "ATPase, H transportin	0.956	0.915	0.697	2.9e-39
UNIPROTKB|Q28029	119	ATP6V1F "V-type proton ATPase	0.956	0.915	0.688	6.1e-39
UNIPROTKB|E2RN91	119	ATP6V1F "V-type proton ATPase	0.956	0.915	0.688	6.1e-39
UNIPROTKB|F1SMN6	119	ATP6V1F "V-type proton ATPase	0.956	0.915	0.688	7.8e-39
WB|WBGene00006918	121	vha-9 [Caenorhabditis elegans	0.964	0.909	0.709	7.8e-39
UNIPROTKB|G3MZB6	111	G3MZB6 "Uncharacterized protei	0.956	0.981	0.678	4.3e-38

FB|FBgn0262512 Vha14-1 "Vacuolar H[+] ATPase 14kD subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 92/114 (80%), Positives = 108/114 (94%)

Query:     1 MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
             MALHSA+KGKL++VIGDEDTCVGFLLGG+GEINK+R PNF+VVDKNT+VS++E+ F++F+
Sbjct:     1 MALHSAIKGKLISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFL 60

Query:    61 KRDDVDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
             KRDD+DIILINQN AELIRH ID HT P+PAVLEIPSKDHPYDASKDSILRRA+
Sbjct:    61 KRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRAR 114

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=NAS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-040718-259 atp6v1f "ATPase, H+ transporting, V1 subunit F" [Danio rerio (taxid:7955)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 81/107 (75%), Positives = 96/107 (89%)

Query:     8 KGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDI 67
             +GKL+AVIGDEDTC GFLLGGIGE+NK+R+PNFLVV+K TSV++IEE F+ F+ R+D+ I
Sbjct:     4 RGKLIAVIGDEDTCTGFLLGGIGELNKNRKPNFLVVEKETSVTEIEETFKSFLARNDIGI 63

Query:    68 ILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
             ILINQ +AE+IRH ID H Q IPAVLEIPSK+HPYDASKDSILRRAK
Sbjct:    64 ILINQFIAEMIRHAIDAHMQSIPAVLEIPSKEHPYDASKDSILRRAK 110

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0015992 "proton transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

UNIPROTKB|Q16864 ATP6V1F "V-type proton ATPase subunit F" [Homo sapiens (taxid:9606)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 76/109 (69%), Positives = 97/109 (88%)

Query:     6 AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
             A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct:     2 AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query:    66 DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
              IILINQ +AE++RH +D H Q IPAVLEIPSK+HPYDA+KDSILRRA+
Sbjct:    62 GIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRAR 110

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IDA

GO:0015992 "proton transport" evidence=NAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=NAS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=NAS

GO:0042624 "ATPase activity, uncoupled" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

MGI|MGI:1913394 Atp6v1f "ATPase, H+ transporting, lysosomal V1 subunit F" [Mus musculus (taxid:10090)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 76/109 (69%), Positives = 97/109 (88%)

Query:     6 AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
             A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct:     2 AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query:    66 DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
              IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRAK
Sbjct:    62 GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAK 110

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=ISO

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

RGD|621552 Atp6v1f "ATPase, H transporting, lysosomal V1 subunit F" [Rattus norvegicus (taxid:10116)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 76/109 (69%), Positives = 97/109 (88%)

Query:     6 AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
             A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct:     2 AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query:    66 DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
              IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRAK
Sbjct:    62 GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAK 110

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|Q28029 ATP6V1F "V-type proton ATPase subunit F" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 75/109 (68%), Positives = 97/109 (88%)

Query:     6 AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
             A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct:     2 AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query:    66 DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
              IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRA+
Sbjct:    62 GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAR 110

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|E2RN91 ATP6V1F "V-type proton ATPase subunit F" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 75/109 (68%), Positives = 97/109 (88%)

Query:     6 AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
             A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct:     2 AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query:    66 DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
              IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRA+
Sbjct:    62 GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDATKDSILRRAR 110

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|F1SMN6 ATP6V1F "V-type proton ATPase subunit F" [Sus scrofa (taxid:9823)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 75/109 (68%), Positives = 97/109 (88%)

Query:     6 AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
             A +GKL+AVIGDEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ R+D+
Sbjct:     2 AGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNREDI 61

Query:    66 DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
              IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRAK
Sbjct:    62 GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAK 110

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

WB|WBGene00006918 vha-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 78/110 (70%), Positives = 95/110 (86%)

Query:     5 SAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDD 64
             SA KGK+LAVIGDEDT VGFLLGG+GE+NK R+PN+L+VDK T+V +IEEAF  F  RDD
Sbjct:     3 SAAKGKILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDD 62

Query:    65 VDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
             + IILINQ++AE+IR+ +D+HTQ IPAVLEIPSK+ PYD SKDSIL RA+
Sbjct:    63 IAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRAR 112

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|G3MZB6 G3MZB6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 74/109 (67%), Positives = 96/109 (88%)

Query:     6 AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDV 65
             A +GKL+AVI DEDT  GFLLGGIGE+NK+R PNFLVV+K+T++++IE+ FR+F+ RDD+
Sbjct:     2 AGRGKLIAVIRDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDI 61

Query:    66 DIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
              IILINQ +AE++RH +D H + IPAVLEIPSK+HPYDA+KDSILRRA+
Sbjct:    62 GIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAR 110

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39111	VATF_YEAST	No assigned EC number	0.5089	0.9561	0.9237	yes	N/A
Q5JIR4	VATF_PYRKO	No assigned EC number	0.3173	0.7982	0.8921	yes	N/A
Q9I8H3	VATF_XENLA	No assigned EC number	0.7623	0.8859	0.9181	N/A	N/A
Q9Y756	VATF_NEUCR	No assigned EC number	0.5555	0.9210	0.8467	N/A	N/A
Q55AH5	VATF_DICDI	No assigned EC number	0.5350	1.0	0.95	yes	N/A
Q1HQK8	VATF_AEDAE	No assigned EC number	0.8333	1.0	0.8976	N/A	N/A
A7TMI5	VATF_VANPO	No assigned EC number	0.5044	0.9649	0.9243	N/A	N/A
A1DH48	VATF_NEOFI	No assigned EC number	0.5555	0.9210	0.8467	N/A	N/A
Q9D1K2	VATF_MOUSE	No assigned EC number	0.6972	0.9561	0.9159	yes	N/A
Q23680	VATF_CAEEL	No assigned EC number	0.6964	0.9824	0.9256	yes	N/A
Q28029	VATF_BOVIN	No assigned EC number	0.6880	0.9561	0.9159	yes	N/A
Q24583	VATF1_DROME	No assigned EC number	0.8070	1.0	0.9193	yes	N/A
A6RRW0	VATF_BOTFB	No assigned EC number	0.5648	0.9210	0.8467	N/A	N/A
Q9ZQX4	VATF_ARATH	No assigned EC number	0.5137	0.9561	0.8515	yes	N/A
O43046	VATF_SCHPO	No assigned EC number	0.4956	1.0	0.95	yes	N/A
C5A335	VATF_THEGJ	No assigned EC number	0.3084	0.7719	0.8627	yes	N/A
P31478	VATF_MANSE	No assigned EC number	0.8333	1.0	0.9193	N/A	N/A
Q16864	VATF_HUMAN	No assigned EC number	0.6972	0.9561	0.9159	yes	N/A
Q8U4A7	VATF_PYRFU	No assigned EC number	0.3333	0.6491	0.7184	yes	N/A
O44091	VATF1_DROPS	No assigned EC number	0.8070	1.0	0.9193	yes	N/A
Q17029	VATF_ANOGA	No assigned EC number	0.8245	1.0	0.8976	yes	N/A
O27037	VATF_METTH	No assigned EC number	0.31	0.7543	0.8113	yes	N/A
P50408	VATF_RAT	No assigned EC number	0.6972	0.9561	0.9159	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
TIGR01101	115	TIGR01101, V_ATP_synt_F, vacuolar ATP synthase F s	3e-68
pfam01990	92	pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) sub	5e-32
COG1436	104	COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase su	1e-14
PRK03957	100	PRK03957, PRK03957, V-type ATP synthase subunit F;	4e-09
PRK01395	104	PRK01395, PRK01395, V-type ATP synthase subunit F;	0.004

>gnl|CDD|130171 TIGR01101, V_ATP_synt_F, vacuolar ATP synthase F subunit

 Score =  200 bits (509), Expect = 3e-68
 Identities = 87/110 (79%), Positives = 101/110 (91%)

Query: 5   SAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDD 64
           SA KGKL+AVIGDEDT VGFLLGGIGEINK+R PNFLVVDKNT+VS+IE+ F +F+KRDD
Sbjct: 1   SAEKGKLIAVIGDEDTVVGFLLGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRFLKRDD 60

Query: 65  VDIILINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           + IILINQ++AE+IRH +D HT+ IPAVLEIPSKDHPYDASKDSILRRA+
Sbjct: 61  IAIILINQHIAEMIRHAVDAHTRSIPAVLEIPSKDHPYDASKDSILRRAR 110

This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit [Transport and binding proteins, Cations and iron carrying compounds]. Length = 115

>gnl|CDD|216832 pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) subunit

 Score =  107 bits (270), Expect = 5e-32
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 12/103 (11%)

Query: 12  LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
           +AVIGDEDT  GF L GIG +               S  + EEAF + ++R+D+ IILI 
Sbjct: 1   IAVIGDEDTVTGFRLAGIGVVYVV------------SPEEAEEAFEELLEREDIGIILIT 48

Query: 72  QNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           +++AE IR  ID +   +PA+LEIPSKD PY   KDS+    +
Sbjct: 49  EDIAEEIRETIDRYESVLPAILEIPSKDGPYGPGKDSVRELVR 91

This family includes 14-kDa subunit from vATPases, which is in the peripheral catalytic part of the complex. The family also includes archaebacterial ATP synthase subunit F. Length = 92

>gnl|CDD|224353 COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]

 Score = 63.9 bits (156), Expect = 1e-14
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 8   KGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDI 67
               +AVIGD DT  GF L G+  +         V D      D   A  + +  DDV I
Sbjct: 1   MMMKIAVIGDRDTVTGFRLAGVRVVY--------VAD---DEEDELRAALRVLAEDDVGI 49

Query: 68  ILINQNVAELIRHCID--DHTQPIPAVLEIPSK-DHPYDASKDSILRR 112
           ILI +++AE IR  I     +  +PA++EIPS      +  ++ I R 
Sbjct: 50  ILITEDLAEKIREEIRRIIRSSVLPAIVEIPSPGKEEEEPLRELIRRA 97

Length = 104

>gnl|CDD|179685 PRK03957, PRK03957, V-type ATP synthase subunit F; Provisional

 Score = 49.6 bits (119), Expect = 4e-09
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 23/108 (21%)

Query: 12  LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEA---FRKFIKRDDVDII 68
           +AV+GD DT  GF L G+ E+                V + EEA    ++ ++ D++ II
Sbjct: 3   IAVVGDRDTVTGFRLAGLTEV--------------YEVKNPEEAKNAIKELVENDEIGII 48

Query: 69  LINQNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKD---SILRRA 113
           +I + +AE IR  I      +P ++EIP K    +   D    ++RRA
Sbjct: 49  IITERIAEEIRDLISVA---LPIIVEIPDKSGSIERENDPVKELVRRA 93

Length = 100

>gnl|CDD|179293 PRK01395, PRK01395, V-type ATP synthase subunit F; Provisional

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 20/89 (22%)

Query: 13 AVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKR---DDVDIIL 69
           V+GD+D+ + F   GI          F V+D+       +EA    +++   +D  II 
Sbjct: 7  GVVGDKDSILPFKALGID--------VFPVIDE-------QEA-INTLRKLAMEDYGIIY 50

Query: 70 INQNVAELIRHCIDDH-TQPIPAVLEIPS 97
          I + +A  I   I+ +  Q +PA++ IPS
Sbjct: 51 ITEQIAADIPETIERYDNQVLPAIILIPS 79

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
TIGR01101	115	V_ATP_synt_F vacuolar ATP synthase F subunit. This	100.0
KOG3432|consensus	121		100.0
PRK01395	104	V-type ATP synthase subunit F; Provisional	99.95
PRK03957	100	V-type ATP synthase subunit F; Provisional	99.94
PF01990	95	ATP-synt_F: ATP synthase (F/14-kDa) subunit; Inter	99.93
PRK01189	104	V-type ATP synthase subunit F; Provisional	99.93
PRK02228	100	V-type ATP synthase subunit F; Provisional	99.92
COG1436	104	NtpG Archaeal/vacuolar-type H+-ATPase subunit F [E	99.87
COG4075	110	Uncharacterized conserved protein, homolog of nitr	94.01
PF10126	110	Nit_Regul_Hom: Uncharacterized protein, homolog of	88.87
CHL00129	229	rpl1 ribosomal protein L1; Reviewed	81.24
TIGR01169	227	rplA_bact ribosomal protein L1, bacterial/chloropl	80.55

>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit

Probab=100.00  E-value=3e-35  Score=207.27  Aligned_cols=109  Identities=79%  Similarity=1.238  Sum_probs=104.4

Q ss_pred             ccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhc
Q psy6439           6 AVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDH   85 (114)
Q Consensus         6 ~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~   85 (114)
                      +....+||||||+||++||||||++.++..+++||++++++|+.+|++++|++++++++||||+||+.+++++++.|++|
T Consensus         2 ~~~~~~IaVIGD~Dtv~GF~LaGi~~~~~~~~~nf~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~   81 (115)
T TIGR01101         2 AEKGKLIAVIGDEDTVVGFLLGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAH   81 (115)
T ss_pred             CCCCcEEEEEecHHHHHHHHHhCCCccccccccceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhc
Confidence            44578999999999999999999999999999999999999999999999999899999999999999999999999999


Q ss_pred             CCCccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          86 TQPIPAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        86 ~~~~P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      ++..|+|++|||+.++|.+++|||++|++
T Consensus        82 ~~~~PaIieIP~k~~~y~~~~d~i~~~~~  110 (115)
T TIGR01101        82 TRSIPAVLEIPSKDHPYDASKDSILRRAR  110 (115)
T ss_pred             CCcCCEEEEECCCCCCCCCcccHHHHHHH
Confidence            99999999999999999999999999974

This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit

>KOG3432|consensus

Probab=100.00  E-value=4.2e-33  Score=194.48  Aligned_cols=112  Identities=68%  Similarity=1.067  Sum_probs=108.8

Q ss_pred             cccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHH
Q psy6439           3 LHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCI   82 (114)
Q Consensus         3 ~~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i   82 (114)
                      .|++.+.+.||||||+||++||.|+|++.+.....+||++|+.+|+.++++++|+++.+|+|++||+|++.+|+++|+.|
T Consensus         1 ~~~a~~~~liavIgDEDT~tGfLlaGvg~v~~~r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLInq~~Ae~iR~~v   80 (121)
T KOG3432|consen    1 SHSADKRTLIAVIGDEDTVTGFLLAGVGEVNENREPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILINQFIAEMIRDRV   80 (121)
T ss_pred             CcccccCcEEEEeccccceeeeeeecccccccCCCCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEhHHHHHHHHHHH
Confidence            48999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          83 DDHTQPIPAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        83 ~~~~~~~P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      +.+++..|+|++|||++++|.+.||||++|.+
T Consensus        81 D~h~~~vPAvLeIpSKdhPYd~~kDSiL~R~r  112 (121)
T KOG3432|consen   81 DAHTQAVPAVLEIPSKDHPYDPSKDSILRRAR  112 (121)
T ss_pred             HhccccCCeeEEecCCCCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999864

>PRK01395 V-type ATP synthase subunit F; Provisional

Probab=99.95  E-value=2.4e-27  Score=164.19  Aligned_cols=93  Identities=28%  Similarity=0.425  Sum_probs=84.0

Q ss_pred             CcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcC-C
Q psy6439           9 GKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHT-Q   87 (114)
Q Consensus         9 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~-~   87 (114)
                      .+|||||||+||++||||+|++.        |++.++    ++++++++++. +++||||++||++++.+++.+++++ +
T Consensus         3 ~~kIaVIGD~dtv~GFrLaGi~~--------~~v~~~----ee~~~~i~~l~-~~d~gII~Ite~~a~~i~~~i~~~~~~   69 (104)
T PRK01395          3 MYKIGVVGDKDSILPFKALGIDV--------FPVIDE----QEAINTLRKLA-MEDYGIIYITEQIAADIPETIERYDNQ   69 (104)
T ss_pred             ceeEEEEECHHHHHHHHHcCCee--------EEecCh----HHHHHHHHHHh-cCCcEEEEEcHHHHHHhHHHHHHhcCC
Confidence            47999999999999999999986        556555    89999999876 8999999999999999999999996 6


Q ss_pred             CccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          88 PIPAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        88 ~~P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      ..|+|++|||++|+.+.+.++|.+|++
T Consensus        70 ~~P~Il~IP~~~g~~~~g~~~i~~~v~   96 (104)
T PRK01395         70 VLPAIILIPSNQGSLGIGLSRIQDNVE   96 (104)
T ss_pred             CCCEEEEeCCCCCCccccHHHHHHHHH
Confidence            899999999999998778899999874

>PRK03957 V-type ATP synthase subunit F; Provisional

Probab=99.94  E-value=4.3e-27  Score=161.63  Aligned_cols=91  Identities=31%  Similarity=0.610  Sum_probs=81.5

Q ss_pred             cEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcCCCc
Q psy6439          10 KLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHTQPI   89 (114)
Q Consensus        10 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~~~~   89 (114)
                      +|||||||+||++||||+|++.++.       + +   +++|++++|++++++++||||++|+++++.+++.++   +..
T Consensus         1 mkIaVIgD~dtv~GFrLaGi~~~~~-------v-~---~~ee~~~~l~~l~~~~d~gII~ite~~~~~i~~~i~---~~~   66 (100)
T PRK03957          1 MKIAVVGDRDTVTGFRLAGLTEVYE-------V-K---NPEEAKNAIKELVENDEIGIIIITERIAEEIRDLIS---VAL   66 (100)
T ss_pred             CEEEEEeCHHHHHHHHHcCCCceEE-------e-C---CHHHHHHHHHHHhhCCCeEEEEEcHHHHHHHHHHHh---cCC
Confidence            4899999999999999999986432       2 2   239999999999999999999999999999999887   677


Q ss_pred             cEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          90 PAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        90 P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      |+|++||+++|+++.++++|.++++
T Consensus        67 P~Ii~IP~~~g~~~~~~~~i~~~v~   91 (100)
T PRK03957         67 PIIVEIPDKSGSIERENDPVKELVR   91 (100)
T ss_pred             CEEEEECCCCCCCccchHHHHHHHH
Confidence            9999999999999999999999874

>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.93  E-value=3.6e-26  Score=154.57  Aligned_cols=92  Identities=40%  Similarity=0.657  Sum_probs=83.4

Q ss_pred             EEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhc--CCCc
Q psy6439          12 LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDH--TQPI   89 (114)
Q Consensus        12 IaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~--~~~~   89 (114)
                      ||||||+|+++||||+|+++.++        .   +++++++++|+++++++++|||++|+++++.+++.++++  ++..
T Consensus         1 IavIGd~~~v~gFrLaGv~~~~~--------~---~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~~~~~l~~~~~~~~~   69 (95)
T PF01990_consen    1 IAVIGDRDTVLGFRLAGVEGVYV--------N---TDPEEAEEALKELLKDEDVGIIIITEDLAEKIRDELDEYREESSL   69 (95)
T ss_dssp             EEEEE-HHHHHHHHHTTSEEEEE--------S---HSHHHHHHHHHHHHHHTTEEEEEEEHHHHTTHHHHHHHHHHTSSS
T ss_pred             CEEEeCHHHHHHHHHcCCCCccC--------C---CCHHHHHHHHHHHhcCCCccEEEeeHHHHHHHHHHHHHHHhccCC
Confidence            79999999999999999999543        2   134999999999999999999999999999999999999  5899


Q ss_pred             cEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          90 PAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        90 P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      |+|++||++.++++.+.++|.++||
T Consensus        70 P~iv~IP~~~~~~~~~~~~i~~~v~   94 (95)
T PF01990_consen   70 PLIVEIPSKEGSMGREKDSIRELVK   94 (95)
T ss_dssp             SEEEEESTTCCCTSSCCHHHHHHHH
T ss_pred             ceEEEcCCCCCCCCcchHHHHHHhc
Confidence            9999999999999999999998874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.

>PRK01189 V-type ATP synthase subunit F; Provisional

Probab=99.93  E-value=1.4e-25  Score=155.44  Aligned_cols=90  Identities=22%  Similarity=0.380  Sum_probs=74.4

Q ss_pred             cEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHH-HHHhhcC-C
Q psy6439          10 KLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIR-HCIDDHT-Q   87 (114)
Q Consensus        10 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~-d~i~~~~-~   87 (114)
                      +|||||||+||++||||+|++++|+++       +    ++++++ +.+.+++++||||++||++++.++ +++++|+ +
T Consensus         3 ~kIaVvGd~DtilGFrlaGi~~v~~~~-------~----~e~~~~-~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~~~   70 (104)
T PRK01189          3 SCITVIGERDVVLGFRLLGIGDTIEAE-------G----KDLVKK-FLEIFNNPKCKYIFVSESTKNMFDKNTLRSLESS   70 (104)
T ss_pred             ceEEEEcCHHHHHHHHHcCCceEEEcC-------C----HHHHHH-HHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHhcc
Confidence            689999999999999999999765432       2    266654 555667999999999999999999 7999995 8


Q ss_pred             CccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          88 PIPAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        88 ~~P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      ..|+||+||.+ |..  ++++|.+|||
T Consensus        71 ~~P~II~Ipip-g~~--~~~~i~~~ik   94 (104)
T PRK01189         71 SKPLVVFIPLP-GIS--EEESIEEMAK   94 (104)
T ss_pred             CCCeEEEEeCC-CCc--cchhHHHHHH
Confidence            99999988877 432  3789999985

>PRK02228 V-type ATP synthase subunit F; Provisional

Probab=99.92  E-value=6.1e-25  Score=150.87  Aligned_cols=89  Identities=22%  Similarity=0.391  Sum_probs=76.8

Q ss_pred             cEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh-c-CC
Q psy6439          10 KLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD-H-TQ   87 (114)
Q Consensus        10 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~-~-~~   87 (114)
                      +|||||||+||++||||+|++.++.       + +   +++|++++|++++++++||||++||++++.+.+.+.+ + ++
T Consensus         1 mkIaVIGD~dtv~GFrLaGi~~~~~-------~-~---~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~   69 (100)
T PRK02228          1 MEIAVIGSPEFTTGFRLAGIRKVYE-------V-P---DDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEES   69 (100)
T ss_pred             CEEEEEeCHHHHHHHHHcCCceEEe-------e-C---CHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcC
Confidence            5899999999999999999998532       2 2   2489999999999999999999999999999999998 4 48


Q ss_pred             CccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          88 PIPAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        88 ~~P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      ..|+|++||+.+|+     ++|.++++
T Consensus        70 ~~P~ii~IP~~~~~-----~~i~~~v~   91 (100)
T PRK02228         70 VEPTVVTLGGGGGS-----GGLREKIK   91 (100)
T ss_pred             CCCEEEEECCCccc-----hHHHHHHH
Confidence            99999999986654     67877764

>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]

Probab=99.87  E-value=2.7e-22  Score=139.23  Aligned_cols=94  Identities=36%  Similarity=0.551  Sum_probs=76.2

Q ss_pred             CcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhc--C
Q psy6439           9 GKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDH--T   86 (114)
Q Consensus         9 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~--~   86 (114)
                      .++||||||+||++||||+|++.++        ++++  ++++++++++.+.++ +||||++|+++++.+++.++++  .
T Consensus         2 ~~~I~VIGd~dtvtGFrLaGv~~~~--------v~~~--~~~~~~~~~~~l~~~-~~~iIiite~~a~~i~~~i~~~~~~   70 (104)
T COG1436           2 MMKIAVIGDRDTVTGFRLAGVRVVY--------VADD--EEDELRAALRVLAED-DVGIILITEDLAEKIREEIRRIIRS   70 (104)
T ss_pred             ceEEEEEEccchhhceeeecceeEE--------EecC--hhHHHHHHHHhhccC-CceEEEEeHHHHhhhHHHHHHHhhc
Confidence            4799999999999999999999963        2232  112688889988755 9999999999999999999999  4


Q ss_pred             CCccEEEEcCC-CCCCCCCCccchhhhc
Q psy6439          87 QPIPAVLEIPS-KDHPYDASKDSILRRA  113 (114)
Q Consensus        87 ~~~P~Iv~IP~-~~g~~~~~~d~i~~~~  113 (114)
                      +..|+|++||| ....+....+.|.|.+
T Consensus        71 ~~~P~iv~IPs~~~~~~~~~~~~I~k~v   98 (104)
T COG1436          71 SVLPAIVEIPSPGKEEEEPLRELIRRAV   98 (104)
T ss_pred             cCccEEEEeCCCCCCccchHHHHHHHHH
Confidence            88999999999 4455556666666543

>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]

Probab=94.01  E-value=0.12  Score=35.94  Aligned_cols=74  Identities=18%  Similarity=0.278  Sum_probs=48.1

Q ss_pred             HHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEE-EEehHHHHHHHHHHhhc-CCCccEEEEcCCC
Q psy6439          21 CVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDII-LINQNVAELIRHCIDDH-TQPIPAVLEIPSK   98 (114)
Q Consensus        21 v~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII-~ite~~~~~i~d~i~~~-~~~~P~Iv~IP~~   98 (114)
                      ++||-|.--.|+.+.+-++|...+   ++|.+-++++++.+ +.+-|. ++.|...+++.+.+.+- .+..=+|++||=.
T Consensus        28 iTGFfl~eYrGvsPd~wkgf~~~E---DpE~aik~i~D~s~-~AVlI~tVV~Ee~vekie~~~~Ekla~eryTIi~ipI~  103 (110)
T COG4075          28 ITGFFLHEYRGVSPDKWKGFSKEE---DPESAIKAIRDLSD-KAVLIGTVVKEEKVEKIEELLKEKLANERYTIIEIPIE  103 (110)
T ss_pred             cceEEEEEecCcChhHhcCccccc---CHHHHHHHHHHhhh-ceEEEEEecCHHHHHHHHHHHHHHhcCCceEEEEeeee
Confidence            456655555555555556666643   45888888998864 333222 45688888888877764 4555689999854

>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins

Probab=88.87  E-value=1.1  Score=31.59  Aligned_cols=72  Identities=17%  Similarity=0.296  Sum_probs=44.4

Q ss_pred             HHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEE---EEehHHHHHHHHHHhhc-CCCccEEEEcC
Q psy6439          21 CVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDII---LINQNVAELIRHCIDDH-TQPIPAVLEIP   96 (114)
Q Consensus        21 v~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII---~ite~~~~~i~d~i~~~-~~~~P~Iv~IP   96 (114)
                      ++||-|-=.+|..+.+-++|...+   +++.+-++++++.++   |++   +++++.++++.+.+.+- +...=+|+.||
T Consensus        28 ITGFyl~eYkGmSP~~wkgf~l~E---Dpe~ai~~I~d~s~~---aV~I~TVV~~~~~~~i~~~i~ekL~~eryTii~iP  101 (110)
T PF10126_consen   28 ITGFYLHEYKGMSPQDWKGFLLDE---DPEMAIKAINDLSEN---AVLIGTVVDEEKVEKIEKLIKEKLKNERYTIIEIP  101 (110)
T ss_pred             ccEEEeEeecCCChHHhcCccccc---CHHHHHHHHHHhccC---cEEEEEEECHHHHHHHHHHHHHHhcCCceEEEEee
Confidence            445555444444444445564432   357787888877532   343   46688888888888774 45555888888


Q ss_pred             CC
Q psy6439          97 SK   98 (114)
Q Consensus        97 ~~   98 (114)
                      =.
T Consensus       102 i~  103 (110)
T PF10126_consen  102 IL  103 (110)
T ss_pred             EE
Confidence            43

It includes a putative nitrogen regulatory protein PII homolog.

>CHL00129 rpl1 ribosomal protein L1; Reviewed

Probab=81.24  E-value=7.8  Score=30.18  Aligned_cols=64  Identities=16%  Similarity=0.178  Sum_probs=50.7

Q ss_pred             ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439           4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID   83 (114)
Q Consensus         4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~   83 (114)
                      |.-.+..||+|+++.+...==+-+|++.+           .    .+|+.+.+++..  .++-.++-|.++...+.. +.
T Consensus        66 ~~~gk~~kV~Vfa~~~~~~eAk~aGad~v-----------g----~edLi~~ik~~~--~~fd~~iAt~d~m~~l~k-Lg  127 (229)
T CHL00129         66 KGTGKTIRIAVLTNEEKITEAKNAGADIV-----------G----SDDLIEEITKGN--LDFDLLIATPDMMPKLAK-LG  127 (229)
T ss_pred             CCCCCCcEEEEECChHhHHHHHHcCCCEe-----------C----HHHHHHHHHcCc--ccCCEEEECHHHHHHHHH-hc
Confidence            55567899999999888877789999842           2    288888888765  578899999999988876 66


Q ss_pred             hc
Q psy6439          84 DH   85 (114)
Q Consensus        84 ~~   85 (114)
                      +.
T Consensus       128 ri  129 (229)
T CHL00129        128 RV  129 (229)
T ss_pred             Cc
Confidence            63

>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast

Probab=80.55  E-value=7.8  Score=30.05  Aligned_cols=64  Identities=16%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             ccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHh
Q psy6439           4 HSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCID   83 (114)
Q Consensus         4 ~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~   83 (114)
                      |.-.+..||+|++|.+...==+-+|++.+           .    .+|+.+.+++..  .+|-.++-|.++...+. .+.
T Consensus        65 ~~~gk~~kV~Vfa~~~~~~~Ak~aGa~~v-----------g----~~eLi~~ik~~~--~~fd~~iat~~~m~~l~-~Lg  126 (227)
T TIGR01169        65 HGTGKTVRVAVFAKGEKAEEAKAAGADYV-----------G----SDDLIEKIKKGW--LDFDVVIATPDMMRVVG-KLG  126 (227)
T ss_pred             CCCCCCcEEEEEcCchhHHHHHHcCCCEe-----------C----HHHHHHHHHcCC--ccCCEEEECHHHHHHHH-Hhc
Confidence            45567789999999888877789999843           2    288888888764  57888999999988887 566


Q ss_pred             hc
Q psy6439          84 DH   85 (114)
Q Consensus        84 ~~   85 (114)
                      +.
T Consensus       127 ~i  128 (227)
T TIGR01169       127 RI  128 (227)
T ss_pred             cc
Confidence            53

This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
2qai_A	111	Crystal Structure Of The V-Type Atp Synthase Subuni		2e-05
2i4r_A	102	Crystal Structure Of The V-Type Atp Synthase Subuni		5e-04

>pdb|2QAI|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F From Pyrococcus Furiosus. Nesg Target Pfr7. Length = 111

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 16/90 (17%)
Query: 12 LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEA---FRKFIKRDDVDII 68
          + V GD DT VGF L G+ E  ++          + S+  +E A    R+ ++RDDV II
Sbjct: 3  IVVXGDSDTVVGFRLAGVHEAYEY----------DESLESVERARNKLRELLERDDVGII 52
Query: 69 LINQNVAELIRHCIDDHTQPIPAVLEIPSK 98
          LI + +A+ I    +      P +L+IP K
Sbjct: 53 LITERLAQRIGSLPE---VKFPIILQIPDK 79

>pdb|2I4R|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F From Archaeoglobus Fulgidus. Nesg Target Gr52a. Length = 102

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 15/81 (18%)
Query: 12 LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
          LAV+GD D  +GF L GI +I +            TS  +I +A    +KRDDV +++  
Sbjct: 12 LAVVGDPDFTIGFXLAGISDIYEV-----------TSDEEIVKAVEDVLKRDDVGVVIXK 60
Query: 72 QN----VAELIRHCIDDHTQP 88
          Q     +  ++R  ID+  +P
Sbjct: 61 QEYLKKLPPVLRREIDEKVEP 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2qai_A	111	V-type ATP synthase subunit F; VATF_pyrfu, ATPF, N	3e-24
3aon_B	115	V-type sodium ATPase subunit G; V-ATPase, coiled-c	3e-21
2ov6_A	101	V-type ATP synthase subunit F; F subunit, A1AO ATP	2e-14
2i4r_A	102	V-type ATP synthase subunit F; NESG, GR52A, ATP sy	2e-14
2d00_A	109	V-type ATP synthase subunit F; V-ATPase, CHEY, FRE	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus} Length = 111

 Score = 87.9 bits (218), Expect = 3e-24
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 12  LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
           + V+GD DT VGF L G+ E        +   +   SV       R+ ++RDDV IILI 
Sbjct: 3   IVVMGDSDTVVGFRLAGVHEA-------YEYDESLESVERARNKLRELLERDDVGIILIT 55

Query: 72  QNVAELIRHCIDDHTQPIPAVLEIPSKDHPYDASKDSILRRAK 114
           + +A+ I    +      P +L+IP K       +D +    +
Sbjct: 56  ERLAQRIGSLPE---VKFPIILQIPDK-FGSIYGEDILRDVVR 94

>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae} Length = 115

 Score = 80.5 bits (199), Expect = 3e-21
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 13  AVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQ 72
            V+GD+D+   F L G              V   T+ ++I +   + + +++  +I I +
Sbjct: 6   GVVGDKDSVSPFRLFGFD------------VQHGTTKTEIRKTIDE-MAKNEYGVIYITE 52

Query: 73  NVAELIRHCIDDH-TQPIPAVLEIPSKDHPYDASKDSILRRAK 114
             A L+   I+ +  Q  PA++ IPS         + I    +
Sbjct: 53  QCANLVPETIERYKGQLTPAIILIPSHQGTLGIGLEEIQNSVE 95

>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei} Length = 101

 Score = 62.9 bits (153), Expect = 2e-14
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 12  LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
           LAVIG  +   GF L GI +           V +   +   E A R  ++   V I++++
Sbjct: 3   LAVIGKSEFVTGFRLAGISK-----------VYETPDIPATESAVRSVLEDKSVGILVMH 51

Query: 72  QNVAELIRHCIDDH--TQPIPAVLEIPSKDHPYDASKDSILRRA 113
            +    +   +  +      P V+ +        + ++ I ++A
Sbjct: 52  NDDIGNLPEVLRKNLNESVQPTVVALGGSGSGSTSLREKI-KQA 94

>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1 Length = 102

 Score = 62.4 bits (152), Expect = 2e-14
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 15/115 (13%)

Query: 1   MALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFI 60
           M  H      +LAV+GD D  +GF+L GI +I       + V        +I +A    +
Sbjct: 1   MGHHHHHHSHMLAVVGDPDFTIGFMLAGISDI-------YEVTSDE----EIVKAVEDVL 49

Query: 61  KRDDVDIILINQNVAELIRHCIDDH--TQPIPAVLEIPSKDHPYDASKDSILRRA 113
           KRDDV ++++ Q   + +   +      +  P  + +       +  ++ I R+A
Sbjct: 50  KRDDVGVVIMKQEYLKKLPPVLRREIDEKVEPTFVSVGGTGGV-EEIREKI-RKA 102

>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H* Length = 109

 Score = 59.8 bits (145), Expect = 4e-13
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 12  LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
           +AVI D +T  GF L G+          +          + +      ++R    ++ ++
Sbjct: 6   MAVIADPETAQGFRLAGLEG--------YGASSAE----EAQSLLETLVERGGYALVAVD 53

Query: 72  QNVAELIRHCIDDH--TQPIPAVLEIPSKDHPY 102
           + +       ++     + +P +L I      +
Sbjct: 54  EALLPDPERAVERLMRGRDLPVLLPIAGLKEAF 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 19 DTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELI 78
          D   G       +I    +  F+    N    D+++  +  + ++++D I+++++     
Sbjct: 8  DFETGEHQYQYKDILSVFEDAFV---DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 79 RHCID 83
               
Sbjct: 65 LRLFW 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2qai_A	111	V-type ATP synthase subunit F; VATF_pyrfu, ATPF, N	99.95
3aon_B	115	V-type sodium ATPase subunit G; V-ATPase, coiled-c	99.95
2d00_A	109	V-type ATP synthase subunit F; V-ATPase, CHEY, FRE	99.94
2i4r_A	102	V-type ATP synthase subunit F; NESG, GR52A, ATP sy	99.93
2ov6_A	101	V-type ATP synthase subunit F; F subunit, A1AO ATP	99.93

>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}

Probab=99.95  E-value=5.7e-29  Score=173.23  Aligned_cols=91  Identities=33%  Similarity=0.512  Sum_probs=77.9

Q ss_pred             cEEEEEcchhHHHHHhhccccceeccCCCceee-ecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHH--HHHhhcC
Q psy6439          10 KLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLV-VDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIR--HCIDDHT   86 (114)
Q Consensus        10 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v-v~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~--d~i~~~~   86 (114)
                      +|||||||+||++||||+|++++        ++ ++++|+.++++++|++++++++||||+||+++++.++  +.++   
T Consensus         1 MKIaVIGD~Dtv~GFrLaGi~~~--------~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~~~i~---   69 (111)
T 2qai_A            1 MKIVVMGDSDTVVGFRLAGVHEA--------YEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVK---   69 (111)
T ss_dssp             CEEEEEECHHHHHHHHHHTCSEE--------EECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSCCCCS---
T ss_pred             CEEEEEECHHHHHHHHHcCCceE--------EEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccccccC---
Confidence            58999999999999999999984        45 6777888999999999999999999999999999999  6666   


Q ss_pred             CCccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          87 QPIPAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        87 ~~~P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                        .|+|++|||++|+++ ++++|.+|++
T Consensus        70 --~P~IleIPs~~g~~~-~~d~i~~~V~   94 (111)
T 2qai_A           70 --FPIILQIPDKFGSIY-GEDILRDVVR   94 (111)
T ss_dssp             --SSEEEEECTTC-------CTHHHHHH
T ss_pred             --CCEEEEECCCCCCCc-hHHHHHHHHH
Confidence              899999999999998 9999999874

>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=99.95  E-value=7.4e-29  Score=173.37  Aligned_cols=93  Identities=24%  Similarity=0.366  Sum_probs=84.4

Q ss_pred             CcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcC-C
Q psy6439           9 GKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHT-Q   87 (114)
Q Consensus         9 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~-~   87 (114)
                      ++|||||||+||++||||+|+++        |++    ++++|++++|++++++ |||||+|||++++.+++.|++|+ +
T Consensus         2 ~mKiaVIGD~Dtv~GFrLaGie~--------~~v----~~~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~~~~~~   68 (115)
T 3aon_B            2 TYKIGVVGDKDSVSPFRLFGFDV--------QHG----TTKTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIERYKGQ   68 (115)
T ss_dssp             EEEEEEESCHHHHGGGGGGTCEE--------ECC----CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHHHHHTS
T ss_pred             ceEEEEEECHHHHHHHHHcCCeE--------EEe----CCHHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHHHHhCC
Confidence            37999999999999999999976        434    2459999999999988 99999999999999999999996 5


Q ss_pred             CccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          88 PIPAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        88 ~~P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      ..|+|++|||++|+++.++|+|.+|++
T Consensus        69 ~~P~IveIPs~~g~~~~~~~~i~~~V~   95 (115)
T 3aon_B           69 LTPAIILIPSHQGTLGIGLEEIQNSVE   95 (115)
T ss_dssp             SSCEEEEECBTTBCCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCccHHHHHHHHH
Confidence            699999999999999889999999874

>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*

Probab=99.94  E-value=1.2e-28  Score=170.68  Aligned_cols=93  Identities=15%  Similarity=0.307  Sum_probs=85.2

Q ss_pred             CcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcC--
Q psy6439           9 GKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHT--   86 (114)
Q Consensus         9 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~--   86 (114)
                      ++|||||||+||++||||+|+++        |++    ++++|++++|+++++++|||||++|+++++.+++.+++|+  
T Consensus         3 ~mkiaVIgD~dtv~GFrLaGi~~--------~~v----~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~   70 (109)
T 2d00_A            3 PVRMAVIADPETAQGFRLAGLEG--------YGA----SSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRG   70 (109)
T ss_dssp             CCCEEEEECHHHHHHHHHTTSEE--------EEC----SSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTC
T ss_pred             ccEEEEEeCHHHHHHHHHcCCeE--------EEe----CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhC
Confidence            68999999999999999999976        434    2459999999999999999999999999999999999994  


Q ss_pred             CCccEEEEcCCCC---CCCCCCccchhhhcC
Q psy6439          87 QPIPAVLEIPSKD---HPYDASKDSILRRAK  114 (114)
Q Consensus        87 ~~~P~Iv~IP~~~---g~~~~~~d~i~~~~~  114 (114)
                      +..|+|++|||++   |++ .++++|.+|++
T Consensus        71 ~~~P~Il~IPs~~~~~g~~-~~~~~i~~~V~  100 (109)
T 2d00_A           71 RDLPVLLPIAGLKEAFQGH-DVEGYMRELVR  100 (109)
T ss_dssp             CCCCEEEEESCGGGGGSSS-CHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcccCCCc-chHHHHHHHHH
Confidence            8899999999999   999 99999999874

>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1

Probab=99.93  E-value=9.4e-27  Score=159.78  Aligned_cols=97  Identities=27%  Similarity=0.467  Sum_probs=70.6

Q ss_pred             CcccccCCcEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHH
Q psy6439           2 ALHSAVKGKLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHC   81 (114)
Q Consensus         2 ~~~~~~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~   81 (114)
                      .-|.-..++-+|||||+||++||||+|+++++.       +    ++++|++++|+++++++|||||+|||++++.+++.
T Consensus         2 ~~~~~~~~~~~aVIGD~Dtv~GFrLaGi~~~~~-------~----~~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~   70 (102)
T 2i4r_A            2 GHHHHHHSHMLAVVGDPDFTIGFMLAGISDIYE-------V----TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPV   70 (102)
T ss_dssp             -------CCEEEEEECHHHHHHHHHTTCCCEEE-------C----CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHH
T ss_pred             CccccccceeEEEEcCHHHHHHHHHcCCCcccC-------C----CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHH
Confidence            334444578999999999999999999999531       1    34599999999999999999999999999999999


Q ss_pred             HhhcCC--CccEEEEcCCCCCCCCCCccchh
Q psy6439          82 IDDHTQ--PIPAVLEIPSKDHPYDASKDSIL  110 (114)
Q Consensus        82 i~~~~~--~~P~Iv~IP~~~g~~~~~~d~i~  110 (114)
                      |++|+.  ..|+|++|||++|+. .-+++|-
T Consensus        71 i~~~~~~~~~P~IieIPs~~g~~-~i~~~V~  100 (102)
T 2i4r_A           71 LRREIDEKVEPTFVSVGGTGGVE-EIREKIR  100 (102)
T ss_dssp             HHTTTTTCCSSEEEEEC--------------
T ss_pred             HHHHHhCCCccEEEEECCCCCCc-cHHhHhh
Confidence            999963  899999999999984 4455543

>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}

Probab=99.93  E-value=4.1e-27  Score=160.80  Aligned_cols=90  Identities=22%  Similarity=0.390  Sum_probs=78.6

Q ss_pred             cEEEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHH-hhcC-C
Q psy6439          10 KLLAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCI-DDHT-Q   87 (114)
Q Consensus        10 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i-~~~~-~   87 (114)
                      +|||||||+||++||||+|+++++       ++.+    ++|++++|++++++++||||++||++++.+++.+ +.+. +
T Consensus         1 MkiaVIGD~dtv~GFrLaGi~~v~-------~v~~----~ee~~~~~~~l~~~~digIIlite~~a~~i~~~i~~~~~~~   69 (101)
T 2ov6_A            1 MELAVIGKSEFVTGFRLAGISKVY-------ETPD----IPATESAVRSVLEDKSVGILVMHNDDIGNLPEVLRKNLNES   69 (101)
T ss_dssp             CCEEEEECHHHHHHHHHHTCCEEE-------ECCS----TTTHHHHHHHHHHHTSSSEEEEEHHHHTTCTTTTHHHHHHH
T ss_pred             CEEEEEECHHHHHHHHHcCCCceE-------ecCC----HHHHHHHHHHHhhCCCeEEEEEcHHHHHHhHHHHHHHHhCC
Confidence            489999999999999999999863       3323    3899999999999999999999999999999999 5554 7


Q ss_pred             CccEEEEcCCCCCCCCCCccchhhhcC
Q psy6439          88 PIPAVLEIPSKDHPYDASKDSILRRAK  114 (114)
Q Consensus        88 ~~P~Iv~IP~~~g~~~~~~d~i~~~~~  114 (114)
                      ..|+|++|||++    +++++|.+|++
T Consensus        70 ~~P~Iv~IP~~~----~~~~~i~~~v~   92 (101)
T 2ov6_A           70 VQPTVVALGGSG----SGSTSLREKIK   92 (101)
T ss_dssp             CCSCEEEECTTS----SCCCCCCCCCS
T ss_pred             CCcEEEEECCCC----CChhHHHHHHH
Confidence            899999999998    44489999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d2d00a1	104	c.149.1.1 (A:6-109) V-type ATP synthase subunit F,	4e-22
d2i4ra1	76	c.149.1.1 (A:4-79) V-type ATP synthase subunit F,	2e-16

>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]} Length = 104

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Thermus thermophilus [TaxId: 274]

 Score = 81.3 bits (201), Expect = 4e-22
 Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 16/107 (14%)

Query: 12  LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
           +AVI D +T  GF L G+                 +S  + +      ++R    ++ ++
Sbjct: 1   MAVIADPETAQGFRLAGLEGYGA------------SSAEEAQSLLETLVERGGYALVAVD 48

Query: 72  QNVAELIRHCIDDHT--QPIPAVLEIPSKDHPYDAS--KDSILRRAK 114
           + +       ++     + +P +L I      +     +  +    +
Sbjct: 49  EALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVR 95

>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]} Length = 76

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 66.2 bits (162), Expect = 2e-16
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 13/86 (15%)

Query: 12 LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN 71
          LAV+GD D  +GF+L GI +I       + V        +I +A    +KRDDV ++++ 
Sbjct: 1  LAVVGDPDFTIGFMLAGISDI-------YEVTSDE----EIVKAVEDVLKRDDVGVVIMK 49

Query: 72 QNVAELIRHCIDD--HTQPIPAVLEI 95
          Q   + +   +      +  P  + +
Sbjct: 50 QEYLKKLPPVLRREIDEKVEPTFVSV 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2d00a1	104	V-type ATP synthase subunit F, AtpF {Thermus therm	99.92
d2i4ra1	76	V-type ATP synthase subunit F, AtpF {Archaeoglobus	99.88
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	85.62
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	84.63

>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=9.3e-27  Score=158.16  Aligned_cols=91  Identities=15%  Similarity=0.362  Sum_probs=79.5

Q ss_pred             EEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhhcC--CCc
Q psy6439          12 LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDDHT--QPI   89 (114)
Q Consensus        12 IaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~~~--~~~   89 (114)
                      ||||||+||++||||+|+++        |++.    +++|++++|++++++++||||+|||++++.+++.+++++  +..
T Consensus         1 IaViGd~dtv~GFrLaGi~~--------~~v~----~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~~~i~~~~~~~~~   68 (104)
T d2d00a1           1 MAVIADPETAQGFRLAGLEG--------YGAS----SAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDL   68 (104)
T ss_dssp             EEEEECHHHHHHHHHTTSEE--------EECS----SHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTCCCC
T ss_pred             CEEEcCHHHHHHHHHcCCee--------ecCC----CHHHHHHHHHHHHhCCCeEEEEEcHHHHHhhHHHHHHHHhcCCC
Confidence            79999999999999999987        3342    349999999999999999999999999999999999994  678


Q ss_pred             cEEEEcCCCCCCCCC--CccchhhhcC
Q psy6439          90 PAVLEIPSKDHPYDA--SKDSILRRAK  114 (114)
Q Consensus        90 P~Iv~IP~~~g~~~~--~~d~i~~~~~  114 (114)
                      |+|++||+++|+++.  .+++|.++++
T Consensus        69 P~Il~IP~~~g~~~~~~~~~~ir~~v~   95 (104)
T d2d00a1          69 PVLLPIAGLKEAFQGHDVEGYMRELVR   95 (104)
T ss_dssp             CEEEEESCGGGGGSSSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCCCcchHHHHHHHHHH
Confidence            999999999998644  4467887764

>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=1.6e-23  Score=135.36  Aligned_cols=74  Identities=30%  Similarity=0.570  Sum_probs=64.9

Q ss_pred             EEEEcchhHHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEehHHHHHHHHHHhh-cC-CCc
Q psy6439          12 LAVIGDEDTCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILINQNVAELIRHCIDD-HT-QPI   89 (114)
Q Consensus        12 IaVIGD~dtv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~ite~~~~~i~d~i~~-~~-~~~   89 (114)
                      ||||||+||++||||||++++       |++.+    +++++++|+++++++|||||++|+++++++++.+.+ ++ +..
T Consensus         1 IaViGd~dtv~GF~LaGi~~~-------~~v~~----~ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~~~~~~   69 (76)
T d2i4ra1           1 LAVVGDPDFTIGFMLAGISDI-------YEVTS----DEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVE   69 (76)
T ss_dssp             EEEEECHHHHHHHHHTTCCCE-------EECCS----HHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCCS
T ss_pred             CEEEechHHHHHHHHhCCCcc-------ccCCC----HHHHHHHHHHHhcCCCeEEEEEeHHHHHHhhHHHHHHHhcCCC
Confidence            799999999999999999875       33333    499999999999999999999999999999998855 43 889


Q ss_pred             cEEEEcC
Q psy6439          90 PAVLEIP   96 (114)
Q Consensus        90 P~Iv~IP   96 (114)
                      |+|++|.
T Consensus        70 P~Vi~Ig   76 (76)
T d2i4ra1          70 PTFVSVG   76 (76)
T ss_dssp             SEEEEEC
T ss_pred             CEEEecC
Confidence            9999984

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.62  E-value=1.9  Score=28.94  Aligned_cols=83  Identities=23%  Similarity=0.339  Sum_probs=61.7

Q ss_pred             EEEEEcchh-----HHHHHhhccccceeccCCCceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe--------hHHHHH
Q psy6439          11 LLAVIGDED-----TCVGFLLGGIGEINKHRQPNFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN--------QNVAEL   77 (114)
Q Consensus        11 kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~nf~vv~~~~~~ee~~~~l~~l~~~~digII~it--------e~~~~~   77 (114)
                      .|+++++=.     |.=-.+..|-+.      -||.=+-...+.+.+.++|+-+++++++-.|+|+        +.+++-
T Consensus        20 ~IG~i~NGAGlaMaTmD~i~~~Gg~p------ANFlDiGGga~~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~vA~G   93 (148)
T d1eucb1          20 NIACFVNGAGLAMATCDIIFLNGGKP------ANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANG   93 (148)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHTTCCB------SEEEECCSSCCHHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHHHHHH
T ss_pred             cEEEEecCCccchhHHHHHHHcCCCe------eeEEecCCCCCHHHHHHHHHHHHCCCCccEEEEEeeEeehhHHHHHHH
Confidence            467776632     222233444443      3688887778889999999999999999999987        457888


Q ss_pred             HHHHHhhcCCCccEEEEcCCCC
Q psy6439          78 IRHCIDDHTQPIPAVLEIPSKD   99 (114)
Q Consensus        78 i~d~i~~~~~~~P~Iv~IP~~~   99 (114)
                      +-+.+.+.....|+||-+-+.+
T Consensus        94 Iv~A~~e~~~~iPiVVRL~Gtn  115 (148)
T d1eucb1          94 ITKACRELELKVPLVVRLEGTN  115 (148)
T ss_dssp             HHHHHHHHTCCSCEEEEEESTT
T ss_pred             HHHHHHhcCCCccEEEEeccCC
Confidence            8777887777799999887664

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.63  E-value=2.5  Score=28.32  Aligned_cols=61  Identities=25%  Similarity=0.449  Sum_probs=51.3

Q ss_pred             ceeeecCCCCHHHHHHHHHHhhcCCCeEEEEEe--------hHHHHHHHHHHhhcCCCccEEEEcCCCC
Q psy6439          39 NFLVVDKNTSVSDIEEAFRKFIKRDDVDIILIN--------QNVAELIRHCIDDHTQPIPAVLEIPSKD   99 (114)
Q Consensus        39 nf~vv~~~~~~ee~~~~l~~l~~~~digII~it--------e~~~~~i~d~i~~~~~~~P~Iv~IP~~~   99 (114)
                      ||.-+--..+.+.+.++|+-+++++++-.|+|+        +.+++-+-+.+.+.....|+||-+-+.+
T Consensus        47 NFlDiGG~a~~e~v~~al~lil~d~~vk~IlINifGGI~rcd~vA~GIv~A~k~~~~~iPiVVRl~Gtn  115 (150)
T d2nu7b1          47 NFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNN  115 (150)
T ss_dssp             EEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTT
T ss_pred             EEEecCCCccHHHHHHHHHHHHcCCCCCEEEEEEeeeeehhHHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            688887778889999999999999999999996        4577777777777777789999887664