Psyllid ID: psy6444

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK
Secondary Structure (PSIPRED)
cccccEEcEEcccccccccEEEEccccccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccccccEEEEEEccccccccEEEEEccccccEEEccccccEEEEEcccccEEEEEEEcccHHHHEcccccccEEEcc
Coil and Loop (DISEMBL)
masirqipltcsghtrpvvhLAFSDITESGYFLISackdgkpmlrqgdtgdwigtfeghkgcvwgvdinkdaskaaSGAADFQAKALK
Flexible Loop (DISEMBL)
masirqipltcsghtrpVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK
Low Complexity Region (SEG)
MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINkdaskaasgaadfqakaLK
Disordered region (IsUnstruct)
******IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN*******************
Disordered Region (DISOPRED)
**SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK
Disordered Region (DISEMBL)
MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA****************
Disordered Region (DISPRO)
****RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q5E959	350	Serine-threonine kinase r	yes	N/A	0.761	0.191	0.820	6e-28
Q5XIG8	350	Serine-threonine kinase r	yes	N/A	0.761	0.191	0.820	6e-28
Q9Z1Z2	350	Serine-threonine kinase r	yes	N/A	0.761	0.191	0.820	7e-28
Q5ZL33	350	Serine-threonine kinase r	yes	N/A	0.761	0.191	0.805	7e-28
Q9Y3F4	350	Serine-threonine kinase r	yes	N/A	0.761	0.191	0.820	8e-28
Q54LT8	293	Serine-threonine kinase r	yes	N/A	0.920	0.276	0.573	3e-22
Q38884	328	Eukaryotic translation in	no	N/A	0.852	0.228	0.384	9e-10
A7RM20	321	Eukaryotic translation in	N/A	N/A	0.806	0.221	0.364	2e-08
B4Q354	326	Eukaryotic translation in	N/A	N/A	0.852	0.230	0.346	3e-08
B4I195	326	Eukaryotic translation in	N/A	N/A	0.852	0.230	0.346	3e-08

>sp|Q5E959|STRAP_BOVIN Serine-threonine kinase receptor-associated protein OS=Bos taurus GN=STRAP PE=2 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query: 3  SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
          ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct: 2  AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query: 63 VWGVDIN 69
          VWG  +N
Sbjct: 62 VWGATLN 68

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.
Bos taurus (taxid: 9913)

>sp|Q5XIG8|STRAP_RAT Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query: 3  SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
          ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct: 2  AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query: 63 VWGVDIN 69
          VWG  +N
Sbjct: 62 VWGATLN 68

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein OS=Mus musculus GN=Strap PE=1 SV=2

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query: 3  SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
          ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct: 2  AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query: 63 VWGVDIN 69
          VWG  +N
Sbjct: 62 VWGATLN 68

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Mus musculus (taxid: 10090)

>sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associated protein OS=Gallus gallus GN=STRAP PE=2 SV=2

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 58/67 (86%)

Query: 3  SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
          ++RQ PLTCSGHTRPVV LAFS +T  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct: 2  AMRQTPLTCSGHTRPVVDLAFSGVTPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query: 63 VWGVDIN 69
          VWG  +N
Sbjct: 62 VWGATLN 68

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.

Gallus gallus (taxid: 9031)

>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query: 3  SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
          ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct: 2  AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query: 63 VWGVDIN 69
          VWG  +N
Sbjct: 62 VWGATLN 68

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Homo sapiens (taxid: 9606)

>sp|Q54LT8|STRAP_DICDI Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 4  IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV 63
          +RQ PL CSGH+RPV  L+FS+    G F++SAC DG PMLR G+ GDWIGTFEGHKG V
Sbjct: 1  MRQ-PLICSGHSRPVSDLSFSNENSDGSFIVSACLDGSPMLRNGENGDWIGTFEGHKGAV 59

Query: 64 WGVDINKDASKAASGAADFQAK 85
          W    N  AS+A + +AD+  K
Sbjct: 60 WSSRFNSTASQALTASADYTVK 81

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.

Dictyostelium discoideum (taxid: 44689)

>sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 8  PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVD 67
          P+   GH RP+  L ++     G  L S  KD  P L   D G+ +GT+ GH G VW  D
Sbjct: 3  PILMKGHERPLTFLRYN---REGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCD 59

Query: 68 INKDASKAASGAADFQAK 85
          +++D+S+  +G+AD  AK
Sbjct: 60 VSRDSSRLITGSADQTAK 77

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Arabidopsis thaliana (taxid: 3702)

>sp|A7RM20|EIF3I_NEMVE Eukaryotic translation initiation factor 3 subunit I OS=Nematostella vectensis GN=v1g239264 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 8  PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVD 67
          PL   GH R +  + ++ +   G  L SA KD +P +     G+ +GT+ GH G VW +D
Sbjct: 3  PLALHGHERNITQIKYNRM---GDLLFSAAKDTRPTVWYSLNGERLGTYNGHGGAVWCID 59

Query: 68 INKDASKAASGAAD 81
          +N D ++  SG AD
Sbjct: 60 VNYDTTQFISGGAD 73

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Nematostella vectensis (taxid: 45351)

>sp|B4Q354|EIF3I_DROSI Eukaryotic translation initiation factor 3 subunit I OS=Drosophila simulans GN=Trip1 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 8  PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVD 67
          PL   GH R +  + ++     G  L S  KD KP +     G+ +GT++GH+G VW +D
Sbjct: 3  PLMLQGHERSITQIKYN---REGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLD 59

Query: 68 INKDASKAASGAADFQAK 85
          ++ ++ K  +GA D  AK
Sbjct: 60 VDWESRKLITGAGDMTAK 77

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila simulans (taxid: 7240)

>sp|B4I195|EIF3I_DROSE Eukaryotic translation initiation factor 3 subunit I OS=Drosophila sechellia GN=Trip1 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 8  PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVD 67
          PL   GH R +  + ++     G  L S  KD KP +     G+ +GT++GH+G VW +D
Sbjct: 3  PLMLQGHERSITQIKYN---REGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLD 59

Query: 68 INKDASKAASGAADFQAK 85
          ++ ++ K  +GA D  AK
Sbjct: 60 VDWESRKLITGAGDMTAK 77

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
48122105	330	PREDICTED: serine-threonine kinase recep	0.977	0.260	0.848	9e-38
383860171	330	PREDICTED: serine-threonine kinase recep	0.965	0.257	0.858	9e-38
332026419	330	Serine-threonine kinase receptor-associa	0.977	0.260	0.837	1e-37
350407099	330	PREDICTED: serine-threonine kinase recep	0.977	0.260	0.848	1e-37
322798692	328	hypothetical protein SINV_00798 [Solenop	0.977	0.262	0.837	2e-37
307195163	330	Serine-threonine kinase receptor-associa	0.977	0.260	0.825	2e-37
307171562	329	Serine-threonine kinase receptor-associa	0.977	0.261	0.825	3e-37
340729402	330	PREDICTED: serine-threonine kinase recep	0.977	0.260	0.837	4e-37
156549522	329	PREDICTED: serine-threonine kinase recep	0.977	0.261	0.813	8e-37
91089487	327	PREDICTED: similar to serine-threonine k	0.977	0.262	0.825	2e-36

>gi|48122105|ref|XP_396504.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Apis mellifera] gi|380014107|ref|XP_003691084.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Apis florea]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/86 (84%), Positives = 79/86 (91%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MA++RQ PLTCSGHTRPVVHLAFSDITESGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MANLRQTPLTCSGHTRPVVHLAFSDITESGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +N  A++AASGAADF AK 
Sbjct: 61 GAVWGVALNPQATRAASGAADFNAKV 86

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860171|ref|XP_003705564.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Megachile rotundata]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 79/85 (92%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MA++RQ PLTCSGHTRPVVHLAFSDITESGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MANLRQTPLTCSGHTRPVVHLAFSDITESGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAK 85
          G VWGV +N  A++AASGAADF AK
Sbjct: 61 GAVWGVALNPQATRAASGAADFNAK 85

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026419|gb|EGI66547.1| Serine-threonine kinase receptor-associated protein [Acromyrmex echinatior]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 79/86 (91%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MAS+RQ PLTCSGHTRPVVHLAFSD+TESGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MASLRQTPLTCSGHTRPVVHLAFSDVTESGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +N  A++AA+GAADF AK 
Sbjct: 61 GAVWGVALNPQATRAATGAADFNAKV 86

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407099|ref|XP_003487985.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Bombus impatiens]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/86 (84%), Positives = 79/86 (91%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MA++RQ PLTCSGHTRPVVHLAFSDITESGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MANLRQTPLTCSGHTRPVVHLAFSDITESGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +N  A++AASGAADF AK 
Sbjct: 61 GAVWGVALNPRATRAASGAADFNAKV 86

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798692|gb|EFZ20290.1| hypothetical protein SINV_00798 [Solenopsis invicta]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 79/86 (91%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MAS+RQ PLTCSGHTRPVVHLAFSD+TESGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MASLRQTPLTCSGHTRPVVHLAFSDVTESGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +N  A++AA+GAADF AK 
Sbjct: 61 GAVWGVALNPQATRAATGAADFNAKV 86

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195163|gb|EFN77156.1| Serine-threonine kinase receptor-associated protein [Harpegnathos saltator]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 79/86 (91%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MA++RQ PLTCSGHTRPVVHLAFSD+TESGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MANLRQTPLTCSGHTRPVVHLAFSDVTESGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +N  A++AA+GAADF AK 
Sbjct: 61 GAVWGVALNPQATRAATGAADFNAKV 86

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171562|gb|EFN63377.1| Serine-threonine kinase receptor-associated protein [Camponotus floridanus]

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 79/86 (91%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MA++RQ PLTCSGHTRPVVHLAFSD+TESGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MANLRQTPLTCSGHTRPVVHLAFSDVTESGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +N  A++AA+GAADF AK 
Sbjct: 61 GAVWGVALNPQATRAATGAADFNAKV 86

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729402|ref|XP_003402993.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Bombus terrestris]

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 79/86 (91%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MA+++Q PLTCSGHTRPVVHLAFSDITESGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MANLKQTPLTCSGHTRPVVHLAFSDITESGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +N  A++AASGAADF AK 
Sbjct: 61 GAVWGVALNPRATRAASGAADFNAKV 86

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549522|ref|XP_001600320.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Nasonia vitripennis]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 79/86 (91%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MA++RQ PLTCSGHTRPVVHL FSD+T+SGY+LISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MANLRQTPLTCSGHTRPVVHLHFSDVTDSGYYLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +N +A+KAA+GAADF AK 
Sbjct: 61 GAVWGVALNSEATKAATGAADFNAKV 86

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089487|ref|XP_969569.1| PREDICTED: similar to serine-threonine kinase receptor-associated protein [Tribolium castaneum] gi|270012578|gb|EFA09026.1| hypothetical protein TcasGA2_TC006736 [Tribolium castaneum]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 77/86 (89%)

Query: 1  MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60
          MA++RQ PLTCSGHTRPVVHL FS +T+ GYFLISACKDGKPMLRQGDTGDWIGTFEGHK
Sbjct: 1  MANLRQTPLTCSGHTRPVVHLDFSSVTKYGYFLISACKDGKPMLRQGDTGDWIGTFEGHK 60

Query: 61 GCVWGVDINKDASKAASGAADFQAKA 86
          G VWGV +NKDA+KAASGAADF  K 
Sbjct: 61 GAVWGVALNKDATKAASGAADFTGKV 86

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0034876	328	wmd "wing morphogenesis defect	0.761	0.204	0.791	8.2e-28
UNIPROTKB|Q5E959	350	STRAP "Serine-threonine kinase	0.761	0.191	0.820	4.5e-27
UNIPROTKB|E2RBU1	350	STRAP "Uncharacterized protein	0.761	0.191	0.820	4.5e-27
UNIPROTKB|Q9Y3F4	350	STRAP "Serine-threonine kinase	0.761	0.191	0.820	4.5e-27
MGI|MGI:1329037	350	Strap "serine/threonine kinase	0.761	0.191	0.820	4.5e-27
RGD|1311114	350	Strap "serine/threonine kinase	0.761	0.191	0.820	4.5e-27
ZFIN|ZDB-GENE-040426-1110	329	strap "serine/threonine kinase	0.761	0.203	0.820	4.5e-27
UNIPROTKB|Q5ZL33	350	STRAP "Serine-threonine kinase	0.761	0.191	0.805	5.7e-27
UNIPROTKB|B4DNJ6	363	STRAP "Serine-threonine kinase	0.761	0.184	0.687	1.4e-23
UNIPROTKB|I3LNC4	363	STRAP "Uncharacterized protein	0.761	0.184	0.675	7.8e-23

FB|FBgn0034876 wmd "wing morphogenesis defect" [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 53/67 (79%), Positives = 59/67 (88%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
             ++RQIPLTCSGHTRPVVHL FSDI ++GYFLISACKDG PMLR GDTGDW+GTFEGHKG 
Sbjct:     5 NLRQIPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGDTGDWVGTFEGHKGA 64

Query:    63 VWGVDIN 69
             VW   +N
Sbjct:    65 VWNATLN 71

GO:0005102 "receptor binding" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|Q5E959 STRAP "Serine-threonine kinase receptor-associated protein" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
             ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query:    63 VWGVDIN 69
             VWG  +N
Sbjct:    62 VWGATLN 68

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

UNIPROTKB|E2RBU1 STRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
             ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query:    63 VWGVDIN 69
             VWG  +N
Sbjct:    62 VWGATLN 68

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9Y3F4 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
             ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query:    63 VWGVDIN 69
             VWG  +N
Sbjct:    62 VWGATLN 68

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

MGI|MGI:1329037 Strap "serine/threonine kinase receptor associated protein" [Mus musculus (taxid:10090)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
             ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query:    63 VWGVDIN 69
             VWG  +N
Sbjct:    62 VWGATLN 68

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005102 "receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

RGD|1311114 Strap "serine/threonine kinase receptor associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
             ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query:    63 VWGVDIN 69
             VWG  +N
Sbjct:    62 VWGATLN 68

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030054 "cell junction" evidence=ISO

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA;ISO

ZFIN|ZDB-GENE-040426-1110 strap "serine/threonine kinase receptor associated protein" [Danio rerio (taxid:7955)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
             ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query:    63 VWGVDIN 69
             VWG  +N
Sbjct:    62 VWGATLN 68

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|Q5ZL33 STRAP "Serine-threonine kinase receptor-associated protein" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 54/67 (80%), Positives = 58/67 (86%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC 62
             ++RQ PLTCSGHTRPVV LAFS +T  GYFLISACKDGKPMLRQGDTGDWIGTF GHKG 
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGVTPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGA 61

Query:    63 VWGVDIN 69
             VWG  +N
Sbjct:    62 VWGATLN 68

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005102 "receptor binding" evidence=ISS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

UNIPROTKB|B4DNJ6 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 55/80 (68%), Positives = 58/80 (72%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACK-------------DGKPMLRQGDT 49
             ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACK             DGKPMLRQGDT
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKGAGQHLPRLSGQHDGKPMLRQGDT 61

Query:    50 GDWIGTFEGHKGCVWGVDIN 69
             GDWIGTF GHKG VWG  +N
Sbjct:    62 GDWIGTFLGHKGAVWGATLN 81

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|I3LNC4 STRAP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 54/80 (67%), Positives = 57/80 (71%)

Query:     3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKD-------------GKPMLRQGDT 49
             ++RQ PLTCSGHTRPVV LAFS IT  GYFLISACK              GKPMLRQGDT
Sbjct:     2 AMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKGFTVHLPRRPGQHHGKPMLRQGDT 61

Query:    50 GDWIGTFEGHKGCVWGVDIN 69
             GDWIGTF GHKG VWG  +N
Sbjct:    62 GDWIGTFLGHKGAVWGATLN 81

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y3F4	STRAP_HUMAN	No assigned EC number	0.8208	0.7613	0.1914	yes	N/A
Q9Z1Z2	STRAP_MOUSE	No assigned EC number	0.8208	0.7613	0.1914	yes	N/A
Q5E959	STRAP_BOVIN	No assigned EC number	0.8208	0.7613	0.1914	yes	N/A
Q5ZL33	STRAP_CHICK	No assigned EC number	0.8059	0.7613	0.1914	yes	N/A
Q54LT8	STRAP_DICDI	No assigned EC number	0.5731	0.9204	0.2764	yes	N/A
Q5XIG8	STRAP_RAT	No assigned EC number	0.8208	0.7613	0.1914	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 10  TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
           T  GH   V  +AFS     GY L S  +DG   +    TG+ + T  GH   V  +  +
Sbjct: 214 TLRGHENGVNSVAFSP---DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270

Query: 70  KDASKAASGAADFQAK 85
            D  + ASG+AD   +
Sbjct: 271 PDGKRLASGSADGTIR 286

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 10  TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
           T  GHT  V  +AFS     G F+ S+ +DG   L    TG  + T  GH G V  V  +
Sbjct: 130 TLRGHTDWVNSVAFS---PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186

Query: 70  KDASKAASGAADFQAK 85
            D  K  S ++D   K
Sbjct: 187 PDGEKLLSSSSDGTIK 202

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 10  TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
           T +GHT  V  +AFS     G  L+S+  DG   L    TG  +GT  GH+  V  V  +
Sbjct: 172 TLTGHTGEVNSVAFSP---DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228

Query: 70  KDASKAASGAAD 81
            D    ASG+ D
Sbjct: 229 PDGYLLASGSED 240

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
          T  GHT  V  +AFS   +    L +   DG   +   +TG+ + T +GH G V  V  +
Sbjct: 4  TLKGHTGGVTCVAFSPDGK---LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 70 KDASKAASGAADFQAK 85
           D +  ASG++D   +
Sbjct: 61 ADGTYLASGSSDKTIR 76

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 6   QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWG 65
           ++  T  GHT PV  +A S       +L S   D    L   +TG+ + T  GH   V  
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGT---YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS 98

Query: 66  VDINKDASKAASGAADFQAK 85
           V  + D    +S + D   K
Sbjct: 99  VAFSPDGRILSSSSRDKTIK 118

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 5   RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG--TFEGHKGC 62
             +  T SGH+  V+ +AFS     G  L S   DG   L   +TG  +   T +GH+G 
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330

Query: 63  VWGVDINKDASKAASGAAD 81
           V  +  + D S   SG +D
Sbjct: 331 VSSLSFSPDGSLLVSGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 36.2 bits (82), Expect = 9e-04
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 7   IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPML-RQGDTGDWIGTFEGHKGCVWG 65
           +  T SGH+  VV     D    G  L S   DG   L     +   + T  GH   V  
Sbjct: 234 LRSTLSGHSDSVVSSFSPD----GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289

Query: 66  VDINKDASKAASGAADFQAK 85
           V  + D    ASG++D   +
Sbjct: 290 VAFSPDGKLLASGSSDGTVR 309

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 13  GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA 72
           GHT  V  +AFS     G  L S+ +D    +   +TG  + T  GH   V  V  + D 
Sbjct: 91  GHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147

Query: 73  SKAASGAADFQAK 85
           +  AS + D   K
Sbjct: 148 TFVASSSQDGTIK 160

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 12  SGHTRPVVHLAFSDITESGYFLISA-CKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK 70
            GH+  V  LAFS     G  L S    DG   L    TG  + T  GH   V  +  + 
Sbjct: 152 EGHSESVTSLAFS---PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 71  DASKAASGAAD 81
           D     +  + 
Sbjct: 209 DGGLLIASGSS 219

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG0271|consensus	480		99.8
KOG0263|consensus	707		99.8
KOG0271|consensus	480		99.77
KOG0266|consensus	456		99.76
KOG0263|consensus	707		99.76
KOG0286|consensus	343		99.74
KOG0272|consensus	459		99.74
KOG0279|consensus	315		99.73
PTZ00421	493	coronin; Provisional	99.71
KOG0295|consensus	406		99.7
KOG0318|consensus	603		99.69
KOG0272|consensus	459		99.67
KOG0266|consensus	456		99.66
KOG0316|consensus	307		99.65
KOG0643|consensus	327		99.63
KOG0319|consensus	775		99.63
PTZ00421	493	coronin; Provisional	99.62
KOG0303|consensus	472		99.62
KOG0291|consensus	893		99.61
PTZ00420	568	coronin; Provisional	99.61
KOG0284|consensus	464		99.6
KOG0283|consensus	712		99.6
KOG1445|consensus	1012		99.6
KOG0277|consensus	311		99.59
KOG1034|consensus	385		99.59
KOG0282|consensus	503		99.59
KOG0264|consensus	422		99.59
KOG0279|consensus	315		99.58
KOG0315|consensus	311		99.58
KOG0285|consensus	460		99.57
KOG0292|consensus	1202		99.57
PTZ00420	568	coronin; Provisional	99.57
KOG0285|consensus	460		99.56
KOG0265|consensus	338		99.56
KOG0315|consensus	311		99.56
KOG0273|consensus	524		99.56
KOG0645|consensus	312		99.55
KOG0316|consensus	307		99.55
KOG0265|consensus	338		99.54
KOG0645|consensus	312		99.54
KOG0273|consensus	524		99.53
KOG0286|consensus	343		99.52
KOG0276|consensus	794		99.52
KOG0284|consensus	464		99.52
KOG0302|consensus	440		99.51
KOG0292|consensus	1202		99.51
KOG0276|consensus	794		99.5
KOG1407|consensus	313		99.5
KOG0277|consensus	311		99.5
KOG0278|consensus	334		99.5
KOG0295|consensus	406		99.48
KOG0973|consensus	942		99.48
KOG0281|consensus	499		99.48
KOG0319|consensus	775		99.48
KOG0281|consensus	499		99.47
KOG0296|consensus	399		99.46
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.46
KOG0291|consensus	893		99.46
KOG0647|consensus	347		99.46
KOG0282|consensus	503		99.45
KOG1273|consensus	405		99.44
KOG0264|consensus	422		99.44
KOG0278|consensus	334		99.44
KOG0294|consensus	362		99.43
KOG0289|consensus	506		99.43
PLN00181	793	protein SPA1-RELATED; Provisional	99.42
KOG0275|consensus	508		99.42
KOG0642|consensus	577		99.42
KOG0269|consensus	839		99.42
KOG0310|consensus	487		99.42
KOG0308|consensus	735		99.41
KOG0313|consensus	423		99.41
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.41
KOG4283|consensus	397		99.41
KOG0313|consensus	423		99.4
KOG0301|consensus	745		99.4
KOG0293|consensus	519		99.39
KOG0268|consensus	433		99.39
PLN00181	793	protein SPA1-RELATED; Provisional	99.38
KOG0302|consensus	440		99.38
KOG0274|consensus	537		99.37
KOG0283|consensus	712		99.37
KOG2394|consensus	636		99.36
KOG1332|consensus	299		99.35
KOG1539|consensus	910		99.34
KOG0973|consensus	942		99.34
KOG0294|consensus	362		99.34
KOG0267|consensus	825		99.34
KOG0293|consensus	519		99.33
KOG0306|consensus	888		99.33
KOG0305|consensus	484		99.33
KOG0640|consensus	430		99.32
KOG1446|consensus	311		99.32
KOG0275|consensus	508		99.32
KOG0305|consensus	484		99.31
KOG1310|consensus	758		99.31
KOG0303|consensus	472		99.3
KOG0274|consensus	537		99.3
KOG0296|consensus	399		99.3
KOG1539|consensus	910		99.3
KOG0306|consensus	888		99.28
KOG0318|consensus	603		99.28
KOG0300|consensus	481		99.27
KOG0639|consensus	705		99.27
KOG0646|consensus	476		99.27
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.24
KOG1274|consensus	933		99.24
KOG0772|consensus	641		99.22
KOG2111|consensus	346		99.22
KOG1446|consensus	311		99.22
KOG0267|consensus	825		99.22
KOG0299|consensus	479		99.22
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.22
KOG0640|consensus	430		99.21
KOG0270|consensus	463		99.21
KOG4283|consensus	397		99.21
KOG0308|consensus	735		99.2
KOG2110|consensus	391		99.2
KOG0646|consensus	476		99.19
KOG2096|consensus	420		99.19
KOG1009|consensus	434		99.19
KOG1063|consensus	764		99.18
KOG0269|consensus	839		99.18
KOG1007|consensus	370		99.17
KOG0647|consensus	347		99.17
KOG0322|consensus	323		99.17
KOG0310|consensus	487		99.15
KOG0650|consensus	733		99.15
KOG0772|consensus	641		99.14
KOG2445|consensus	361		99.13
KOG0300|consensus	481		99.13
KOG0643|consensus	327		99.12
KOG2445|consensus	361		99.11
KOG0641|consensus	350		99.09
KOG0288|consensus	459		99.09
KOG0301|consensus	745		99.07
KOG0268|consensus	433		99.04
KOG0974|consensus	967		99.04
KOG1332|consensus	299		99.01
KOG0289|consensus	506		99.01
KOG1407|consensus	313		99.01
KOG0641|consensus	350		99.0
KOG0639|consensus	705		98.99
KOG0288|consensus	459		98.99
KOG1408|consensus	1080		98.98
KOG0644|consensus	1113		98.98
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.98
KOG0321|consensus	720		98.97
KOG1063|consensus	764		98.97
KOG2919|consensus	406		98.97
KOG2048|consensus	691		98.96
KOG0299|consensus	479		98.95
KOG1274|consensus	933		98.93
KOG1524|consensus	737		98.93
KOG1036|consensus	323		98.93
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.92
KOG1445|consensus	1012		98.92
KOG0771|consensus	398		98.91
KOG0290|consensus	364		98.89
KOG1538|consensus	1081		98.88
KOG4328|consensus	498		98.88
KOG0307|consensus	1049		98.85
KOG0649|consensus	325		98.85
KOG0642|consensus	577		98.83
KOG2139|consensus	445		98.82
COG2319	466	FOG: WD40 repeat [General function prediction only	98.82
KOG1272|consensus	545		98.81
KOG0270|consensus	463		98.81
KOG1538|consensus	1081		98.78
KOG0644|consensus	1113		98.75
KOG2106|consensus	626		98.74
KOG3881|consensus	412		98.74
KOG1036|consensus	323		98.73
KOG0307|consensus	1049		98.73
KOG1034|consensus	385		98.7
KOG0650|consensus	733		98.7
KOG0321|consensus	720		98.69
KOG2394|consensus	636		98.69
KOG1408|consensus	1080		98.68
KOG1409|consensus	404		98.68
KOG1188|consensus	376		98.68
KOG1273|consensus	405		98.67
KOG2110|consensus	391		98.67
KOG0280|consensus	339		98.67
KOG0290|consensus	364		98.66
KOG4328|consensus	498		98.65
KOG1009|consensus	434		98.65
KOG2096|consensus	420		98.63
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.61
KOG2055|consensus	514		98.61
KOG2048|consensus	691		98.6
KOG2919|consensus	406		98.59
KOG1523|consensus	361		98.59
KOG1310|consensus	758		98.59
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.58
COG2319	466	FOG: WD40 repeat [General function prediction only	98.58
KOG4714|consensus	319		98.57
KOG4227|consensus	609		98.54
KOG1524|consensus	737		98.52
KOG3914|consensus	390		98.52
KOG1240|consensus	1431		98.51
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.51
KOG1272|consensus	545		98.51
KOG0649|consensus	325		98.5
KOG1007|consensus	370		98.44
KOG1523|consensus	361		98.44
PRK01742	429	tolB translocation protein TolB; Provisional	98.44
KOG4378|consensus	673		98.41
KOG4227|consensus	609		98.39
KOG2111|consensus	346		98.38
KOG1188|consensus	376		98.37
KOG4378|consensus	673		98.36
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.32
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.32
PRK05137	435	tolB translocation protein TolB; Provisional	98.31
KOG1587|consensus	555		98.31
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.31
PRK02889	427	tolB translocation protein TolB; Provisional	98.3
KOG2321|consensus	703		98.26
KOG1587|consensus	555		98.23
KOG2106|consensus	626		98.22
KOG1963|consensus	792		98.19
KOG1963|consensus	792		98.17
KOG4190|consensus	1034		98.16
KOG1334|consensus	559		98.15
KOG0322|consensus	323		98.14
KOG0771|consensus	398		98.13
KOG1517|consensus	1387		98.12
KOG2055|consensus	514		98.08
KOG4547|consensus	541		98.07
PRK04922	433	tolB translocation protein TolB; Provisional	98.03
KOG0974|consensus	967		97.96
KOG1645|consensus	463		97.96
PRK00178	430	tolB translocation protein TolB; Provisional	97.9
PRK03629	429	tolB translocation protein TolB; Provisional	97.88
KOG4497|consensus	447		97.81
KOG2041|consensus	1189		97.81
KOG4640|consensus	665		97.8
KOG2139|consensus	445		97.8
PRK01742	429	tolB translocation protein TolB; Provisional	97.77
KOG4547|consensus	541		97.76
KOG1064|consensus	2439		97.76
KOG1832|consensus	1516		97.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.68
KOG2315|consensus	566		97.66
COG4946	668	Uncharacterized protein related to the periplasmic	97.64
KOG1334|consensus	559		97.64
PRK04792	448	tolB translocation protein TolB; Provisional	97.63
KOG1517|consensus	1387		97.61
PRK02889	427	tolB translocation protein TolB; Provisional	97.54
KOG2695|consensus	425		97.51
PRK11028	330	6-phosphogluconolactonase; Provisional	97.47
PRK11028	330	6-phosphogluconolactonase; Provisional	97.46
KOG0309|consensus	1081		97.39
KOG1064|consensus	2439		97.36
KOG2321|consensus	703		97.34
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.27
KOG1409|consensus	404		97.25
KOG2695|consensus	425		97.25
KOG4532|consensus	344		97.22
PRK03629	429	tolB translocation protein TolB; Provisional	97.22
PRK05137	435	tolB translocation protein TolB; Provisional	97.18
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.16
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.15
PRK04922	433	tolB translocation protein TolB; Provisional	97.14
KOG2079|consensus	1206		97.12
KOG3881|consensus	412		97.08
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.06
KOG0309|consensus	1081		97.04
KOG3914|consensus	390		97.04
PRK01029	428	tolB translocation protein TolB; Provisional	97.03
KOG2315|consensus	566		97.01
KOG0280|consensus	339		97.01
KOG2066|consensus	846		97.0
KOG1354|consensus	433		96.92
KOG4714|consensus	319		96.92
KOG2041|consensus	1189		96.84
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.82
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.8
PRK01029	428	tolB translocation protein TolB; Provisional	96.66
PRK04043	419	tolB translocation protein TolB; Provisional	96.59
KOG1240|consensus	1431		96.57
KOG1354|consensus	433		96.57
PRK00178	430	tolB translocation protein TolB; Provisional	96.4
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.39
PRK04792	448	tolB translocation protein TolB; Provisional	96.37
KOG1912|consensus	1062		96.35
KOG3617|consensus	1416		96.32
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.28
KOG0882|consensus	558		96.19
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.19
KOG4532|consensus	344		96.19
KOG1275|consensus	1118		96.19
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.14
KOG2314|consensus	698		96.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.07
KOG3621|consensus	726		95.96
KOG4640|consensus	665		95.89
COG4946	668	Uncharacterized protein related to the periplasmic	95.41
KOG1275|consensus	1118		95.4
KOG4649|consensus	354		95.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.31
KOG2395|consensus	644		95.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.91
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.85
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.71
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	94.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.17
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.02
PRK04043	419	tolB translocation protein TolB; Provisional	94.0
KOG4190|consensus	1034		93.98
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.21
KOG2444|consensus	238		93.21
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	93.16
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	93.05
KOG2079|consensus	1206		92.87
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	92.85
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.66
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	92.58
KOG2314|consensus	698		92.44
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	92.15
COG5167	776	VID27 Protein involved in vacuole import and degra	92.0
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	91.93
KOG1912|consensus	1062		91.87
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.78
KOG4497|consensus	447		91.77
KOG0882|consensus	558		91.68
KOG1920|consensus	1265		91.45
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.14
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	91.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	90.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.53
KOG1916|consensus	1283		90.49
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	90.23
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.62
PRK02888	635	nitrous-oxide reductase; Validated	89.57
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.99
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	88.14
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	88.08
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.07
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.05
KOG3621|consensus	726		87.09
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.86
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	86.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.57
KOG1645|consensus	463		85.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	84.74
KOG2114|consensus	933		84.66
PRK02888	635	nitrous-oxide reductase; Validated	83.76
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	82.85
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	82.35
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	82.31
PRK13616	591	lipoprotein LpqB; Provisional	81.32
KOG4649|consensus	354		81.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	81.09
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	80.78
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	80.06

>KOG0271|consensus

Probab=99.80  E-value=3.6e-19  Score=100.88  Aligned_cols=78  Identities=29%  Similarity=0.329  Sum_probs=74.4

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      -..+.||.++|.+++|+   |+|..+++|+-|.++++||+.+....+.+++|+..|.+++|+||+..+++++.|++|++|
T Consensus       108 ssS~~GH~e~Vl~~~fs---p~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFS---PTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ccccCCCCCcEEEEEec---CCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            44678899999999999   799999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       185 d  185 (480)
T KOG0271|consen  185 D  185 (480)
T ss_pred             c
Confidence            7

>KOG0263|consensus

Probab=99.80  E-value=6.2e-19  Score=105.81  Aligned_cols=83  Identities=29%  Similarity=0.463  Sum_probs=79.8

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      .++..++.+.||+++|.+++|+   ++|.++++++.|+.|.+||+.++..+..+.+|.+.|.++.|+.+|..+++++.|+
T Consensus       565 ~~G~~VRiF~GH~~~V~al~~S---p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  565 STGNSVRIFTGHKGPVTALAFS---PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN  641 (707)
T ss_pred             CCCcEEEEecCCCCceEEEEEc---CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence            4678899999999999999999   7999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++++||
T Consensus       642 sV~lWD  647 (707)
T KOG0263|consen  642 SVRLWD  647 (707)
T ss_pred             eEEEEE
Confidence            999997

>KOG0271|consensus

Probab=99.77  E-value=2e-18  Score=97.92  Aligned_cols=83  Identities=27%  Similarity=0.352  Sum_probs=75.1

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE-EEecCCCCeEEEEEECC-----CCCeEE
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI-GTFEGHKGCVWGVDINK-----DASKAA   76 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~-----~~~~~~   76 (88)
                      .+..+.+++++|...|.|++|+   |+|.++++++.++.|++|+..++..+ ..+.+|...|.+++|.|     ..++++
T Consensus       145 ~TeTp~~t~KgH~~WVlcvaws---PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~la  221 (480)
T KOG0271|consen  145 DTETPLFTCKGHKNWVLCVAWS---PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLA  221 (480)
T ss_pred             CCCCcceeecCCccEEEEEEEC---CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcccee
Confidence            4667899999999999999999   89999999999999999998887754 67899999999999987     356899


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      ++++|+.+++||
T Consensus       222 s~skDg~vrIWd  233 (480)
T KOG0271|consen  222 SSSKDGSVRIWD  233 (480)
T ss_pred             cccCCCCEEEEE
Confidence            999999999997

>KOG0266|consensus

Probab=99.76  E-value=2.9e-17  Score=96.93  Aligned_cols=82  Identities=24%  Similarity=0.343  Sum_probs=78.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ++..++++++|...|.+++|+   +.++.+++++.|+.+++|++.++.....+.+|...|..++|++++.++++++.|+.
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~---p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~  311 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFS---PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT  311 (456)
T ss_pred             CCeEEEEecCCCCceEEEEec---CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence            457889999999999999999   78899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       312 i~vwd  316 (456)
T KOG0266|consen  312 IRVWD  316 (456)
T ss_pred             EEEEE
Confidence            99997

>KOG0263|consensus

Probab=99.76  E-value=3.8e-18  Score=102.50  Aligned_cols=81  Identities=23%  Similarity=0.270  Sum_probs=78.1

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      .++++.+.+|.+.|.|+.|+   |+..++++|+.|.++++||+.++..++.|.||.+.|.+++|+|+|+++++++.|+.|
T Consensus       525 ~~PlRifaghlsDV~cv~FH---PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVDCVSFH---PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             CCchhhhcccccccceEEEC---CcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence            46888999999999999999   799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      .+||
T Consensus       602 ~iWD  605 (707)
T KOG0263|consen  602 KIWD  605 (707)
T ss_pred             EEEE
Confidence            9997

>KOG0286|consensus

Probab=99.74  E-value=4.1e-17  Score=89.98  Aligned_cols=84  Identities=25%  Similarity=0.328  Sum_probs=79.7

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ..++.+..+.+|++.|.+++++|  .+++.+++++.|+.-++||++.+...+.|.+|..-|..++|.|+|.-+++++.|+
T Consensus       174 e~g~~~~~f~GH~gDV~slsl~p--~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  174 ETGQQTQVFHGHTGDVMSLSLSP--SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             ccceEEEEecCCcccEEEEecCC--CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc
Confidence            46788999999999999999995  5999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++|+||
T Consensus       252 tcRlyD  257 (343)
T KOG0286|consen  252 TCRLYD  257 (343)
T ss_pred             eeEEEe
Confidence            999987

>KOG0272|consensus

Probab=99.74  E-value=7.7e-18  Score=96.13  Aligned_cols=81  Identities=22%  Similarity=0.281  Sum_probs=75.8

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      +..+...+||...|.+++|.   ++|..+++|+.|..-++||+++++.+..+.+|.+.|..++|+|+|.++++++.|+++
T Consensus       293 k~ElL~QEGHs~~v~~iaf~---~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~  369 (459)
T KOG0272|consen  293 KSELLLQEGHSKGVFSIAFQ---PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTC  369 (459)
T ss_pred             chhhHhhcccccccceeEec---CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcE
Confidence            34445568899999999999   799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      +|||
T Consensus       370 kVWD  373 (459)
T KOG0272|consen  370 KVWD  373 (459)
T ss_pred             EEee
Confidence            9997

>KOG0279|consensus

Probab=99.73  E-value=7.1e-17  Score=88.46  Aligned_cols=82  Identities=28%  Similarity=0.314  Sum_probs=78.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      -|.+++.++||.-.|..+..+   ++|++.++++.|+.+++||+..+...+.+.+|..-+.+++++++.+++++++.|.+
T Consensus        52 ~G~~~r~~~GHsH~v~dv~~s---~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT  128 (315)
T KOG0279|consen   52 YGVPVRRLTGHSHFVSDVVLS---SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT  128 (315)
T ss_pred             cCceeeeeeccceEecceEEc---cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcce
Confidence            467899999999999999999   89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++||
T Consensus       129 iklwn  133 (315)
T KOG0279|consen  129 IKLWN  133 (315)
T ss_pred             eeeee
Confidence            99996

>PTZ00421 coronin; Provisional

Probab=99.71  E-value=4.3e-16  Score=92.64  Aligned_cols=81  Identities=19%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .++..+.+|...|.+++|+|  ...+.+++++.|+.+++||+.++..+..+.+|...|.+++|++++.++++++.|+.++
T Consensus       116 ~~l~~L~gH~~~V~~l~f~P--~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~Ir  193 (493)
T PTZ00421        116 DPIVHLQGHTKKVGIVSFHP--SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN  193 (493)
T ss_pred             cceEEecCCCCcEEEEEeCc--CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEE
Confidence            45778899999999999994  3457999999999999999998888888999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       194 IwD  196 (493)
T PTZ00421        194 IID  196 (493)
T ss_pred             EEE
Confidence            997

>KOG0295|consensus

Probab=99.70  E-value=2.7e-16  Score=88.71  Aligned_cols=84  Identities=25%  Similarity=0.263  Sum_probs=74.0

Q ss_pred             cceeEEecCCCCCEEEEEEEec------------CCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDI------------TESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA   72 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   72 (88)
                      +.....+++|..+|.+++|.|-            ...++.+++++.|+.|++|++.++.++..+.+|.+.|..++|+|.|
T Consensus       267 ~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G  346 (406)
T KOG0295|consen  267 KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG  346 (406)
T ss_pred             chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence            3445567889999999999753            1123689999999999999999999999999999999999999999


Q ss_pred             CeEEEecCCCeEEEcC
Q psy6444          73 SKAASGAADFQAKALK   88 (88)
Q Consensus        73 ~~~~~~~~d~~i~~~~   88 (88)
                      ++++++..|+++++||
T Consensus       347 kyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  347 KYILSCADDKTLRVWD  362 (406)
T ss_pred             eEEEEEecCCcEEEEE
Confidence            9999999999999997

>KOG0318|consensus

Probab=99.69  E-value=1e-15  Score=89.74  Aligned_cols=79  Identities=25%  Similarity=0.406  Sum_probs=73.1

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec---CCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE---GHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      -..+++.|...|.+++|+   |+|+.+++++.|+.+.+||-.+++.+..+.   +|++.|.+++|+||+.++++++.|.+
T Consensus       182 Fk~s~r~HskFV~~VRys---PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt  258 (603)
T KOG0318|consen  182 FKSSFREHSKFVNCVRYS---PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT  258 (603)
T ss_pred             eeecccccccceeeEEEC---CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence            345667788999999999   799999999999999999999999888887   89999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       259 ~KIWd  263 (603)
T KOG0318|consen  259 IKIWD  263 (603)
T ss_pred             EEEEE
Confidence            99997

>KOG0272|consensus

Probab=99.67  E-value=5.3e-16  Score=88.79  Aligned_cols=82  Identities=18%  Similarity=0.212  Sum_probs=76.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~   82 (88)
                      ++..+..|.+|..+|..+.|+   |+|..+++++.|+.+++||++....+..+.+|.+.|..++|+| .|.++++++.|+
T Consensus       334 tgr~im~L~gH~k~I~~V~fs---PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~  410 (459)
T KOG0272|consen  334 TGRCIMFLAGHIKEILSVAFS---PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN  410 (459)
T ss_pred             cCcEEEEecccccceeeEeEC---CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCc
Confidence            567888999999999999999   7999999999999999999998888999999999999999998 688889999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++++|.
T Consensus       411 t~kiWs  416 (459)
T KOG0272|consen  411 TVKIWS  416 (459)
T ss_pred             ceeeec
Confidence            999994

>KOG0266|consensus

Probab=99.66  E-value=1.6e-15  Score=89.66  Aligned_cols=79  Identities=30%  Similarity=0.402  Sum_probs=72.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEEC-CCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQG-DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ..+.+.+|...|..++|+   +++..+++++.|+.+++|++ ..+..+..+.+|...|.+++|+|+++.+++++.|++|+
T Consensus       195 ~~~~l~~h~~~v~~~~fs---~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvr  271 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFS---PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVR  271 (456)
T ss_pred             hhccccccccceeeeEEC---CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEE
Confidence            455668899999999999   79999999999999999999 55578899999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       272 iWd  274 (456)
T KOG0266|consen  272 IWD  274 (456)
T ss_pred             EEe
Confidence            997

>KOG0316|consensus

Probab=99.65  E-value=2e-15  Score=81.60  Aligned_cols=83  Identities=27%  Similarity=0.243  Sum_probs=78.3

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ..+..++++.+|...|..++.+   .+...+++++-|+.+.+||+.+++.++.+.+|.+.|+.++|+.+...+++++.|.
T Consensus        47 ~rg~liktYsghG~EVlD~~~s---~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~  123 (307)
T KOG0316|consen   47 LRGALIKTYSGHGHEVLDAALS---SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDS  123 (307)
T ss_pred             cccceeeeecCCCceeeecccc---ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccc
Confidence            3567889999999999999988   7888999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++++||
T Consensus       124 s~r~wD  129 (307)
T KOG0316|consen  124 SVRLWD  129 (307)
T ss_pred             eeEEEE
Confidence            999997

>KOG0643|consensus

Probab=99.63  E-value=5.3e-15  Score=81.07  Aligned_cols=76  Identities=34%  Similarity=0.665  Sum_probs=73.0

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .++||..++..+.|+   .+|++|+++.+|....+|-..+++++..+.+|.+.|++++.+-+...+++++.|.++++||
T Consensus         5 ~l~GHERplTqiKyN---~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYN---REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEec---CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            478999999999999   8999999999999999999889999999999999999999999999999999999999997

>KOG0319|consensus

Probab=99.63  E-value=5.7e-15  Score=89.12  Aligned_cols=82  Identities=26%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +...+-+|.||+..|.++.|+   +..+.+++++.|+++++|.+.+..++..+.||...|....|-.++.++++++.||.
T Consensus       494 ~~~l~~vLsGH~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl  570 (775)
T KOG0319|consen  494 QLRLLGVLSGHTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL  570 (775)
T ss_pred             CceEEEEeeCCccceEEEEec---cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc
Confidence            445778999999999999999   78899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       571 iKlWn  575 (775)
T KOG0319|consen  571 IKLWN  575 (775)
T ss_pred             EEEEe
Confidence            99996

>PTZ00421 coronin; Provisional

Probab=99.62  E-value=2e-14  Score=85.64  Aligned_cols=77  Identities=26%  Similarity=0.243  Sum_probs=67.6

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-------CEEEEecCCCCeEEEEEECCCC-CeEEEecCC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDA-SKAASGAAD   81 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d   81 (88)
                      .+.+|++.|.+++|+|  .+++.+++++.|+.|++|++..+       ..+..+.+|...|..++|+|++ .++++++.|
T Consensus        70 ~l~GH~~~V~~v~fsP--~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNP--FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             eEeCCCCCEEEEEEcC--CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            4678999999999994  48899999999999999998754       2456788999999999999975 688899999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +++++||
T Consensus       148 gtVrIWD  154 (493)
T PTZ00421        148 MVVNVWD  154 (493)
T ss_pred             CEEEEEE
Confidence            9999997

>KOG0303|consensus

Probab=99.62  E-value=4.8e-15  Score=84.67  Aligned_cols=82  Identities=21%  Similarity=0.308  Sum_probs=76.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ...++..|.+|+..|.-+.|+|  ...+.|++++.|..+.+|++.++..+-.+. |...|.++.|+.+|.++.+.+.|..
T Consensus       120 ltepvv~L~gH~rrVg~V~wHP--tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk  196 (472)
T KOG0303|consen  120 LTEPVVELYGHQRRVGLVQWHP--TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK  196 (472)
T ss_pred             cccceEEEeecceeEEEEeecc--cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce
Confidence            3467899999999999999998  777999999999999999999999777777 9999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +|+||
T Consensus       197 vRv~d  201 (472)
T KOG0303|consen  197 VRVID  201 (472)
T ss_pred             eEEEc
Confidence            99997

>KOG0291|consensus

Probab=99.61  E-value=1.2e-14  Score=88.27  Aligned_cols=79  Identities=24%  Similarity=0.325  Sum_probs=75.0

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      .+...++|-..+.+++++   ++|+.+++|..|+.|++|+..++.+...+..|...+..+.|+..++.+++++-||++|.
T Consensus       342 YVlKQQgH~~~i~~l~YS---pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYS---PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             eeeeccccccceeeEEEC---CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence            455678899999999999   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       419 wD  420 (893)
T KOG0291|consen  419 WD  420 (893)
T ss_pred             ee
Confidence            97

>PTZ00420 coronin; Provisional

Probab=99.61  E-value=4.8e-14  Score=84.98  Aligned_cols=81  Identities=20%  Similarity=0.120  Sum_probs=68.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--------EEEEecCCCCeEEEEEECCCCCeE-E
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--------WIGTFEGHKGCVWGVDINKDASKA-A   76 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~-~   76 (88)
                      .++..+.+|.+.|.+++|+|  .++..+++++.|+.+++|++..+.        .+..+.+|...|..++|+|++..+ +
T Consensus        65 ~~v~~L~gH~~~V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa  142 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMC  142 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEE
Confidence            45677899999999999995  457899999999999999987532        234577899999999999988765 6


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      +++.|+++++||
T Consensus       143 SgS~DgtIrIWD  154 (568)
T PTZ00420        143 SSGFDSFVNIWD  154 (568)
T ss_pred             EEeCCCeEEEEE
Confidence            889999999997

>KOG0284|consensus

Probab=99.60  E-value=3.3e-15  Score=85.43  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=74.5

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +..+.+.+|.-.|.+++|+   +....++++++|..|++||.+++.++..+.+|+..|..+.|++++.+++++++|..++
T Consensus       213 kee~vL~GHgwdVksvdWH---P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k  289 (464)
T KOG0284|consen  213 KEERVLRGHGWDVKSVDWH---PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK  289 (464)
T ss_pred             chhheeccCCCCcceeccC---CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence            4455678998889999999   6888999999999999999999999999999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      ++|
T Consensus       290 v~D  292 (464)
T KOG0284|consen  290 VFD  292 (464)
T ss_pred             EEe
Confidence            987

>KOG0283|consensus

Probab=99.60  E-value=3.8e-15  Score=90.27  Aligned_cols=79  Identities=24%  Similarity=0.300  Sum_probs=72.6

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~   83 (88)
                      .+|+..+.||++.|.++.|+    ..++|++++-|+++++|.+....++..|. |..-|++++|+| |.+++++|+-|+.
T Consensus       359 ekP~~ef~GHt~DILDlSWS----Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K  433 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWS----KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK  433 (712)
T ss_pred             ccchhhhhccchhheecccc----cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc
Confidence            46788899999999999998    57799999999999999998888888887 999999999999 6789999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +|+|+
T Consensus       434 vRiWs  438 (712)
T KOG0283|consen  434 VRLWS  438 (712)
T ss_pred             eEEee
Confidence            99995

>KOG1445|consensus

Probab=99.60  E-value=1.7e-15  Score=91.04  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=75.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .+...++.|...|..++|+|  ...+.+++++.|-.|++||+.+......+.+|.+.|..++|+|+|+++++.|+|++++
T Consensus       668 tPe~~lt~h~eKI~slRfHP--LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  668 TPEKILTIHGEKITSLRFHP--LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             CcceeeecccceEEEEEecc--hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence            45667889999999999998  7889999999999999999999888889999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|+
T Consensus       746 Vy~  748 (1012)
T KOG1445|consen  746 VYE  748 (1012)
T ss_pred             EeC
Confidence            984

>KOG0277|consensus

Probab=99.59  E-value=9.5e-15  Score=79.63  Aligned_cols=83  Identities=17%  Similarity=0.266  Sum_probs=75.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~   82 (88)
                      +.+|+..++.|...|.++.|++  ..++.+++++.|++|++|+......+..+.+|...|....|+|. +.++++++.|+
T Consensus        93 ~s~Pi~~~kEH~~EV~Svdwn~--~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~  170 (311)
T KOG0277|consen   93 PSKPIHKFKEHKREVYSVDWNT--VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG  170 (311)
T ss_pred             CCcchhHHHhhhhheEEecccc--ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence            4468889999999999999996  67788888899999999999888889999999999999999995 67889999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++||
T Consensus       171 ~l~lwd  176 (311)
T KOG0277|consen  171 TLRLWD  176 (311)
T ss_pred             eEEEEE
Confidence            999997

>KOG1034|consensus

Probab=99.59  E-value=1.1e-14  Score=81.66  Aligned_cols=83  Identities=27%  Similarity=0.341  Sum_probs=73.8

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe---cCCCCeEEEEEECCCCCeEEEecC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF---EGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      .++....+.+|...|..+.+.|  ...++++++++|..+++|++++..++..+   .+|...|.+++|+.++.++++++.
T Consensus       124 ~~~~~~~~~ghG~sINeik~~p--~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm  201 (385)
T KOG1034|consen  124 SGQCSKNYRGHGGSINEIKFHP--DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM  201 (385)
T ss_pred             hhhhccceeccCccchhhhcCC--CCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC
Confidence            3455677889999999999997  77799999999999999999988876554   679999999999999999999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |.++.+|+
T Consensus       202 Dhslk~W~  209 (385)
T KOG1034|consen  202 DHSLKLWR  209 (385)
T ss_pred             cceEEEEe
Confidence            99999995

>KOG0282|consensus

Probab=99.59  E-value=8.5e-16  Score=89.04  Aligned_cols=83  Identities=24%  Similarity=0.272  Sum_probs=77.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-CCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-GDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      +.+.+.++.+|+..|.++.|.|  ..+.++++++.|+.|++|++.. +.+++.+.+|...|..++|+.++..+++++.|+
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp--~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFP--KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             cHhheeeccCCccccchhhhcc--ceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            4567889999999999999996  5889999999999999999876 778999999999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++||
T Consensus       281 ~lKlwD  286 (503)
T KOG0282|consen  281 FLKLWD  286 (503)
T ss_pred             eeeeec
Confidence            999998

>KOG0264|consensus

Probab=99.59  E-value=2.1e-14  Score=82.54  Aligned_cols=82  Identities=21%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-CEEEEecCCCCeEEEEEECCCCC-eEEEecCCC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDAS-KAASGAADF   82 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~   82 (88)
                      .++.....+|.+.+.|++|+|  .++..|++++.|+++.+||+++- ..+..+.+|...|..+.|+|+.. .+++++.|+
T Consensus       262 ~~~~~~~~ah~~~vn~~~fnp--~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~  339 (422)
T KOG0264|consen  262 SKPSHSVKAHSAEVNCVAFNP--FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR  339 (422)
T ss_pred             CCCcccccccCCceeEEEeCC--CCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence            445666788999999999998  88899999999999999999864 47789999999999999999766 556888999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++.+||
T Consensus       340 rl~vWD  345 (422)
T KOG0264|consen  340 RLNVWD  345 (422)
T ss_pred             cEEEEe
Confidence            999997

>KOG0279|consensus

Probab=99.58  E-value=5.9e-14  Score=77.24  Aligned_cols=82  Identities=21%  Similarity=0.182  Sum_probs=70.2

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC--CCeEEEEEECCC--CCeEEEe
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH--KGCVWGVDINKD--ASKAASG   78 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~--~~~~~~~   78 (88)
                      ..+++.+.|.+|+.-|.+++|+   ++...+++++.|.++++|+.. +.+...+...  .+.|.+++|+|.  ...++++
T Consensus        93 ~~g~~t~~f~GH~~dVlsva~s---~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~  168 (315)
T KOG0279|consen   93 ATGESTRRFVGHTKDVLSVAFS---TDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA  168 (315)
T ss_pred             cCCcEEEEEEecCCceEEEEec---CCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence            3567889999999999999999   799999999999999999986 4444444332  789999999998  5688899


Q ss_pred             cCCCeEEEcC
Q psy6444          79 AADFQAKALK   88 (88)
Q Consensus        79 ~~d~~i~~~~   88 (88)
                      +.|+++++||
T Consensus       169 s~DktvKvWn  178 (315)
T KOG0279|consen  169 SWDKTVKVWN  178 (315)
T ss_pred             cCCceEEEEc
Confidence            9999999997

>KOG0315|consensus

Probab=99.58  E-value=6.6e-14  Score=76.27  Aligned_cols=81  Identities=15%  Similarity=0.211  Sum_probs=73.5

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-CEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      -.|+..++.|.+.+..+.++   |++.++++++.|+.+++|+...- +....+.+|.+.++..+|+.++.++++++.|+.
T Consensus       205 l~P~~k~~ah~~~il~C~lS---Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  205 LEPVHKFQAHNGHILRCLLS---PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT  281 (311)
T ss_pred             ceEhhheecccceEEEEEEC---CCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence            35677889999999999999   79999999999999999998765 456778899999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      .++|+
T Consensus       282 ~rlW~  286 (311)
T KOG0315|consen  282 ARLWD  286 (311)
T ss_pred             eeecc
Confidence            99996

>KOG0285|consensus

Probab=99.57  E-value=3.4e-14  Score=80.62  Aligned_cols=81  Identities=23%  Similarity=0.211  Sum_probs=75.9

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      -+..+.+++|.+.|.++++.   |..+++++++.|+.+.+||+.++...-.+.+|...+..+++++...++.+++.|+.+
T Consensus       141 wKl~rVi~gHlgWVr~vavd---P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVD---PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV  217 (460)
T ss_pred             ceehhhhhhccceEEEEeeC---CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence            35677889999999999999   678899999999999999999999989999999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      +.||
T Consensus       218 KCwD  221 (460)
T KOG0285|consen  218 KCWD  221 (460)
T ss_pred             EEEe
Confidence            9997

>KOG0292|consensus

Probab=99.57  E-value=6.6e-15  Score=90.84  Aligned_cols=80  Identities=19%  Similarity=0.138  Sum_probs=75.3

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ..+..+.+|.++|..+.|+   +.+..++||+.|..|++|+..+.++++.+.+|-.-|+.+.|++...+++|++.|.+||
T Consensus        42 tli~rFdeHdGpVRgv~FH---~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIr  118 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFH---PTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIR  118 (1202)
T ss_pred             hHHhhhhccCCccceeeec---CCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEE
Confidence            4456678899999999999   7999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       119 IWN  121 (1202)
T KOG0292|consen  119 IWN  121 (1202)
T ss_pred             EEe
Confidence            997

>PTZ00420 coronin; Provisional

Probab=99.57  E-value=1.5e-13  Score=82.90  Aligned_cols=78  Identities=8%  Similarity=0.046  Sum_probs=67.0

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ++..+.+|...|.+++|+   +++. .+++++.|+.+++||+.++..+..+. +...|.+++|++++.++++++.|+.++
T Consensus       117 p~~~L~gH~~~V~sVaf~---P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~Ir  192 (568)
T PTZ00420        117 PQCILKGHKKKISIIDWN---PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMH  192 (568)
T ss_pred             ceEEeecCCCcEEEEEEC---CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEE
Confidence            455678999999999999   5665 56789999999999999887666665 557899999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       193 IwD  195 (568)
T PTZ00420        193 IID  195 (568)
T ss_pred             EEE
Confidence            997

>KOG0285|consensus

Probab=99.56  E-value=1.6e-14  Score=81.94  Aligned_cols=84  Identities=23%  Similarity=0.296  Sum_probs=79.2

Q ss_pred             CCccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           2 ASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      .+.++...++.||-+.|..++++   .-..++++++.|+.++.||+...+.++.+.+|-..|.+++.+|.-+.+++++.|
T Consensus       180 latg~LkltltGhi~~vr~vavS---~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD  256 (460)
T KOG0285|consen  180 LATGQLKLTLTGHIETVRGVAVS---KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD  256 (460)
T ss_pred             cccCeEEEeecchhheeeeeeec---ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCc
Confidence            35778889999999999999999   688999999999999999999899999999999999999999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      ..+|+||
T Consensus       257 st~RvWD  263 (460)
T KOG0285|consen  257 STIRVWD  263 (460)
T ss_pred             ceEEEee
Confidence            9999998

>KOG0265|consensus

Probab=99.56  E-value=5.7e-14  Score=77.92  Aligned_cols=80  Identities=19%  Similarity=0.214  Sum_probs=71.7

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      .+...+.+|++.|..+.|+   |+|..+++++.|..|.+|++. ..+....+++|.++|..+.|..+++.+++++.|.++
T Consensus        38 ap~m~l~gh~geI~~~~F~---P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFH---PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV  114 (338)
T ss_pred             chhhhcCCCcceEEEEEEC---CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence            4556688999999999999   799999999999999999965 334566788999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      +.||
T Consensus       115 ~~wD  118 (338)
T KOG0265|consen  115 RGWD  118 (338)
T ss_pred             EEEe
Confidence            9997

>KOG0315|consensus

Probab=99.56  E-value=6.1e-14  Score=76.43  Aligned_cols=81  Identities=17%  Similarity=0.220  Sum_probs=70.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +..|+.++.+|+..|..+.|.   .+|++++++++||.+++||++....-+.+ .+...|..+..+|+.--++++..++.
T Consensus        72 np~Pv~t~e~h~kNVtaVgF~---~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~  147 (311)
T KOG0315|consen   72 NPNPVATFEGHTKNVTAVGFQ---CDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGN  147 (311)
T ss_pred             CCCceeEEeccCCceEEEEEe---ecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCc
Confidence            445899999999999999999   89999999999999999999874433333 36689999999999888999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++||
T Consensus       148 irvWD  152 (311)
T KOG0315|consen  148 IRVWD  152 (311)
T ss_pred             EEEEE
Confidence            99997

>KOG0273|consensus

Probab=99.56  E-value=3.9e-14  Score=82.28  Aligned_cols=81  Identities=19%  Similarity=0.229  Sum_probs=74.3

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC---------eE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS---------KA   75 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~   75 (88)
                      ..|+.++.+|+++|.++.|+   +.+.+|++++.|+++++|..........+.+|...|..+.|+|.+.         .+
T Consensus       349 ~~P~~t~~GH~g~V~alk~n---~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l  425 (524)
T KOG0273|consen  349 DRPVKTFIGHHGEVNALKWN---PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML  425 (524)
T ss_pred             CCcceeeecccCceEEEEEC---CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence            45788999999999999999   7999999999999999999888888899999999999999999744         78


Q ss_pred             EEecCCCeEEEcC
Q psy6444          76 ASGAADFQAKALK   88 (88)
Q Consensus        76 ~~~~~d~~i~~~~   88 (88)
                      ++++.|+++++||
T Consensus       426 ~sas~dstV~lwd  438 (524)
T KOG0273|consen  426 ASASFDSTVKLWD  438 (524)
T ss_pred             EEeecCCeEEEEE
Confidence            8999999999997

>KOG0645|consensus

Probab=99.55  E-value=2.2e-13  Score=74.83  Aligned_cols=80  Identities=24%  Similarity=0.238  Sum_probs=72.7

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      +.+.+++||...|-+++|+   .+|++|++++.|+++.+|.+....   .+..++.|..-|..+.|+|...++++++.|.
T Consensus        96 ecv~~lEGHEnEVK~Vaws---~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn  172 (312)
T KOG0645|consen   96 ECVATLEGHENEVKCVAWS---ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN  172 (312)
T ss_pred             eEEeeeeccccceeEEEEc---CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence            5688999999999999999   899999999999999999987443   5577889999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      +|++|.
T Consensus       173 TIk~~~  178 (312)
T KOG0645|consen  173 TIKVYR  178 (312)
T ss_pred             eEEEEe
Confidence            999984

>KOG0316|consensus

Probab=99.55  E-value=8.5e-14  Score=75.45  Aligned_cols=82  Identities=20%  Similarity=0.189  Sum_probs=77.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +.+.+..+.+++++|..++|+   -+|++.+++++|..+++|+...+..+..+.+|...|...+.+.|+..+++++.|..
T Consensus         6 ptkr~~~l~~~qgaV~avryN---~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYN---VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             cchhceeecccccceEEEEEc---cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCce
Confidence            445677889999999999999   89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +.+||
T Consensus        83 v~vwD   87 (307)
T KOG0316|consen   83 VQVWD   87 (307)
T ss_pred             EEEEE
Confidence            99997

>KOG0265|consensus

Probab=99.54  E-value=7.5e-14  Score=77.47  Aligned_cols=78  Identities=23%  Similarity=0.269  Sum_probs=70.6

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCeEEE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQAKA   86 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~i~~   86 (88)
                      .-++++|.++|..+.|.   .++..+++++.|+.+..||+.+++.++.+++|.+.+..+..+..|..++ +++.|+++++
T Consensus        83 ~~~lkgHsgAVM~l~~~---~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl  159 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGM---RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKL  159 (338)
T ss_pred             eeeeccccceeEeeeec---cCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEE
Confidence            44677999999999999   8999999999999999999999999999999999999988666677666 7889999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       160 ~D  161 (338)
T KOG0265|consen  160 WD  161 (338)
T ss_pred             Ee
Confidence            97

>KOG0645|consensus

Probab=99.54  E-value=2.1e-13  Score=74.90  Aligned_cols=73  Identities=27%  Similarity=0.376  Sum_probs=66.5

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +|+..|+.++|+   |.|+++++++.|..+.+|.-..+  +++..+.+|.+.|.+++|+++|.++++++.|.++-+|.
T Consensus        59 ~hkrsVRsvAws---p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   59 GHKRSVRSVAWS---PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             cchheeeeeeec---CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence            488999999999   79999999999999999976544  36788999999999999999999999999999999883

>KOG0273|consensus

Probab=99.53  E-value=2e-13  Score=79.46  Aligned_cols=82  Identities=28%  Similarity=0.351  Sum_probs=70.8

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE------------------------------
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI------------------------------   53 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   53 (88)
                      ++..+.+|..|+++|..+.|+   ..|.++++++.|+.+.+||..++...                              
T Consensus       265 ~G~l~~tl~~HkgPI~slKWn---k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i  341 (524)
T KOG0273|consen  265 DGNLISTLGQHKGPIFSLKWN---KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCI  341 (524)
T ss_pred             CchhhhhhhccCCceEEEEEc---CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceE
Confidence            456777888999999999999   89999999999999999988543221                              


Q ss_pred             -----------EEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          54 -----------GTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        54 -----------~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                                 ..+.+|.+.|.++.|+|.+.++++++.|+++++|.
T Consensus       342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS  387 (524)
T ss_pred             EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence                       23358899999999999999999999999999995

>KOG0286|consensus

Probab=99.52  E-value=5.8e-13  Score=73.92  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=72.8

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ..++|++|.+.|.++.|+   ++.+.+++++.||.+.+||..+...++.+.-....|...+|+|.+..+++++-|+.+.+
T Consensus        47 ~rr~LkGH~~Ki~~~~ws---~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWS---TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eEEEecccccceeeeEec---CCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            458899999999999999   89999999999999999999888888888888889999999999999999999998887


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      |+
T Consensus       124 y~  125 (343)
T KOG0286|consen  124 YP  125 (343)
T ss_pred             Ee
Confidence            74

>KOG0276|consensus

Probab=99.52  E-value=3.3e-14  Score=85.17  Aligned_cols=83  Identities=22%  Similarity=0.194  Sum_probs=74.3

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ..+.++|++|...|.|+.|-+. .+...++++..|..+++||.++..+++.+.+|...|..+.|+|.-..+++++.||++
T Consensus       173 ~~~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  173 PHPNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             CCCceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccE
Confidence            3567899999999999999620 222599999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      |+|+
T Consensus       252 riWh  255 (794)
T KOG0276|consen  252 RIWN  255 (794)
T ss_pred             EEec
Confidence            9995

>KOG0284|consensus

Probab=99.52  E-value=1.7e-14  Score=82.61  Aligned_cols=79  Identities=22%  Similarity=0.161  Sum_probs=71.0

Q ss_pred             eeEEecCCC-CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           7 IPLTCSGHT-RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         7 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .++..++|. ..|.+++|+   ++-..+++++.|+.+++||....+....+.+|...+.+++|+|...+++++++|..++
T Consensus       171 nVk~~~ahh~eaIRdlafS---pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVK  247 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFS---PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVK  247 (464)
T ss_pred             hhHHhhHhhhhhhheeccC---CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeE
Confidence            344455655 889999999   6778999999999999999998888888999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       248 lWD  250 (464)
T KOG0284|consen  248 LWD  250 (464)
T ss_pred             eec
Confidence            998

>KOG0302|consensus

Probab=99.51  E-value=7.2e-14  Score=79.54  Aligned_cols=78  Identities=22%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      +.+.+|+..|..++|+|  .....+++++.|++|++||++.+.  .....+.|.+-|+.+.|+.+-.++++++.||++++
T Consensus       251 ~Pf~gH~~SVEDLqWSp--tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i  328 (440)
T KOG0302|consen  251 RPFTGHTKSVEDLQWSP--TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI  328 (440)
T ss_pred             ccccccccchhhhccCC--ccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE
Confidence            34678999999999997  777899999999999999998762  22233779999999999998888999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       329 wD  330 (440)
T KOG0302|consen  329 WD  330 (440)
T ss_pred             EE
Confidence            97

>KOG0292|consensus

Probab=99.51  E-value=1.7e-13  Score=84.81  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ....+.+|.||...|..+.|+   +.-.|++|++.|.+|++|+-+++.++..+.||.--|.+-+|+|...+++|++-|.+
T Consensus        82 ~rrclftL~GHlDYVRt~~FH---heyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFH---HEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             cceehhhhccccceeEEeecc---CCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence            346788999999999999999   78899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +|+||
T Consensus       159 VRVWD  163 (1202)
T KOG0292|consen  159 VRVWD  163 (1202)
T ss_pred             EEEEe
Confidence            99998

>KOG0276|consensus

Probab=99.50  E-value=2.8e-13  Score=81.31  Aligned_cols=81  Identities=26%  Similarity=0.207  Sum_probs=74.6

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCC--CeEEEecCCCe
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA--SKAASGAADFQ   83 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~d~~   83 (88)
                      .+.++++||+-.|.+++|+|  .+.+.+++++-|+++++|.+....+.+++.+|.+.|+++++-+.+  .++++++.|.+
T Consensus       131 a~~qtfeGH~HyVMqv~fnP--kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  131 ACEQTFEGHEHYVMQVAFNP--KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             eeeeEEcCcceEEEEEEecC--CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence            46788999999999999998  788999999999999999998888889999999999999998854  48999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       209 iKvWD  213 (794)
T KOG0276|consen  209 IKVWD  213 (794)
T ss_pred             EEEee
Confidence            99998

>KOG1407|consensus

Probab=99.50  E-value=9.9e-14  Score=75.93  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=72.8

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      -+++.+++.|.....|+.|+   |+|++++.|+.|-.+.+||++.-.+++.+..+...|+.+.|+++|++++++++|..|
T Consensus       179 Lkpv~si~AH~snCicI~f~---p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I  255 (313)
T KOG1407|consen  179 LKPVQSIKAHPSNCICIEFD---PDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI  255 (313)
T ss_pred             cccccccccCCcceEEEEEC---CCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence            36788999999999999999   799999999999999999998777889999999999999999999999999999887


Q ss_pred             EE
Q psy6444          85 KA   86 (88)
Q Consensus        85 ~~   86 (88)
                      -+
T Consensus       256 DI  257 (313)
T KOG1407|consen  256 DI  257 (313)
T ss_pred             Ee
Confidence            54

>KOG0277|consensus

Probab=99.50  E-value=7.6e-13  Score=72.37  Aligned_cols=84  Identities=21%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAAD   81 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d   81 (88)
                      ..++.+.++++|...|....|+|  ..++.+++++.|+.+++||++.......+..|...+.+..|+. +...+++++.|
T Consensus       135 ~r~~Sv~Tf~gh~~~Iy~a~~sp--~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  135 NRPNSVQTFNGHNSCIYQAAFSP--HIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             CCCcceEeecCCccEEEEEecCC--CCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCC
Confidence            45678899999999999999998  8889999999999999999875443344888999999999987 56677899999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+|+||
T Consensus       213 ~~vr~wD  219 (311)
T KOG0277|consen  213 NLVRGWD  219 (311)
T ss_pred             ceEEEEe
Confidence            9999997

>KOG0278|consensus

Probab=99.50  E-value=1.7e-13  Score=74.89  Aligned_cols=69  Identities=26%  Similarity=0.308  Sum_probs=62.6

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .|.+.+++   |+.+.+++++.|..+..||..++..+..+ ++|.+.|.+++|+|+|...++++.||+||+|+
T Consensus       226 nV~SASL~---P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  226 NVESASLH---PKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             cccccccc---CCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            35566677   67799999999999999999999998886 88999999999999999999999999999995

>KOG0295|consensus

Probab=99.48  E-value=1.4e-12  Score=74.07  Aligned_cols=84  Identities=25%  Similarity=0.298  Sum_probs=78.4

Q ss_pred             CCccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           2 ASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ++.+..+.++.+|...|..++|+   +.|++++++.+|+++++||+.+..+...+..|..-+..++|..+..++++++-|
T Consensus       321 v~tg~cL~tL~ghdnwVr~~af~---p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  321 VSTGMCLFTLVGHDNWVRGVAFS---PGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             ccCCeEEEEEecccceeeeeEEc---CCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence            35678899999999999999999   799999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      .++++|.
T Consensus       398 qt~KvwE  404 (406)
T KOG0295|consen  398 QTVKVWE  404 (406)
T ss_pred             ceeeeee
Confidence            9999984

>KOG0973|consensus

Probab=99.48  E-value=3.2e-13  Score=84.05  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=76.3

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +.+..+.+|.+.|.++.|+   +++.++++++.|++|.+|+..+...+..+.+|.+.|..+.|.|-|+++++.+.|++++
T Consensus       120 k~~~~l~~H~~DV~Dv~Ws---p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtik  196 (942)
T KOG0973|consen  120 KVVSILRGHDSDVLDVNWS---PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLK  196 (942)
T ss_pred             eEEEEEecCCCccceeccC---CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEE
Confidence            5788899999999999999   7999999999999999999998888999999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|+
T Consensus       197 vwr  199 (942)
T KOG0973|consen  197 VWR  199 (942)
T ss_pred             EEE
Confidence            995

>KOG0281|consensus

Probab=99.48  E-value=2.1e-14  Score=81.43  Aligned_cols=79  Identities=24%  Similarity=0.341  Sum_probs=70.7

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ++...++++.+|+..+.|+.+.     ++++++|+.|.+|++|++..|.+++.+++|...|.++.|.  ...+++++.||
T Consensus       348 st~efvRtl~gHkRGIAClQYr-----~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDG  420 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDG  420 (499)
T ss_pred             cceeeehhhhcccccceehhcc-----CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccc
Confidence            4566788999999999998874     8899999999999999999999999999999999999985  55788999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      +|++||
T Consensus       421 kikvWd  426 (499)
T KOG0281|consen  421 KIKVWD  426 (499)
T ss_pred             eEEEEe
Confidence            999997

>KOG0319|consensus

Probab=99.48  E-value=4.8e-13  Score=81.10  Aligned_cols=82  Identities=27%  Similarity=0.287  Sum_probs=77.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +...++++.||+..|....|-   .++..++|++.||.+++|++.++.++..+..|..+|++++-++....+.+++.|+.
T Consensus       536 ~fSClkT~eGH~~aVlra~F~---~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~  612 (775)
T KOG0319|consen  536 TFSCLKTFEGHTSAVLRASFI---RNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR  612 (775)
T ss_pred             cceeeeeecCccceeEeeeee---eCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE
Confidence            456789999999999999999   79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +.+|.
T Consensus       613 i~~wk  617 (775)
T KOG0319|consen  613 IIFWK  617 (775)
T ss_pred             EEEee
Confidence            99983

>KOG0281|consensus

Probab=99.47  E-value=1.4e-13  Score=78.15  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=68.8

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ..++.+.||++.|.|+.|.     .+.+++|+.|.++.+||+.+++.+..+-.|...|.++.|+.  .+++++++|.+++
T Consensus       228 ~c~~~L~GHtGSVLCLqyd-----~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsia  300 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYD-----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIA  300 (499)
T ss_pred             HHHHhhhcCCCcEEeeecc-----ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeE
Confidence            3567789999999999986     56999999999999999999999999999999999999974  4788999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       301 VWd  303 (499)
T KOG0281|consen  301 VWD  303 (499)
T ss_pred             EEe
Confidence            997

>KOG0296|consensus

Probab=99.46  E-value=1.4e-12  Score=74.05  Aligned_cols=81  Identities=21%  Similarity=0.304  Sum_probs=75.7

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ...+.++..|+..|.+++.+   |+.+++++|+.|-.-.+|++.++..+..+.+|+..|.++.|++++.+++++..++.+
T Consensus        54 DdS~~tF~~H~~svFavsl~---P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLH---PNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             ccceeehhhcCCceEEEEeC---CCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence            34577899999999999999   788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++|+
T Consensus       131 ~v~~  134 (399)
T KOG0296|consen  131 LVFK  134 (399)
T ss_pred             EEEE
Confidence            9984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.46  E-value=1.9e-12  Score=70.77  Aligned_cols=78  Identities=32%  Similarity=0.436  Sum_probs=70.1

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      +.++++|..+|.++.|+   ++++.+++++.++.+.+|+...+.....+..+...+..+.|++++..+++++.++.+++|
T Consensus         2 ~~~~~~h~~~i~~~~~~---~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFS---PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEc---CCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence            35677899999999999   789999999999999999998877777888888888899999999999999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus        79 ~   79 (289)
T cd00200          79 D   79 (289)
T ss_pred             E
Confidence            6

>KOG0291|consensus

Probab=99.46  E-value=8.1e-13  Score=80.59  Aligned_cols=82  Identities=26%  Similarity=0.237  Sum_probs=70.9

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      .+|+.+..|.||.++|.++.|+   +.+..+++++.|++|++|++-... ....+. ....+..++|+|+|..++.+.-|
T Consensus       466 qTGqllDiLsGHEgPVs~l~f~---~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  466 QTGQLLDILSGHEGPVSGLSFS---PDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             ecCeeeehhcCCCCcceeeEEc---cccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEec
Confidence            4688899999999999999999   799999999999999999986543 233333 55678999999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      |.|.+||
T Consensus       542 gqItf~d  548 (893)
T KOG0291|consen  542 GQITFFD  548 (893)
T ss_pred             ceEEEEE
Confidence            9999997

>KOG0647|consensus

Probab=99.46  E-value=1e-12  Score=73.14  Aligned_cols=76  Identities=18%  Similarity=0.185  Sum_probs=67.4

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC--eEEEecCCCeEEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS--KAASGAADFQAKA   86 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~i~~   86 (88)
                      +....|.++|.+++|+   .+|..+++++.|+.+++||+.++ ....+..|.+.|..+.|.+...  .+++++.|.+|+.
T Consensus        66 ka~~~~~~PvL~v~Ws---ddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf  141 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWS---DDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF  141 (347)
T ss_pred             hhhhccCCCeEEEEEc---cCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceee
Confidence            3455688999999999   89999999999999999999977 5678888999999999977655  8889999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       142 WD  143 (347)
T KOG0647|consen  142 WD  143 (347)
T ss_pred             cc
Confidence            98

>KOG0282|consensus

Probab=99.45  E-value=2.1e-13  Score=79.35  Aligned_cols=81  Identities=23%  Similarity=0.265  Sum_probs=72.8

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCC-CeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA-SKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~   82 (88)
                      .+..++++.+|..+|..++|+   .+|..+.+++.|+.+++||+.+|.++..+.. ...+.++.|+|++ +.+++++.|+
T Consensus       247 ~~~~lrtf~gH~k~Vrd~~~s---~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~  322 (503)
T KOG0282|consen  247 DRRCLRTFKGHRKPVRDASFN---NCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDK  322 (503)
T ss_pred             Ccceehhhhcchhhhhhhhcc---ccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCC
Confidence            467899999999999999999   8999999999999999999999999888874 3556889999988 6778999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .|+.||
T Consensus       323 ki~~wD  328 (503)
T KOG0282|consen  323 KIRQWD  328 (503)
T ss_pred             cEEEEe
Confidence            999997

>KOG1273|consensus

Probab=99.44  E-value=5.1e-13  Score=74.97  Aligned_cols=68  Identities=19%  Similarity=0.250  Sum_probs=63.9

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..|+.|+   +.|..++.|+.+|.+.+||+.+...-+.+.+|...|.+++|+++|+.+++++.|..+.+||
T Consensus        26 a~~~~Fs---~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   26 AECCQFS---RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD   93 (405)
T ss_pred             cceEEec---cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence            6789999   8999999999999999999988776678889999999999999999999999999999997

>KOG0264|consensus

Probab=99.44  E-value=7.2e-13  Score=76.37  Aligned_cols=81  Identities=22%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC--CCEEEEecCCCCeEEEEEECCCCC-eEEEecCCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT--GDWIGTFEGHKGCVWGVDINKDAS-KAASGAADF   82 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~   82 (88)
                      .+...+.+|...|..++|+|  .....+++++.|+.+.+||.++  .+......+|.+.+++++|+|-+. .+|+++.|+
T Consensus       218 ~p~~~~~~h~~~VeDV~~h~--~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~  295 (422)
T KOG0264|consen  218 DPKTIFSGHEDVVEDVAWHP--LHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK  295 (422)
T ss_pred             cceEEeecCCcceehhhccc--cchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence            35667889999999999998  7788999999999999999984  455566788999999999999655 567899999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++.+||
T Consensus       296 tV~LwD  301 (422)
T KOG0264|consen  296 TVALWD  301 (422)
T ss_pred             cEEEee
Confidence            999997

>KOG0278|consensus

Probab=99.44  E-value=2.5e-13  Score=74.27  Aligned_cols=83  Identities=75%  Similarity=1.238  Sum_probs=75.9

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +...++.+|+.+|..++|+|+.++|-+|+++++|+...+..-.++.++..+.+|++.|+...++.+....++++.|-+-+
T Consensus         5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftak   84 (334)
T KOG0278|consen    5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK   84 (334)
T ss_pred             cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence            34457789999999999999999999999999999999998889999999999999999999988888888999999888


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus        85 vw~   87 (334)
T KOG0278|consen   85 VWD   87 (334)
T ss_pred             hhh
Confidence            886

>KOG0294|consensus

Probab=99.43  E-value=2.1e-12  Score=72.33  Aligned_cols=82  Identities=20%  Similarity=0.218  Sum_probs=72.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCC--cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESG--YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ..+.+..+..|.+.+.++.|.   ++.  .+|+++..||.+.+|++..=..+..+++|.++|+.++.+|.+.+.++.+.|
T Consensus        72 k~~qlg~ll~HagsitaL~F~---~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D  148 (362)
T KOG0294|consen   72 KRKQLGILLSHAGSITALKFY---PPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD  148 (362)
T ss_pred             chhhhcceeccccceEEEEec---CCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCC
Confidence            345566777899999999998   344  499999999999999997667788999999999999999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+|.||
T Consensus       149 ~~lr~WN  155 (362)
T KOG0294|consen  149 QVLRTWN  155 (362)
T ss_pred             ceeeeeh
Confidence            9999997

>KOG0289|consensus

Probab=99.43  E-value=1.4e-12  Score=75.55  Aligned_cols=70  Identities=20%  Similarity=0.237  Sum_probs=66.3

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      -.+.+.+|+   ++|-.+..+..|+.+++||+.+...+..|.+|.+.|..++|+.+|.++++++.|+.+++||
T Consensus       348 v~~ts~~fH---pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  348 VEYTSAAFH---PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD  417 (506)
T ss_pred             ceeEEeeEc---CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence            347889999   7999999999999999999999889999999999999999999999999999999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.42  E-value=1e-11  Score=77.78  Aligned_cols=82  Identities=22%  Similarity=0.254  Sum_probs=70.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC-CCCCeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN-KDASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~d~   82 (88)
                      .++.+..+.+|.+.|.+++|+|  .++..+++++.|+.+++|++..+..+..+..+ ..+.++.|+ +++..+++++.|+
T Consensus       564 ~~~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg  640 (793)
T PLN00181        564 RSQLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADH  640 (793)
T ss_pred             CCeEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCC
Confidence            3566778889999999999995  57899999999999999999888877777654 568888884 5788999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .|++||
T Consensus       641 ~I~iwD  646 (793)
T PLN00181        641 KVYYYD  646 (793)
T ss_pred             eEEEEE
Confidence            999997

>KOG0275|consensus

Probab=99.42  E-value=1.5e-13  Score=77.58  Aligned_cols=81  Identities=23%  Similarity=0.276  Sum_probs=74.1

Q ss_pred             cceeEEec-CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           5 RQIPLTCS-GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      |..++.+. .|+..|.|+.|+   .++..+.+++.|..+++.-+.+++.+..+.+|..-|+...|.++|..+++++.|++
T Consensus       295 G~ClRrFdrAHtkGvt~l~FS---rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt  371 (508)
T KOG0275|consen  295 GQCLRRFDRAHTKGVTCLSFS---RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT  371 (508)
T ss_pred             chHHHHhhhhhccCeeEEEEc---cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence            44555555 689999999999   79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++|+
T Consensus       372 vkvW~  376 (508)
T KOG0275|consen  372 VKVWH  376 (508)
T ss_pred             EEEec
Confidence            99996

>KOG0642|consensus

Probab=99.42  E-value=3.5e-12  Score=75.56  Aligned_cols=82  Identities=21%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC----------CEEEEecCCCCeEEEEEECCCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG----------DWIGTFEGHKGCVWGVDINKDAS   73 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~   73 (88)
                      .-+++.++.+|.++|.|+++.   .+++.+++++-|+.|+.|++...          .....+.||..+++.++++....
T Consensus       333 ~~epi~tfraH~gPVl~v~v~---~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~  409 (577)
T KOG0642|consen  333 DVEPILTFRAHEGPVLCVVVP---SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD  409 (577)
T ss_pred             ceeeeEEEecccCceEEEEec---CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc
Confidence            346888999999999999998   89999999999999999955421          23356789999999999999999


Q ss_pred             eEEEecCCCeEEEcC
Q psy6444          74 KAASGAADFQAKALK   88 (88)
Q Consensus        74 ~~~~~~~d~~i~~~~   88 (88)
                      .+++++.|+++|.|+
T Consensus       410 ~Llscs~DgTvr~w~  424 (577)
T KOG0642|consen  410 RLLSCSSDGTVRLWE  424 (577)
T ss_pred             ceeeecCCceEEeec
Confidence            999999999999995

>KOG0269|consensus

Probab=99.42  E-value=5.4e-13  Score=81.29  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=70.0

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ...++.+-...|.++.|+|  ..+..++++..+|.+.+||++... +..++..|.+.+.++.|+|++.++++|+.|+.++
T Consensus       168 S~~t~~~nSESiRDV~fsp--~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk  245 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSP--GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK  245 (839)
T ss_pred             ccccccccchhhhceeecc--CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence            3445555567799999998  888999999999999999997544 5677889999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       246 iWd  248 (839)
T KOG0269|consen  246 IWD  248 (839)
T ss_pred             EEe
Confidence            997

>KOG0310|consensus

Probab=99.42  E-value=1.4e-12  Score=75.96  Aligned_cols=80  Identities=21%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAK   85 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~   85 (88)
                      .++.+++|+.++..+.|+|  -+...+.+++.|+.+++|++.+......+.+|+..|++.+++|... .+++++.|++||
T Consensus       102 iLR~~~ah~apv~~~~f~~--~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr  179 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSP--QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR  179 (487)
T ss_pred             HHHHHhhccCceeEEEecc--cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence            4667889999999999996  6667888999999999999987776568899999999999999755 567999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       180 l~D  182 (487)
T KOG0310|consen  180 LWD  182 (487)
T ss_pred             EEE
Confidence            997

>KOG0308|consensus

Probab=99.41  E-value=2.9e-12  Score=77.13  Aligned_cols=81  Identities=19%  Similarity=0.218  Sum_probs=73.4

Q ss_pred             cceeEEec-CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           5 RQIPLTCS-GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ......+. |+...+.+++.+   +.|..+++|+..+.+++||..+...+..+.+|..-|..+..+.+|..+++++.|++
T Consensus       160 ~~t~~sl~sG~k~siYSLA~N---~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt  236 (735)
T KOG0308|consen  160 NVTVNSLGSGPKDSIYSLAMN---QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT  236 (735)
T ss_pred             ccccccCCCCCccceeeeecC---CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence            34445555 788999999998   78889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++||
T Consensus       237 IrlWd  241 (735)
T KOG0308|consen  237 IRLWD  241 (735)
T ss_pred             EEeee
Confidence            99997

>KOG0313|consensus

Probab=99.41  E-value=3.9e-12  Score=72.61  Aligned_cols=80  Identities=21%  Similarity=0.229  Sum_probs=70.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .+.++.++.||+++|..+.|+    +...+++++.|++|+.||+..+.....+.+. ..+.+++.++...++++++.|..
T Consensus       249 ~r~P~vtl~GHt~~Vs~V~w~----d~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~  323 (423)
T KOG0313|consen  249 TRTPLVTLEGHTEPVSSVVWS----DATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH  323 (423)
T ss_pred             ccCceEEecccccceeeEEEc----CCCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc
Confidence            456889999999999999998    4789999999999999999988877666643 56788999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +|+||
T Consensus       324 irl~D  328 (423)
T KOG0313|consen  324 IRLWD  328 (423)
T ss_pred             eeecC
Confidence            99997

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.41  E-value=1.8e-11  Score=66.92  Aligned_cols=81  Identities=31%  Similarity=0.409  Sum_probs=71.2

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ++.+..+..|...+.++.|+   +++..+++++.++.+.+|+...+.....+..+...+..++|++++..+++++.|+.+
T Consensus       209 ~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  285 (289)
T cd00200         209 GKCLGTLRGHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI  285 (289)
T ss_pred             CceecchhhcCCceEEEEEc---CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence            45566666788899999999   678888888889999999998888888888888899999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++|+
T Consensus       286 ~iw~  289 (289)
T cd00200         286 RIWD  289 (289)
T ss_pred             EecC
Confidence            9996

>KOG4283|consensus

Probab=99.41  E-value=2.8e-12  Score=71.63  Aligned_cols=84  Identities=24%  Similarity=0.244  Sum_probs=68.6

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-CEEEE--------------ecCCCCeEEEEE
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-DWIGT--------------FEGHKGCVWGVD   67 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~i~~~~   67 (88)
                      ..|..-.+|.||+..|.++.|+|  ...-.+++++.|+.+++||++.. .+...              -..|.+.+..++
T Consensus       176 ~SGs~sH~LsGHr~~vlaV~Wsp--~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  176 ASGSFSHTLSGHRDGVLAVEWSP--SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             cCCcceeeeccccCceEEEEecc--CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            45566788999999999999996  55567889999999999998743 11111              235778999999


Q ss_pred             ECCCCCeEEEecCCCeEEEcC
Q psy6444          68 INKDASKAASGAADFQAKALK   88 (88)
Q Consensus        68 ~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      |.-++.++++++.|..+++|+
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             ecccchhhhhccCccceEEee
Confidence            999999999999999999996

>KOG0313|consensus

Probab=99.40  E-value=4.3e-12  Score=72.42  Aligned_cols=79  Identities=23%  Similarity=0.271  Sum_probs=71.9

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      .+.++|.+|++.|..+.|+|  .+...|++++.|+.+++||++... .+..+.+|...|.++.|+. +..+++++.|.++
T Consensus       336 ~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l  412 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKL  412 (423)
T ss_pred             eeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceE
Confidence            46788999999999999998  788899999999999999999877 8899999999999999985 6788999999999


Q ss_pred             EEc
Q psy6444          85 KAL   87 (88)
Q Consensus        85 ~~~   87 (88)
                      +++
T Consensus       413 ~i~  415 (423)
T KOG0313|consen  413 RIF  415 (423)
T ss_pred             EEe
Confidence            986

>KOG0301|consensus

Probab=99.40  E-value=4.6e-12  Score=76.59  Aligned_cols=80  Identities=24%  Similarity=0.255  Sum_probs=72.6

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.++++.+|+.-|+.+++-    +...++|+++||.|++|++ .+..+..+.+|.+-+.++...+.+..++++++|++
T Consensus       168 ~~~~l~tf~gHtD~VRgL~vl----~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt  242 (745)
T KOG0301|consen  168 GGTLLKTFSGHTDCVRGLAVL----DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT  242 (745)
T ss_pred             CCchhhhhccchhheeeeEEe----cCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence            456788999999999999986    4668899999999999999 58889999999999999998888889999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++|+
T Consensus       243 lriW~  247 (745)
T KOG0301|consen  243 LRIWK  247 (745)
T ss_pred             EEEee
Confidence            99995

>KOG0293|consensus

Probab=99.39  E-value=2.6e-12  Score=74.18  Aligned_cols=79  Identities=23%  Similarity=0.114  Sum_probs=69.7

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      -.+++..|+..|..+.|+   ++|.+++++++|.+..+|.+....   ....+.+|...|..+.|+||.+++++++.+..
T Consensus       216 t~qil~~htdEVWfl~FS---~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFS---HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             hhhhHhhCCCcEEEEEEc---CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            345678899999999999   899999999999999999765433   45778999999999999999999999998888


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +.+||
T Consensus       293 ~~lwD  297 (519)
T KOG0293|consen  293 LSLWD  297 (519)
T ss_pred             eeecc
Confidence            99997

>KOG0268|consensus

Probab=99.39  E-value=6.5e-13  Score=75.50  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=68.3

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ....++....+|.++|.+++|+   |.|+-+++|+.|++|++|.+..+.....+ ...-..|.++.|+.|..++++++.|
T Consensus       260 ~l~~p~~v~~dhvsAV~dVdfs---ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd  336 (433)
T KOG0268|consen  260 NLSRPLNVHKDHVSAVMDVDFS---PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD  336 (433)
T ss_pred             hhcccchhhcccceeEEEeccC---CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence            3456788889999999999999   79999999999999999998755421111 1123567899999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+|+|.
T Consensus       337 ~nvRlWk  343 (433)
T KOG0268|consen  337 GNVRLWK  343 (433)
T ss_pred             cceeeee
Confidence            9999993

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.38  E-value=1.2e-11  Score=77.38  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=65.0

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~~   88 (88)
                      ...+.++.|+|  ..+..+++++.|+.+++||+.++..+..+.+|.+.|++++|+| ++.++++++.|+.+++||
T Consensus       532 ~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd  604 (793)
T PLN00181        532 RSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS  604 (793)
T ss_pred             cCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence            46788899985  5678999999999999999998888889999999999999997 788999999999999997

>KOG0302|consensus

Probab=99.38  E-value=8.4e-12  Score=71.35  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC---CCEEEEecCCCCeEEEEEECCC-CCeEEEecCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT---GDWIGTFEGHKGCVWGVDINKD-ASKAASGAAD   81 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d   81 (88)
                      +.....+.|.+-|..++|+   ....+|++|+.+|.+.+||++.   +..+..++.|+..|.++.|+|. ...++.++.|
T Consensus       293 ~~~~~~kAh~sDVNVISWn---r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D  369 (440)
T KOG0302|consen  293 KAAVSTKAHNSDVNVISWN---RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED  369 (440)
T ss_pred             cceeEeeccCCceeeEEcc---CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence            4444557899999999999   5666999999999999999874   4577899999999999999995 4466788899


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      ..+.+||
T Consensus       370 ~QitiWD  376 (440)
T KOG0302|consen  370 NQITIWD  376 (440)
T ss_pred             CcEEEEE
Confidence            9999997

>KOG0274|consensus

Probab=99.37  E-value=1.5e-11  Score=74.08  Aligned_cols=79  Identities=24%  Similarity=0.362  Sum_probs=71.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +++.+..+.+|+++|.++..+     +..+++++.|+.|.+|++..++.+..+.+|..+|.++.+... ..+++++.|++
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~  393 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT  393 (537)
T ss_pred             CcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence            577888888999999999874     889999999999999999999999999999999999977654 77889999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++||
T Consensus       394 IkvWd  398 (537)
T KOG0274|consen  394 IKVWD  398 (537)
T ss_pred             eEeec
Confidence            99997

>KOG0283|consensus

Probab=99.37  E-value=8.2e-12  Score=76.26  Aligned_cols=79  Identities=19%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ..+.++. |...|+|++|+|  -+.+++++|+-|+.+++|++...+.+.... -...|++++|.|+|...+-|+.+|.++
T Consensus       401 ~CL~~F~-HndfVTcVaFnP--vDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~  476 (712)
T KOG0283|consen  401 ECLKVFS-HNDFVTCVAFNP--VDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCR  476 (712)
T ss_pred             ceeeEEe-cCCeeEEEEecc--cCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEE
Confidence            4455544 899999999998  788999999999999999998655444433 448899999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|+
T Consensus       477 fY~  479 (712)
T KOG0283|consen  477 FYD  479 (712)
T ss_pred             EEE
Confidence            875

>KOG2394|consensus

Probab=99.36  E-value=1.7e-12  Score=76.79  Aligned_cols=78  Identities=19%  Similarity=0.188  Sum_probs=68.7

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ++..+.-.++.+..++|+   ++|..|+..+.|+.+++|+..+...+..++...+...+++|+||+.+++++++|-.+.|
T Consensus       282 Pv~~w~~~~g~in~f~FS---~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtV  358 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFS---PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTV  358 (636)
T ss_pred             ccceeEeccccccceeEc---CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEE
Confidence            444444455678888999   79999999999999999999888877888888899999999999999999999999999


Q ss_pred             c
Q psy6444          87 L   87 (88)
Q Consensus        87 ~   87 (88)
                      |
T Consensus       359 w  359 (636)
T KOG2394|consen  359 W  359 (636)
T ss_pred             E
Confidence            8

>KOG1332|consensus

Probab=99.35  E-value=1e-11  Score=67.77  Aligned_cols=80  Identities=24%  Similarity=0.369  Sum_probs=67.9

Q ss_pred             ceeEEecCCCCCEEEEEEE-ecCCCCcEEEEEeCCCCEEEEECCCCCE--EEEecCCCCeEEEEEECCCCC--eEEEecC
Q psy6444           6 QIPLTCSGHTRPVVHLAFS-DITESGYFLISACKDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDAS--KAASGAA   80 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~--~~~~~~~   80 (88)
                      +++..|.||.++|..++|. |  .-|..|++++.|+.+.+|.-.+++.  ......|...+++++|.|+..  .+++++.
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahP--k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHP--KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             eeeeEecCCCCCeeEEeeccc--ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence            6788999999999999996 3  4789999999999999999887753  344567889999999999744  6779999


Q ss_pred             CCeEEEc
Q psy6444          81 DFQAKAL   87 (88)
Q Consensus        81 d~~i~~~   87 (88)
                      ||.|.++
T Consensus       125 DG~vsvl  131 (299)
T KOG1332|consen  125 DGKVSVL  131 (299)
T ss_pred             CCcEEEE
Confidence            9999875

>KOG1539|consensus

Probab=99.34  E-value=1.1e-11  Score=76.35  Aligned_cols=80  Identities=20%  Similarity=0.173  Sum_probs=69.6

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC-C
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD-F   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d-~   82 (88)
                      ..+.++.+.||+..+.+.+|+   ++|+|+++++.|++|++||+.++..+-.+.. ...+.++.|+|.+.++++...| .
T Consensus       565 t~kvvR~f~gh~nritd~~FS---~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~  640 (910)
T KOG1539|consen  565 TRKVVREFWGHGNRITDMTFS---PDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQN  640 (910)
T ss_pred             hhhhhHHhhccccceeeeEeC---CCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCc
Confidence            345778899999999999999   8999999999999999999999988776653 4677889999999999998877 4


Q ss_pred             eEEEc
Q psy6444          83 QAKAL   87 (88)
Q Consensus        83 ~i~~~   87 (88)
                      -|.+|
T Consensus       641 gIylW  645 (910)
T KOG1539|consen  641 GIYLW  645 (910)
T ss_pred             eEEEE
Confidence            57777

>KOG0973|consensus

Probab=99.34  E-value=1.5e-11  Score=76.85  Aligned_cols=81  Identities=23%  Similarity=0.260  Sum_probs=70.6

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-------C-----------CEEEEecCCCCeEEEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-------G-----------DWIGTFEGHKGCVWGV   66 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~~~~~~i~~~   66 (88)
                      .+++.+...|.+.|.|++|+   ++|+.+++|++|+.+.+|....       +           +....+.+|.+.|..+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S---~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv  135 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFS---PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV  135 (942)
T ss_pred             chhheeeccccCceeEEEEC---CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee
Confidence            45667788899999999999   8999999999999999997652       0           1345667899999999


Q ss_pred             EECCCCCeEEEecCCCeEEEcC
Q psy6444          67 DINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .|+|++.++++++-|+++-+||
T Consensus       136 ~Wsp~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen  136 NWSPDDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             ccCCCccEEEEecccceEEEEc
Confidence            9999999999999999999997

>KOG0294|consensus

Probab=99.34  E-value=9.3e-12  Score=69.79  Aligned_cols=77  Identities=19%  Similarity=0.233  Sum_probs=70.4

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC--eEEEecCCCeE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS--KAASGAADFQA   84 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~i   84 (88)
                      ++..+..|.+++.+++.+     +.++++++.|..|.+||.+....+..+..|.+.|+++.|.+...  .+++++.||.|
T Consensus        35 ~lF~~~aH~~sitavAVs-----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS-----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             ccccccccccceeEEEec-----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            477888999999999875     89999999999999999998888899999999999999999765  88999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      -+|+
T Consensus       110 ~iw~  113 (362)
T KOG0294|consen  110 IIWR  113 (362)
T ss_pred             EEEE
Confidence            9995

>KOG0267|consensus

Probab=99.34  E-value=2.9e-12  Score=77.90  Aligned_cols=81  Identities=22%  Similarity=0.245  Sum_probs=75.0

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      .+.+++|.||...+..+.|+   |-+++.++++.|..+++||.+...++..+.+|.+.+..++|+|+|+++++++.|+++
T Consensus       102 Ak~vrtLtgh~~~~~sv~f~---P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv  178 (825)
T KOG0267|consen  102 AKIVRTLTGHLLNITSVDFH---PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV  178 (825)
T ss_pred             hhhhhhhhccccCcceeeec---cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence            45678999999999999999   689999999999999999998777789999999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus       179 ki~d  182 (825)
T KOG0267|consen  179 KIWD  182 (825)
T ss_pred             eeec
Confidence            9997

>KOG0293|consensus

Probab=99.33  E-value=9.3e-12  Score=71.99  Aligned_cols=80  Identities=21%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      +..+++.+|..+|..+.|+   |+.+.+++++.+..+.+||+.++.....+.. +...+.+.+|.||+..+++++.|+.+
T Consensus       260 kl~~tlvgh~~~V~yi~wS---PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i  336 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWS---PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTI  336 (519)
T ss_pred             eeeeeeecccCceEEEEEC---CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcE
Confidence            4578999999999999999   7999999999999999999999987666643 35677888999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ..||
T Consensus       337 ~~wd  340 (519)
T KOG0293|consen  337 IMWD  340 (519)
T ss_pred             EEec
Confidence            9986

>KOG0306|consensus

Probab=99.33  E-value=1.3e-11  Score=75.52  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=74.5

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +-..+|.||.-||.|++.+   +++..+++++.|+.+++|-++-|.+-..+-+|...|.++.|-|+...+.++++|+.++
T Consensus       541 KFflsLYGHkLPV~smDIS---~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  541 KFFLSLYGHKLPVLSMDIS---PDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             eeeeeecccccceeEEecc---CCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence            4456889999999999999   8999999999999999999988888788889999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      .||
T Consensus       618 qWD  620 (888)
T KOG0306|consen  618 QWD  620 (888)
T ss_pred             eec
Confidence            997

>KOG0305|consensus

Probab=99.33  E-value=3e-11  Score=71.63  Aligned_cols=82  Identities=23%  Similarity=0.242  Sum_probs=68.5

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe--CCCCEEEEECCCCCEEE----------------------------
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC--KDGKPMLRQGDTGDWIG----------------------------   54 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------------------------   54 (88)
                      ..++..+..|++.|-.++|+|  .....|++|+  .|+.+++|+..++..+.                            
T Consensus       333 ~~p~~~~~~H~aAVKA~awcP--~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~  410 (484)
T KOG0305|consen  333 PEPKFTFTEHTAAVKALAWCP--WQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE  410 (484)
T ss_pred             ccccEEEeccceeeeEeeeCC--CccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCC
Confidence            467788899999999999998  8888999854  57889999877553322                            


Q ss_pred             ---------------EecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          55 ---------------TFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        55 ---------------~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                                     .+.+|..+|..++++|++..+++++.|.++++|+
T Consensus       411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence                           2247889999999999999999999999999996

>KOG0640|consensus

Probab=99.32  E-value=6.1e-12  Score=70.74  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=66.5

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC------------CEEEEe-----------------
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG------------DWIGTF-----------------   56 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----------------   56 (88)
                      ..+++|..|...|.++.|+   |....|++++.|+.+++||+...            ..++.+                 
T Consensus       163 PvIRTlYDH~devn~l~FH---Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~  239 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFH---PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT  239 (430)
T ss_pred             ceEeehhhccCcccceeec---chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc
Confidence            4688999999999999999   68889999999999999987531            011111                 


Q ss_pred             ------------------cCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          57 ------------------EGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        57 ------------------~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                                        ..|.+.|..+.+++.++.++++++||-|++||
T Consensus       240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             eeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence                              25678899999999999999999999999997

>KOG1446|consensus

Probab=99.32  E-value=5.9e-11  Score=66.29  Aligned_cols=80  Identities=14%  Similarity=0.035  Sum_probs=67.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +.+.++.+.||+..|..+..+   |-++.+++++.|+.+++||++..++...+......+  .+|.|.|-.+|.+.....
T Consensus        89 dNkylRYF~GH~~~V~sL~~s---P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVS---PKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSEL  163 (311)
T ss_pred             cCceEEEcCCCCceEEEEEec---CCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCe
Confidence            568899999999999999999   567999999999999999998766655555443333  578999999998888778


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |+++|
T Consensus       164 IkLyD  168 (311)
T KOG1446|consen  164 IKLYD  168 (311)
T ss_pred             EEEEE
Confidence            98886

>KOG0275|consensus

Probab=99.32  E-value=9.9e-13  Score=74.35  Aligned_cols=71  Identities=24%  Similarity=0.340  Sum_probs=66.3

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      +..+|.|+.|+   .+.+.+++|+.||.|++|.+.++.+++.+. .|...|.++.|+.|+.++++++.|.++|+.
T Consensus       262 md~aVlci~FS---RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH  333 (508)
T KOG0275|consen  262 MDDAVLCISFS---RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIH  333 (508)
T ss_pred             cccceEEEeec---ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEe
Confidence            56789999999   899999999999999999999999998887 699999999999999999999999999875

>KOG0305|consensus

Probab=99.31  E-value=6.8e-12  Score=74.28  Aligned_cols=76  Identities=26%  Similarity=0.226  Sum_probs=67.5

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEe--cCCCeEEE
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASG--AADFQAKA   86 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~--~~d~~i~~   86 (88)
                      ++.+|+..|-.+.|+   +++..+++++.|..+.+||.........+..|..+|.+++|+|- ...+|++  +.|+.|++
T Consensus       296 ~~~~H~qeVCgLkws---~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f  372 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKWS---PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF  372 (484)
T ss_pred             hhhcccceeeeeEEC---CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence            478899999999999   89999999999999999999777788899999999999999994 4566764  48899999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       373 wn  374 (484)
T KOG0305|consen  373 WN  374 (484)
T ss_pred             EE
Confidence            97

>KOG1310|consensus

Probab=99.31  E-value=1.7e-11  Score=73.21  Aligned_cols=77  Identities=22%  Similarity=0.267  Sum_probs=68.1

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCC--CCeEEEecCCCeEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKD--ASKAASGAADFQAK   85 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~~~~~~~d~~i~   85 (88)
                      ..|+||++-|.++.|+   .+|.+|++|+.|..+.+||.-..+.+..+ .+|..-|.++.|-|.  .++++++..|..|+
T Consensus        44 ~eL~GH~GCVN~LeWn---~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWN---ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhccccceecceeec---CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            4578999999999999   99999999999999999999877776665 579999999999884  55788999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      ++|
T Consensus       121 lfd  123 (758)
T KOG1310|consen  121 LFD  123 (758)
T ss_pred             EEe
Confidence            986

>KOG0303|consensus

Probab=99.30  E-value=5.2e-12  Score=72.59  Aligned_cols=77  Identities=21%  Similarity=0.219  Sum_probs=67.4

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-------CEEEEecCCCCeEEEEEECCC-CCeEEEecCC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKD-ASKAASGAAD   81 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d   81 (88)
                      .+.||+++|..++|+|  .+-+.+++|+.|..+.+|++..+       ..+..+.+|..+|-.+.|+|. .+.+++++.|
T Consensus        76 ~v~GHt~~vLDi~w~P--fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCP--FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CccCccccccccccCc--cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            3568999999999998  88999999999999999998753       346778899999999999996 4467799999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      ..+.+||
T Consensus       154 n~v~iWn  160 (472)
T KOG0303|consen  154 NTVSIWN  160 (472)
T ss_pred             ceEEEEe
Confidence            9999997

>KOG0274|consensus

Probab=99.30  E-value=1e-10  Score=70.67  Aligned_cols=80  Identities=28%  Similarity=0.315  Sum_probs=69.1

Q ss_pred             ccceeEE-ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           4 IRQIPLT-CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ++..+.+ +.||.+.|..+.+.   ..+..+++|+.|.++++||..++.+...+.+|...+.++...  ...+.+++.|.
T Consensus       237 ~~~~i~~~l~GH~g~V~~l~~~---~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~  311 (537)
T KOG0274|consen  237 NGYLILTRLVGHFGGVWGLAFP---SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDN  311 (537)
T ss_pred             cceEEEeeccCCCCCceeEEEe---cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCc
Confidence            4455666 99999999999997   668999999999999999999999999999999999888654  44666788999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++++|+
T Consensus       312 tVkVW~  317 (537)
T KOG0274|consen  312 TVKVWD  317 (537)
T ss_pred             eEEEEe
Confidence            999996

>KOG0296|consensus

Probab=99.30  E-value=8.4e-11  Score=67.00  Aligned_cols=72  Identities=14%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .-..+..+.|+   +.+..++.|+.||.+.+|.+.+......+.+|...+.+-.|.|+|..++++..|++|++||
T Consensus       147 e~~dieWl~WH---p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  147 EVEDIEWLKWH---PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             ccCceEEEEec---ccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence            34557778899   6899999999999999999998788899999999999999999999999999999999997

>KOG1539|consensus

Probab=99.30  E-value=6.3e-11  Score=73.12  Aligned_cols=81  Identities=19%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             cceeEEe---cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE----------------------------
Q psy6444           5 RQIPLTC---SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI----------------------------   53 (88)
Q Consensus         5 ~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   53 (88)
                      |....++   ..|.++|..++..   ...+.+++++.+|.+.+|+......+                            
T Consensus       480 Gi~r~sf~~~~ah~~~V~gla~D---~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf  556 (910)
T KOG1539|consen  480 GIHRKSFGDSPAHKGEVTGLAVD---GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF  556 (910)
T ss_pred             CeeecccccCccccCceeEEEec---CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence            3344455   4688999999988   67789999999999999987644311                            


Q ss_pred             -------------EEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          54 -------------GTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        54 -------------~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                                   +.+.+|.++|+.++|||+|+++++++.|++||+||
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence                         12247999999999999999999999999999998

>KOG0306|consensus

Probab=99.28  E-value=2.1e-11  Score=74.59  Aligned_cols=80  Identities=20%  Similarity=0.314  Sum_probs=72.8

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .+-+++-+|...|.++.|.   |....++++++|+.++-||-.+-..++.+.+|...|++++.+|+|.+++++++|.+||
T Consensus       583 DCHKS~fAHdDSvm~V~F~---P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIR  659 (888)
T KOG0306|consen  583 DCHKSFFAHDDSVMSVQFL---PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR  659 (888)
T ss_pred             hhhhhhhcccCceeEEEEc---ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence            3445566788999999999   6888999999999999999988888999999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|.
T Consensus       660 lwE  662 (888)
T KOG0306|consen  660 LWE  662 (888)
T ss_pred             eee
Confidence            994

>KOG0318|consensus

Probab=99.28  E-value=8.2e-11  Score=69.71  Aligned_cols=78  Identities=15%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE-EEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ...+..|++++.+++|+   +++.+|+++...+.+.+|++.+.+. ...+..|..+|.+++|+|+...+++++-|..+.+
T Consensus       480 e~~~~~h~a~iT~vayS---pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vii  556 (603)
T KOG0318|consen  480 EAKLLEHRAAITDVAYS---PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVII  556 (603)
T ss_pred             eeeeecccCCceEEEEC---CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEE
Confidence            33566799999999999   8999999999999999999987664 2344559999999999999999999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      |+
T Consensus       557 ys  558 (603)
T KOG0318|consen  557 YS  558 (603)
T ss_pred             EE
Confidence            84

>KOG0300|consensus

Probab=99.27  E-value=2.2e-11  Score=68.87  Aligned_cols=81  Identities=16%  Similarity=0.205  Sum_probs=75.6

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ..|+..|++|.+.|.+..|-   ..|+.+++++.|..-.+||+.++..+..+.+|.....+.+-+|..+++++++.|.+.
T Consensus       262 RvPl~~ltgH~~vV~a~dWL---~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTF  338 (481)
T KOG0300|consen  262 RVPLMRLTGHRAVVSACDWL---AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTF  338 (481)
T ss_pred             eeeeeeeeccccceEehhhh---cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCcee
Confidence            35778899999999999998   788999999999999999999999999999999999998889999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      |+||
T Consensus       339 RLWD  342 (481)
T KOG0300|consen  339 RLWD  342 (481)
T ss_pred             Eecc
Confidence            9997

>KOG0639|consensus

Probab=99.27  E-value=1.3e-11  Score=73.04  Aligned_cols=68  Identities=25%  Similarity=0.365  Sum_probs=63.4

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...++.+   ++.+..+++..||.|.+||+.+...++.+++|...+.++.++++|..+++++-|.++|.||
T Consensus       512 CyALa~s---pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  512 CYALAIS---PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hhhhhcC---CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence            4456667   7999999999999999999999999999999999999999999999999999999999997

>KOG0646|consensus

Probab=99.27  E-value=1.5e-11  Score=71.52  Aligned_cols=71  Identities=24%  Similarity=0.327  Sum_probs=66.4

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .++|.++.-+   ++|.+++.+.-.+.+.+|.+.+|..+..+..|...|+++.|+-|+.++++++.||.+.+|+
T Consensus        81 Pg~v~al~s~---n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~  151 (476)
T KOG0646|consen   81 PGPVHALASS---NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWL  151 (476)
T ss_pred             ccceeeeecC---CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence            4678899888   7999999998999999999999999999999999999999999999999999999999994

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.24  E-value=1.1e-10  Score=47.13  Aligned_cols=39  Identities=28%  Similarity=0.423  Sum_probs=36.4

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQ   46 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (88)
                      ++++.++++|.+.|.+++|+   +++..+++++.|+.+++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~---~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWS---PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEE---TTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEe---cccccceeeCCCCEEEEEC
Confidence            46788999999999999999   7899999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1274|consensus

Probab=99.24  E-value=1.3e-10  Score=72.17  Aligned_cols=82  Identities=20%  Similarity=0.193  Sum_probs=61.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec--------------------------
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE--------------------------   57 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   57 (88)
                      +....+++++|.++|.++.|+   ++++++++...||.+.+|+++++.....+.                          
T Consensus       127 D~s~~~~lrgh~apVl~l~~~---p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l  203 (933)
T KOG1274|consen  127 DSSQEKVLRGHDAPVLQLSYD---PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL  203 (933)
T ss_pred             ccchheeecccCCceeeeeEc---CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeE
Confidence            344567899999999999999   799999999999999999987543221110                          


Q ss_pred             --------------------------CCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          58 --------------------------GHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        58 --------------------------~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                                                .+...+..+.|+|.|.+++++..|+.|.|||
T Consensus       204 a~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  204 AVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN  260 (933)
T ss_pred             EeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence                                      1112256677888888888888888888886

>KOG0772|consensus

Probab=99.22  E-value=3.6e-11  Score=71.20  Aligned_cols=71  Identities=17%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCC--eEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKG--CVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +-++..+.|+   ++|.+++.++.||+|.+|+..+-.   ....-..|..  .|.++.|+++|+++++.+.|.++++||
T Consensus       317 Rv~~tsC~~n---rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  317 RVPVTSCAWN---RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             ccCceeeecC---CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            4567888999   799999999999999999975322   2223345765  899999999999999999999999997

>KOG2111|consensus

Probab=99.22  E-value=7.3e-10  Score=62.37  Aligned_cols=76  Identities=11%  Similarity=0.194  Sum_probs=67.0

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCC-EEEEECCCCCEEEEecC--CCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGK-PMLRQGDTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .....|.+.+.|++++   -+|..+++++..|+ |++||..++..+..+..  ....|.+++|+|+..+++.++..|++-
T Consensus       175 ~~I~AH~s~Iacv~Ln---~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH  251 (346)
T KOG2111|consen  175 SIINAHDSDIACVALN---LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH  251 (346)
T ss_pred             eEEEcccCceeEEEEc---CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence            5678899999999999   89999999999987 77999999998877753  456789999999999999999999987


Q ss_pred             Ec
Q psy6444          86 AL   87 (88)
Q Consensus        86 ~~   87 (88)
                      ++
T Consensus       252 iF  253 (346)
T KOG2111|consen  252 IF  253 (346)
T ss_pred             EE
Confidence            75

>KOG1446|consensus

Probab=99.22  E-value=6.3e-10  Score=62.29  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeC--CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACK--DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      .+++.++++..++-.+..+.|-   .....++.++.  |..|+..++.+.+.++.+.||...|..++.+|.+..+++++.
T Consensus        44 ~~g~~~~ti~skkyG~~~~~Ft---h~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~  120 (311)
T KOG1446|consen   44 LSGKQVKTINSKKYGVDLACFT---HHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL  120 (311)
T ss_pred             CCCceeeEeecccccccEEEEe---cCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc
Confidence            4567777777766666777776   44444444444  778999999999999999999999999999999999999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |.++|+||
T Consensus       121 D~tvrLWD  128 (311)
T KOG1446|consen  121 DKTVRLWD  128 (311)
T ss_pred             CCeEEeeE
Confidence            99999997

>KOG0267|consensus

Probab=99.22  E-value=2.5e-11  Score=73.99  Aligned_cols=80  Identities=23%  Similarity=0.265  Sum_probs=74.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .+..++.+|...|..++|+   |+|.++++++.|..+++||..-++.+..|.+|...+..+.|+|...++++++.|.+++
T Consensus       145 Gc~~~~~s~~~vv~~l~ls---P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  145 GCSHTYKSHTRVVDVLRLS---PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             CceeeecCCcceeEEEeec---CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence            4677888899999999999   7999999999999999999998999999999999999999999988999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       222 f~d  224 (825)
T KOG0267|consen  222 FWD  224 (825)
T ss_pred             eec
Confidence            997

>KOG0299|consensus

Probab=99.22  E-value=1e-10  Score=68.12  Aligned_cols=74  Identities=28%  Similarity=0.457  Sum_probs=69.5

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++|...+.+++.+   ++|.++++++.|..+.+|+.++...+..+.+|.+.|.+++|......+.+++.|.++++|+
T Consensus       199 ~~h~keil~~avS---~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~  272 (479)
T KOG0299|consen  199 KGHVKEILTLAVS---SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS  272 (479)
T ss_pred             ccccceeEEEEEc---CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence            3788889999999   8999999999999999999999999999999999999999998888899999999999995

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.22  E-value=5.7e-11  Score=47.98  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=35.3

Q ss_pred             CEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          51 DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        51 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +.+..+.+|.+.|.+++|+|++.++++++.|+.+++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35678899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0640|consensus

Probab=99.21  E-value=5.6e-11  Score=66.97  Aligned_cols=74  Identities=23%  Similarity=0.323  Sum_probs=65.4

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CC-CeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HK-GCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..|++.|.++.++   +.+...+++++||.|++||--+++++..+.. |. ..|.+..|..++.++++.+.|..+++|.
T Consensus       258 ~qht~ai~~V~Ys---~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  258 DQHTGAITQVRYS---STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             cccccceeEEEec---CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence            3588999999999   8999999999999999999877888777754 43 5788889999999999999999999994

>KOG0270|consensus

Probab=99.21  E-value=2.3e-11  Score=70.51  Aligned_cols=76  Identities=25%  Similarity=0.202  Sum_probs=66.2

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCeEEEcC
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAKALK   88 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~i~~~~   88 (88)
                      -.+|+..|..+.|+.  .....|+|++.|+++.+||+.++++-..+..|.+.|.++.|+|. ...+++++.|+++.+.|
T Consensus       239 ~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNR--NFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             cccchHHHHHHHhcc--ccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence            346899999999984  44578999999999999999999998888889999999999985 66778999999998865

>KOG4283|consensus

Probab=99.21  E-value=2.3e-10  Score=64.18  Aligned_cols=73  Identities=21%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCeEEEcC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQAKALK   88 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~i~~~~   88 (88)
                      +.|..-+++|+.....+++.+..+..|+++|+.+|...+.+.+|...|.++.|+|...+++ +++.|+.+|+||
T Consensus       144 ~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWD  217 (397)
T KOG4283|consen  144 GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWD  217 (397)
T ss_pred             ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEE
Confidence            4566667776545567888888899999999999999999999999999999999988764 899999999997

>KOG0308|consensus

Probab=99.20  E-value=4.5e-10  Score=68.03  Aligned_cols=80  Identities=25%  Similarity=0.279  Sum_probs=72.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ..+.+..++||+..|.++..+   .+|..+++++.|+.|++|++...+++..+..|...++++..++.-..+.+++.|+.
T Consensus       202 t~~kimkLrGHTdNVr~ll~~---dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  202 TCKKIMKLRGHTDNVRVLLVN---DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             cccceeeeeccccceEEEEEc---CCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence            445677788999999999999   89999999999999999999988899999999999999999999889999999987


Q ss_pred             EEE
Q psy6444          84 AKA   86 (88)
Q Consensus        84 i~~   86 (88)
                      |..
T Consensus       279 i~~  281 (735)
T KOG0308|consen  279 IYR  281 (735)
T ss_pred             EEe
Confidence            753

>KOG2110|consensus

Probab=99.20  E-value=1.3e-09  Score=62.39  Aligned_cols=80  Identities=20%  Similarity=0.240  Sum_probs=68.5

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCC-EEEEECCCCCEEEEecCC--CCeEEEEEECCCCCeEEEecCC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGK-PMLRQGDTGDWIGTFEGH--KGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      -+++..+..|.+++.+++|+   ++|..+++++..|+ |++|.+.++..+..|...  .-.|..++|++++.++.+.+..
T Consensus       163 l~~v~~I~aH~~~lAalafs---~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T  239 (391)
T KOG2110|consen  163 LQPVNTINAHKGPLAALAFS---PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT  239 (391)
T ss_pred             ceeeeEEEecCCceeEEEEC---CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence            35677888999999999999   89999999999987 679999999988887543  3466899999999999888888


Q ss_pred             CeEEEc
Q psy6444          82 FQAKAL   87 (88)
Q Consensus        82 ~~i~~~   87 (88)
                      ++|-+|
T Consensus       240 eTVHiF  245 (391)
T KOG2110|consen  240 ETVHIF  245 (391)
T ss_pred             CeEEEE
Confidence            888775

>KOG0646|consensus

Probab=99.19  E-value=1.8e-10  Score=67.19  Aligned_cols=83  Identities=19%  Similarity=0.239  Sum_probs=70.0

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC---------CCCEEEEecCCCCeEEEEEECCC--
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD---------TGDWIGTFEGHKGCVWGVDINKD--   71 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~--   71 (88)
                      +.|..+..+.+|-..|.|+.|+   .++..++++++|+.|.+|++.         +...++.+..|.-.|..+...+.  
T Consensus       111 ssG~LL~v~~aHYQ~ITcL~fs---~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~  187 (476)
T KOG0646|consen  111 SSGILLNVLSAHYQSITCLKFS---DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT  187 (476)
T ss_pred             ccccHHHHHHhhccceeEEEEe---CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc
Confidence            4667777888899999999999   899999999999999999653         23467888999999988776553  


Q ss_pred             CCeEEEecCCCeEEEcC
Q psy6444          72 ASKAASGAADFQAKALK   88 (88)
Q Consensus        72 ~~~~~~~~~d~~i~~~~   88 (88)
                      ...+++++.|.++++||
T Consensus       188 ~~rl~TaS~D~t~k~wd  204 (476)
T KOG0646|consen  188 NARLYTASEDRTIKLWD  204 (476)
T ss_pred             cceEEEecCCceEEEEE
Confidence            44788999999999997

>KOG2096|consensus

Probab=99.19  E-value=1.4e-10  Score=65.56  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=64.9

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC---C-----CCEEEEecCCCCeEEEEEECCCCCeEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD---T-----GDWIGTFEGHKGCVWGVDINKDASKAA   76 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~   76 (88)
                      |+.+.+...........+.+   |+|+++++++....+++|.+.   .     -..+..+++|...|...+|+++...++
T Consensus       218 Gq~L~~idtnq~~n~~aavS---P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  218 GQLLQSIDTNQSSNYDAAVS---PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             CceeeeeccccccccceeeC---CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence            34444444444455566778   899999999998999999753   1     235678899999999999999999999


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      +.+.||+.|+||
T Consensus       295 tvSkDG~wriwd  306 (420)
T KOG2096|consen  295 TVSKDGKWRIWD  306 (420)
T ss_pred             EEecCCcEEEee
Confidence            999999999997

>KOG1009|consensus

Probab=99.19  E-value=2.1e-10  Score=66.13  Aligned_cols=79  Identities=24%  Similarity=0.314  Sum_probs=66.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC--------C------CC--EEEEecCCCCeEEEEEECC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD--------T------GD--WIGTFEGHKGCVWGVDINK   70 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~--~~~~~~~~~~~i~~~~~~~   70 (88)
                      .+..|..|+..|..++|+   ++|+.+++++.++.+.+|...        .      ..  ....+.+|...+..++|++
T Consensus        57 y~s~Ls~H~~aVN~vRf~---p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~  133 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFS---PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP  133 (434)
T ss_pred             EeecccCCcceeEEEEEc---CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence            456778899999999999   899999999999999999654        1      11  1234567889999999999


Q ss_pred             CCCeEEEecCCCeEEEcC
Q psy6444          71 DASKAASGAADFQAKALK   88 (88)
Q Consensus        71 ~~~~~~~~~~d~~i~~~~   88 (88)
                      ++..+++++.|.++++||
T Consensus       134 d~~~l~s~s~dns~~l~D  151 (434)
T KOG1009|consen  134 DSNFLVSGSVDNSVRLWD  151 (434)
T ss_pred             CCceeeeeeccceEEEEE
Confidence            999999999999999997

>KOG1063|consensus

Probab=99.18  E-value=1.7e-10  Score=70.17  Aligned_cols=79  Identities=23%  Similarity=0.330  Sum_probs=68.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      +.+..+.+|.-.|..++|+   +++.+|++.+.|....+|......    .....+.|.+-|+..+|+|+..++++++.|
T Consensus       563 ~~~~~L~~HsLTVT~l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD  639 (764)
T KOG1063|consen  563 LQVQELEGHSLTVTRLAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD  639 (764)
T ss_pred             hhhheecccceEEEEEEEC---CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence            4556789999999999999   899999999999999999875432    223356799999999999999999999999


Q ss_pred             CeEEEc
Q psy6444          82 FQAKAL   87 (88)
Q Consensus        82 ~~i~~~   87 (88)
                      .++.+|
T Consensus       640 K~VkVW  645 (764)
T KOG1063|consen  640 KKVKVW  645 (764)
T ss_pred             ceEEEE
Confidence            999999

>KOG0269|consensus

Probab=99.18  E-value=6.6e-11  Score=72.52  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=71.3

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~   83 (88)
                      .+.+..+..|...+.+++|++  .....+++|+.|+.|++||++.......+.+....|+.+.|+|. +..++++...|.
T Consensus       123 nk~l~~f~EH~Rs~~~ldfh~--tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~  200 (839)
T KOG0269|consen  123 NKLLTVFNEHERSANKLDFHS--TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY  200 (839)
T ss_pred             chhhhHhhhhccceeeeeecc--CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence            345567888999999999996  66789999999999999999988877888888889999999995 667788888899


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       201 lqlWD  205 (839)
T KOG0269|consen  201 LQLWD  205 (839)
T ss_pred             EEEee
Confidence            99997

>KOG1007|consensus

Probab=99.17  E-value=1.8e-10  Score=64.37  Aligned_cols=74  Identities=22%  Similarity=0.335  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCe-EEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASK-AASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~i~~~~   88 (88)
                      .|...|..++|+|  .....+++++.|+.+++||.++.+ .+..+.+|.-.+++++|+|...+ +++++.|..+.+|.
T Consensus       212 AHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  212 AHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             hhcceeeeccCCC--CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence            4667799999995  445678899999999999998654 77889999999999999997654 55899999988763

>KOG0647|consensus

Probab=99.17  E-value=1.5e-10  Score=64.72  Aligned_cols=72  Identities=28%  Similarity=0.334  Sum_probs=60.6

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-CEE-EEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-DWI-GTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...|.+++|+|  .....++.++.|+.|++|+++.. ..+ .....+.+.+..++|+.+|..+++++.|+.+++||
T Consensus        27 ~DsIS~l~FSP--~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   27 EDSISALAFSP--QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             ccchheeEecc--ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            45689999995  46677779999999999999863 322 44566889999999999999999999999999997

>KOG0322|consensus

Probab=99.17  E-value=8.2e-11  Score=64.89  Aligned_cols=69  Identities=19%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+..++.-   ++++.+++++.|+.+++|.-++...+..++.|...|.+++|+|+...++.+++|.+|-+|+
T Consensus       253 Gv~gvrIR---pD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  253 GVSGVRIR---PDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             CccceEEc---cCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence            35567777   7999999999999999999999999999999999999999999999999999999999995

>KOG0310|consensus

Probab=99.15  E-value=1.1e-09  Score=64.29  Aligned_cols=77  Identities=22%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-CEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ...+.+|+..|.+.+++|  .+.-.+++|+.||.|++||.+.. ..+..+. |.-.|-.+.+-|.|.++++++ ...+++
T Consensus       146 ~~~l~~htDYVR~g~~~~--~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkV  221 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISP--ANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKV  221 (487)
T ss_pred             EEEecCCcceeEeecccc--CCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence            447889999999999997  66778999999999999999866 4445554 778888999999989888765 467999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       222 WD  223 (487)
T KOG0310|consen  222 WD  223 (487)
T ss_pred             EE
Confidence            97

>KOG0650|consensus

Probab=99.15  E-value=1.5e-09  Score=65.53  Aligned_cols=64  Identities=25%  Similarity=0.310  Sum_probs=56.6

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS   73 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   73 (88)
                      .....+.||++.|.+++..   +.|+++++|+.||++++|.+.+++++..+. ..+.|.+++|+|.+.
T Consensus       391 ~~~lvyrGHtg~Vr~iSvd---p~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~  454 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVD---PSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD  454 (733)
T ss_pred             eeeeeEeccCCeEEEEEec---CCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC
Confidence            3456788999999999999   799999999999999999999999988877 346899999999765

>KOG0772|consensus

Probab=99.14  E-value=1.5e-10  Score=68.65  Aligned_cols=77  Identities=14%  Similarity=0.175  Sum_probs=62.0

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEec-----CCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFE-----GHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ..+||...+.|-.|+|  .+.+.+.+++.|+++++|++.+.+ ....++     +..-.+...+|++++.+|+.++.||+
T Consensus       263 nTKGHia~lt~g~whP--~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS  340 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHP--DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS  340 (641)
T ss_pred             ccCCceeeeecccccc--CcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc
Confidence            4578999999999998  777899999999999999997654 222222     12224467799999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |.+|+
T Consensus       341 IQ~W~  345 (641)
T KOG0772|consen  341 IQIWD  345 (641)
T ss_pred             eeeee
Confidence            99996

>KOG2445|consensus

Probab=99.13  E-value=7.4e-10  Score=62.26  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=64.7

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCC--------------------CEEEEecCCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTG--------------------DWIGTFEGHKGCVWG   65 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~i~~   65 (88)
                      .+..|.+|+.+|.+++|+|+..-. ..++.+++|| |.+|.+...                    ..+..+..|.+.++.
T Consensus       215 kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr  293 (361)
T KOG2445|consen  215 KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR  293 (361)
T ss_pred             eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence            456677899999999999732222 4688899999 999977520                    123456789999999


Q ss_pred             EEECCCCCeEEEecCCCeEEEcC
Q psy6444          66 VDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        66 ~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++|+-.|..+++.+.||.+|+|.
T Consensus       294 v~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  294 VRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             EEEeeeeeEEeecCCCceeeehh
Confidence            99999999999999999999994

>KOG0300|consensus

Probab=99.13  E-value=1.9e-10  Score=65.21  Aligned_cols=78  Identities=18%  Similarity=0.254  Sum_probs=70.7

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      .++-+.||+..|..++..   .....+.+++.|..-++|.+.++.++..+.+|.+.+.++.|++.+.++++++.|++--+
T Consensus       140 lvre~~GHkDGiW~Vaa~---~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAAD---STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             ehhhhcccccceeeehhh---cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            455678899999999887   56678889999999999999999999999999999999999999999999999998777


Q ss_pred             c
Q psy6444          87 L   87 (88)
Q Consensus        87 ~   87 (88)
                      |
T Consensus       217 W  217 (481)
T KOG0300|consen  217 W  217 (481)
T ss_pred             H
Confidence            7

>KOG0643|consensus

Probab=99.12  E-value=1e-09  Score=60.79  Aligned_cols=81  Identities=17%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE-EEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ..|...+..+...+....|.   +.++.++++..+|.|..||+.++.. +..-..|...|..++++++..++++++.|.+
T Consensus       137 ~ep~~kI~t~~skit~a~Wg---~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt  213 (327)
T KOG0643|consen  137 EEPYLKIPTPDSKITSALWG---PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT  213 (327)
T ss_pred             cCceEEecCCccceeeeeec---ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc
Confidence            44566777777888899999   7899999999999999999998764 4555678899999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      -++||
T Consensus       214 akl~D  218 (327)
T KOG0643|consen  214 AKLVD  218 (327)
T ss_pred             ceeee
Confidence            88886

>KOG2445|consensus

Probab=99.11  E-value=2.3e-09  Score=60.37  Aligned_cols=74  Identities=16%  Similarity=0.267  Sum_probs=62.6

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC--C--EEEEecCCCCeEEEEEECC--CCCeEEEecCCCeEE
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG--D--WIGTFEGHKGCVWGVDINK--DASKAASGAADFQAK   85 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d~~i~   85 (88)
                      .+|..-+.++.|.   .-|+.+++++.|+.+++|+....  .  +......|.+.|+.+.|.+  =|+.+++++.|+++.
T Consensus        10 s~h~DlihdVs~D---~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFD---FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeec---ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            3688889999999   79999999999999999996432  2  3456678999999999965  378889999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|.
T Consensus        87 iWE   89 (361)
T KOG2445|consen   87 IWE   89 (361)
T ss_pred             eee
Confidence            994

>KOG0641|consensus

Probab=99.09  E-value=2.8e-09  Score=58.19  Aligned_cols=70  Identities=24%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..|..++..   |.|++++++-.|....+||++-++.++.+..|...|++++|+|...++++++.|..|++-|
T Consensus       232 savaav~vd---psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltd  301 (350)
T KOG0641|consen  232 SAVAAVAVD---PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD  301 (350)
T ss_pred             ceeEEEEEC---CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence            467888888   7999999999999999999999999999999999999999999999999999999998743

>KOG0288|consensus

Probab=99.09  E-value=9.6e-10  Score=63.68  Aligned_cols=68  Identities=15%  Similarity=0.145  Sum_probs=60.6

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCC--CeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK--GCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..+.|+   |++.++++|+.|+.+.+|++.+++....+....  ..|.++.|+|.|..+++++.+..+.+|.
T Consensus       390 wtrvvfS---pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  390 WTRVVFS---PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             cceeEEC---CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            6678899   799999999999999999999999887776644  3699999999999999999999999994

>KOG0301|consensus

Probab=99.07  E-value=4.3e-10  Score=68.41  Aligned_cols=76  Identities=25%  Similarity=0.376  Sum_probs=41.5

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +....+.+|+..|.++..-   +++ .+++|+.|+.|++|.-  +..+..+.+|...|+++++-+++. +++++.|+.|+
T Consensus       131 ~l~~~l~gH~asVWAv~~l---~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir  203 (745)
T KOG0301|consen  131 ELVYSLQGHTASVWAVASL---PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIR  203 (745)
T ss_pred             hhhcccCCcchheeeeeec---CCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEE
Confidence            3344455565555555554   222 5555666666666543  555566666666666665554333 44556666666


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      .|+
T Consensus       204 ~w~  206 (745)
T KOG0301|consen  204 LWD  206 (745)
T ss_pred             EEe
Confidence            664

>KOG0268|consensus

Probab=99.04  E-value=2.1e-10  Score=65.58  Aligned_cols=76  Identities=22%  Similarity=0.215  Sum_probs=66.8

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      +-.|.||...|.+++=+|  ..-..+++|+.||.+++|++....++..++.|.+.|..+++..  .-+++++.|.+++.|
T Consensus        59 v~~L~gHrdGV~~lakhp--~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHP--NKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW  134 (433)
T ss_pred             hhhccccccccchhhcCc--chhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence            456789999999999985  4447899999999999999998888999999999999998876  567799999999988

>KOG0974|consensus

Probab=99.04  E-value=4e-09  Score=66.44  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=67.1

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-EecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+.+|.+.+..+.++   .+|..+++.+.|..+++|++.+.+... ..-+|..+++...+.+.  .+++++.|.++++|+
T Consensus       170 ~l~GHeG~iF~i~~s---~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~  244 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTS---LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG  244 (967)
T ss_pred             eecccCCceEEEEEc---cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence            678999999999999   899999999999999999999877655 56679999999999987  889999999999993

>KOG1332|consensus

Probab=99.01  E-value=1.6e-09  Score=59.42  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=65.0

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC---CEEEEecCCCCeEEEEEECC--CCCeEEEecCCCeEE
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG---DWIGTFEGHKGCVWGVDINK--DASKAASGAADFQAK   85 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d~~i~   85 (88)
                      -..|...|..+...   .-|..+++++.|+.|++|.+.++   ..+..+.+|.+.++.++|.+  -|..+++++.|+.+.
T Consensus         7 dt~H~D~IHda~lD---yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLD---YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhHhhhh---hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            34588888888877   68999999999999999998764   36788999999999999966  688999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|.
T Consensus        84 iWk   86 (299)
T KOG1332|consen   84 IWK   86 (299)
T ss_pred             EEe
Confidence            984

>KOG0289|consensus

Probab=99.01  E-value=9.7e-09  Score=60.09  Aligned_cols=76  Identities=20%  Similarity=0.252  Sum_probs=65.6

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC--CCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ....|.++|..+..+   +.|++++++++|+...+.++.++..+.....  ..-.+.+.+|+|||..+.++..|+.+++|
T Consensus       298 ~~~~h~~~V~~ls~h---~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw  374 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLH---PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW  374 (506)
T ss_pred             ccccccccceeeeec---cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence            455688999999999   7999999999999999999998887655543  23356889999999999999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       375 d  375 (506)
T KOG0289|consen  375 D  375 (506)
T ss_pred             E
Confidence            7

>KOG1407|consensus

Probab=99.01  E-value=5.2e-09  Score=57.89  Aligned_cols=76  Identities=17%  Similarity=0.191  Sum_probs=63.5

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..++|++.|..+.|+|  +..+.+++++.|+.+++||+..++++.......+. ..+.|+|++.+++.+..|..|...|
T Consensus        59 ~~~gh~~svdql~w~~--~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id  134 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDP--KHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFID  134 (313)
T ss_pred             cccCCCcchhhheeCC--CCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEE
Confidence            4567999999999997  77899999999999999999999988877755444 4578999999999999887776543

>KOG0641|consensus

Probab=99.00  E-value=1.4e-08  Score=55.57  Aligned_cols=81  Identities=23%  Similarity=0.248  Sum_probs=65.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC--C-----CCeEEEEEECCCCCeEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG--H-----KGCVWGVDINKDASKAA   76 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~~~   76 (88)
                      .++....+.+|++.+..+ ++   =++-.+++++.|+.+++||++....+..+..  |     ...+..++..|.|++++
T Consensus       172 ~g~~~~a~sghtghilal-ys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  172 RGQGFHALSGHTGHILAL-YS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             CCCcceeecCCcccEEEE-EE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence            567788899999998775 34   4588999999999999999987766665532  1     26788999999999999


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      ++-.|.++.+||
T Consensus       248 sg~~dssc~lyd  259 (350)
T KOG0641|consen  248 SGHADSSCMLYD  259 (350)
T ss_pred             eccCCCceEEEE
Confidence            999998887765

>KOG0639|consensus

Probab=98.99  E-value=8.2e-10  Score=65.69  Aligned_cols=82  Identities=17%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEE---------------------------
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGT---------------------------   55 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------   55 (88)
                      .+...++.|+||+..+.||+.+   .+|..+-+|+.|..++.||++.++.+..                           
T Consensus       539 hnq~~VrqfqGhtDGascIdis---~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~  615 (705)
T KOG0639|consen  539 HNQTLVRQFQGHTDGASCIDIS---KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN  615 (705)
T ss_pred             ccceeeecccCCCCCceeEEec---CCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc
Confidence            3567889999999999999999   8999999999999999999875532211                           


Q ss_pred             -------------ecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          56 -------------FEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        56 -------------~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                                   +--|..+|.++.|.+.|.++++.++|..+..|
T Consensus       616 vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnaw  660 (705)
T KOG0639|consen  616 VEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  660 (705)
T ss_pred             EEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhc
Confidence                         11357889999999999999999999988877

>KOG0288|consensus

Probab=98.99  E-value=3.4e-10  Score=65.49  Aligned_cols=79  Identities=23%  Similarity=0.245  Sum_probs=71.3

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ...+|.|..+.+..+.|.   .++..+++++.|+.+.+|++........+.+|...+.++.|......+++++.|.+++.
T Consensus       211 ~~~tLaGs~g~it~~d~d---~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~  287 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFD---SDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL  287 (459)
T ss_pred             hhhhhhccCCCcceeeec---CCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhh
Confidence            455677888899999999   78999999999999999999988888999999999999999887777889999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       288 WD  289 (459)
T KOG0288|consen  288 WD  289 (459)
T ss_pred             hh
Confidence            97

>KOG1408|consensus

Probab=98.98  E-value=6.1e-09  Score=64.38  Aligned_cols=83  Identities=20%  Similarity=0.297  Sum_probs=74.9

Q ss_pred             CccceeEEecC---CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444           3 SIRQIPLTCSG---HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus         3 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      ..++..+.+++   |.+....+...   |.|.++++.+.|+.+.++|+.+++++..+.+|...|+.+.|.+|-.++++.+
T Consensus       626 ~sgKq~k~FKgs~~~eG~lIKv~lD---PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs  702 (1080)
T KOG1408|consen  626 ESGKQVKSFKGSRDHEGDLIKVILD---PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS  702 (1080)
T ss_pred             cccceeeeecccccCCCceEEEEEC---CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec
Confidence            36778888887   44667788888   7999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEcC
Q psy6444          80 ADFQAKALK   88 (88)
Q Consensus        80 ~d~~i~~~~   88 (88)
                      .|+-|.+|.
T Consensus       703 gDgCIFvW~  711 (1080)
T KOG1408|consen  703 GDGCIFVWK  711 (1080)
T ss_pred             CCceEEEEE
Confidence            999999994

>KOG0644|consensus

Probab=98.98  E-value=1.6e-10  Score=71.85  Aligned_cols=78  Identities=21%  Similarity=0.316  Sum_probs=69.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +...+..+.||.+.+..++.+   .+.-.+++++.|..|++|.++.+..+..+.+|.+.|++++|+|..    +.+.|++
T Consensus       221 t~~~lAs~rGhs~ditdlavs---~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt  293 (1113)
T KOG0644|consen  221 TARCLASCRGHSGDITDLAVS---SNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGT  293 (1113)
T ss_pred             chhhhccCCCCccccchhccc---hhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCc
Confidence            455677889999999999988   677788999999999999999999999999999999999999964    6789999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       294 ~~~wd  298 (1113)
T KOG0644|consen  294 CRIWD  298 (1113)
T ss_pred             eEecc
Confidence            99997

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.98  E-value=3e-08  Score=53.28  Aligned_cols=69  Identities=25%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecC------CCeEE
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA------DFQAK   85 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------d~~i~   85 (88)
                      +..+..+.|+   |+|+.++.++.+   |.+.+||..+...+.....  ..+..++|+|+|++++++..      |..++
T Consensus       100 ~~~~n~i~ws---P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~  174 (194)
T PF08662_consen  100 TQPRNTISWS---PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFK  174 (194)
T ss_pred             CCCceEEEEC---CCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEE
Confidence            4566789999   799999987654   5699999987777666543  34688999999999997653      55666


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|+
T Consensus       175 Iw~  177 (194)
T PF08662_consen  175 IWS  177 (194)
T ss_pred             EEE
Confidence            663

>KOG0321|consensus

Probab=98.97  E-value=1.6e-09  Score=65.58  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=66.5

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEE--ecCCCCeEEEEEECCCCC-eEEEecCCCeEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGT--FEGHKGCVWGVDINKDAS-KAASGAADFQAK   85 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~   85 (88)
                      +-...|...|.++.|.   +....|++++-|..+++||+..+..+..  +.+|.+.+..++|.+... .+.+++.|+.+.
T Consensus        94 k~~~aH~nAifDl~wa---pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il  170 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWA---PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL  170 (720)
T ss_pred             cccccccceeEeeccC---CCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence            3445699999999999   6667889999999999999998887766  899999999999999644 667899999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       171 lWD  173 (720)
T KOG0321|consen  171 LWD  173 (720)
T ss_pred             EEE
Confidence            997

>KOG1063|consensus

Probab=98.97  E-value=3.2e-09  Score=64.81  Aligned_cols=78  Identities=24%  Similarity=0.207  Sum_probs=67.7

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC-----CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDG-----KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      +..|.||.-.|.+++.+   ++|+.++++++..     .|.+|+..+-.....+.+|.-.|..++|+|+++++++.+.|.
T Consensus       518 v~KLYGHGyEv~~l~~s---~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAIS---PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             hHHhccCceeEEEEEec---CCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence            45678999999999999   7999999988754     477888876566677899999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      +..+|.
T Consensus       595 t~sl~~  600 (764)
T KOG1063|consen  595 TVSLYE  600 (764)
T ss_pred             eEEeee
Confidence            998874

>KOG2919|consensus

Probab=98.97  E-value=5.6e-09  Score=59.30  Aligned_cols=82  Identities=23%  Similarity=0.202  Sum_probs=63.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCC-EEEEecCCC---CeEEEEEECCCCCeEEEe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACK-DGKPMLRQGDTGD-WIGTFEGHK---GCVWGVDINKDASKAASG   78 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~---~~i~~~~~~~~~~~~~~~   78 (88)
                      ++.++..+-+|.+.|..+.|+   ++|+.++++.. +-.|..||++... .+..+..|.   +.-.-.+..|+++.++++
T Consensus       239 ~~~pl~llggh~gGvThL~~~---edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG  315 (406)
T KOG2919|consen  239 GRRPLQLLGGHGGGVTHLQWC---EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG  315 (406)
T ss_pred             CCCceeeecccCCCeeeEEec---cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc
Confidence            456788888999999999999   89999888665 5679999998654 344444443   333344678899999999


Q ss_pred             cCCCeEEEcC
Q psy6444          79 AADFQAKALK   88 (88)
Q Consensus        79 ~~d~~i~~~~   88 (88)
                      +.||.|++||
T Consensus       316 ~tdG~V~vwd  325 (406)
T KOG2919|consen  316 DTDGSVRVWD  325 (406)
T ss_pred             CCCccEEEEe
Confidence            9999999997

>KOG2048|consensus

Probab=98.96  E-value=2.5e-08  Score=60.79  Aligned_cols=83  Identities=14%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE--EecCCCCeEEEEEECCCCCeEEEecC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG--TFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      .+.+++..+....+.+..++.+   +.+..++.++.||.+.+++...+....  .+...++++.+++|++++..+++|+.
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~---p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAIN---PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeC---CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence            3566777777778899999999   678888999999988788877665443  34556789999999999999999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.|++||
T Consensus       175 Dg~Iriwd  182 (691)
T KOG2048|consen  175 DGVIRIWD  182 (691)
T ss_pred             CceEEEEE
Confidence            99999997

>KOG0299|consensus

Probab=98.95  E-value=2.1e-09  Score=62.88  Aligned_cols=82  Identities=24%  Similarity=0.250  Sum_probs=68.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +..+++++.+|.+.|.+++|-   ..-..+++++.|..+++|+++.-..+..+.+|...|..+......+.+-.++.|.+
T Consensus       233 t~ehv~~~~ghr~~V~~L~fr---~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT  309 (479)
T KOG0299|consen  233 TLEHVKVFKGHRGAVSSLAFR---KGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRT  309 (479)
T ss_pred             ccchhhcccccccceeeeeee---cCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccce
Confidence            456778899999999999997   55678999999999999999876677788899999998877666666656669999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++|+
T Consensus       310 ~rlwK  314 (479)
T KOG0299|consen  310 VRLWK  314 (479)
T ss_pred             eEEEe
Confidence            99985

>KOG1274|consensus

Probab=98.93  E-value=1.6e-08  Score=63.34  Aligned_cols=71  Identities=21%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +-++.+++++   .+|.+++.|+.|..|++-+.........+.+|...|.++.++|++.++++.+-||.+++||
T Consensus        96 tlp~r~~~v~---g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   96 TLPIRDLAVS---GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             eccceEEEEe---cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            4577889999   8999999999999999999988888899999999999999999999999999999999996

>KOG1524|consensus

Probab=98.93  E-value=2.6e-09  Score=64.03  Aligned_cols=81  Identities=22%  Similarity=0.302  Sum_probs=65.1

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC---------CCCE-----------------------
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD---------TGDW-----------------------   52 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-----------------------   52 (88)
                      +...+....|.+.+.+-+|+   ++|.-+++++.||.+++|.-.         .+..                       
T Consensus        94 ~rVE~sv~AH~~A~~~gRW~---~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~I  170 (737)
T KOG1524|consen   94 ARVERSISAHAAAISSGRWS---PDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISI  170 (737)
T ss_pred             chhhhhhhhhhhhhhhcccC---CCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEE
Confidence            34455667788999999999   799999999999999999532         1111                       


Q ss_pred             --------EEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          53 --------IGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        53 --------~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                              +-....|.+.|.+++|++.+..++++++|...++||
T Consensus       171 KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD  214 (737)
T KOG1524|consen  171 KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD  214 (737)
T ss_pred             eecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeec
Confidence                    112357899999999999999999999999999998

>KOG1036|consensus

Probab=98.93  E-value=2.2e-08  Score=56.31  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=62.7

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      -.|.+++.+++|.    +...+++++-|+.++.+|+..+. ...+..|...+.++..++....+++++.|++|++||
T Consensus        51 ~~~~~plL~c~F~----d~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD  122 (323)
T KOG1036|consen   51 FKHGAPLLDCAFA----DESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD  122 (323)
T ss_pred             eecCCceeeeecc----CCceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEe
Confidence            3478999999996    57788999999999999997655 466677999999999999888999999999999997

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.92  E-value=5e-08  Score=52.44  Aligned_cols=68  Identities=15%  Similarity=0.061  Sum_probs=51.5

Q ss_pred             CCCEEEEEEEecCCCCcEEEE--EeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC---CeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLIS--ACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD---FQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d---~~i~~~~   88 (88)
                      .++|.+++|+   |+|+.++.  +..+..+.+|++. ...+..+.  ...+..+.|+|+|++++.++.+   |.+.+||
T Consensus        59 ~~~I~~~~Ws---P~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   59 EGPIHDVAWS---PNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCceEEEEEC---cCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence            4579999999   68876543  3345689999996 66666664  3566789999999999987643   5699997

>KOG1445|consensus

Probab=98.92  E-value=9.9e-09  Score=62.85  Aligned_cols=73  Identities=19%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +....|.++.|+|   ..+.+......+.+.+||+.+++.+..+.+|...|.+..|+.||.+++++++|..|++||
T Consensus       126 ~~~~~vE~l~fHp---TaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifD  198 (1012)
T KOG1445|consen  126 GGNVIVECLRFHP---TADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFD  198 (1012)
T ss_pred             CCceEEEEeeccc---CcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeC
Confidence            3445688999994   555555555678999999999999999999999999999999999999999999999997

>KOG0771|consensus

Probab=98.91  E-value=4.1e-09  Score=60.93  Aligned_cols=66  Identities=24%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             EEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          19 VHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..++|+   .+|..+++++.||.+++|+.++-..+.....|.+.|..++|+||+..+++.+.| ..+||+
T Consensus       148 k~vaf~---~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFN---GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEc---CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEE
Confidence            457788   899999999999999999977666666677789999999999999999999998 899996

>KOG0290|consensus

Probab=98.89  E-value=5.3e-08  Score=54.80  Aligned_cols=79  Identities=18%  Similarity=0.218  Sum_probs=61.8

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCC----------------------------------
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGD----------------------------------   51 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------------------   51 (88)
                      ....|-.|...|.+++|.   ..+ +.+++.+.||++++||++.-+                                  
T Consensus       188 vkTQLIAHDKEV~DIaf~---~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d  264 (364)
T KOG0290|consen  188 VKTQLIAHDKEVYDIAFL---KGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD  264 (364)
T ss_pred             eeeEEEecCcceeEEEec---cCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence            455667799999999998   444 789999999999999876311                                  


Q ss_pred             --------------EEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEcC
Q psy6444          52 --------------WIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKALK   88 (88)
Q Consensus        52 --------------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~~   88 (88)
                                    .+..+.+|.+.|.+++|.|... .+.+++.|....+||
T Consensus       265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD  316 (364)
T KOG0290|consen  265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD  316 (364)
T ss_pred             CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence                          0112247899999999999755 666888999999997

>KOG1538|consensus

Probab=98.88  E-value=3.6e-09  Score=65.01  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             CCccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC
Q psy6444           2 ASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD   48 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (88)
                      +.+|..++++++|+..|.+++|+   .+|+.+++|+.|+.+.+|...
T Consensus        40 ~ndG~llqtLKgHKDtVycVAys---~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   40 TSDGTLLQPLKGHKDTVYCVAYA---KDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             CCCcccccccccccceEEEEEEc---cCCceeccCCCceeEEEeccc
Confidence            34678899999999999999999   899999999999999999754

>KOG4328|consensus

Probab=98.88  E-value=9.3e-09  Score=60.34  Aligned_cols=82  Identities=12%  Similarity=0.102  Sum_probs=65.5

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC--CCE--EEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT--GDW--IGTFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      +.....++-|...|..++++|  -+-..+++++.|+..+|||.+.  ++.  +-....|...|.+..|+|.+-.+++.+.
T Consensus       312 ~s~~~~~~lh~kKI~sv~~NP--~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  312 GSEYENLRLHKKKITSVALNP--VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             CccchhhhhhhcccceeecCC--CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence            333455666888999999996  5557899999999999999874  222  2334458899999999998888999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |..||+||
T Consensus       390 D~~IRv~d  397 (498)
T KOG4328|consen  390 DNEIRVFD  397 (498)
T ss_pred             CCceEEee
Confidence            99999997

>KOG0307|consensus

Probab=98.85  E-value=5.3e-09  Score=66.43  Aligned_cols=81  Identities=17%  Similarity=0.253  Sum_probs=71.8

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~   83 (88)
                      ..+++++++|...|.++.|++  .+..+++++++|+.+.+|+..+++.+..+....+.++.+.|+|... .++.++.||.
T Consensus       243 ssP~k~~~~H~~GilslsWc~--~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk  320 (1049)
T KOG0307|consen  243 SSPLKILEGHQRGILSLSWCP--QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK  320 (1049)
T ss_pred             CCchhhhcccccceeeeccCC--CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence            457788899999999999996  6668999999999999999999999999998889999999999655 7778889998


Q ss_pred             EEEc
Q psy6444          84 AKAL   87 (88)
Q Consensus        84 i~~~   87 (88)
                      |-++
T Consensus       321 I~I~  324 (1049)
T KOG0307|consen  321 ISIY  324 (1049)
T ss_pred             eeee
Confidence            8775

>KOG0649|consensus

Probab=98.85  E-value=4.6e-08  Score=53.97  Aligned_cols=68  Identities=19%  Similarity=0.174  Sum_probs=55.5

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      |.+.-..   |..+-++.++-|+.+..||+.+++.-+.+.+|..-+.++.......+++++++||++|+||
T Consensus       117 INam~ld---P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd  184 (325)
T KOG0649|consen  117 INAMWLD---PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWD  184 (325)
T ss_pred             cceeEec---cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEe
Confidence            5566666   4454455555788999999999999899999999999998755666788999999999997

>KOG0642|consensus

Probab=98.83  E-value=1.5e-08  Score=60.72  Aligned_cols=79  Identities=29%  Similarity=0.306  Sum_probs=68.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC--------CCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT--------GDWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      +..++..|...+....|+   +....+++++.++.+.+|.++.        -+.+..+.+|.+.|.++++...+.+..++
T Consensus       286 ik~tl~s~~d~ir~l~~~---~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFH---PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             eeeeeecchhhhhhhhcC---CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence            445778888889999998   6778999999999999998832        23678899999999999999999999999


Q ss_pred             cCCCeEEEcC
Q psy6444          79 AADFQAKALK   88 (88)
Q Consensus        79 ~~d~~i~~~~   88 (88)
                      +.|++|+.|+
T Consensus       363 g~Dg~I~~w~  372 (577)
T KOG0642|consen  363 GIDGTIRCWN  372 (577)
T ss_pred             ccCceeeeec
Confidence            9999999994

>KOG2139|consensus

Probab=98.82  E-value=1.1e-07  Score=54.97  Aligned_cols=77  Identities=22%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCC-CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKD-GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      +..-.+| .+|..++|+   ++|..+++++.+ ..+.+||.+.+..+.......+.+.-+.|+||+.++..+.-|+..++
T Consensus       189 vl~~pgh-~pVtsmqwn---~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrl  264 (445)
T KOG2139|consen  189 VLQDPGH-NPVTSMQWN---EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRL  264 (445)
T ss_pred             heeCCCC-ceeeEEEEc---CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeee
Confidence            3444455 789999999   789888877664 56999999887755444445567788999999999999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      |+
T Consensus       265 w~  266 (445)
T KOG2139|consen  265 WQ  266 (445)
T ss_pred             eh
Confidence            94

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.82  E-value=2.8e-07  Score=52.62  Aligned_cols=80  Identities=31%  Similarity=0.395  Sum_probs=68.3

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCe
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACK-DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQ   83 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~   83 (88)
                      .....+..|...+..+.|+   +++..++.++. ++.+.+|+...+..+..+.+|...+..++|+|++. .+++++.|+.
T Consensus       146 ~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  222 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFS---PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT  222 (466)
T ss_pred             eEEEEEecCcccEEEEEEC---CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence            5566778899999999999   78888888875 99999999988788888888999999999999887 5556689999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       223 i~~wd  227 (466)
T COG2319         223 IRLWD  227 (466)
T ss_pred             EEEEE
Confidence            99884

>KOG1272|consensus

Probab=98.81  E-value=2.9e-09  Score=62.68  Aligned_cols=82  Identities=10%  Similarity=0.070  Sum_probs=66.4

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .|+.+..+....+.+....-+|   -.-.+-.|..+|.|.+|.....+.+..+..|.+.|.++++.++|+++++++.|..
T Consensus       240 ~GklVa~~~t~~G~~~vm~qNP---~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~  316 (545)
T KOG1272|consen  240 TGKLVASIRTGAGRTDVMKQNP---YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK  316 (545)
T ss_pred             hhhhhHHHHccCCccchhhcCC---ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc
Confidence            3445555555556666666663   3446677888999999998888888889999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      ++|||
T Consensus       317 ~kIWD  321 (545)
T KOG1272|consen  317 VKIWD  321 (545)
T ss_pred             eeEee
Confidence            99998

>KOG0270|consensus

Probab=98.81  E-value=9.3e-08  Score=56.04  Aligned_cols=85  Identities=15%  Similarity=0.070  Sum_probs=65.4

Q ss_pred             CCccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecC
Q psy6444           2 ASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAA   80 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~   80 (88)
                      +..+++..++..|...|.++.|+|  .....+++|+.|+++.+.|.+........=...+.|-.++|.|... .++++..
T Consensus       273 ~~~g~p~~s~~~~~k~Vq~l~wh~--~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  273 VDTGKPKSSITHHGKKVQTLEWHP--YEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             cCCCCcceehhhcCCceeEEEecC--CCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            457788899999999999999998  7889999999999999999874222111111346788889988655 4457778


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      ||+++-+|
T Consensus       351 dG~v~~~D  358 (463)
T KOG0270|consen  351 DGTVYYFD  358 (463)
T ss_pred             CceEEeee
Confidence            99998765

>KOG1538|consensus

Probab=98.78  E-value=5.3e-08  Score=60.13  Aligned_cols=67  Identities=25%  Similarity=0.396  Sum_probs=58.9

Q ss_pred             CEEEEEEEecCCCCcE-EEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYF-LISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .|..++|.   |+|.. ++.++  ..+.+||...|..++.+++|+..|.+++|+.+|..+++++.|..+.+|+
T Consensus        14 ci~d~afk---PDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~   81 (1081)
T KOG1538|consen   14 CINDIAFK---PDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWT   81 (1081)
T ss_pred             chheeEEC---CCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEec
Confidence            67889999   68854 44443  4688999999999999999999999999999999999999999999995

>KOG0644|consensus

Probab=98.75  E-value=2.1e-09  Score=67.09  Aligned_cols=79  Identities=16%  Similarity=0.279  Sum_probs=72.2

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      .++.+.+|..+|.|..|.   ..|..++++++|..+++|...+..++..+.||.+.|..++.+.....+++++.|.-|++
T Consensus       182 ~ikrLlgH~naVyca~fD---rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFD---RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHhhhhheeeeeec---cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence            455678999999999999   79999999999999999999999999999999999999998888888899999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      |.
T Consensus       259 Wr  260 (1113)
T KOG0644|consen  259 WR  260 (1113)
T ss_pred             Ee
Confidence            93

>KOG2106|consensus

Probab=98.74  E-value=4.4e-07  Score=54.40  Aligned_cols=73  Identities=16%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-E---EEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-W---IGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      +...++++.+++|+   ++|..++.++.|+.+.+|.+..+. .   ...+.+  ..|.+++|++|++++.+.+.|-.|..
T Consensus       443 ~~~d~~~ls~v~ys---p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  443 IHTDNEQLSVVRYS---PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             EEecCCceEEEEEc---CCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEE
Confidence            33347889999999   799999999999999999886543 2   233344  78999999999999999999999988


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      |.
T Consensus       518 W~  519 (626)
T KOG2106|consen  518 WK  519 (626)
T ss_pred             Ec
Confidence            83

>KOG3881|consensus

Probab=98.74  E-value=2.1e-07  Score=53.92  Aligned_cols=81  Identities=16%  Similarity=0.211  Sum_probs=68.7

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEE-ecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ..|+..+.-...++.++...   +.++.++.+...+.+..||.+.+..+.. +.+..+.+..+..+|.+.++++++-|..
T Consensus       237 RRPV~~fd~~E~~is~~~l~---p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy  313 (412)
T KOG3881|consen  237 RRPVAQFDFLENPISSTGLT---PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY  313 (412)
T ss_pred             CcceeEeccccCcceeeeec---CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee
Confidence            34555555556677777777   7899999999999999999998887766 8888999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +|++|
T Consensus       314 vRIhD  318 (412)
T KOG3881|consen  314 VRIHD  318 (412)
T ss_pred             EEEee
Confidence            99987

>KOG1036|consensus

Probab=98.73  E-value=4.4e-08  Score=55.11  Aligned_cols=60  Identities=15%  Similarity=0.103  Sum_probs=54.1

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      +|..++|+   +-.+.+++|+.||.|.+|+..+.+.+..+......|..++|+.+|..+|.++
T Consensus       234 PVNai~Fh---p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  234 PVNAIAFH---PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             EeceeEec---cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            68889999   5688999999999999999999999999988888899999999999998654

>KOG0307|consensus

Probab=98.73  E-value=7.7e-09  Score=65.71  Aligned_cols=80  Identities=25%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec--CCCCeEEEEEECCCCC-eEEEecCCCe
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDAS-KAASGAADFQ   83 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~~d~~   83 (88)
                      .+.++..|++.|..++|++  ..++++++|..+|.|.|||+.+-.......  .....|.+++|+..-. .+++++.+++
T Consensus       108 ~la~~~~h~G~V~gLDfN~--~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  108 VLATKSKHTGPVLGLDFNP--FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             HHhhhcccCCceeeeeccc--cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence            4566778999999999996  666799999999999999998654333332  2457899999988644 5567888889


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      ..+||
T Consensus       186 ~~iWD  190 (1049)
T KOG0307|consen  186 AVIWD  190 (1049)
T ss_pred             ceecc
Confidence            99998

>KOG1034|consensus

Probab=98.70  E-value=1.3e-07  Score=53.91  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             CCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCC-CeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA-SKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~i~~~~   88 (88)
                      |.+...-++|+....++ .+++.++.-|.|++.|+.++.....+.+|.+.|..+.+.|+. ++++++++|.++|+||
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN  164 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence            44455666776322333 477888888999999998888889999999999999999965 5677999999999996

>KOG0650|consensus

Probab=98.70  E-value=4.5e-08  Score=59.43  Aligned_cols=82  Identities=17%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEE------CCCCC---EEEEecCCCCe----EEEEEECC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQ------GDTGD---WIGTFEGHKGC----VWGVDINK   70 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~----i~~~~~~~   70 (88)
                      ..++.+++.-|...+..++|+   ..-.++++++.|+.+.+|-      +-...   .+..+.+|...    |....|+|
T Consensus       639 sskPyk~lr~H~~avr~Va~H---~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  639 SSKPYKTLRLHEKAVRSVAFH---KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             CcchhHHhhhhhhhhhhhhhc---cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence            457888889999999999999   6778999999999988872      21122   34556677554    88889999


Q ss_pred             CCCeEEEecCCCeEEEcC
Q psy6444          71 DASKAASGAADFQAKALK   88 (88)
Q Consensus        71 ~~~~~~~~~~d~~i~~~~   88 (88)
                      ..-++.+++.|++|++|-
T Consensus       716 ~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  716 RQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             CCceEEecCCCceEEeeC
Confidence            999999999999999983

>KOG0321|consensus

Probab=98.69  E-value=5.6e-08  Score=59.25  Aligned_cols=77  Identities=23%  Similarity=0.272  Sum_probs=58.4

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---------------------------EEEEecCCCCe
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---------------------------WIGTFEGHKGC   62 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~   62 (88)
                      .+.||++.|-.++|+|  .+...+++|+.|+.+.+||+.-..                           .+.....+.+.
T Consensus       139 ~~~GH~~SvkS~cf~~--~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~t  216 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMP--TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNT  216 (720)
T ss_pred             eecccccccchhhhcc--CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCc
Confidence            3778999999999998  888899999999999999875221                           11112233344


Q ss_pred             EEE---EEECCCCCeEEEecC-CCeEEEcC
Q psy6444          63 VWG---VDINKDASKAASGAA-DFQAKALK   88 (88)
Q Consensus        63 i~~---~~~~~~~~~~~~~~~-d~~i~~~~   88 (88)
                      |..   +-+..|...+++++. |+.|+|||
T Consensus       217 i~ssvTvv~fkDe~tlaSaga~D~~iKVWD  246 (720)
T KOG0321|consen  217 IFSSVTVVLFKDESTLASAGAADSTIKVWD  246 (720)
T ss_pred             eeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence            544   566778889998776 99999998

>KOG2394|consensus

Probab=98.69  E-value=1.9e-07  Score=56.17  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN   69 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   69 (88)
                      .-+...|++|+   +||++++++++|-.+.+|.+...+.+..-.+|+.+|..++|.
T Consensus       331 YFGGLLCvcWS---PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  331 YFGGLLCVCWS---PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             hccceEEEEEc---CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            34678899999   899999999999999999999888889999999999999998

>KOG1408|consensus

Probab=98.68  E-value=1.2e-07  Score=58.88  Aligned_cols=75  Identities=16%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEe--CCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec--CCCeEEE
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISAC--KDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA--ADFQAKA   86 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~d~~i~~   86 (88)
                      +..++.++.+++|+   ++|+++++|-  ....+++|++.....+..+..|+-.+.+++|+|.+.++.+.+  +|..+.+
T Consensus        74 vnssRk~~t~vAfS---~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv  150 (1080)
T KOG1408|consen   74 VNSSRKPLTCVAFS---QNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNV  150 (1080)
T ss_pred             ecccCcceeEEEEc---CCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEh
Confidence            44577899999999   7999999865  455799999988778888999999999999999999998765  6667777


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       151 ~d  152 (1080)
T KOG1408|consen  151 ND  152 (1080)
T ss_pred             hh
Confidence            74

>KOG1409|consensus

Probab=98.68  E-value=1.3e-07  Score=54.19  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      -.++.++.+|.+.+.++.|.   +....++++..|..+.+||+.-.+ ......+|...+..+..-+.-.++.+++.|+.
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd---~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~  263 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWD---PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG  263 (404)
T ss_pred             CceEEEEcCcccceEEEEEc---CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence            34677889999999999999   677899999999999999997443 34567788888887777667778889999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |-+||
T Consensus       264 i~~w~  268 (404)
T KOG1409|consen  264 IVVWN  268 (404)
T ss_pred             EEEEe
Confidence            99996

>KOG1188|consensus

Probab=98.68  E-value=2.3e-07  Score=53.08  Aligned_cols=83  Identities=19%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEE---------------------------
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGT---------------------------   55 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------   55 (88)
                      .++.+..++++...+..++|..  . ....+.+++.||.|++||++.......                           
T Consensus        59 tg~~l~~fk~~~~~~N~vrf~~--~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~Gt  136 (376)
T KOG1188|consen   59 TGQLLEEFKGPPATTNGVRFIS--CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGT  136 (376)
T ss_pred             chhhhheecCCCCcccceEEec--CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecc
Confidence            3566777888888888888872  2 346788999999999998763211000                           


Q ss_pred             ------------------------ecCCCCeEEEEEECC-CCCeEEEecCCCeEEEcC
Q psy6444          56 ------------------------FEGHKGCVWGVDINK-DASKAASGAADFQAKALK   88 (88)
Q Consensus        56 ------------------------~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~~   88 (88)
                                              ...|..-|+.++|+| +...+++++.||.+.++|
T Consensus       137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             ccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence                                    024667788899998 466888999999998886

>KOG1273|consensus

Probab=98.67  E-value=1.6e-07  Score=53.46  Aligned_cols=64  Identities=23%  Similarity=0.355  Sum_probs=52.7

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS   73 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   73 (88)
                      .+.+++.+|..+|.+++|+   ++|..+++++.|..+.+||+..+..+..+. ....|+...|+|..+
T Consensus        56 ~iar~lsaH~~pi~sl~WS---~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~  119 (405)
T KOG1273|consen   56 RIARMLSAHVRPITSLCWS---RDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKR  119 (405)
T ss_pred             chhhhhhccccceeEEEec---CCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccC
Confidence            3556788999999999999   899999999999999999999888766655 345677777777543

>KOG2110|consensus

Probab=98.67  E-value=6.1e-07  Score=51.79  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             CCCcEEEEEe-C-CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe-EEEc
Q psy6444          28 ESGYFLISAC-K-DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ-AKAL   87 (88)
Q Consensus        28 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-i~~~   87 (88)
                      .+..+++..+ . .|.|.+||..+-..+..+..|++.+.+++|+++|.++++++..|+ |||+
T Consensus       139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf  201 (391)
T KOG2110|consen  139 NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF  201 (391)
T ss_pred             CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence            3444555433 2 478999999988888999999999999999999999999999988 6665

>KOG0280|consensus

Probab=98.67  E-value=3.5e-07  Score=51.58  Aligned_cols=79  Identities=18%  Similarity=0.107  Sum_probs=61.4

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCEEEE-ecCCCCeEEEEEECC-CCCeEEEecCCCeE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDWIGT-FEGHKGCVWGVDINK-DASKAASGAADFQA   84 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i   84 (88)
                      ++..+.|.-+..-..|+.  .+.+.+++|+.|+.+..||++ .+..+.. .+.|...|.++.-+| ++.++++++.|..|
T Consensus       158 vq~wk~He~E~Wta~f~~--~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i  235 (339)
T KOG0280|consen  158 VQTWKVHEFEAWTAKFSD--KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI  235 (339)
T ss_pred             cccccccceeeeeeeccc--CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccce
Confidence            345677887777788874  444789999999999999997 3344433 566888888887766 56788999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus       236 ~~~D  239 (339)
T KOG0280|consen  236 RVLD  239 (339)
T ss_pred             eeee
Confidence            9997

>KOG0290|consensus

Probab=98.66  E-value=3.1e-07  Score=51.80  Aligned_cols=73  Identities=15%  Similarity=0.155  Sum_probs=60.3

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~~   88 (88)
                      +.+++...+|+.  .+-+++.+.+-|.+..+|++..+.   .-.++..|.+.|..++|...+. .+++.+.||++|+||
T Consensus       149 ~~aPlTSFDWne--~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  149 FCAPLTSFDWNE--VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             cCCccccccccc--CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            457888899984  566888899999999999998763   3456778999999999988655 667999999999987

>KOG4328|consensus

Probab=98.65  E-value=4.5e-07  Score=53.57  Aligned_cols=77  Identities=22%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             EecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCC----CCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCe
Q psy6444          10 TCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQ   83 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~   83 (88)
                      ..+-+.+++.+++|+|  ... ..+++|.+.|.|-+|++..    ..-+..+..|...|.++.|+|. ...+.+.+.||+
T Consensus       181 v~kv~~~Rit~l~fHP--t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHP--TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             eeEecccceEEEEecc--cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            3444778999999996  444 5788888899999999952    2244566778899999999995 457789999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      ||.-|
T Consensus       259 iR~~D  263 (498)
T KOG4328|consen  259 IRLQD  263 (498)
T ss_pred             eeeee
Confidence            99754

>KOG1009|consensus

Probab=98.65  E-value=4.8e-08  Score=56.72  Aligned_cols=75  Identities=24%  Similarity=0.322  Sum_probs=68.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ...+.+.+|...+..++|+   +++..+++++-|..+.+||+..+..+..+..|..-+..++|.|.++++++-+.|..
T Consensus       114 ~v~k~lr~h~~diydL~Ws---~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~  188 (434)
T KOG1009|consen  114 VVKKVLRGHRDDIYDLAWS---PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH  188 (434)
T ss_pred             EEEEEecccccchhhhhcc---CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence            4577888999999999999   79999999999999999999999999999999999999999999999988777763

>KOG2096|consensus

Probab=98.63  E-value=6.8e-07  Score=51.12  Aligned_cols=72  Identities=14%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .|...+..+...   .++.++.+++.|..|++|+.. |..+..+......-...+.+|+|+++++++....+++|.
T Consensus       185 kh~v~~i~iGiA---~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE  256 (420)
T KOG2096|consen  185 KHQVDIINIGIA---GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWE  256 (420)
T ss_pred             hcccceEEEeec---CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEE
Confidence            355667777777   677899999999999999997 888888877766666778899999999999888888883

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.61  E-value=7.3e-07  Score=53.97  Aligned_cols=70  Identities=17%  Similarity=0.117  Sum_probs=56.4

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ....+.+.+++   ++.++++.|+.||.+.+||...+..  ......-....++|+|+|..++.++..|.+.+||
T Consensus       258 L~s~v~~ca~s---p~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  258 LPSQVICCARS---PSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             cCCcceEEecC---cccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            45678888999   7999999999999999999865432  2222333457889999999999999999999987

>KOG2055|consensus

Probab=98.61  E-value=1.2e-06  Score=51.92  Aligned_cols=70  Identities=17%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE--EEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV--WGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+.|..+.|+   .++..++..+.+|.|.+|++....+++.+.-. +.+  ..++.++++.++++++..|.+.+||
T Consensus       344 eG~v~~~~fs---Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  344 EGVVSDFTFS---SDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             ccEEeeEEEe---cCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEec
Confidence            3678889999   89999998888999999999888777777643 334  4667789999999999999999986

>KOG2048|consensus

Probab=98.60  E-value=2.8e-06  Score=52.29  Aligned_cols=75  Identities=21%  Similarity=0.226  Sum_probs=63.9

Q ss_pred             eEEecCCC-CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           8 PLTCSGHT-RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         8 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ...+.++. +.+..++|+    ++..|++.+-+|.+..||+.+.+....+....+.|+.++.+|.+..++-+|+||-+..
T Consensus        61 ~~vi~g~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~  136 (691)
T KOG2048|consen   61 EPVIHGPEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD  136 (691)
T ss_pred             eEEEecCCCCceeeEEEc----cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence            34455654 559999998    5778889999999999999999999999999999999999999999988999996554

>KOG2919|consensus

Probab=98.59  E-value=6.9e-07  Score=51.10  Aligned_cols=72  Identities=21%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~~   88 (88)
                      .+-+.+++|+|  .+...++.++....+=+|.-.....+..+-+|.+.|+.++|.++|..+.++. .|-.|..||
T Consensus       207 ~giisc~a~sP--~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  207 KGIISCFAFSP--MDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             cceeeeeeccC--CCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence            56788999998  8888999999888888888777888888889999999999999999998765 677898987

>KOG1523|consensus

Probab=98.59  E-value=6.7e-07  Score=50.93  Aligned_cols=80  Identities=13%  Similarity=0.068  Sum_probs=66.2

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-C--EEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-D--WIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      -++..+++.|...|..++|+   +..+.+++++.|..-.+|....+ .  ..-.+..+.++..++.|+|..+.++.++..
T Consensus        45 w~~~htls~Hd~~vtgvdWa---p~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga  121 (361)
T KOG1523|consen   45 WEPAHTLSEHDKIVTGVDWA---PKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA  121 (361)
T ss_pred             ceeceehhhhCcceeEEeec---CCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCc
Confidence            35678899999999999999   78999999999999999988443 3  233445577889999999999999999888


Q ss_pred             CeEEEc
Q psy6444          82 FQAKAL   87 (88)
Q Consensus        82 ~~i~~~   87 (88)
                      ..+-+|
T Consensus       122 r~isVc  127 (361)
T KOG1523|consen  122 RLISVC  127 (361)
T ss_pred             cEEEEE
Confidence            777665

>KOG1310|consensus

Probab=98.59  E-value=2.9e-07  Score=55.77  Aligned_cols=77  Identities=16%  Similarity=0.153  Sum_probs=62.4

Q ss_pred             EecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCC----------CCEEEEecCCCCeEEEEEECCCC-CeEEE
Q psy6444          10 TCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDT----------GDWIGTFEGHKGCVWGVDINKDA-SKAAS   77 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~-~~~~~   77 (88)
                      .-.||++.|.++.|-|  ..+ +.++++..|+.|++||+..          ....+.+.-|..++..++-.|++ ..+++
T Consensus        88 I~TgHtaNIFsvKFvP--~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws  165 (758)
T KOG1310|consen   88 ISTGHTANIFSVKFVP--YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS  165 (758)
T ss_pred             eecccccceeEEeeec--cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE
Confidence            3457999999999987  555 5778888899999999874          12345567788889889888887 78889


Q ss_pred             ecCCCeEEEcC
Q psy6444          78 GAADFQAKALK   88 (88)
Q Consensus        78 ~~~d~~i~~~~   88 (88)
                      +++||++|.+|
T Consensus       166 asEDGtirQyD  176 (758)
T KOG1310|consen  166 ASEDGTIRQYD  176 (758)
T ss_pred             ecCCcceeeec
Confidence            99999999876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.58  E-value=3e-06  Score=47.38  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=57.3

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d   81 (88)
                      .++.+..+..+. .+..++|+   ++++.+ +++..++.+.+|+..+++.+..+..+.. +..+.++|++..++ ++..+
T Consensus        20 t~~~~~~~~~~~-~~~~l~~~---~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~   94 (300)
T TIGR03866        20 TLEVTRTFPVGQ-RPRGITLS---KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDD   94 (300)
T ss_pred             CCceEEEEECCC-CCCceEEC---CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCC
Confidence            345666666553 35678899   688765 5667788999999988777666654433 45678999998765 44568


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus        95 ~~l~~~d  101 (300)
T TIGR03866        95 NLVTVID  101 (300)
T ss_pred             CeEEEEE
Confidence            8999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.58  E-value=4.4e-06  Score=47.74  Aligned_cols=80  Identities=34%  Similarity=0.412  Sum_probs=64.3

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEE-EecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      +..+..+.+|...+.+++|+   +++. .+++++.++.+.+|+...+..+. .+.+|.... ...|++++..+++++.|+
T Consensus       188 ~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~  263 (466)
T COG2319         188 GKPLSTLAGHTDPVSSLAFS---PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG  263 (466)
T ss_pred             CceEEeeccCCCceEEEEEc---CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCC
Confidence            35667778899999999999   6777 55555899999999887677766 577777664 337899988888999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++|+
T Consensus       264 ~~~~~~  269 (466)
T COG2319         264 TIRLWD  269 (466)
T ss_pred             cEEEee
Confidence            999986

>KOG4714|consensus

Probab=98.57  E-value=5.2e-08  Score=54.08  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=58.9

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~~   88 (88)
                      .|.+++-+|  .+...+++|+.+|.+-+||.++.. ....++.|+..++.+-|+| ++..+++++.||.+..||
T Consensus       181 ~v~~l~~hp--~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  181 AVTALCSHP--AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             cchhhhCCc--ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            377888886  677888899999999999998765 3355678999999999999 577899999999999986

>KOG4227|consensus

Probab=98.54  E-value=4.8e-07  Score=53.05  Aligned_cols=77  Identities=21%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC------CCEEEEecC-CCCeEEEEEECCCCCeEEEecCC
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT------GDWIGTFEG-HKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      +-+.+|++-|.++.|+   .++++|++|+.|-.+.+|.+..      .+.+..... |...|.+++|......+.++..+
T Consensus        50 KD~~~H~GCiNAlqFS---~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFS---HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhccccceeeec---cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            3456799999999999   8999999999999999998752      244444433 56889999999988899999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +++...|
T Consensus       127 ~~VI~HD  133 (609)
T KOG4227|consen  127 GTVIKHD  133 (609)
T ss_pred             ceeEeee
Confidence            8876653

>KOG1524|consensus

Probab=98.52  E-value=4.8e-07  Score=54.73  Aligned_cols=73  Identities=18%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-----------------------------
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-----------------------------   58 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   58 (88)
                      +...+.|.+-|.+++|+   +..+.+++++.|-..++||.. |..++....                             
T Consensus       179 ~i~WkAHDGiiL~~~W~---~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p  254 (737)
T KOG1524|consen  179 IIRWRAHDGLVLSLSWS---TQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSP  254 (737)
T ss_pred             eeEEeccCcEEEEeecC---ccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeeeeeeeecCC
Confidence            33457899999999999   799999999999999999875 333333222                             


Q ss_pred             CCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444          59 HKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus        59 ~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ..+.|..++|++||.++++++..|.+
T Consensus       255 ~~GSifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  255 RVGSIFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             CccceEEEEEcCCCceeeccccCceE
Confidence            34566666777777766666655554

>KOG3914|consensus

Probab=98.52  E-value=4e-07  Score=52.80  Aligned_cols=76  Identities=22%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEE-ecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ...-||-..+.+++++   ++.++++++..|..|++=.++....+.. +.||+.-|..++.-+ ++.+++++.|+++++|
T Consensus       145 ~~~lGhvSml~dVavS---~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVS---PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW  220 (390)
T ss_pred             chhhhhhhhhheeeec---CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence            3456788889999999   7999999999999999866654444433 467888888888765 4558899999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       221 d  221 (390)
T KOG3914|consen  221 D  221 (390)
T ss_pred             e
Confidence            7

>KOG1240|consensus

Probab=98.51  E-value=1.9e-06  Score=56.22  Aligned_cols=82  Identities=18%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-------CEEEEecCCCCeEEEEEECCCCCeEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDASKAA   76 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~   76 (88)
                      .|..+..+..|...+..++.++  +.+.++++++.||.|++|+...-       +....+......+..+.+.+.+.+++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             cceEeehhhhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            4566777888888888888885  66699999999999999987531       12223333456778888888999999


Q ss_pred             EecCCCeEEEc
Q psy6444          77 SGAADFQAKAL   87 (88)
Q Consensus        77 ~~~~d~~i~~~   87 (88)
                      .++.||.+++.
T Consensus      1115 v~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1115 VSTKDGSVRVL 1125 (1431)
T ss_pred             EEcCCCeEEEE
Confidence            99999999875

>smart00320 WD40 WD40 repeats

Probab=98.51  E-value=1.5e-06  Score=33.45  Aligned_cols=37  Identities=30%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          52 WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        52 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+..+..+...+.++.|.+.+..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455567778899999999889999999999999997

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1272|consensus

Probab=98.51  E-value=3.1e-07  Score=54.45  Aligned_cols=79  Identities=13%  Similarity=0.087  Sum_probs=57.4

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ....++..+.+|.++|.++++.   ++|.++++.+.|..+++||+++-..+..+.. .-....+++|..+.+.++  ...
T Consensus       281 ~skePLvKiLcH~g~V~siAv~---~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~--~G~  354 (545)
T KOG1272|consen  281 NSKEPLVKILCHRGPVSSIAVD---RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALS--YGD  354 (545)
T ss_pred             CCcchHHHHHhcCCCcceEEEC---CCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeee--cCC
Confidence            3455677788899999999999   7999999999999999999987665555544 233455677766654433  333


Q ss_pred             eEEEc
Q psy6444          83 QAKAL   87 (88)
Q Consensus        83 ~i~~~   87 (88)
                      .+.+|
T Consensus       355 ~v~iw  359 (545)
T KOG1272|consen  355 HVQIW  359 (545)
T ss_pred             eeeee
Confidence            45555

>KOG0649|consensus

Probab=98.50  E-value=5.2e-06  Score=46.14  Aligned_cols=79  Identities=15%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCC----------CeEEEEEECCCC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK----------GCVWGVDINKDA   72 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~   72 (88)
                      .+++..+.++||+..+.++.--   .....+++++.||.+++||..+++.+..+...+          +.|-+  +..+.
T Consensus       144 E~G~i~r~~rGHtDYvH~vv~R---~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~e  218 (325)
T KOG0649|consen  144 EDGRIQREYRGHTDYVHSVVGR---NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNE  218 (325)
T ss_pred             cCCEEEEEEcCCcceeeeeeec---ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccC
Confidence            3678889999999999999874   345578899999999999999988777664332          22333  33445


Q ss_pred             CeEEEecCCCeEEEc
Q psy6444          73 SKAASGAADFQAKAL   87 (88)
Q Consensus        73 ~~~~~~~~d~~i~~~   87 (88)
                      .++++++. ..+.+|
T Consensus       219 dWlvCGgG-p~lslw  232 (325)
T KOG0649|consen  219 DWLVCGGG-PKLSLW  232 (325)
T ss_pred             ceEEecCC-CceeEE
Confidence            57766543 344444

>KOG1007|consensus

Probab=98.44  E-value=6.5e-07  Score=50.56  Aligned_cols=72  Identities=14%  Similarity=0.102  Sum_probs=51.2

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCCeE-EEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDASKA-ASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~d~~i~~~~   88 (88)
                      +.....-+|+|- .++..+ ....++.+..||+++-.....+ ..|...+..++|+|+.+++ ++++.|+.+++||
T Consensus       170 ~~~ftsg~WspH-Hdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD  243 (370)
T KOG1007|consen  170 RHSFTSGAWSPH-HDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWD  243 (370)
T ss_pred             cceecccccCCC-CccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEe
Confidence            344555667741 234444 4555789999999865554444 3578889999999987655 5888999999997

>KOG1523|consensus

Probab=98.44  E-value=1.5e-06  Score=49.53  Aligned_cols=79  Identities=11%  Similarity=0.133  Sum_probs=61.3

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEe--cCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTF--EGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ++...+..+.+.+.++.|+   +.++.++.++....+.+|-+....  .+.+.  +.....|.+++|+|++-+++.++.|
T Consensus        91 kptlvLlRiNrAAt~V~Ws---P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   91 KPTLVLLRINRAATCVKWS---PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             ccceeEEEeccceeeEeec---CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            4556677788999999999   789999999988877776554322  33222  2245778999999999999999999


Q ss_pred             CeEEEc
Q psy6444          82 FQAKAL   87 (88)
Q Consensus        82 ~~i~~~   87 (88)
                      +.+|++
T Consensus       168 ~k~rVf  173 (361)
T KOG1523|consen  168 GKCRVF  173 (361)
T ss_pred             cceeEE
Confidence            999986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=5.9e-06  Score=49.29  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=53.6

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCE--EEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      ++...+.+..|...+..+.|+   ++|+.++..+.+   ..+.+|++.++..  +..+.++   ...++|+|+++.++.+
T Consensus       192 dg~~~~~lt~~~~~v~~p~wS---PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~  265 (429)
T PRK01742        192 DGFNQFIVNRSSQPLMSPAWS---PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFA  265 (429)
T ss_pred             CCCCceEeccCCCccccceEc---CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEE
Confidence            344455667777889999999   799888876643   3588999876653  2333333   3457999999988764


Q ss_pred             -cCCCeEEEc
Q psy6444          79 -AADFQAKAL   87 (88)
Q Consensus        79 -~~d~~i~~~   87 (88)
                       ..++...+|
T Consensus       266 ~~~~g~~~Iy  275 (429)
T PRK01742        266 SSKDGVLNIY  275 (429)
T ss_pred             EecCCcEEEE
Confidence             467765554

>KOG4378|consensus

Probab=98.41  E-value=3.7e-06  Score=50.66  Aligned_cols=79  Identities=11%  Similarity=0.074  Sum_probs=63.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC-CCeEEEEEECCCCCeEE-EecCCCeE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH-KGCVWGVDINKDASKAA-SGAADFQA   84 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~-~~~~d~~i   84 (88)
                      ..+.+++|+..|.++.|+   -..+++++++..|.|.+..+.++.....+.-. ...++.+++++-.+.++ +++.+|.+
T Consensus       113 ~hr~lkdh~stvt~v~YN---~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V  189 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYN---NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV  189 (673)
T ss_pred             HhhhccCCcceeEEEEec---CCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence            456788999999999998   67789999999999999988776655555433 45567889999777555 78899999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      .+||
T Consensus       190 tlwD  193 (673)
T KOG4378|consen  190 TLWD  193 (673)
T ss_pred             EEEe
Confidence            9997

>KOG4227|consensus

Probab=98.39  E-value=7.1e-06  Score=48.36  Aligned_cols=80  Identities=15%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             ceeEEecC-CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC--CCCeEEEEEECCCCCeEEEecCCC
Q psy6444           6 QIPLTCSG-HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         6 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      +++..... |...+.|+.|.   ....++++|..++.+...|+.+...+..+..  ..+.|.++..+|....+++.+.++
T Consensus        95 KPI~~~~~~H~SNIF~L~F~---~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~  171 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFD---LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAK  171 (609)
T ss_pred             CCceeccCccccceEEEEEc---cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCc
Confidence            55555555 45789999998   7778999999999999999987776655543  456899999999988999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+.+||
T Consensus       172 ~V~~~D  177 (609)
T KOG4227|consen  172 LVSFID  177 (609)
T ss_pred             eEEEEe
Confidence            999997

>KOG2111|consensus

Probab=98.38  E-value=6e-06  Score=47.12  Aligned_cols=55  Identities=11%  Similarity=0.104  Sum_probs=45.0

Q ss_pred             EEEeCCCCEEEEECCCCCE--EEEecCCCCeEEEEEECCCCCeEEEecCCCe-EEEcC
Q psy6444          34 ISACKDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQ-AKALK   88 (88)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-i~~~~   88 (88)
                      +.+.+-|.+.+-++.....  ...+..|.+.|.+++++.+|..+++++..|+ ||+||
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd  210 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD  210 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence            3566678898888764443  4677889999999999999999999998887 88886

>KOG1188|consensus

Probab=98.37  E-value=1.8e-06  Score=49.57  Aligned_cols=58  Identities=17%  Similarity=0.196  Sum_probs=49.5

Q ss_pred             cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC--CCCeEEEecCCCeEEEcC
Q psy6444          31 YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK--DASKAASGAADFQAKALK   88 (88)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d~~i~~~~   88 (88)
                      ..++.+..++.+++|+..++..+..++++...+..++|.-  ....+.+++.||+|++||
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD  100 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD  100 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence            3477788889999999998888999999888888888765  466778999999999997

>KOG4378|consensus

Probab=98.36  E-value=2.2e-06  Score=51.56  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=61.2

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..+.|..+...++|+|  .+...+++.+.|+.|.+||.........+. .......++|.++|.+++.+...|.+..||
T Consensus       203 ~~~~HsAP~~gicfsp--sne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  203 ASEAHSAPCRGICFSP--SNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             hhhhccCCcCcceecC--CccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence            3455888889999997  777889999999999999997555444443 345667899999999999999999988776

>smart00320 WD40 WD40 repeats

Probab=98.32  E-value=4.3e-06  Score=32.06  Aligned_cols=39  Identities=41%  Similarity=0.575  Sum_probs=33.1

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQ   46 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (88)
                      .++...+..|...+.++.|.   +.+..+++++.++.+.+|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFS---PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEEC---CCCCEEEEecCCCeEEEcC
Confidence            35667778899999999999   6778999999999999885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.32  E-value=4.1e-05  Score=45.11  Aligned_cols=81  Identities=19%  Similarity=0.230  Sum_probs=55.6

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec-CCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA-ADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~   82 (88)
                      +.+.+..+......-..+.++   ++|++++..+.|+.+.++|+.+.+.+..+... .....++++++|++++.++ .++
T Consensus        25 t~~~~~~i~~~~~~h~~~~~s---~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~  100 (369)
T PF02239_consen   25 TNKVVARIPTGGAPHAGLKFS---PDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPG  100 (369)
T ss_dssp             T-SEEEEEE-STTEEEEEE-T---T-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETT
T ss_pred             CCeEEEEEcCCCCceeEEEec---CCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCC
Confidence            345566666543333345677   79999999999999999999999988888754 4567899999999998665 667


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+.++|
T Consensus       101 ~v~v~D  106 (369)
T PF02239_consen  101 TVSVID  106 (369)
T ss_dssp             EEEEEE
T ss_pred             ceeEec
Confidence            777764

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=2.2e-05  Score=46.91  Aligned_cols=76  Identities=13%  Similarity=0.017  Sum_probs=54.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeC---CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-Eec
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACK---DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGA   79 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~   79 (88)
                      ++...+.+..+...+..++|+   ++|+.++..+.   +..+.+|++..+.. ..+....+.+...+|+|++..++ +.+
T Consensus       190 dg~~~~~lt~~~~~v~~p~wS---pDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~  265 (435)
T PRK05137        190 DGANVRYLTDGSSLVLTPRFS---PNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLS  265 (435)
T ss_pred             CCCCcEEEecCCCCeEeeEEC---CCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEe
Confidence            344556677788889999999   79988877653   35688999976654 34444555667889999999775 555


Q ss_pred             CCCe
Q psy6444          80 ADFQ   83 (88)
Q Consensus        80 ~d~~   83 (88)
                      .++.
T Consensus       266 ~~g~  269 (435)
T PRK05137        266 QGGN  269 (435)
T ss_pred             cCCC
Confidence            5554

>KOG1587|consensus

Probab=98.31  E-value=3.5e-06  Score=51.67  Aligned_cols=78  Identities=14%  Similarity=0.003  Sum_probs=60.9

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAK   85 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~   85 (88)
                      ...+..|-++|..+.++|  .-...+.+++ |-.+++|.-. ....+..+..+...+..++|||... .++++..||.+.
T Consensus       391 ~~~~~~h~g~v~~v~~nP--F~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~  467 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNP--FYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD  467 (555)
T ss_pred             cccccccCcceEeeecCC--Cccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence            345566889999999996  5555566666 8899999876 5566777777777899999999654 667888899999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       468 iWD  470 (555)
T KOG1587|consen  468 IWD  470 (555)
T ss_pred             hhh
Confidence            998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.31  E-value=9.1e-06  Score=45.47  Aligned_cols=57  Identities=16%  Similarity=0.107  Sum_probs=45.9

Q ss_pred             cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeE-EEecCCCeEEEcC
Q psy6444          31 YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKA-ASGAADFQAKALK   88 (88)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~d~~i~~~~   88 (88)
                      ..+++++.++.+.+|+..++..+..+..+. .+..+.|+|++..+ +++..++.+++||
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d   59 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVID   59 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEE
Confidence            467888999999999998888777777553 35678999999866 5667888999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=2.4e-05  Score=46.72  Aligned_cols=80  Identities=16%  Similarity=0.092  Sum_probs=54.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-Eec
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGA   79 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~   79 (88)
                      ++...+.+..+...+...+|+   ++|+.++..+..   ..+.+|++..+... .+....+.....+|+|++..++ +.+
T Consensus       184 dG~~~~~l~~~~~~v~~p~wS---PDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~  259 (427)
T PRK02889        184 DGQNAQSALSSPEPIISPAWS---PDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALS  259 (427)
T ss_pred             CCCCceEeccCCCCcccceEc---CCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEc
Confidence            344445556677788899999   799888766543   34888999877643 3333334556789999999876 566


Q ss_pred             CCCeEEEc
Q psy6444          80 ADFQAKAL   87 (88)
Q Consensus        80 ~d~~i~~~   87 (88)
                      .++...+|
T Consensus       260 ~~g~~~Iy  267 (427)
T PRK02889        260 RDGNSQIY  267 (427)
T ss_pred             cCCCceEE
Confidence            67665554

>KOG2321|consensus

Probab=98.26  E-value=9.3e-06  Score=49.67  Aligned_cols=81  Identities=14%  Similarity=0.156  Sum_probs=61.9

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec------CC-----CCeEEEEEECCCCC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE------GH-----KGCVWGVDINKDAS   73 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~i~~~~~~~~~~   73 (88)
                      |.-+..+....+.+.++..+   +...++++|+.+|.+.+||.+.......+.      .+     ...|.++.|+-+|-
T Consensus       165 GrfL~P~~~~~~~lN~v~in---~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL  241 (703)
T KOG2321|consen  165 GRFLNPFETDSGELNVVSIN---EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL  241 (703)
T ss_pred             cccccccccccccceeeeec---CccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce
Confidence            33445555556788899998   788899999999999999987654433332      12     23489999999999


Q ss_pred             eEEEecCCCeEEEcC
Q psy6444          74 KAASGAADFQAKALK   88 (88)
Q Consensus        74 ~~~~~~~d~~i~~~~   88 (88)
                      .++.+..+|.+.++|
T Consensus       242 ~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  242 HVAVGTSTGSVLIYD  256 (703)
T ss_pred             eEEeeccCCcEEEEE
Confidence            999999999998886

>KOG1587|consensus

Probab=98.23  E-value=4e-05  Score=47.22  Aligned_cols=80  Identities=18%  Similarity=0.073  Sum_probs=60.8

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE--E----EEecCCCCeEEEEEECCCCCe--EEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--I----GTFEGHKGCVWGVDINKDASK--AAS   77 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~i~~~~~~~~~~~--~~~   77 (88)
                      .+...+. ....|.++.|+|  .+...++.|..+|.|.+||...+..  .    .....|...+..+.|..+..-  +++
T Consensus       234 ~Pe~~~~-~~s~v~~~~f~p--~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s  310 (555)
T KOG1587|consen  234 TPELVLE-SPSEVTCLKFCP--FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS  310 (555)
T ss_pred             CceEEEe-cCCceeEEEecc--CCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence            3444444 357899999998  8889999999999999999976543  1    122347788888888775554  888


Q ss_pred             ecCCCeEEEcC
Q psy6444          78 GAADFQAKALK   88 (88)
Q Consensus        78 ~~~d~~i~~~~   88 (88)
                      ++.||.|..|+
T Consensus       311 ~ssDG~i~~W~  321 (555)
T KOG1587|consen  311 LSSDGSICSWD  321 (555)
T ss_pred             EecCCcEeeee
Confidence            88999999884

>KOG2106|consensus

Probab=98.22  E-value=6e-05  Score=45.71  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=44.4

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      .++.|.+|+   +.| .++.+...|.-.+.|..+...+..-. ....+..++|+|+|..++.+++|+.|.+|
T Consensus       408 d~~~~~~fh---psg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  408 DPAECADFH---PSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             CceeEeecc---Ccc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            344555555   344 55555555555555554433222222 36788999999999999999999999876

>KOG1963|consensus

Probab=98.19  E-value=2.4e-05  Score=49.41  Aligned_cols=69  Identities=23%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      |...|.++.|+   ++|..+++|+..+.+.+|...++. -.-+..-.+.|..+.++||+...+....|..|-+
T Consensus       250 H~~~V~~L~fS---~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  250 HHDEVNSLSFS---SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL  318 (792)
T ss_pred             cccccceeEEe---cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence            77899999999   899999999999999999998777 2344455678899999999999988888887654

>KOG1963|consensus

Probab=98.17  E-value=2e-05  Score=49.74  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=60.4

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC----CCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      |+-.+.+.+++   ++++.++++..+|.|.+|.--.    ......+.+|-..|.++.|+++|.++.+|+..+-+-+|.
T Consensus       204 Htf~~t~~~~s---pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  204 HTFNITCVALS---PNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hcccceeEEec---cccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence            55667889999   7999999999999999995322    124466788889999999999999999999999888884

>KOG4190|consensus

Probab=98.16  E-value=2.5e-06  Score=52.21  Aligned_cols=78  Identities=21%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-------CEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      ..+..+.||+..|..+..-   .+.+-++++++|+++++|.+...       .+...+..|+..|..+.|-.+.+.+++ 
T Consensus       726 irL~nf~GH~~~iRai~Ai---dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S-  801 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAI---DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS-  801 (1034)
T ss_pred             eeeecccCcHHHhHHHHhc---ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-
Confidence            3567788999998888765   67889999999999999988632       245667789999999988887777764 


Q ss_pred             cCCCeEEEcC
Q psy6444          79 AADFQAKALK   88 (88)
Q Consensus        79 ~~d~~i~~~~   88 (88)
                       -|+-+.+||
T Consensus       802 -cD~giHlWD  810 (1034)
T KOG4190|consen  802 -CDGGIHLWD  810 (1034)
T ss_pred             -ccCcceeec
Confidence             467788887

>KOG1334|consensus

Probab=98.15  E-value=1.9e-06  Score=51.52  Aligned_cols=77  Identities=21%  Similarity=0.292  Sum_probs=64.1

Q ss_pred             EecCCCCC--EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          10 TCSGHTRP--VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        10 ~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      .++||+..  |-.+-|--  |..+++++|+.-|.|.||+-.++..++.+.+...-|.++.-+|.-..+++++-|..|+||
T Consensus       386 vYKGHrN~~TVKgVNFfG--PrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW  463 (559)
T KOG1334|consen  386 VYKGHRNSRTVKGVNFFG--PRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW  463 (559)
T ss_pred             hhcccccccccceeeecc--CccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence            37888753  44554432  677899999999999999999888888899887788999989988899999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      -
T Consensus       464 T  464 (559)
T KOG1334|consen  464 T  464 (559)
T ss_pred             c
Confidence            3

>KOG0322|consensus

Probab=98.14  E-value=4.5e-06  Score=46.75  Aligned_cols=80  Identities=10%  Similarity=-0.041  Sum_probs=62.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ...|...|+.|.+.+.++.|.   +++ .+.++...|.+.+|.+++.+....+. .+...|..+..-|+ ..+.+.+.|.
T Consensus         3 pPdP~fvLRp~~~~v~s~~fq---a~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~   77 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQ---ANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP   77 (323)
T ss_pred             CCCCeeEeccccchheehhhc---cch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence            456778889999999999997   444 58999999999999998877666666 35567777776665 4566778888


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++.+|+
T Consensus        78 ~L~lw~   83 (323)
T KOG0322|consen   78 LLILWT   83 (323)
T ss_pred             eEEEEE
Confidence            888874

>KOG0771|consensus

Probab=98.13  E-value=3.6e-05  Score=45.20  Aligned_cols=68  Identities=26%  Similarity=0.349  Sum_probs=56.2

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ..+.+++.+   .+|++++-++.+|.|.+++..+-..+... ..|...|+.+.|+|+.+.+++.+.+.+..+
T Consensus       282 ~siSsl~VS---~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  282 KSISSLAVS---DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             CcceeEEEc---CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence            468888888   89999999999999999998765554444 358889999999999999988877776554

>KOG1517|consensus

Probab=98.12  E-value=3.9e-05  Score=50.07  Aligned_cols=83  Identities=24%  Similarity=0.245  Sum_probs=61.9

Q ss_pred             CCccceeEEecCCCCC--EEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEE--EEecCC--CC-eEEEEEECCCCC
Q psy6444           2 ASIRQIPLTCSGHTRP--VVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWI--GTFEGH--KG-CVWGVDINKDAS   73 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~-~i~~~~~~~~~~   73 (88)
                      +.....+...+.|...  |..+.+.   .+| ..+++++.+|.|.+||++....+  .....+  .+ ..+++..+++..
T Consensus      1241 a~~ds~v~~~R~h~~~~~Iv~~slq---~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1241 APPDSLVCVYREHNDVEPIVHLSLQ---RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP 1317 (1387)
T ss_pred             CCccccceeecccCCcccceeEEee---cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC
Confidence            3344567778888877  9999998   556 56999999999999999864322  222222  13 588899999999


Q ss_pred             eEEEecCCCeEEEcC
Q psy6444          74 KAASGAADFQAKALK   88 (88)
Q Consensus        74 ~~~~~~~d~~i~~~~   88 (88)
                      .+++++. +.|.+|+
T Consensus      1318 iiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYS 1331 (1387)
T ss_pred             eeeecCc-ceEEEEe
Confidence            9998887 8899985

>KOG2055|consensus

Probab=98.08  E-value=6.4e-05  Score=45.00  Aligned_cols=71  Identities=11%  Similarity=0.047  Sum_probs=57.5

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC--CCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT--GDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~~   88 (88)
                      .+.+.++.|+   +..+.+..++.|+.+.+|.++-  ...+..+.-..-.|....|.|+|. .+++++....+..||
T Consensus       213 ~~~I~sv~FH---p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  213 HGGITSVQFH---PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             cCCceEEEec---CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence            4679999999   7889999999999999998863  234555555567888889999999 777888877788876

>KOG4547|consensus

Probab=98.07  E-value=5e-05  Score=46.23  Aligned_cols=71  Identities=18%  Similarity=0.048  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +|-+.|.++.++   .+-..+.+++.|..+..|+......++.+......+..++.+||+..+++++  ++|.+||
T Consensus       100 ~h~~~v~~~~~~---~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~  170 (541)
T KOG4547|consen  100 KHYGNVNEILDA---QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLD  170 (541)
T ss_pred             CCCCcceeeecc---cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEE
Confidence            488899999988   6778999999999999999998888888998888999999999988887765  4677664

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.03  E-value=9.2e-05  Score=44.34  Aligned_cols=80  Identities=16%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAA   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~   80 (88)
                      +...+.+..+...+..++|+   ++|+.++..+..   ..+.+|++..+... .+....+.....+|+|++..++ +.+.
T Consensus       193 g~~~~~lt~~~~~v~~p~wS---pDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~  268 (433)
T PRK04922        193 GYNPQTILRSAEPILSPAWS---PDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSR  268 (433)
T ss_pred             CCCceEeecCCCccccccCC---CCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeC
Confidence            34445566667778899999   799888876643   35888898766542 3333334445679999999775 4444


Q ss_pred             CC--eEEEcC
Q psy6444          81 DF--QAKALK   88 (88)
Q Consensus        81 d~--~i~~~~   88 (88)
                      ++  .|.+||
T Consensus       269 ~g~~~Iy~~d  278 (433)
T PRK04922        269 DGNPEIYVMD  278 (433)
T ss_pred             CCCceEEEEE
Confidence            44  466554

>KOG0974|consensus

Probab=97.96  E-value=9.4e-05  Score=47.73  Aligned_cols=61  Identities=15%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++.-.+++++..+.+.+|...-......+.+|.+.|..+.++-+|+++++.+.|.++|+|+
T Consensus       143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~  203 (967)
T KOG0974|consen  143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWP  203 (967)
T ss_pred             CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeee
Confidence            5566788888889999998762222235889999999999999999999999999999995

>KOG1645|consensus

Probab=97.96  E-value=3.2e-05  Score=45.60  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCeEEE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQAKA   86 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~i~~   86 (88)
                      ...+.++...+..++|+|  .+..++..++.+..+++.|+.+...+..+..+ +.+++.+|..+...++ .+-..|.+.+
T Consensus       186 sq~lp~~g~~IrdlafSp--~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSP--FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             hhcccccchhhhhhccCc--cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            445566777899999996  66668889999999999999988877777766 8899999988766555 5557788888


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      +|
T Consensus       263 yD  264 (463)
T KOG1645|consen  263 YD  264 (463)
T ss_pred             EE
Confidence            76

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.90  E-value=0.00047  Score=41.23  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=50.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-Eec
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGA   79 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~   79 (88)
                      ++...+.+..+...+....|+   ++|+.++..+.+   ..+.+|++.++.. ..+....+......|+|++..++ +..
T Consensus       187 ~g~~~~~l~~~~~~~~~p~wS---pDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~  262 (430)
T PRK00178        187 DGARAVTLLQSREPILSPRWS---PDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLS  262 (430)
T ss_pred             CCCCceEEecCCCceeeeeEC---CCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEc
Confidence            344445555666778899999   799887765543   2477788876654 22332333445679999999776 444


Q ss_pred             CCC--eEEEc
Q psy6444          80 ADF--QAKAL   87 (88)
Q Consensus        80 ~d~--~i~~~   87 (88)
                      .++  .|.++
T Consensus       263 ~~g~~~Iy~~  272 (430)
T PRK00178        263 KDGNPEIYVM  272 (430)
T ss_pred             cCCCceEEEE
Confidence            444  35444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.00053  Score=41.19  Aligned_cols=80  Identities=13%  Similarity=0.027  Sum_probs=50.1

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeC---CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEE-ecC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACK---DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAAS-GAA   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~   80 (88)
                      +...+.+..+...+...+|+   ++|+.++..+.   +..+.++++..+.. ..+....+......|+|++..++. ...
T Consensus       188 g~~~~~lt~~~~~~~~p~wS---PDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SPDG~~La~~~~~  263 (429)
T PRK03629        188 GYNQFVVHRSPQPLMSPAWS---PDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSK  263 (429)
T ss_pred             CCCCEEeecCCCceeeeEEc---CCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCCcCCeEECCCCCEEEEEEcC
Confidence            33344455566788999999   79988876542   34578888876653 222222233445799999998874 344


Q ss_pred             CC--eEEEcC
Q psy6444          81 DF--QAKALK   88 (88)
Q Consensus        81 d~--~i~~~~   88 (88)
                      ++  .|.+||
T Consensus       264 ~g~~~I~~~d  273 (429)
T PRK03629        264 TGSLNLYVMD  273 (429)
T ss_pred             CCCcEEEEEE
Confidence            44  355553

>KOG4497|consensus

Probab=97.81  E-value=0.00026  Score=41.18  Aligned_cols=68  Identities=12%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             CEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCeEEEc
Q psy6444          17 PVVHLAFSDITESGYFLI-SACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQAKAL   87 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~i~~~   87 (88)
                      .|.-+.|.   .+...++ ...+++.+.+|++...+.-.++......+..++|+|+|+.++ +...+-+|.+|
T Consensus        50 ki~yieW~---ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVW  119 (447)
T KOG4497|consen   50 KIVYIEWK---ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVW  119 (447)
T ss_pred             Hhhheeee---ccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEE
Confidence            45567787   7776544 567788999999987777788887778889999999998776 56688889888

>KOG2041|consensus

Probab=97.81  E-value=6.2e-05  Score=47.66  Aligned_cols=74  Identities=20%  Similarity=0.219  Sum_probs=59.8

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec--CCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      -+++.||.+.|..+.|+   .+.+.+-+...+|.|.+|-+.++.+...+.  ..++-|.+++|+.+|..+.-.-.||.+
T Consensus        64 NQtLeGH~~sV~vvTWN---e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav  139 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWN---ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV  139 (1189)
T ss_pred             hhhhccCcceEEEEEec---cccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence            45789999999999999   788999999999999999988877554443  245677899999999987666666654

>KOG4640|consensus

Probab=97.80  E-value=0.00027  Score=43.88  Aligned_cols=69  Identities=10%  Similarity=0.037  Sum_probs=56.2

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEE-EEEECCCCCeEEEecCCCeEEEcC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVW-GVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..+-.+.|+   |..+.++.+..+|.+.++.+. -.++-.+.-+...+. +.+|.|||..++.+-.||+|++.|
T Consensus        21 ~~i~~~ewn---P~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   21 INIKRIEWN---PKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD   90 (665)
T ss_pred             cceEEEEEc---CccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence            346678899   788999999999999988886 445666665554454 999999999999999999999876

>KOG2139|consensus

Probab=97.80  E-value=0.00083  Score=39.56  Aligned_cols=64  Identities=17%  Similarity=-0.046  Sum_probs=46.5

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCeEE-EecCC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASKAA-SGAAD   81 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d   81 (88)
                      ..+.+..+.|+   |++.+++++..|...++|...... .+...- ..+.|..-.|+|+|+.++ +++..
T Consensus       237 glgg~slLkwS---Pdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs  302 (445)
T KOG2139|consen  237 GLGGFSLLKWS---PDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS  302 (445)
T ss_pred             CCCceeeEEEc---CCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCC
Confidence            45678889999   799999999999999999654332 222222 234888889999999765 44433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.77  E-value=0.00042  Score=41.56  Aligned_cols=66  Identities=18%  Similarity=0.080  Sum_probs=44.4

Q ss_pred             EEEEEEEecCCCCcEEEEEe-CCCCEEEE--ECCCCCEEEEecCCCCeEEEEEECCCCCeEEE-ecCCCeEEEc
Q psy6444          18 VVHLAFSDITESGYFLISAC-KDGKPMLR--QGDTGDWIGTFEGHKGCVWGVDINKDASKAAS-GAADFQAKAL   87 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~d~~i~~~   87 (88)
                      ...++|+   ++|+.++.+. .++...+|  +...+. +..+..+...+....|+|++..++. +..++...+|
T Consensus       250 ~~~~~wS---PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~  319 (429)
T PRK01742        250 NGAPAFS---PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVY  319 (429)
T ss_pred             cCceeEC---CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence            3467899   7998777654 67766655  554444 4455555566778899999997764 4456666665

>KOG4547|consensus

Probab=97.76  E-value=0.00056  Score=41.93  Aligned_cols=68  Identities=21%  Similarity=0.179  Sum_probs=55.0

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-----CCeEEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-----ASKAAS   77 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~   77 (88)
                      ....+..++.+..+..+..+   ++|..+++++  +.+++|++.+.+.+..|.+|.+.|..+.|.-.     |.++++
T Consensus       134 ~~~~~~~~~~~~~~~sl~is---~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs  206 (541)
T KOG4547|consen  134 KVIIRIWKEQKPLVSSLCIS---PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLS  206 (541)
T ss_pred             ceeeeeeccCCCccceEEEc---CCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeee
Confidence            34455666667778889999   7898998887  67999999999999999999999999888665     555554

>KOG1064|consensus

Probab=97.76  E-value=3.2e-05  Score=52.84  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=50.9

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++|.+.+.++++.   |..+.+++|+++|.+++||++....++.++.         +. ...++.+++..|.+++|.
T Consensus      2333 ~~H~~gaT~l~~~---P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYA---PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             eecCCCceEEEEc---CcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence            6799999999999   7899999999999999999986665555554         22 345667777778888874

>KOG1832|consensus

Probab=97.69  E-value=0.00026  Score=46.08  Aligned_cols=70  Identities=17%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      +.+++..|+....|++|+   ...++++.|+..|.+++|++.+|........|...++.+.-+.+|..+++.+
T Consensus      1093 ~w~~frd~~~~fTc~afs---~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFS---GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred             cchhhhccccceeeEEee---cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeec
Confidence            456778888999999999   7889999999999999999999998889999999999999999999877544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.68  E-value=0.0011  Score=39.39  Aligned_cols=78  Identities=21%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAAD   81 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d   81 (88)
                      ...+.+..+...+...+|+   ++|+.++.....   ..+.+|++.++... .+....+......|+|++..++ +...+
T Consensus       180 ~~~~~l~~~~~~~~~p~~S---pdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~  255 (417)
T TIGR02800       180 ANPQTITRSREPILSPAWS---PDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKD  255 (417)
T ss_pred             CCCEEeecCCCceecccCC---CCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCC
Confidence            3344555566678888999   799888876543   36888998776542 2333444556689999998775 44444


Q ss_pred             C--eEEEc
Q psy6444          82 F--QAKAL   87 (88)
Q Consensus        82 ~--~i~~~   87 (88)
                      +  .+.+|
T Consensus       256 ~~~~i~~~  263 (417)
T TIGR02800       256 GNPDIYVM  263 (417)
T ss_pred             CCccEEEE
Confidence            3  35554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315|consensus

Probab=97.66  E-value=0.0013  Score=40.40  Aligned_cols=67  Identities=13%  Similarity=0.088  Sum_probs=48.0

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeC---CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC------CeEEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACK---DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD------FQAKA   86 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d------~~i~~   86 (88)
                      ++=.++-|+   +.|+.++-++-   .|.+.+||+.+.+.+..+.....  .-..|+|+|++++++...      +.+++
T Consensus       312 gpRN~~~fn---p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Ki  386 (566)
T KOG2315|consen  312 GPRNTAFFN---PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKI  386 (566)
T ss_pred             CCccceEEC---CCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence            444457788   68887776655   36899999998777777765433  345899999999987644      45555


Q ss_pred             c
Q psy6444          87 L   87 (88)
Q Consensus        87 ~   87 (88)
                      |
T Consensus       387 w  387 (566)
T KOG2315|consen  387 W  387 (566)
T ss_pred             E
Confidence            5

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.64  E-value=0.0045  Score=37.96  Aligned_cols=70  Identities=11%  Similarity=-0.034  Sum_probs=55.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      .++.....-+.+.++..+   ++|..++.+.....+.+.|+.++.....-+...+.|....|+|++++++-+-
T Consensus       393 e~kr~e~~lg~I~av~vs---~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf  462 (668)
T COG4946         393 EVKRIEKDLGNIEAVKVS---PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF  462 (668)
T ss_pred             eEEEeeCCccceEEEEEc---CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence            344555666888999999   7999999888877888889998886555566778999999999999998543

>KOG1334|consensus

Probab=97.64  E-value=0.00012  Score=44.27  Aligned_cols=75  Identities=17%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEE-ecCCCCeEEEEEECCC--CCeEEEecCCCeEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKD--ASKAASGAADFQAK   85 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~--~~~~~~~~~d~~i~   85 (88)
                      ..|..|.+-|..+.|+   ..|..+++++.|..+.+|+-..+..... ..+|...+.--.|-|.  -+.+++++.|+.++
T Consensus       136 ~kL~~H~GcVntV~FN---~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFN---QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hcccCCCCccceeeec---ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            4577899999999999   8999999999999999999766654433 4567776665566663  44677888888877


Q ss_pred             E
Q psy6444          86 A   86 (88)
Q Consensus        86 ~   86 (88)
                      +
T Consensus       213 ~  213 (559)
T KOG1334|consen  213 V  213 (559)
T ss_pred             e
Confidence            5

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.63  E-value=0.0013  Score=39.85  Aligned_cols=71  Identities=17%  Similarity=0.042  Sum_probs=44.4

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeC-CC--CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCe
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACK-DG--KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQ   83 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~   83 (88)
                      +.+..+...+....|+   ++|+.++..+. ++  .+.++++..+... .+....+......|+|++..++ +...++.
T Consensus       211 ~~l~~~~~~~~~p~wS---PDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~  285 (448)
T PRK04792        211 QMLLRSPEPLMSPAWS---PDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQ  285 (448)
T ss_pred             eEeecCCCcccCceEC---CCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence            3444455667789999   79988776543 33  4777788766532 2222223334678999999776 4455554

>KOG1517|consensus

Probab=97.61  E-value=0.0013  Score=43.57  Aligned_cols=61  Identities=13%  Similarity=0.242  Sum_probs=49.6

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCCe--EEEEEECCCCCe-EEEecCCCeEEEcC
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKGC--VWGVDINKDASK-AASGAADFQAKALK   88 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--i~~~~~~~~~~~-~~~~~~d~~i~~~~   88 (88)
                      ..|+.++.|..||.+++||.+...   .+.....|...  |.++.+.+.|.. +++++.+|.|++||
T Consensus      1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred             cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence            457899999999999999986432   45666667666  889999887665 88999999999997

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.54  E-value=0.0015  Score=39.28  Aligned_cols=77  Identities=12%  Similarity=-0.053  Sum_probs=44.5

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeC-CCCEEEEEC--CCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC--
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACK-DGKPMLRQG--DTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF--   82 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~--   82 (88)
                      ...+..+.+......|+   ++|+.++..+. ++...+|.+  ..+.. ..+...........|+|++++++..+.++  
T Consensus       276 ~~~lt~~~~~~~~~~wS---pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~  351 (427)
T PRK02889        276 LRRLTQSSGIDTEPFFS---PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGA  351 (427)
T ss_pred             cEECCCCCCCCcCeEEc---CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCc
Confidence            34444455555677899   79987776554 456666654  33332 22222222334578999999987554332  


Q ss_pred             -eEEEcC
Q psy6444          83 -QAKALK   88 (88)
Q Consensus        83 -~i~~~~   88 (88)
                       .|.+||
T Consensus       352 ~~I~v~d  358 (427)
T PRK02889        352 FKLYVQD  358 (427)
T ss_pred             EEEEEEE
Confidence             466654

>KOG2695|consensus

Probab=97.51  E-value=0.0005  Score=40.20  Aligned_cols=73  Identities=18%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE---EEEecCCCCeEEEE--EECCCCCeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW---IGTFEGHKGCVWGV--DINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~--~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      |...|.++..-.  .+++.+.+.+-+|.|.+||.+-.++   +..+.+|.+...-+  ...+....+++++.|.-.|+|.
T Consensus       297 h~Ssvtslq~Lq--~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  297 HDSSVTSLQILQ--FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS  374 (425)
T ss_pred             cCcchhhhhhhc--cccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence            556666655432  3577888888899999999875554   88888886654322  3345555777899999999993

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.47  E-value=0.0025  Score=36.82  Aligned_cols=69  Identities=6%  Similarity=-0.086  Sum_probs=45.4

Q ss_pred             CEEEEEEEecCCCCcEEEE-EeCCCCEEEEECCCCCEEEE-----ec-CCCCeEEEEEECCCCCeEEEecC-CCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYFLIS-ACKDGKPMLRQGDTGDWIGT-----FE-GHKGCVWGVDINKDASKAASGAA-DFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~i~~~~~~~~~~~~~~~~~-d~~i~~~~   88 (88)
                      ....+.++   ++++.++. ...++.+.+|++.....+..     .. ........+.|+|++.++.++.. ++++.+|+
T Consensus       127 ~~~~~~~~---p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~  203 (330)
T PRK11028        127 GCHSANID---PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ  203 (330)
T ss_pred             cccEeEeC---CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence            34567788   68877754 44568899999875322211     11 11234567899999998876654 78888875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.46  E-value=0.0014  Score=37.92  Aligned_cols=64  Identities=8%  Similarity=0.090  Sum_probs=43.5

Q ss_pred             EEEEEecCCCCcEEEEEeC-CCCEEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444          20 HLAFSDITESGYFLISACK-DGKPMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL   87 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~   87 (88)
                      .+.++   +++++++.+.. ++.+.+|++....    .+..... ......+.++|++.+++++. .++.+.+|
T Consensus       232 ~i~~~---pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~  301 (330)
T PRK11028        232 DIHIT---PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVY  301 (330)
T ss_pred             eEEEC---CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEE
Confidence            57788   78988887754 5789999885432    1222221 12445789999999888655 57888887

>KOG0309|consensus

Probab=97.39  E-value=0.00088  Score=42.84  Aligned_cols=83  Identities=11%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      +...-..+-+|...+..+-|+|  .....+++++-|..+..|+.++.. .+..+..-.....-++|+.....+...++..
T Consensus       103 ~~aIef~lhghsraitd~n~~~--q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~  180 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNP--QHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN  180 (1081)
T ss_pred             ccceEEEEecCccceeccccCC--CCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence            4556778889999999999996  556789999999999999997654 3333333334456678877655555566777


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++||
T Consensus       181 ~i~vwd  186 (1081)
T KOG0309|consen  181 DIFVWD  186 (1081)
T ss_pred             ceEEEe
Confidence            788886

>KOG1064|consensus

Probab=97.36  E-value=0.0009  Score=46.43  Aligned_cols=78  Identities=12%  Similarity=0.057  Sum_probs=59.8

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEe---CCCCEEEEECCCC--C-EEEEecCCCCeEEEEEECCCCCeEEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISAC---KDGKPMLRQGDTG--D-WIGTFEGHKGCVWGVDINKDASKAAS   77 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~-~~~~~~~~~~~i~~~~~~~~~~~~~~   77 (88)
                      ..++....++|.....+++|-   .  ..+++++   .++.+.+||....  . .+.  ..|.+.++.+++.|+.+.+++
T Consensus      2281 ~pk~~~s~qchnk~~~Df~Fi---~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFI---G--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred             CCcceeccccCCccccceeee---e--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEe
Confidence            356777778888888888886   3  4555443   3567999986422  2 333  778899999999999999999


Q ss_pred             ecCCCeEEEcC
Q psy6444          78 GAADFQAKALK   88 (88)
Q Consensus        78 ~~~d~~i~~~~   88 (88)
                      ++.+|.+.+||
T Consensus      2354 ggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2354 GGRKGEVCLFD 2364 (2439)
T ss_pred             cCCcCcEEEee
Confidence            99999999997

>KOG2321|consensus

Probab=97.34  E-value=0.0015  Score=40.63  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             EEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          20 HLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++.++.  + ..-++.++....+.-+++..|+.+..+....+.++.+..++.+.++++++.++.+..||
T Consensus       138 Dm~y~~--~-scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  138 DMKYHK--P-SCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             cccccC--C-CccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence            445552  3 33344455455677778888998888888889999999999999999999999999997

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.27  E-value=0.0026  Score=26.64  Aligned_cols=31  Identities=10%  Similarity=0.199  Sum_probs=27.6

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGD   48 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (88)
                      ...|.+++|+   |..+.++.+..+|.+.++.+.
T Consensus        11 ~~~v~~~~w~---P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWC---PTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEEC---CCCCEEEEEECCCeEEEEECC
Confidence            3568999999   799999999999999999983

>KOG1409|consensus

Probab=97.25  E-value=0.0055  Score=36.04  Aligned_cols=78  Identities=24%  Similarity=0.277  Sum_probs=55.5

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-------------------------------------
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-------------------------------------   50 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------   50 (88)
                      ++....|..++..+.|+   ...+++++.+.|+.+.---...+                                     
T Consensus       107 ~r~~~~h~~~v~~~if~---~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~  183 (404)
T KOG1409|consen  107 LKDYLAHQARVSAIVFS---LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLE  183 (404)
T ss_pred             hhhhhhhhcceeeEEec---CCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEe
Confidence            34455678888888888   67778888777765432111110                                     


Q ss_pred             ----CEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          51 ----DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        51 ----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                          ..+..+.+|.+.+.+..|.+....+.++..|.++.+||
T Consensus       184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd  225 (404)
T KOG1409|consen  184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD  225 (404)
T ss_pred             ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence                12234467889999999999888999999999999996

>KOG2695|consensus

Probab=97.25  E-value=0.00025  Score=41.43  Aligned_cols=70  Identities=17%  Similarity=0.258  Sum_probs=52.7

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC----CEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEEcC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKALK   88 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~~   88 (88)
                      +.|.++.|+   ..++.++.|+.+|.|...|++.+    .+-...-.|...++++..-. .++++.+.+.+++|++||
T Consensus       253 sDVfAlQf~---~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD  327 (425)
T KOG2695|consen  253 SDVFALQFA---GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD  327 (425)
T ss_pred             hhHHHHHhc---ccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence            557778887   66889999999999999998754    22233345778888775433 566777888999999997

>KOG4532|consensus

Probab=97.22  E-value=0.0092  Score=34.18  Aligned_cols=68  Identities=10%  Similarity=-0.032  Sum_probs=51.7

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEec-CCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..+.++   +++.++++.+....+.+|.++...  .+.... .....-....|+....+++.+.-|+++.+||
T Consensus       161 ~ns~~~s---nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D  231 (344)
T KOG4532|consen  161 QNSLHYS---NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD  231 (344)
T ss_pred             eeeeEEc---CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence            4566777   799999999999999999887543  223222 2334446678999999999999999999997

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.22  E-value=0.01  Score=35.88  Aligned_cols=67  Identities=9%  Similarity=0.014  Sum_probs=41.3

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCC-CCEEEE--ECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKD-GKPMLR--QGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      ..+..+...+....|+   ++|+.++..+.+ +...+|  +...+.. ..+...........|+|++.+++..+
T Consensus       280 ~~lt~~~~~~~~~~wS---PDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        280 RQVTDGRSNNTEPTWF---PDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS  349 (429)
T ss_pred             EEccCCCCCcCceEEC---CCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEE
Confidence            3344444566788999   799877766553 444555  5554433 33333334455678999999887544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.18  E-value=0.01  Score=35.80  Aligned_cols=68  Identities=9%  Similarity=-0.017  Sum_probs=43.2

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeC-CC--CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACK-DG--KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      ...+..+........|+   ++|+.++..+. ++  .+.+++...+. ...+....+......|+|++..++...
T Consensus       282 ~~~Lt~~~~~~~~~~~s---pDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        282 TTRLTDSPAIDTSPSYS---PDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTK  352 (435)
T ss_pred             eEEccCCCCccCceeEc---CCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEE
Confidence            34455555556678899   78987776553 33  46666765444 333433344456678999999887544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.16  E-value=0.012  Score=33.60  Aligned_cols=60  Identities=15%  Similarity=0.082  Sum_probs=41.8

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCC---CeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHK---GCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+|+.++ ...|..+.+.......  .+.+.+..+   .+=+.++|+||+..++.+...|+|+++|
T Consensus         7 ~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfd   71 (282)
T PF15492_consen    7 SDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFD   71 (282)
T ss_pred             CCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEe
Confidence            5665555 5567788888765432  334443322   3336789999999999999999999986

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.15  E-value=0.018  Score=34.27  Aligned_cols=74  Identities=11%  Similarity=0.039  Sum_probs=44.3

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeC-CC--CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC---e
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACK-DG--KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF---Q   83 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~---~   83 (88)
                      .+..+........|+   ++|+.++..+. .+  .+.+++...+.. ..+...........|+|++.+++....+.   .
T Consensus       272 ~l~~~~~~~~~~~~s---~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  347 (417)
T TIGR02800       272 RLTNGPGIDTEPSWS---PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN  347 (417)
T ss_pred             ECCCCCCCCCCEEEC---CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence            333444444567888   78887765544 33  355667665443 33443445566778999999887665543   4


Q ss_pred             EEEc
Q psy6444          84 AKAL   87 (88)
Q Consensus        84 i~~~   87 (88)
                      +.++
T Consensus       348 i~~~  351 (417)
T TIGR02800       348 IAVM  351 (417)
T ss_pred             EEEE
Confidence            4444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.14  E-value=0.0093  Score=36.00  Aligned_cols=76  Identities=9%  Similarity=0.023  Sum_probs=43.7

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeC-CCC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec-CCC--
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACK-DGK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA-ADF--   82 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~--   82 (88)
                      ..+..+......++|+   ++|+.++..+. ++.  +..+++..+.. ..+..........+|+|++.+++..+ .++  
T Consensus       285 ~~lt~~~~~~~~~~~s---pDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~  360 (433)
T PRK04922        285 TRLTNHFGIDTEPTWA---PDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQY  360 (433)
T ss_pred             EECccCCCCccceEEC---CCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCce
Confidence            3444444445678899   78987776553 444  44556554443 22222223344679999999887543 222  


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+.+||
T Consensus       361 ~I~v~d  366 (433)
T PRK04922        361 RIAVMD  366 (433)
T ss_pred             eEEEEE
Confidence            466654

>KOG2079|consensus

Probab=97.12  E-value=0.0069  Score=40.30  Aligned_cols=67  Identities=19%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCC---eEEEEEECCCCCeEEEecCCCe
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      -+++|.+++|+   .+|..++.|..+|.|.+||..+++.+..+..+..   .+..+.+..++..++++-..|.
T Consensus       129 v~~~Vtsvafn---~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  129 VQGPVTSVAFN---QDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cCCcceeeEec---CCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            35789999999   8999999999999999999998887777655433   3344455555666667655554

>KOG3881|consensus

Probab=97.08  E-value=0.0068  Score=36.03  Aligned_cols=68  Identities=10%  Similarity=0.113  Sum_probs=53.6

Q ss_pred             EEEEEEEecCCC--CcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITES--GYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..+.|-   +.  ...++++..-+.+++||...++ ++.++......+.++...|.+.++.++...+.+..+|
T Consensus       205 ~tdi~Fl---~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  205 ITDIRFL---EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFD  275 (412)
T ss_pred             eccceec---CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheec
Confidence            3456676   33  5788999999999999998765 5677777788999999999999999887766665554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.06  E-value=0.01  Score=35.31  Aligned_cols=59  Identities=12%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             CcEE-EEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          30 GYFL-ISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        30 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++++ +....++.+.+.|..+.+.+..+.........+.+++|++++..++.|+.+.++|
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD   64 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVID   64 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEE
Confidence            3444 4556678999999998888888886555555678899999988888899988875

...

>KOG0309|consensus

Probab=97.04  E-value=0.0011  Score=42.46  Aligned_cols=83  Identities=14%  Similarity=0.134  Sum_probs=57.1

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCC-CCeEEEecC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKD-ASKAASGAA   80 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~   80 (88)
                      +...++.....-......+.|+   .....+...+....+.+|+.+.+. .+..+++|...+..++|+.. ...+.+++.
T Consensus       146 Sp~~p~ys~~~w~s~asqVkwn---yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~  222 (1081)
T KOG0309|consen  146 SPHRPFYSTSSWRSAASQVKWN---YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN  222 (1081)
T ss_pred             CCCcceeeeecccccCceeeec---ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC
Confidence            3344444444444555678888   444444445556679999987654 67888889888888888653 345678889


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |++++.||
T Consensus       223 d~tvkfw~  230 (1081)
T KOG0309|consen  223 DGTVKFWD  230 (1081)
T ss_pred             CCceeeec
Confidence            99999996

>KOG3914|consensus

Probab=97.04  E-value=0.0047  Score=36.62  Aligned_cols=50  Identities=14%  Similarity=0.088  Sum_probs=36.7

Q ss_pred             EeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          36 ACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      .++.+.+.+|.... .....+.+|-+.+..++++||++.++++-.|..||+
T Consensus       128 agD~~~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRv  177 (390)
T KOG3914|consen  128 AGDVYSFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRV  177 (390)
T ss_pred             cCCceeeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEE
Confidence            33334444555443 223456788899999999999999999999999986

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.03  E-value=0.023  Score=34.43  Aligned_cols=64  Identities=11%  Similarity=-0.110  Sum_probs=42.1

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA   76 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   76 (88)
                      ..+..+...+....|+   ++|+.++....+   ..+.+|++..+.. ..+......+....|+|+++.++
T Consensus       320 ~~lt~~~~~~~~p~wS---PDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~  386 (428)
T PRK01029        320 RLLTKKYRNSSCPAWS---PDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLV  386 (428)
T ss_pred             EEeccCCCCccceeEC---CCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEE
Confidence            3344444556778899   799887765443   3578889876664 33333334556789999998776

>KOG2315|consensus

Probab=97.01  E-value=0.024  Score=35.22  Aligned_cols=68  Identities=15%  Similarity=0.035  Sum_probs=48.1

Q ss_pred             CCCEEEEEEEecCCCCcEEEE--EeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC---CeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLIS--ACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD---FQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d---~~i~~~~   88 (88)
                      .++|.++.|+   +++.-++.  |----.+.+|+.+ +..+..+..  +.-..+-|+|.|++++-++.+   |.+.+||
T Consensus       270 ~GPVhdv~W~---~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  270 EGPVHDVTWS---PSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCCceEEEEC---CCCCEEEEEEecccceEEEEcCC-CCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence            6899999999   67754443  2223457788875 666666654  334567889999988877655   6788887

>KOG0280|consensus

Probab=97.01  E-value=0.015  Score=33.66  Aligned_cols=68  Identities=15%  Similarity=0.123  Sum_probs=50.2

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~~   88 (88)
                      ..++.|+   +.+..+++...+|.+.+-+.....  ..+..+.|.-.++...|+. +.+.+.+++.|+.+..||
T Consensus       124 ~lslD~~---~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D  194 (339)
T KOG0280|consen  124 ALSLDIS---TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD  194 (339)
T ss_pred             eeEEEee---ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence            4467788   678888888888888854433332  2346788888888888865 455778999999999987

>KOG2066|consensus

Probab=97.00  E-value=0.014  Score=37.74  Aligned_cols=73  Identities=19%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             EEecCCCCCEEEEEEEec----------CCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-----CC
Q psy6444           9 LTCSGHTRPVVHLAFSDI----------TESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-----AS   73 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~   73 (88)
                      ..+..|.+.|....+.-+          ..+|+.+++++.||.+.+..+.+......+. ....+..++++|+     ..
T Consensus        52 ~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   52 FALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             eeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhh
Confidence            345556666665555410          0249999999999999998887777655554 3356788888887     34


Q ss_pred             eEEEecCCC
Q psy6444          74 KAASGAADF   82 (88)
Q Consensus        74 ~~~~~~~d~   82 (88)
                      ++++++..|
T Consensus       131 ~fv~GG~ag  139 (846)
T KOG2066|consen  131 QFVSGGMAG  139 (846)
T ss_pred             heeecCcce
Confidence            666666655

>KOG1354|consensus

Probab=96.92  E-value=0.011  Score=34.88  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=49.6

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-----EEEEecCC------------CCeEEEEEECCCCC--eEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-----WIGTFEGH------------KGCVWGVDINKDAS--KAA   76 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------~~~i~~~~~~~~~~--~~~   76 (88)
                      ..+.++.|.   ..|+.|++|..+|.+.+|.-....     ....++.|            ...|..++|.+++.  .++
T Consensus        26 diis~vef~---~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   26 DIISAVEFD---HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             cceeeEEee---cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            457889999   899999999999999988533211     11223323            24567788877654  566


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      ....|.++++|.
T Consensus       103 lstNdktiKlWK  114 (433)
T KOG1354|consen  103 LSTNDKTIKLWK  114 (433)
T ss_pred             EecCCcceeeee
Confidence            777899999983

>KOG4714|consensus

Probab=96.92  E-value=0.0028  Score=35.97  Aligned_cols=40  Identities=13%  Similarity=0.142  Sum_probs=35.2

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD   48 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (88)
                      +...++.|+.++..+-|+|  .+++.|+++++||.+..||..
T Consensus       215 p~S~l~ahk~~i~eV~FHp--k~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  215 PVSLLKAHKAEIWEVHFHP--KNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             hHHHHHHhhhhhhheeccC--CCchheeEecCCCcEEEEcCC
Confidence            4455677999999999998  899999999999999999876

>KOG2041|consensus

Probab=96.84  E-value=0.012  Score=37.99  Aligned_cols=69  Identities=16%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---------------EEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---------------WIGTFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      ....|+.|+   .+..+++.++.||.+++..+.+..               .-+.+.+|...|..+.|+...+.+-++..
T Consensus        15 vkL~c~~WN---ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   15 VKLHCAEWN---KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             ceEEEEEEc---ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            567899999   788899999999999988654211               01346789999999999998888877788


Q ss_pred             CCeEEEc
Q psy6444          81 DFQAKAL   87 (88)
Q Consensus        81 d~~i~~~   87 (88)
                      +|.|-+|
T Consensus        92 ~GlIiVW   98 (1189)
T KOG2041|consen   92 SGLIIVW   98 (1189)
T ss_pred             CceEEEE
Confidence            9999998

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.82  E-value=0.022  Score=38.29  Aligned_cols=66  Identities=11%  Similarity=0.102  Sum_probs=49.7

Q ss_pred             EEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC--------------CCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444          19 VHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG--------------HKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ..++++   ++|..+++-..++.|.+|+..++... .+.+              .......++++++++.+++-+.++.|
T Consensus       807 ~Gvavd---~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        807 LGVLCA---KDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             ceeeEe---CCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            356777   78888888888899999998755432 2221              12356788999999988888889999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus       883 rvid  886 (1057)
T PLN02919        883 RYLD  886 (1057)
T ss_pred             EEEE
Confidence            9986

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.80  E-value=0.0083  Score=25.09  Aligned_cols=27  Identities=15%  Similarity=-0.023  Sum_probs=23.8

Q ss_pred             CeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          61 GCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        61 ~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ..|..++|+|...+++.+..+|.+.++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~   38 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVY   38 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEE
Confidence            458899999999999999999998765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.66  E-value=0.029  Score=34.06  Aligned_cols=71  Identities=10%  Similarity=-0.124  Sum_probs=42.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcE--E-EEEeCCCC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYF--L-ISACKDGK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      ++...+.+..........+|+   |+|+.  + +....++.  |.+.++..+.. ..+....+.....+|+|||+.++-.
T Consensus       173 dG~~~~~lt~~~~~~~sP~wS---PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~~g~~~~p~wSPDG~~Laf~  248 (428)
T PRK01029        173 DGQNLRPLTQEHSLSITPTWM---HIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILALQGNQLMPTFSPRKKLLAFI  248 (428)
T ss_pred             CCCCceEcccCCCCcccceEc---cCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecCCCCccceEECCCCCEEEEE
Confidence            344444555555667788999   78864  3 23444443  55667765543 2222233344567999999888743

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.59  E-value=0.07  Score=32.41  Aligned_cols=73  Identities=12%  Similarity=-0.016  Sum_probs=43.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcE-EEEEeCC---CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-Ee
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYF-LISACKD---GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SG   78 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~   78 (88)
                      ++...+.+.... ......|+   ++|+. ++..+..   ..+.++++.+++... +....+......|+||+..++ +.
T Consensus       177 dg~~~~~~~~~~-~~~~p~wS---pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~  251 (419)
T PRK04043        177 TLTYQKVIVKGG-LNIFPKWA---NKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTM  251 (419)
T ss_pred             CCCceeEEccCC-CeEeEEEC---CCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEE
Confidence            344344344333 67788999   78874 5544433   347777887665433 333445556678999998775 44


Q ss_pred             cCC
Q psy6444          79 AAD   81 (88)
Q Consensus        79 ~~d   81 (88)
                      ..+
T Consensus       252 ~~~  254 (419)
T PRK04043        252 APK  254 (419)
T ss_pred             ccC
Confidence            333

>KOG1240|consensus

Probab=96.57  E-value=0.041  Score=37.50  Aligned_cols=71  Identities=13%  Similarity=0.063  Sum_probs=50.9

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCC---CCeEEEec--CCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKD---ASKAASGA--ADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---~~~~~~~~--~d~~i~~~~   88 (88)
                      .+.|..++.+   +.++|++.|...|.+.+||++-+..+..+.. +...+.++..+|-   ....++++  ..+.+.+|+
T Consensus      1195 hG~vTSi~id---p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1195 HGLVTSIVID---PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             ccceeEEEec---CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            4778999999   7899999999999999999987766655532 4466666666653   23444433  456677775

>KOG1354|consensus

Probab=96.57  E-value=0.029  Score=33.26  Aligned_cols=69  Identities=14%  Similarity=0.214  Sum_probs=50.1

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-CCEEEEecCC------------CCeE---EEEEECCCCCeEEEec
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-GDWIGTFEGH------------KGCV---WGVDINKDASKAASGA   79 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~i---~~~~~~~~~~~~~~~~   79 (88)
                      ..|.++.|+   .+|+++.+-.. -++++||+.. .+.+..++.|            ..+|   ...+|+.++..+.+|+
T Consensus       273 sSISDvKFs---~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs  348 (433)
T KOG1354|consen  273 SSISDVKFS---HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS  348 (433)
T ss_pred             hhhhceEEc---cCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc
Confidence            567889999   89999887764 3699999853 3444444332            2333   4568898888999999


Q ss_pred             CCCeEEEcC
Q psy6444          80 ADFQAKALK   88 (88)
Q Consensus        80 ~d~~i~~~~   88 (88)
                      .....++++
T Consensus       349 y~n~frvf~  357 (433)
T KOG1354|consen  349 YNNVFRVFN  357 (433)
T ss_pred             ccceEEEec
Confidence            988888874

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.40  E-value=0.088  Score=31.79  Aligned_cols=60  Identities=17%  Similarity=0.003  Sum_probs=38.4

Q ss_pred             CCCEEEEEEEecCCCCcEEE-EEeCCC--CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444          15 TRPVVHLAFSDITESGYFLI-SACKDG--KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      .+.+....|+   ++|+.++ +...++  .+.++++.++.. ..+..+........|+|++..++-.
T Consensus       242 ~g~~~~~~~S---pDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~  304 (430)
T PRK00178        242 EGLNGAPAWS---PDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFT  304 (430)
T ss_pred             CCCcCCeEEC---CCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEE
Confidence            3444568899   7887766 455555  466778876553 3344444445567899999877643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.39  E-value=0.026  Score=36.83  Aligned_cols=63  Identities=13%  Similarity=0.162  Sum_probs=45.4

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE-EEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ...|++-    .....++.|+.+|.|++|+-. +.. -..+.+-...|.+++.+.||++++..|....+
T Consensus       579 ~Fs~~aT----t~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLl  642 (794)
T PF08553_consen  579 NFSCFAT----TEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLL  642 (794)
T ss_pred             CceEEEe----cCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEE
Confidence            3555543    345688999999999999843 332 23355667899999999999999877665444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.37  E-value=0.088  Score=32.20  Aligned_cols=58  Identities=17%  Similarity=0.035  Sum_probs=37.4

Q ss_pred             CEEEEEEEecCCCCcEEE-EEeCCCC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444          17 PVVHLAFSDITESGYFLI-SACKDGK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      ......|+   ++|+.++ +...++.  +.++++.++.. ..+..+........|+|++..++..
T Consensus       263 ~~~~~~wS---PDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~  323 (448)
T PRK04792        263 INGAPRFS---PDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFT  323 (448)
T ss_pred             CcCCeeEC---CCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEE
Confidence            34467899   7898665 4555665  55667765543 4444444455677899999977643

>KOG1912|consensus

Probab=96.35  E-value=0.023  Score=37.05  Aligned_cols=83  Identities=13%  Similarity=0.037  Sum_probs=57.1

Q ss_pred             ceeEEecCCCCCEEEEEEEec-------C-C-CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC---CC-
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDI-------T-E-SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK---DA-   72 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~-------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-   72 (88)
                      +.+++++-|...|..++|.|.       + + ..-.++++.-.|.|.+||+..+..+..+..+...+..+.|-+   +. 
T Consensus        46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr  125 (1062)
T KOG1912|consen   46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR  125 (1062)
T ss_pred             hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence            456677889999999999864       1 1 123466777789999999987777777777777777776654   33 


Q ss_pred             CeEEEecCCCeEEEcC
Q psy6444          73 SKAASGAADFQAKALK   88 (88)
Q Consensus        73 ~~~~~~~~d~~i~~~~   88 (88)
                      ..++.-....++-+||
T Consensus       126 d~LlaIh~ss~lvLwn  141 (1062)
T KOG1912|consen  126 DVLLAIHGSSTLVLWN  141 (1062)
T ss_pred             heeEEecCCcEEEEEE
Confidence            2444444556677763

>KOG3617|consensus

Probab=96.32  E-value=0.0056  Score=40.14  Aligned_cols=67  Identities=13%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      +.+++|+   |..-.++++..-+.+.+|...+.+.-.....|...|..+.|+++|..+.++-.-+.+.+|
T Consensus        62 atSLCWH---pe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lw  128 (1416)
T KOG3617|consen   62 ATSLCWH---PEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLW  128 (1416)
T ss_pred             hhhhccC---hHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEE
Confidence            4457888   566677888888889999876554433345688999999999999999998888888887

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.28  E-value=0.023  Score=23.34  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=25.2

Q ss_pred             CCEEEEEEEecCCCC--cEEEEEeCCCCEEEEECCC
Q psy6444          16 RPVVHLAFSDITESG--YFLISACKDGKPMLRQGDT   49 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   49 (88)
                      +.+.++.|+|  ..+  ++|+-+=..+.+.++|.++
T Consensus         1 GAvR~~kFsP--~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSP--EPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCC--CCCcccEEEEEccCCeEEEEEccc
Confidence            4688999996  555  6777777778899999975

It contains a characteristic DLL sequence motif.

>KOG0882|consensus

Probab=96.19  E-value=0.028  Score=34.43  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=56.3

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC------CCE---------EEEecCCCCeEEEEEECCCCCeEEE
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT------GDW---------IGTFEGHKGCVWGVDINKDASKAAS   77 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~   77 (88)
                      -|..+|.++.+.   +.+....+....|.|..|....      .+.         +..+...+....++.++|++.++.+
T Consensus       142 lH~sPV~~i~y~---qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist  218 (558)
T KOG0882|consen  142 LHFSPVKKIRYN---QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST  218 (558)
T ss_pred             cccCceEEEEee---ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence            388999999999   7899999999999999998752      111         1122334566678899999999999


Q ss_pred             ecCCCeEEEc
Q psy6444          78 GAADFQAKAL   87 (88)
Q Consensus        78 ~~~d~~i~~~   87 (88)
                      -+.|..+|++
T Consensus       219 l~~DrkVR~F  228 (558)
T KOG0882|consen  219 LNPDRKVRGF  228 (558)
T ss_pred             cCcccEEEEE
Confidence            8899998876

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.19  E-value=0.14  Score=34.31  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=48.6

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEE----ECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLR----QGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ...|..+.|-   ++.+-++.+..+|.+.+.    +.... .+.....-...|.+++||||...++-...++++.+
T Consensus        75 ~~~ivs~~yl---~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~  146 (928)
T PF04762_consen   75 NDKIVSFQYL---ADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLL  146 (928)
T ss_pred             CCcEEEEEec---cCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEE
Confidence            3568888888   688888888989998887    33222 22222334568999999999999987776666543

>KOG4532|consensus

Probab=96.19  E-value=0.1  Score=30.11  Aligned_cols=56  Identities=14%  Similarity=0.023  Sum_probs=41.7

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE-----EEecCCCCeEEEEEECCCCC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI-----GTFEGHKGCVWGVDINKDAS   73 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~   73 (88)
                      +..-.+..|+   .....++.+..|+++.+||++.-...     ..-..|.+.++...|++.|.
T Consensus       203 ~D~gF~~S~s---~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  203 SDHGFYNSFS---ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             CCCceeeeec---cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            3446678888   77788999999999999999753321     22234788999999997554

>KOG1275|consensus

Probab=96.19  E-value=0.094  Score=34.93  Aligned_cols=53  Identities=17%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      .+++.+++|...|.|.+.|..+.+.++.+..|.+.+..+  .-+|+.+++++...
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~  237 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSM  237 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeeccc
Confidence            468899999999999999999889999999999988754  55688898876543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.14  E-value=0.12  Score=30.42  Aligned_cols=68  Identities=13%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             CEEEEEEEecCCCCcEEEEEeC-CCCEEEEECCC--CC--EEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444          17 PVVHLAFSDITESGYFLISACK-DGKPMLRQGDT--GD--WIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL   87 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~   87 (88)
                      ....+.++   ++|++++.... ...|.+|++..  +.  .+..+.......+.+.++|++++++.+. .++.+.+|
T Consensus       246 ~~~~i~is---pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  246 APAEIAIS---PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             SEEEEEE----TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             CceeEEEe---cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            56788899   79988776554 45688999832  33  3333443345578899999999888665 55667665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314|consensus

Probab=96.10  E-value=0.06  Score=33.89  Aligned_cols=63  Identities=16%  Similarity=0.144  Sum_probs=45.3

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeC-----------CCCEEEEECCCCCEEEEecC--CCCeEE-EEEECCCCCeEEEecCC
Q psy6444          16 RPVVHLAFSDITESGYFLISACK-----------DGKPMLRQGDTGDWIGTFEG--HKGCVW-GVDINKDASKAASGAAD   81 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~~~i~-~~~~~~~~~~~~~~~~d   81 (88)
                      ..|..+.|+   |+..+|++-+.           ...+++||+.+|...+.+..  ....++ -.+||+|..+++....+
T Consensus       250 p~Vq~idfS---P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~  326 (698)
T KOG2314|consen  250 PGVQFIDFS---PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN  326 (698)
T ss_pred             CCceeeecC---CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc
Confidence            457788999   78889887543           24689999999987666654  333333 35899999998865543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.07  E-value=0.043  Score=31.51  Aligned_cols=29  Identities=10%  Similarity=0.038  Sum_probs=26.7

Q ss_pred             CCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          60 KGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        60 ~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...|..+.++|++..+++...+|.|.+|+
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence            57889999999999999999999999995

>KOG3621|consensus

Probab=95.96  E-value=0.037  Score=35.41  Aligned_cols=67  Identities=16%  Similarity=0.058  Sum_probs=48.8

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE---E---EEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW---I---GTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +.+.....+   .....++.++..+.|.++.+..+..   .   ..-+.|...|++++|++++..+.+|-..|.+-
T Consensus        77 ~~~~~~~vs---~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~  149 (726)
T KOG3621|consen   77 GITCVRSVS---SVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVV  149 (726)
T ss_pred             ceEEEEEec---chhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEE
Confidence            344445566   6778888899999999997765321   1   11234678999999999999999988777754

>KOG4640|consensus

Probab=95.89  E-value=0.083  Score=33.60  Aligned_cols=59  Identities=19%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             eEEecCCCCCEE-EEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEEC
Q psy6444           8 PLTCSGHTRPVV-HLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDIN   69 (88)
Q Consensus         8 ~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~   69 (88)
                      +-++.-+...+. +++|.   ++|+.++.|.+||.|.+.|+..+..+..... ....|..+.|.
T Consensus        54 lwtip~p~~~v~~sL~W~---~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   54 LWTIPIPGENVTASLCWR---PDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eEeccCCCCccceeeeec---CCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence            334444555566 99999   7999999999999999999988876655321 22344444444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.41  E-value=0.35  Score=30.27  Aligned_cols=70  Identities=19%  Similarity=0.184  Sum_probs=53.2

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCC-CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDG-KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      +|.+.|.-..+.   .+.+.++.+..|+ .+-+++...++ ...+...-+.|.++..+++|..++.+.....+.+
T Consensus       357 ~~~~~VrY~r~~---~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         357 GKKGGVRYRRIQ---VDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             CCCCceEEEEEc---cCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence            456667777776   6777888899998 68899987544 4667777789999999999998877766555544

>KOG1275|consensus

Probab=95.40  E-value=0.12  Score=34.49  Aligned_cols=41  Identities=12%  Similarity=0.058  Sum_probs=30.4

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCC---------CCEEEEECCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKD---------GKPMLRQGDT   49 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~   49 (88)
                      .-+.+.++.+|++.+.+++.     .|+.+++++..         ..+++||++.
T Consensus       206 s~~~iht~~aHs~siSDfDv-----~GNlLitCG~S~R~~~l~~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  206 SFETIHTFDAHSGSISDFDV-----QGNLLITCGYSMRRYNLAMDPFVKVYDLRM  255 (1118)
T ss_pred             cCceeeeeeccccceeeeec-----cCCeEEEeecccccccccccchhhhhhhhh
Confidence            34578889999999987765     58999988874         3456777653

>KOG4649|consensus

Probab=95.31  E-value=0.22  Score=28.85  Aligned_cols=59  Identities=22%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      |++++.++.++.+.+.++.++..+..+.....-=......+++..+.++++|+.....|
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD  121 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALD  121 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEec
Confidence            55677788888888888888876655543211111123466788888999998876544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.31  E-value=0.32  Score=29.13  Aligned_cols=67  Identities=10%  Similarity=0.054  Sum_probs=46.6

Q ss_pred             EEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEec-CCCeEE
Q psy6444          18 VVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGA-ADFQAK   85 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-~d~~i~   85 (88)
                      ..-++++   ++++.++...          ....+.++|..+.+.+..+.. ...++.+++++++. ++.... .++.+.
T Consensus       250 ~q~ia~~---~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~Vs  325 (352)
T TIGR02658       250 WQQVAYH---RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLY  325 (352)
T ss_pred             ceeEEEc---CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence            3347888   6776666532          113588889888888777764 35788999999999 766554 566676


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +.|
T Consensus       326 ViD  328 (352)
T TIGR02658       326 IFD  328 (352)
T ss_pred             EEE
Confidence            654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2395|consensus

Probab=95.24  E-value=0.31  Score=30.83  Aligned_cols=57  Identities=11%  Similarity=0.092  Sum_probs=43.4

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      +....++.++.+|.|++|+-.....-..+.+-...|.++..+.+|.++++.|..-.+
T Consensus       439 T~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLl  495 (644)
T KOG2395|consen  439 TESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLL  495 (644)
T ss_pred             cCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEE
Confidence            344688899999999999863223334567778899999999999999877765443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.91  E-value=0.78  Score=31.49  Aligned_cols=67  Identities=16%  Similarity=0.063  Sum_probs=44.7

Q ss_pred             EEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEE-------------ecC--------CCCeEEEEEECCCCCeEE
Q psy6444          19 VHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGT-------------FEG--------HKGCVWGVDINKDASKAA   76 (88)
Q Consensus        19 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--------~~~~i~~~~~~~~~~~~~   76 (88)
                      ..++++   ++++ .+++-..++.|.+|+..++.....             +..        .......+++++++..++
T Consensus       743 ~GIavs---pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV  819 (1057)
T PLN02919        743 SGISLS---PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV  819 (1057)
T ss_pred             cEEEEe---CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence            457888   6776 555666678899999876542110             000        011235778899999888


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      +-..++.|++||
T Consensus       820 ADs~N~rIrviD  831 (1057)
T PLN02919        820 ADSYNHKIKKLD  831 (1057)
T ss_pred             EECCCCEEEEEE
Confidence            888889999885

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.85  E-value=0.18  Score=29.84  Aligned_cols=71  Identities=18%  Similarity=0.301  Sum_probs=47.8

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-E----EEEecCC------------CCeEEEEEECCCCC--eE
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-W----IGTFEGH------------KGCVWGVDINKDAS--KA   75 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~------------~~~i~~~~~~~~~~--~~   75 (88)
                      ...+.++.|.   ..|.++++|.+.|.+.+|.-.... +    ...+++|            ...|..+.|..++.  .+
T Consensus        26 ad~ItaVefd---~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          26 ADKITAVEFD---ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cceeeEEEec---cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            3568889999   899999999999999988644322 1    1123333            23566777755432  55


Q ss_pred             EEecCCCeEEEcC
Q psy6444          76 ASGAADFQAKALK   88 (88)
Q Consensus        76 ~~~~~d~~i~~~~   88 (88)
                      +....|.+|++|.
T Consensus       103 LlstNdktiKlWK  115 (460)
T COG5170         103 LLSTNDKTIKLWK  115 (460)
T ss_pred             EEecCCceeeeee
Confidence            5667889999993

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.71  E-value=0.44  Score=29.45  Aligned_cols=50  Identities=22%  Similarity=0.090  Sum_probs=32.8

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      |..++..+.+ .+.+||..++..++.+...  .|..+.|++++.+++-.+.+.
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~  166 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS  166 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe
Confidence            6666655544 7999999999988888864  488899999999888766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=94.39  E-value=0.74  Score=28.95  Aligned_cols=70  Identities=7%  Similarity=-0.049  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEE--EeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC---eEEEc
Q psy6444          13 GHTRPVVHLAFSDITESGYFLIS--ACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF---QAKAL   87 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~---~i~~~   87 (88)
                      +.+++|....|.   +.++.++.  |-....+.+++++ +.....+...  .-..+.|+|.+++++.++.|.   .+.+|
T Consensus       272 ~~~~pVhdf~W~---p~S~~F~vi~g~~pa~~s~~~lr-~Nl~~~~Pe~--~rNT~~fsp~~r~il~agF~nl~gni~i~  345 (561)
T COG5354         272 DLKDPVHDFTWE---PLSSRFAVISGYMPASVSVFDLR-GNLRFYFPEQ--KRNTIFFSPHERYILFAGFDNLQGNIEIF  345 (561)
T ss_pred             cccccceeeeec---ccCCceeEEecccccceeecccc-cceEEecCCc--ccccccccCcccEEEEecCCccccceEEe
Confidence            557899999999   56654443  3455678888886 4443443332  224456788888888776653   45555


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       346 ~  346 (561)
T COG5354         346 D  346 (561)
T ss_pred             c
Confidence            3

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.17  E-value=0.51  Score=28.98  Aligned_cols=79  Identities=16%  Similarity=0.068  Sum_probs=45.8

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEE-eC--C-CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-Eec
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISA-CK--D-GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGA   79 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~   79 (88)
                      +...+.+......+....|+   +++..++.. -.  . ..+.++++..+....... ..+.-...+|+|+|+.++ +..
T Consensus       182 g~~~~~l~~~~~~~~~p~ws---~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~  257 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWS---PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSS  257 (425)
T ss_pred             CcceeEecccCcceeccccC---cCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEEC
Confidence            34444455555667778888   677654433 11  2 347777887666433332 222334458999999886 666


Q ss_pred             CCCeEEEc
Q psy6444          80 ADFQAKAL   87 (88)
Q Consensus        80 ~d~~i~~~   87 (88)
                      .|+...+|
T Consensus       258 rdg~~~iy  265 (425)
T COG0823         258 RDGSPDIY  265 (425)
T ss_pred             CCCCccEE
Confidence            77665443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=94.02  E-value=0.75  Score=27.62  Aligned_cols=63  Identities=13%  Similarity=0.051  Sum_probs=43.3

Q ss_pred             EEecCCCCcEEEEEeC----------CCCEEEEECCCCCEEEEecCCC-------CeEEEEEECCCCCeEEEecC--CCe
Q psy6444          23 FSDITESGYFLISACK----------DGKPMLRQGDTGDWIGTFEGHK-------GCVWGVDINKDASKAASGAA--DFQ   83 (88)
Q Consensus        23 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~--d~~   83 (88)
                      ++   ++++.++.+..          +..+.+||..+.+.+..+..-.       ......+++++++++.....  +..
T Consensus        53 ~s---pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~  129 (352)
T TIGR02658        53 VA---SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA  129 (352)
T ss_pred             EC---CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCE
Confidence            67   78877766555          5689999999988887776421       12235688999998875552  456


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +.+.|
T Consensus       130 V~VvD  134 (352)
T TIGR02658       130 VGVVD  134 (352)
T ss_pred             EEEEE
Confidence            66543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.00  E-value=0.82  Score=27.99  Aligned_cols=59  Identities=15%  Similarity=0.132  Sum_probs=35.1

Q ss_pred             CCCCEEEEEEEecCCCCcEEE-EEeCCC--CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE
Q psy6444          14 HTRPVVHLAFSDITESGYFLI-SACKDG--KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA   76 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   76 (88)
                      ..+.....+|+   ++|+.++ +...++  .+.++++..+.. ..+...........|+|||+.++
T Consensus       231 ~~g~~~~~~~S---PDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~  292 (419)
T PRK04043        231 SQGMLVVSDVS---KDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIV  292 (419)
T ss_pred             CCCcEEeeEEC---CCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEE
Confidence            34455667899   7886554 444444  466667665553 33433333234558999998765

>KOG4190|consensus

Probab=93.98  E-value=0.15  Score=32.47  Aligned_cols=77  Identities=19%  Similarity=0.230  Sum_probs=46.2

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-----CCCeEEEEEECCCCCeEE-Eec
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-----HKGCVWGVDINKDASKAA-SGA   79 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~-~~~   79 (88)
                      ....+++.|+.++..+.|-   .+-+.+++  .|+-+.+||.--++.+..+..     ..+.|.++. +.+...++ .++
T Consensus       775 aCQfTY~aHkk~i~~igfL---~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcs  848 (1034)
T KOG4190|consen  775 ACQFTYQAHKKPIHDIGFL---ADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCS  848 (1034)
T ss_pred             eeeeEhhhccCcccceeee---eccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeecc
Confidence            3567888999999999997   55555554  468899999766665543322     223333332 22333333 334


Q ss_pred             CCCeEEEcC
Q psy6444          80 ADFQAKALK   88 (88)
Q Consensus        80 ~d~~i~~~~   88 (88)
                      ...+++++|
T Consensus       849 aeSTVKl~D  857 (1034)
T KOG4190|consen  849 AESTVKLFD  857 (1034)
T ss_pred             chhhheeee
Confidence            555666654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.21  E-value=1.2  Score=27.27  Aligned_cols=46  Identities=11%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          41 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .|.+|+.. |..+..+....+.+..+.|+.+.. ++....||.++++|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~  107 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYD  107 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEe
Confidence            47788764 777888777668999999988544 55667899998875

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444|consensus

Probab=93.21  E-value=0.6  Score=26.37  Aligned_cols=58  Identities=10%  Similarity=-0.026  Sum_probs=35.7

Q ss_pred             cEEEEEeCCCCEEEEECCCCCEEEEecCCC-CeEEEEEECCCCCeEEEe--cCCCeEEEcC
Q psy6444          31 YFLISACKDGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASG--AADFQAKALK   88 (88)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~d~~i~~~~   88 (88)
                      .+...+..++.++-|.+..++.+.....|. ........+..+..+..+  +.|..++.|+
T Consensus       115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence            366677788889888887777665555554 233333334444555544  6777777775

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=93.16  E-value=1.1  Score=26.81  Aligned_cols=67  Identities=13%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCC-CEEEEECCCCCEEEE---ecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444          18 VVHLAFSDITESGYFLISACKDG-KPMLRQGDTGDWIGT---FEGHKGCVWGVDINKDASKAASGA-ADFQAKAL   87 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~   87 (88)
                      +....+.   |+++.++...... .+.+|++..+.....   .......-+++.|+|++.+....+ -+++|.+|
T Consensus       147 ~H~a~~t---P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~  218 (346)
T COG2706         147 VHSANFT---PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVL  218 (346)
T ss_pred             cceeeeC---CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEE
Confidence            6777788   7898888776643 488888886653211   112345568899999999765443 56677766

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=93.05  E-value=0.094  Score=30.95  Aligned_cols=68  Identities=12%  Similarity=0.091  Sum_probs=43.1

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC------EEE----------EecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGD------WIG----------TFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      +....|+|  ..-..+-..+..|.|++.|++...      .+.          -+.+-.+.|..+.|++.|+++++... 
T Consensus       224 ItSaeFhp--~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-  300 (460)
T COG5170         224 ITSAEFHP--EMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-  300 (460)
T ss_pred             HhhcccCH--hHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-
Confidence            45566774  333555566667899998886321      111          11223466778899999999886432 


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      -++++||
T Consensus       301 ltvkiwD  307 (460)
T COG5170         301 LTVKIWD  307 (460)
T ss_pred             ceEEEEe
Confidence            4688886

>KOG2079|consensus

Probab=92.87  E-value=0.19  Score=34.11  Aligned_cols=61  Identities=18%  Similarity=0.116  Sum_probs=44.3

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCC-CEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..+-+++.++..|.+...|.... .+...-....+.+.+++|+.+|..+..|-.+|.+.+||
T Consensus        97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D  158 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWD  158 (1206)
T ss_pred             eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEE
Confidence            34567788888888887776432 11122233457899999999999998888999999997

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=92.85  E-value=0.63  Score=23.23  Aligned_cols=67  Identities=15%  Similarity=0.088  Sum_probs=40.0

Q ss_pred             EEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      |.++++.....+| ..|+.++.|..|++|+-  ...+..+... ..+..+.-... ..++-+-.+|++-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence            3444444311344 67889999999999864  4555555544 34555444433 4566666777776653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.66  E-value=1.1  Score=26.72  Aligned_cols=56  Identities=11%  Similarity=0.087  Sum_probs=37.8

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEE-EEEECCCCCeEEEecCCCeEEEc
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVW-GVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ++.++.++.++.+.+++..+++.+..+..+...+. ...+. ++ .+..++.|+.+..+
T Consensus       320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       320 GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            55778888899999999988988877765543332 22222 23 45567788887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=92.58  E-value=0.71  Score=29.29  Aligned_cols=30  Identities=13%  Similarity=-0.032  Sum_probs=26.8

Q ss_pred             CCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          59 HKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        59 ~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ....+.+.+++|+...++.|+.|+++.+||
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            456788889999999999999999999986

>KOG2314|consensus

Probab=92.44  E-value=0.66  Score=29.62  Aligned_cols=60  Identities=15%  Similarity=0.158  Sum_probs=39.4

Q ss_pred             EEEEEEEecCCCCcEEEEEeC---CCCEEEEECCCCCEE-EEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444          18 VVHLAFSDITESGYFLISACK---DGKPMLRQGDTGDWI-GTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ...+.|+   |.|++++.+..   .+.+.++|....... .....| .....+.|.|.|+++.+++..
T Consensus       495 ~N~vfws---PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  495 ANTVFWS---PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             cceEEEc---CCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeeh
Confidence            4457889   79998876544   567889887642211 112223 345678999999999876543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=92.15  E-value=2  Score=29.24  Aligned_cols=63  Identities=19%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             EEEEEecCCCCcEEEEEeC---CCCEEEEECCCCCEEEEec----CCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          20 HLAFSDITESGYFLISACK---DGKPMLRQGDTGDWIGTFE----GHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      +++|-   |.|+++++.-.   ...|.+|. ++|-.-..|.    .....+..+.|+.++..++....|. +.+|
T Consensus       261 ~l~Wr---PsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW  330 (928)
T PF04762_consen  261 ALSWR---PSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW  330 (928)
T ss_pred             CccCC---CCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence            57888   79999887655   23466665 3454433332    3456789999999999888765544 7776

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.00  E-value=1.1  Score=28.65  Aligned_cols=56  Identities=9%  Similarity=0.150  Sum_probs=41.6

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ....+++.++..|.+++||-...+.-..+.+-...|.++..+.+|.++++.|..-.
T Consensus       571 TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yl  626 (776)
T COG5167         571 TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYL  626 (776)
T ss_pred             ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceE
Confidence            44568899999999999985433333445666778999999999998887776543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=91.93  E-value=1.6  Score=25.83  Aligned_cols=67  Identities=12%  Similarity=0.050  Sum_probs=44.3

Q ss_pred             EEEEEEEecCCCCcEEEEEeCC----CCEEEEECCCC--C--EEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444          18 VVHLAFSDITESGYFLISACKD----GKPMLRQGDTG--D--WIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL   87 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~   87 (88)
                      ...+.++   ++++.+++....    +.+..|.+...  .  .+............+++++++.+++.+. .++.+.++
T Consensus        39 Ps~l~~~---~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   39 PSWLAVS---PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             ECCEEE----TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CceEEEE---eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence            4456777   788888888773    57887877643  2  3333433445567789999999888765 56666654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1912|consensus

Probab=91.87  E-value=2.7  Score=28.28  Aligned_cols=77  Identities=12%  Similarity=0.059  Sum_probs=48.8

Q ss_pred             eEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQA   84 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i   84 (88)
                      +..++.|..++.++.|-+...+. ..++.-.....+.+|+..+|...-+.........++.+.| +.+.+..-+..|.+
T Consensus       102 ~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v  180 (1062)
T KOG1912|consen  102 INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV  180 (1062)
T ss_pred             hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence            34456677788888887644555 5566666667899999888887666665555555566666 44444333333433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.78  E-value=2  Score=26.52  Aligned_cols=52  Identities=15%  Similarity=0.190  Sum_probs=40.5

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG   61 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (88)
                      ....+.+....+..+..+   |.+.+.+....-|.|.++|+..+..++.++|...
T Consensus       299 ~r~~l~D~~R~~~~i~~s---P~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  299 MRFGLPDSKREGESICLS---PSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             eEEeeccCCceEEEEEEC---CCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            345566666778889999   6788888877778999999998887777777543

>KOG4497|consensus

Probab=91.77  E-value=1.8  Score=26.06  Aligned_cols=67  Identities=6%  Similarity=-0.004  Sum_probs=47.5

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ...+|....|+   |....++.+.....+.+|... +.......+..-.|..+.|...|..++-.++|...
T Consensus       360 Qk~piraf~Wd---P~~prL~vctg~srLY~W~ps-g~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  360 QKHPIRAFEWD---PGRPRLVVCTGKSRLYFWAPS-GPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             hccceeEEEeC---CCCceEEEEcCCceEEEEcCC-CceEEecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence            35788999999   455555555545568899765 55444444455678899999999998888888653

>KOG0882|consensus

Probab=91.68  E-value=0.072  Score=32.75  Aligned_cols=71  Identities=21%  Similarity=0.340  Sum_probs=50.2

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC--CC-EEEEecCCCCeEEEEEECCCCCeEEEecC-CCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT--GD-WIGTFEGHKGCVWGVDINKDASKAASGAA-DFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-d~~i~~~~   88 (88)
                      |+..+..+.-    .-.+.+.+++-||.+++|-...  +. -+..+..|-..+.+++.+.++.++.|.+. |..++++|
T Consensus         8 hrd~i~hv~~----tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFP----TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEee----ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            5566666533    5678999999999999996542  11 22334456667777788888888888776 88888765

>KOG1920|consensus

Probab=91.45  E-value=3.6  Score=28.86  Aligned_cols=67  Identities=10%  Similarity=0.010  Sum_probs=48.2

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ..+..+.|.   .+.+-++.+...|.+.+.+..+.. +.....-.+.|.+++|+||...++-....+++.+
T Consensus        69 ~~i~s~~fl---~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~  135 (1265)
T KOG1920|consen   69 DEIVSVQFL---ADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLF  135 (1265)
T ss_pred             cceEEEEEe---cccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence            467778887   778888888888988887665433 2222234578899999999998887776666543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.14  E-value=0.5  Score=18.37  Aligned_cols=28  Identities=7%  Similarity=-0.134  Sum_probs=17.2

Q ss_pred             CCeEEEEEECCCCCeEE-EecCC--CeEEEc
Q psy6444          60 KGCVWGVDINKDASKAA-SGAAD--FQAKAL   87 (88)
Q Consensus        60 ~~~i~~~~~~~~~~~~~-~~~~d--~~i~~~   87 (88)
                      ...-....|+|+|+.++ ++..+  +...+|
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34556778999999876 44455  554444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=91.09  E-value=2.3  Score=26.00  Aligned_cols=77  Identities=13%  Similarity=0.017  Sum_probs=44.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe--cC------CCCeEEEEEECC-----CC-
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF--EG------HKGCVWGVDINK-----DA-   72 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~-   72 (88)
                      +..-+...+++|.+++.+    +-.+++.+..+|.+.+.|.+....+..-  ..      ....+..+.|..     |+ 
T Consensus        78 P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             chhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            444555567999999987    6779999999999999999754444431  11      123444555542     22 


Q ss_pred             --CeEEEecCCCeEEEc
Q psy6444          73 --SKAASGAADFQAKAL   87 (88)
Q Consensus        73 --~~~~~~~~d~~i~~~   87 (88)
                        ..++++...|.+.+|
T Consensus       154 SSi~L~vGTn~G~v~~f  170 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTF  170 (395)
T ss_dssp             EEEEEEEEETTSEEEEE
T ss_pred             cceEEEEEeCCCCEEEE
Confidence              255566666776654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.84  E-value=2.2  Score=25.25  Aligned_cols=67  Identities=12%  Similarity=0.020  Sum_probs=43.2

Q ss_pred             EEEEEecCCCCcEEEEEeCCCC-EEEEECCCCCEEEEecCCCCeEE--EEEECCCCCeEEEecCC-----CeEEEcC
Q psy6444          20 HLAFSDITESGYFLISACKDGK-PMLRQGDTGDWIGTFEGHKGCVW--GVDINKDASKAASGAAD-----FQAKALK   88 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~d-----~~i~~~~   88 (88)
                      .+..+|  ..+..++.+..-|. ..+||..++.....+....+..+  +-.|+++|+++.+.-.|     +.|-|||
T Consensus         9 ~~a~~p--~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    9 GVAAHP--TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ceeeCC--CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            345563  35555555655554 66789888887777665555443  45899999999875433     4566664

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.53  E-value=3.4  Score=26.89  Aligned_cols=65  Identities=8%  Similarity=0.009  Sum_probs=36.3

Q ss_pred             EEEEecCCCCcEEEEEeCCCCEEEEECCC-CCEEEEecCCCCeEEEEEECCCCCeEEEecCCC-eEEEcC
Q psy6444          21 LAFSDITESGYFLISACKDGKPMLRQGDT-GDWIGTFEGHKGCVWGVDINKDASKAASGAADF-QAKALK   88 (88)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~-~i~~~~   88 (88)
                      +.|+   |....++.-.....-.++++.. +.++..-....+.|.+-+|.+||+.++.+-... ...+||
T Consensus       118 CVWH---Pk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  118 CVWH---PKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             cccc---CCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            4566   3444444333222223344432 234444445678999999999999887554333 356776

>KOG1916|consensus

Probab=90.49  E-value=0.58  Score=31.70  Aligned_cols=73  Identities=14%  Similarity=0.072  Sum_probs=43.3

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE-----------EEEEECCCCCeEEEecCCCe
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV-----------WGVDINKDASKAASGAADFQ   83 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ...+..+.|.|...+.-.+..+.+++.+.+........ ..+.+|..++           .--.++|||..++.++.||.
T Consensus       180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~  258 (1283)
T KOG1916|consen  180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS  258 (1283)
T ss_pred             CCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence            34456666766445555666677777777654432111 1122232211           11137999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      ++.|+
T Consensus       259 v~f~Q  263 (1283)
T KOG1916|consen  259 VGFYQ  263 (1283)
T ss_pred             cceee
Confidence            98874

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=90.23  E-value=1.7  Score=26.82  Aligned_cols=63  Identities=22%  Similarity=0.190  Sum_probs=36.9

Q ss_pred             EEEEEEEecCCCCcEEE-EEeCCCCEEE--EECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCeE
Q psy6444          18 VVHLAFSDITESGYFLI-SACKDGKPML--RQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQA   84 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~i   84 (88)
                      ....+|+   ++|+.++ +...++...+  +|+..+. ...+....+.-..-.|+|+|+.++ +....+.-
T Consensus       240 ~~~P~fs---pDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p  306 (425)
T COG0823         240 NGAPAFS---PDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRP  306 (425)
T ss_pred             cCCccCC---CCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCc
Confidence            3457788   6886554 5566666554  4665444 333433333334678999999886 44444443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.62  E-value=4.2  Score=26.63  Aligned_cols=56  Identities=5%  Similarity=-0.058  Sum_probs=37.7

Q ss_pred             EEEEEeCC-CCEEEEECCCCCEEEEec-CCCCeEEEEEE--CCCCCeEEEecCCCeEEEc
Q psy6444          32 FLISACKD-GKPMLRQGDTGDWIGTFE-GHKGCVWGVDI--NKDASKAASGAADFQAKAL   87 (88)
Q Consensus        32 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~~~~~~~~~d~~i~~~   87 (88)
                      .++....+ ..+.+||...+.....-. ...+.|..++|  .|+++.+++.+....+.++
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~  101 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLY  101 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEE
Confidence            33433444 468899998766443322 34577888877  5688888898888887765

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK02888 nitrous-oxide reductase; Validated

Probab=89.57  E-value=4.3  Score=26.60  Aligned_cols=48  Identities=13%  Similarity=0.094  Sum_probs=30.1

Q ss_pred             CCEEEEECCC----C-CEEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEcC
Q psy6444          40 GKPMLRQGDT----G-DWIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKALK   88 (88)
Q Consensus        40 ~~~~~~~~~~----~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~~   88 (88)
                      +.+.+.|..+    + ..+..+. -....+.+.++||+.++..++ .+.++.+.|
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence            4466667665    2 2333333 345668889999999887654 566676654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.99  E-value=2.7  Score=23.51  Aligned_cols=59  Identities=7%  Similarity=0.049  Sum_probs=40.9

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEe-------c-------CCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTF-------E-------GHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      .++.++.....+|.+.+||+.+.+.+..-       .       .....|....++.+|..+++-+. +....|
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y   92 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSY   92 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEe
Confidence            46888999999999999999876643221       1       24466777788888887776542 444444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=88.14  E-value=3.4  Score=23.67  Aligned_cols=67  Identities=12%  Similarity=0.083  Sum_probs=38.1

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC---------CCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH---------KGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ..+..+.++|  ..+.+++-...+..+..+|. .+..+..+.-.         ..+.-.+++.++|..+++. +.+...+
T Consensus       171 ~d~S~l~~~p--~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  171 RDLSGLSYDP--RTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             S---EEEEET--TTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             ccccceEEcC--CCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence            4467888997  67778887777888888884 56655444322         2356789999999877765 4455443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=88.08  E-value=4.1  Score=24.56  Aligned_cols=71  Identities=11%  Similarity=-0.023  Sum_probs=45.7

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCC--CCE--EEEecCCCCeEEEEEECCCCCeEEEec-CCCeEE
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDT--GDW--IGTFEGHKGCVWGVDINKDASKAASGA-ADFQAK   85 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~   85 (88)
                      ..+...-+.|+   ++++.|+++..+   +.+.-|.++.  |+.  +............+++++++++++++. ..+.+.
T Consensus        38 ~~~nptyl~~~---~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          38 ELGNPTYLAVN---PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             ccCCCceEEEC---CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            44566778888   788888877665   5566666654  442  222233334447889999999888776 445565


Q ss_pred             Ec
Q psy6444          86 AL   87 (88)
Q Consensus        86 ~~   87 (88)
                      ++
T Consensus       115 v~  116 (346)
T COG2706         115 VY  116 (346)
T ss_pred             EE
Confidence            53

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.07  E-value=4  Score=25.84  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CCcEEEEEeCCCCEEEEECCCCCEEEEe
Q psy6444          29 SGYFLISACKDGKPMLRQGDTGDWIGTF   56 (88)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (88)
                      +..++++.+.|+.+++|++.++..+...
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            5678999999999999999988875543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.05  E-value=3.8  Score=25.96  Aligned_cols=27  Identities=7%  Similarity=0.051  Sum_probs=19.1

Q ss_pred             eEEEEEECC----CCCeEEEecCCCeEEEcC
Q psy6444          62 CVWGVDINK----DASKAASGAADFQAKALK   88 (88)
Q Consensus        62 ~i~~~~~~~----~~~~~~~~~~d~~i~~~~   88 (88)
                      .....+++.    +..++++.+.|+.+|+||
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~  246 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWS  246 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEE
Confidence            344555555    567888999999999996

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG3621|consensus

Probab=87.09  E-value=5.5  Score=26.38  Aligned_cols=69  Identities=17%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ..+--.+++   ..++.++.|...|.+.+|+-..+. ......+..+.+.....++...+++.++..+.+-++
T Consensus        34 ~~v~lTc~d---st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   34 ARVKLTCVD---ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVF  103 (726)
T ss_pred             ceEEEEEee---cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence            334444455   678899999999999999765443 223333455566666777777777767766766654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.86  E-value=3.2  Score=24.72  Aligned_cols=63  Identities=17%  Similarity=0.059  Sum_probs=37.5

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEE-ecCC----------------CCeEEEEEECCCCCeEEE
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGT-FEGH----------------KGCVWGVDINKDASKAAS   77 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------------~~~i~~~~~~~~~~~~~~   77 (88)
                      ...+....|+   |+|..++.... +.+.+++...+...+. ..+.                -+.-..+-|+|++++++.
T Consensus        42 ~~~~~~~~~s---P~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~  117 (353)
T PF00930_consen   42 PPKLQDAKWS---PDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF  117 (353)
T ss_dssp             ETTBSEEEE----SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred             ccccccceee---cCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence            4567788999   78988887764 5788877655532211 1110                122245779999999986


Q ss_pred             ecCC
Q psy6444          78 GAAD   81 (88)
Q Consensus        78 ~~~d   81 (88)
                      ...|
T Consensus       118 ~~~d  121 (353)
T PF00930_consen  118 LRFD  121 (353)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            5433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=86.70  E-value=4.9  Score=23.98  Aligned_cols=57  Identities=12%  Similarity=-0.052  Sum_probs=29.0

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCC-eEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKG-CVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++.++.+..++.+..++..+++.+-....... .......  .+..+..++.++.+.++|
T Consensus       279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       279 DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence            34555566677777777776665433321111 1111111  234555666777766653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.57  E-value=7.5  Score=25.96  Aligned_cols=68  Identities=16%  Similarity=0.079  Sum_probs=44.6

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC----------CC-EE--EEe--------cCCCCeEEEEEECCC---C
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDT----------GD-WI--GTF--------EGHKGCVWGVDINKD---A   72 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~--~~~--------~~~~~~i~~~~~~~~---~   72 (88)
                      .|..+..+   ++|..++-.+..+...+. ++.          +. .+  +.+        ......|..+.|+|.   +
T Consensus        86 ~v~~i~~n---~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   86 EVHQISLN---PTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eEEEEEEC---CCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            46677788   799999888887654432 221          11 11  111        123457788999996   4


Q ss_pred             CeEEEecCCCeEEEcC
Q psy6444          73 SKAASGAADFQAKALK   88 (88)
Q Consensus        73 ~~~~~~~~d~~i~~~~   88 (88)
                      ..++.-..|+.+|+||
T Consensus       162 ~~l~vLtsdn~lR~y~  177 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYD  177 (717)
T ss_pred             CeEEEEecCCEEEEEe
Confidence            6777778999999986

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1645|consensus

Probab=85.78  E-value=4.1  Score=25.22  Aligned_cols=40  Identities=3%  Similarity=0.044  Sum_probs=28.6

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD   51 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   51 (88)
                      .++..+ ..++.++|.-  .+...++.|..+|.|.+||++..+
T Consensus       230 ssy~a~-~~~wSC~wDl--de~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  230 SSYIAY-NQIWSCCWDL--DERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eheecc-CCceeeeecc--CCcceeEEeccCceEEEEEccCCC
Confidence            333444 5678889984  334678888889999999997543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=84.74  E-value=3.6  Score=20.63  Aligned_cols=65  Identities=18%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEE---CCCCC-eEEEecCCCeEEE
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI---NKDAS-KAASGAADFQAKA   86 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~-~~~~~~~d~~i~~   86 (88)
                      +..+..+.-.    .+..++.+..+|+|-+|+-....+  ..+. +..+.++.+   ..+|. -++++..+|.+-+
T Consensus        42 ~~~v~~L~~~----~~~~F~Y~l~NGTVGvY~~~~RlW--RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   42 TDKVTSLCSL----GGGRFAYALANGTVGVYDRSQRLW--RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ccceEEEEEc----CCCEEEEEecCCEEEEEeCcceee--eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3556666554    457789999999999997633222  2222 233444433   22333 5667878887643

>KOG2114|consensus

Probab=84.66  E-value=4.4  Score=27.47  Aligned_cols=60  Identities=17%  Similarity=0.045  Sum_probs=37.3

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCe-EEEEEECCCCCeEEEecCCC-----eEEEcC
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC-VWGVDINKDASKAASGAADF-----QAKALK   88 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~d~-----~i~~~~   88 (88)
                      +.+..++-|..+|.|.+.+-. -..+..++.+... +..+-...+...+++.+.|.     .+++|+
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~   98 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWD   98 (933)
T ss_pred             CCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEec
Confidence            678889999999998876542 2334677766655 33333222335666655443     477885

>PRK02888 nitrous-oxide reductase; Validated

Probab=83.76  E-value=10  Score=25.03  Aligned_cols=67  Identities=12%  Similarity=-0.066  Sum_probs=44.3

Q ss_pred             EEEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCCE------------EEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444          18 VVHLAFSDITESGYFLISACK-DGKPMLRQGDTGDW------------IGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      ...+.++   ++|++++.++. +..+.+.|+.+...            ...... ...-.+.+|.++|..+-|---|..+
T Consensus       323 PHGV~vS---PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv  398 (635)
T PRK02888        323 PHGVNTS---PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQI  398 (635)
T ss_pred             ccceEEC---CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeeccee
Confidence            3457778   79987765554 77899999876432            222222 2233566888888877777778888


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      -.||
T Consensus       399 ~kwn  402 (635)
T PRK02888        399 VKWN  402 (635)
T ss_pred             EEEe
Confidence            7775

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=82.85  E-value=6.5  Score=22.16  Aligned_cols=48  Identities=15%  Similarity=0.038  Sum_probs=34.3

Q ss_pred             cEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444          31 YFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      +.++.+.....|..|++...  ..+..+.. -+.|..+.++..|+++++--
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence            56655555667999998732  34455553 47888999999999998843

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=82.35  E-value=5.8  Score=25.32  Aligned_cols=58  Identities=19%  Similarity=0.259  Sum_probs=39.2

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCC---------------CEEEEECCCCCEEEEecCCCCe--EE-EEEECCCCCeEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDG---------------KPMLRQGDTGDWIGTFEGHKGC--VW-GVDINKDASKAA   76 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~~~   76 (88)
                      ..|..+.|+   |++.+|.+-...+               .+.+||..++..+..+.+....  .+ .+.|+.+..+.+
T Consensus        72 ~~V~~~~fS---P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A  147 (561)
T COG5354          72 PDVKYLDFS---PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA  147 (561)
T ss_pred             CCceecccC---cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence            456677888   6888888755433               3889999888888777664433  44 566776655444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=82.31  E-value=6.7  Score=21.91  Aligned_cols=69  Identities=19%  Similarity=0.150  Sum_probs=41.9

Q ss_pred             CCEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCC-CC------EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          16 RPVVHLAFSDITESGYFLI-SACKDGKPMLRQGDT-GD------WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ....-++|+   ++++.++ +-+..+.|..+++.. +.      ....+....+..-.+++..+++.+++....+.|.++
T Consensus       134 ~~pNGi~~s---~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  134 GFPNGIAFS---PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF  210 (246)
T ss_dssp             SSEEEEEEE---TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred             ccccceEEC---CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence            334568899   7887665 556666777777642 22      111223333456778888889877776666666655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=81.32  E-value=12  Score=24.36  Aligned_cols=61  Identities=10%  Similarity=0.041  Sum_probs=34.5

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCE-EE-----------EECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKP-ML-----------RQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .....|+   ++|+++........+ .+           .++..+.. ..  ...+.|..++|+|||..++-.. ++.+.
T Consensus       399 ~t~PsWs---pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~  471 (591)
T PRK13616        399 LTRPSWS---LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS--RVPGPISELQLSRDGVRAAMII-GGKVY  471 (591)
T ss_pred             CCCceEC---CCCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh--ccCCCcCeEEECCCCCEEEEEE-CCEEE
Confidence            6678899   788776665433222 12           12221111 11  2245689999999999887543 24443

>KOG4649|consensus

Probab=81.14  E-value=9  Score=22.63  Aligned_cols=49  Identities=18%  Similarity=0.055  Sum_probs=31.8

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEE
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAA   76 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~   76 (88)
                      +++..+..++.|+.....|..+...+.+.+-..+-..+..+.+ ++.+++
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~  152 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA  152 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence            6788999999999998888877766665443323223334455 444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=81.09  E-value=10  Score=25.42  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=29.4

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG   50 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   50 (88)
                      ...|..+.|+|.+.++..++.-..|+.+++|++...
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            356889999976556788998899999999998653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=80.78  E-value=9.3  Score=22.55  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=40.5

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE-----EEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV-----WGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +.++...   .+|.+|+|...-..|.+.+-.+++.+-.+.+..+.-     ...++-++-+.+-....++.|.++|
T Consensus       146 iNsV~~~---~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  146 INSVDKD---DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             eeeeeec---CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence            3445555   688899998887778777877777666665441111     1133444444443445666777765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=80.06  E-value=9.1  Score=22.01  Aligned_cols=74  Identities=11%  Similarity=0.007  Sum_probs=41.0

Q ss_pred             EEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCC-CCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGH-KGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      +.+.+-...++.++|.   ++.+ +++.....+.+..++. .++.++.+.-. .+-.-.+++..++.++++.-.++.+.+
T Consensus        15 ~~l~g~~~e~SGLTy~---pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   15 KPLPGILDELSGLTYN---PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             EE-TT--S-EEEEEEE---TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             eECCCccCCccccEEc---CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            3556666679999999   5655 4555555566666675 47777666433 244556677666766666555666544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-04

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 2  ASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG 61
          + ++ I LT  GH RP+  + ++   + G  L S  KD    +     G+ +GT +GH G
Sbjct: 21 SHMKAIKLT--GHERPLTQVKYN---KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG 75
Query: 62 CVWGVDIN 69
           +W +D++
Sbjct: 76 TIWSIDVD 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.83
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.79
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.78
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.77
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.77
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.77
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.76
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.76
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.76
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.75
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.75
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.75
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.74
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.74
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.74
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.74
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.73
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.73
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.73
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.72
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.72
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.72
2pm7_B	297	Protein transport protein SEC13, protein transport	99.72
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.71
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.71
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.7
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.7
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.7
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.69
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.69
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.69
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.68
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.67
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.67
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.67
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.67
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.67
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.67
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.66
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.66
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.66
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.66
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.66
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.66
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.66
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.65
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.65
2pm7_B	297	Protein transport protein SEC13, protein transport	99.65
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.65
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.64
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.63
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.63
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.63
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.63
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.63
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.63
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.61
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.61
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.6
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.6
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.6
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.6
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.6
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.59
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.58
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.58
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.58
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.57
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.57
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.57
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.57
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.56
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.56
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.56
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.56
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.56
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.55
3jro_A	753	Fusion protein of protein transport protein SEC13	99.55
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.55
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.55
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.55
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.55
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.55
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.54
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.54
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.54
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.54
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.54
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.54
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.53
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.53
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.53
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.52
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.52
3jro_A	753	Fusion protein of protein transport protein SEC13	99.52
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.51
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.51
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.5
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.5
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.5
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.49
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.49
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.48
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.48
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.47
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.46
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.46
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.46
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.46
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.46
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.44
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.44
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.44
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.41
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.41
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.39
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.38
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.36
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.3
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.29
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.22
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.19
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.17
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.15
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.05
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.01
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.99
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.73
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.71
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.66
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.65
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.65
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.64
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.58
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.57
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.52
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.52
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.46
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.42
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.41
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.41
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.41
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.4
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.39
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.37
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.34
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.32
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.31
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.3
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.29
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.29
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.28
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.27
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.25
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.25
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.22
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.19
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.18
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.17
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.14
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.11
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.1
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.08
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.02
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.99
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.91
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.89
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.87
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.57
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.45
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.4
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.3
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.27
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.26
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.21
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.17
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.14
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.07
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.97
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.93
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.93
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.9
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.75
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.74
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.53
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.44
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.44
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.35
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.15
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.91
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	95.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.78
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.47
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	94.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	93.34
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	92.65
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	92.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.6
2ece_A	462	462AA long hypothetical selenium-binding protein;	91.22
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	91.17
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	91.03
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	90.76
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	89.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	88.93
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	88.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	88.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	88.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	88.27
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	88.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	88.01
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	87.62
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	87.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	87.3
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	86.93
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	85.92
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	85.05
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	84.92
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.83
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	83.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	83.32
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	82.96
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	81.86
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	80.94
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	80.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	80.75

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.83  E-value=3e-19  Score=101.52  Aligned_cols=78  Identities=17%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ...+.+|...|.+++|+   ++|+++++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++.++++++.|++|+|
T Consensus       262 ~~~~~~~~~~V~~~~~S---pdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv  338 (365)
T 4h5i_A          262 SKQVTNRFKGITSMDVD---MKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI  338 (365)
T ss_dssp             EEEEESSCSCEEEEEEC---TTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             eeeecCCCCCeEeEEEC---CCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            45677899999999999   89999999999999999999999888875 689999999999999999999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       339 w~  340 (365)
T 4h5i_A          339 IK  340 (365)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.79  E-value=2.7e-18  Score=101.34  Aligned_cols=78  Identities=29%  Similarity=0.409  Sum_probs=72.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ....|++|++.|.+++|+   ++|+++++++.|+.+++|+. +++.+..+.+|...|.+++|+|++.++++++.|+++++
T Consensus         8 e~~~L~GH~~~V~~~a~s---pdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~v   83 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFS---PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL   83 (577)
T ss_dssp             EEEEECCCSSCEEEEEEC---TTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EeeEECCCCCcEEEEEEC---CCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            446799999999999999   89999999999999999995 67888999999999999999999999999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus        84 Wd   85 (577)
T 2ymu_A           84 WN   85 (577)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.78  E-value=1.4e-17  Score=94.31  Aligned_cols=78  Identities=17%  Similarity=0.296  Sum_probs=73.9

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCC-EEEEECCCCCEEEEec-C-CCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGK-PMLRQGDTGDWIGTFE-G-HKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      +..+.+|.+.|.+++|+   +++..+++++.|+. +++||+.++..+..+. + |...|.+++|+|++.++++++.|+++
T Consensus       188 ~~~~~~h~~~v~~~~~s---~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v  264 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLN---RKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTL  264 (355)
T ss_dssp             CEEECCCSSCEEEEEEC---TTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred             cEEEEccCCceEEEEEC---CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEE
Confidence            67889999999999999   79999999999998 9999999999998888 5 89999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus       265 ~iw~  268 (355)
T 3vu4_A          265 HVFE  268 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.77  E-value=1.2e-17  Score=92.94  Aligned_cols=81  Identities=22%  Similarity=0.200  Sum_probs=70.6

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-----EEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-----WIGTFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      ....+|+||++.|.+++|+|  .+++++++++.|+.|++|++....     ....+.+|...|.+++|+|++.++++++.
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCccCCEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            34568999999999999994  346899999999999999986543     45677899999999999999999999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.+++|+
T Consensus       107 d~~i~~~~  114 (340)
T 4aow_A          107 DGTLRLWD  114 (340)
T ss_dssp             TSEEEEEE
T ss_pred             cccceEEe
Confidence            99999885

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.77  E-value=2.3e-17  Score=92.47  Aligned_cols=82  Identities=27%  Similarity=0.341  Sum_probs=76.8

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .+..+..+.+|...|.+++|+   +++..+++++.|+.+++|++.++..+..+.+|...|..++|+|++..+++++.|+.
T Consensus       237 ~~~~~~~~~~h~~~v~~~~~s---p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          237 HANLAGTLSGHASWVLNVAFC---PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             TCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred             CcceeEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence            445677889999999999999   79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       314 i~vwd  318 (321)
T 3ow8_A          314 IHIYD  318 (321)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.77  E-value=1.6e-17  Score=92.80  Aligned_cols=80  Identities=31%  Similarity=0.341  Sum_probs=75.8

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .++..+.+|...|.+++|+   +++..+++++.|+.+++||+.++..+..+.+|...|.+++|+|++..+++++.|++++
T Consensus        56 ~~~~~~~~h~~~v~~~~~s---~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~  132 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLT---ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK  132 (319)
T ss_dssp             EEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             ccceEEeCCcccEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            4577889999999999999   8999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       133 vwd  135 (319)
T 3frx_A          133 VWT  135 (319)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.76  E-value=2.3e-17  Score=92.43  Aligned_cols=82  Identities=26%  Similarity=0.379  Sum_probs=77.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.+|..+|.+++|+   ++++.+++++.|+.+++|++..+..+..+.+|...|..++|+|++.++++++.|++
T Consensus       195 ~~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          195 TGKLLHTLEGHAMPIRSLTFS---PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             TTEEEEEECCCSSCCCEEEEC---TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCcEEEEEcccCCceeEEEEc---CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            466788899999999999999   79999999999999999999988888999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       272 v~iwd  276 (321)
T 3ow8_A          272 VKVWD  276 (321)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.76  E-value=2.3e-17  Score=92.83  Aligned_cols=81  Identities=27%  Similarity=0.287  Sum_probs=75.9

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      +.+...+.+|...|.+++|+   +++..+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|+.+
T Consensus        66 ~~~~~~l~~h~~~V~~~~~~---~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i  142 (343)
T 2xzm_R           66 GIPHKALTGHNHFVSDLALS---QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREI  142 (343)
T ss_dssp             EEEEEEECCCSSCEEEEEEC---SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred             ccccchhccCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence            34567889999999999999   799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus       143 ~~wd  146 (343)
T 2xzm_R          143 KLWN  146 (343)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.76  E-value=5.8e-17  Score=91.20  Aligned_cols=82  Identities=22%  Similarity=0.294  Sum_probs=77.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.+|.+.|.+++|+   +++..+++++.|+.+++||+.++..+..+.+|...|.+++|+|++.++++++.|+.
T Consensus       173 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~  249 (340)
T 1got_B          173 TGQQTTTFTGHTGDVMSLSLA---PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             TTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCcEEEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence            456778899999999999999   79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       250 v~iwd  254 (340)
T 1got_B          250 CRLFD  254 (340)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.75  E-value=5.2e-17  Score=90.23  Aligned_cols=82  Identities=17%  Similarity=0.202  Sum_probs=77.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .+..+..+..|..++.+++|+   ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|++
T Consensus        44 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~  120 (304)
T 2ynn_A           44 TQVEVRSIQVTETPVRAGKFI---ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT  120 (304)
T ss_dssp             TTEEEEEEECCSSCEEEEEEE---GGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             CCceeEEeeccCCcEEEEEEe---CCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe
Confidence            456778888999999999999   79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       121 v~lWd  125 (304)
T 2ynn_A          121 VKLWN  125 (304)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.75  E-value=3.3e-17  Score=96.69  Aligned_cols=81  Identities=32%  Similarity=0.459  Sum_probs=75.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +++.+..+.+|...|.+++|+   ++++++++++.|+.+++|+. +++.+..+.+|.+.|.+++|+|+++++++++.|+.
T Consensus       497 ~~~~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          497 NGQLLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             TSCEEEEEECCSSCEEEEEEC---TTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCEEEEEeCCCCCEEEEEEc---CCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            456788899999999999999   89999999999999999996 57888999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++||
T Consensus       573 i~~Wd  577 (577)
T 2ymu_A          573 VKLWN  577 (577)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99998

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.75  E-value=1.4e-16  Score=88.37  Aligned_cols=82  Identities=26%  Similarity=0.300  Sum_probs=76.3

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ......++.+|...|.+++|+   ++++.+++++.|+.+++|+..++.....+.+|...|..++|+|++.++++++.|+.
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   88 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT   88 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CceeEEEEcccCCcEEEEEEC---CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence            345677889999999999999   79999999999999999999988888899999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus        89 i~vwd   93 (312)
T 4ery_A           89 LKIWD   93 (312)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.74  E-value=5.4e-17  Score=93.37  Aligned_cols=82  Identities=27%  Similarity=0.274  Sum_probs=76.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .+....++.+|...|.+++|+   ++++.+++++.|+.+++|++.....+..+.+|...|.+++|+|++.++++++.|++
T Consensus       139 ~~~~~~~l~~h~~~V~~v~~~---~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~  215 (410)
T 1vyh_C          139 TGDFERTLKGHTDSVQDISFD---HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT  215 (410)
T ss_dssp             TCCCCEEECCCSSCEEEEEEC---TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             CCcEEEEEeccCCcEEEEEEc---CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            456778899999999999999   79999999999999999999988888999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       216 i~~wd  220 (410)
T 1vyh_C          216 IKMWE  220 (410)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.74  E-value=2.6e-17  Score=91.46  Aligned_cols=80  Identities=15%  Similarity=0.166  Sum_probs=75.1

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +..+++.+|...|.+++|+   ++++.+++++.|+.+++|++.++..+..+..|...+..++|++++.++++++.|++++
T Consensus         4 ~~~~~~~~h~~~V~~~~fs---p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFH---PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CCEEEEEEECSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eeEEeecCCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            4567789999999999999   7999999999999999999998888899999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus        81 vwd   83 (304)
T 2ynn_A           81 VFN   83 (304)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.74  E-value=1.8e-17  Score=94.45  Aligned_cols=82  Identities=18%  Similarity=0.204  Sum_probs=76.3

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +....+++.+|.+.|.+++|+   ++++++++++.|+.+++|+..++..+..+..|...|..++|+|++.++++++.|+.
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~s---p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~  131 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWT---PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA  131 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEEC---TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred             eeEEeecccccccEEEEEEEc---CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence            345678899999999999999   79999999999999999999989888999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       132 v~iw~  136 (380)
T 3iz6_a          132 CSIFN  136 (380)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            99995

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.74  E-value=6.2e-17  Score=93.10  Aligned_cols=82  Identities=22%  Similarity=0.285  Sum_probs=76.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .+..+..+.+|...|.++.|+   +++..+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|++
T Consensus       327 ~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          327 TGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             TTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             CCceEEEEECCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            456788889999999999999   79999999999999999999988888999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++|+
T Consensus       404 i~vW~  408 (410)
T 1vyh_C          404 VKVWE  408 (410)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.73  E-value=1.8e-16  Score=94.90  Aligned_cols=82  Identities=30%  Similarity=0.421  Sum_probs=74.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-------CCCCeEEEEEECCCCCeEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-------GHKGCVWGVDINKDASKAA   76 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~   76 (88)
                      +++.+.++.+|...|.+++|+   ++++.+++++.|+.+++|+..++..+..+.       +|.+.|.+++|+|++.+++
T Consensus       179 ~~~~~~~l~~H~~~V~~v~fs---pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~  255 (611)
T 1nr0_A          179 PFKFKSTFGEHTKFVHSVRYN---PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA  255 (611)
T ss_dssp             TBEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             CCeEeeeeccccCceEEEEEC---CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence            345677889999999999999   799999999999999999998888877774       7999999999999999999


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      +++.|+++++||
T Consensus       256 s~s~D~~v~lWd  267 (611)
T 1nr0_A          256 SASADKTIKIWN  267 (611)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EEeCCCeEEEEe
Confidence            999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.73  E-value=8.9e-17  Score=91.14  Aligned_cols=81  Identities=22%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d   81 (88)
                      +++.+..+.+|...|.+++|+   +++ +++++++.|+.+++||+.+++.+. ..+|.+.|.+++|+| ++.++++++.|
T Consensus       258 ~~~~~~~~~~~~~~v~~l~~s---p~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          258 NPDSAQTSAVHSQNITGLAYS---YHSSPFLASISEDCTVAVLDADFSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             CGGGCEEECCCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTSCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCcEeEEEeccceeEEEEEEc---CCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence            456778899999999999999   565 689999999999999998776554 457999999999998 78999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      ++|++||
T Consensus       334 g~v~iW~  340 (357)
T 4g56_B          334 HKVLHHH  340 (357)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            9999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.73  E-value=1.9e-16  Score=89.63  Aligned_cols=76  Identities=16%  Similarity=0.029  Sum_probs=70.7

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEcC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKALK   88 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~~   88 (88)
                      .+.+|.+.|.+++|+   ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|++++. .+++++.|+++++||
T Consensus       122 ~~~~H~~~V~~v~~s---pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd  198 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVL---SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD  198 (344)
T ss_dssp             EEECCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             cccCCCCCEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccc
Confidence            456899999999999   8999999999999999999999999999999999999999999875 678999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.4e-16  Score=88.44  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=67.8

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC----CEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ..+..+.+|...|.+++|+   ++++.+++++.|+.+++|++...    ..+..+.+|...|..++|+|++.++++++.|
T Consensus        98 ~~~~~~~~h~~~V~~v~~s---p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  174 (330)
T 2hes_X           98 DLLAIIEGHENEVKGVAWS---NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD  174 (330)
T ss_dssp             EEEEEEC----CEEEEEEC---TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             eeEEEEcCCCCcEEEEEEC---CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence            4567789999999999999   79999999999999999999432    3567788999999999999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +++++||
T Consensus       175 ~~i~iW~  181 (330)
T 2hes_X          175 DTVRIWK  181 (330)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            9999995

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.72  E-value=4.8e-16  Score=87.08  Aligned_cols=80  Identities=26%  Similarity=0.590  Sum_probs=75.0

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .....+.+|.+.|.+++|+   ++++.+++++.|+.+.+|++.++..+..+.+|...|.+++|+|++.++++++.|+.++
T Consensus        23 ~~~~~l~~h~~~v~~~~~s---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYN---KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             EEEEEEECCSSCEEEEEEC---TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             cccEEEEEeeceEEEEEEc---CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            3456789999999999999   7999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       100 iwd  102 (369)
T 3zwl_B          100 LWD  102 (369)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.72  E-value=3.9e-16  Score=87.84  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=75.2

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ....++.+|.+.|.+++|+   ++++.+++++.|+.+++|+..++..+..+..|...+..++|+|++.++++++.|+.++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s---~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWG---TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEC---TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             hhheeecCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            4567899999999999999   8999999999999999999999998899999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       123 iw~  125 (340)
T 1got_B          123 IYN  125 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            995

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.72  E-value=1.8e-16  Score=87.87  Aligned_cols=78  Identities=21%  Similarity=0.247  Sum_probs=69.8

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCC--CCeEEEecCCCe
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKD--ASKAASGAADFQ   83 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~   83 (88)
                      +..+.+|...|.+++|+   ++|+.+++++.|+.+++|++...  ..+..+.+|.+.|.+++|+++  +.++++++.|++
T Consensus         2 ~~~~~~h~~~V~~~~~s---~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMD---YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             CEECCSCSSCEEEEEEC---TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             ceeccCCcCceEEEEEC---CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            45678999999999999   89999999999999999998643  567888999999999999874  789999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus        79 v~iWd   83 (297)
T 2pm7_B           79 VMIWK   83 (297)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.71  E-value=6.3e-16  Score=87.55  Aligned_cols=84  Identities=25%  Similarity=0.313  Sum_probs=76.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.+|...|.+++++|. +++..+++++.|+.+++||+.++..+..+.+|...|.+++|+|++..+++++.|++
T Consensus       185 ~~~~~~~~~~h~~~v~~~~~~~~-~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  263 (354)
T 2pbi_B          185 SGQLLQSFHGHGADVLCLDLAPS-ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT  263 (354)
T ss_dssp             TCCEEEEEECCSSCEEEEEECCC-SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEcCCCCCeEEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence            45678889999999999999841 24689999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       264 v~lwd  268 (354)
T 2pbi_B          264 CRLYD  268 (354)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.71  E-value=4.2e-16  Score=94.28  Aligned_cols=80  Identities=25%  Similarity=0.270  Sum_probs=75.2

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .....+.+|...|.+++|+   ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|++++
T Consensus       421 ~~~~~~~~h~~~v~~v~~s---~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  497 (694)
T 3dm0_A          421 VAQRRLTGHSHFVEDVVLS---SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK  497 (694)
T ss_dssp             EEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             cccceecCCCCcEEEEEEC---CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            3456788999999999999   8999999999999999999999988899999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       498 iwd  500 (694)
T 3dm0_A          498 LWN  500 (694)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.70  E-value=2.3e-16  Score=88.20  Aligned_cols=80  Identities=25%  Similarity=0.233  Sum_probs=70.2

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-----CCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-----GDWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ...++.+|++.|.+++|+|  .+++.+++++.|+.+++|++..     +..+..+.+|...|..++|++++.++++++.|
T Consensus         9 l~~~l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            4668899999999999994  3458999999999999998753     23467788999999999999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +++++||
T Consensus        87 ~~v~~wd   93 (319)
T 3frx_A           87 KTLRLWD   93 (319)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.70  E-value=3.3e-16  Score=88.35  Aligned_cols=85  Identities=22%  Similarity=0.212  Sum_probs=71.9

Q ss_pred             CCCccceeEEecCCCC-CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE---EecCCCCeEEEEEECCCCCeEE
Q psy6444           1 MASIRQIPLTCSGHTR-PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG---TFEGHKGCVWGVDINKDASKAA   76 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~   76 (88)
                      |...-..+.++.+|.. .+..++|+   ++|+.+++++.|+.+++|++..+....   ...+|...|.+++|+|++.+++
T Consensus         1 ~~~~~~~~~~~~~h~~~~v~~l~~s---p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~   77 (345)
T 3fm0_A            1 MKDSLVLLGRVPAHPDSRCWFLAWN---PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA   77 (345)
T ss_dssp             ---CEEEEEEECCSTTSCEEEEEEC---TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred             CCccEEEeeeecCCCCCcEEEEEEC---CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE
Confidence            3445567888999988 89999999   799999999999999999987665332   2367999999999999999999


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      +++.|+++++||
T Consensus        78 s~s~D~~v~iw~   89 (345)
T 3fm0_A           78 SASFDATTCIWK   89 (345)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEECCCcEEEEE
Confidence            999999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.70  E-value=1.1e-15  Score=84.76  Aligned_cols=82  Identities=23%  Similarity=0.338  Sum_probs=76.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +++....+.+|...|.+++|+   ++++.+++++.|+.+++|++.++..+..+.+|...+.++.|+|++.++++++.|+.
T Consensus        54 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~  130 (312)
T 4ery_A           54 DGKFEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES  130 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             CcccchhhccCCCceEEEEEc---CCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence            455677888999999999999   79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       131 i~iwd  135 (312)
T 4ery_A          131 VRIWD  135 (312)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.69  E-value=6.4e-16  Score=88.31  Aligned_cols=82  Identities=21%  Similarity=0.189  Sum_probs=75.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++....+.+|...|.+++|+   ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|+.
T Consensus       128 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~  204 (420)
T 3vl1_A          128 FNLQREIDQAHVSEITKLKFF---PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT  204 (420)
T ss_dssp             SCEEEEETTSSSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             CcceeeecccccCccEEEEEC---CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            455666778999999999999   79999999999999999999988888899999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       205 v~iwd  209 (420)
T 3vl1_A          205 IRLWE  209 (420)
T ss_dssp             EEEEE
T ss_pred             EEEeE
Confidence            99996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.69  E-value=3.8e-16  Score=87.93  Aligned_cols=81  Identities=19%  Similarity=0.129  Sum_probs=71.1

Q ss_pred             ceeEEecCCCCCEEEEEE-----EecCCCCcEEEEEeCCCCEEEEECCCC-------CEEEEecCCCCeEEEEEECCCCC
Q psy6444           6 QIPLTCSGHTRPVVHLAF-----SDITESGYFLISACKDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDAS   73 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~   73 (88)
                      ....++++|+..|.+++|     ++  ++++.+++++.|+.+++|++...       .....+.+|...|..++|+|++.
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~--~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKEN--EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTT--CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             eeeeeeccchhhhhheeeEEEeecC--CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            456789999999999999     62  48899999999999999998643       34567889999999999999999


Q ss_pred             eEEEecCCCeEEEcC
Q psy6444          74 KAASGAADFQAKALK   88 (88)
Q Consensus        74 ~~~~~~~d~~i~~~~   88 (88)
                      ++++++.|+++++||
T Consensus        90 ~l~s~s~D~~v~lwd  104 (343)
T 2xzm_R           90 FAISSSWDKTLRLWD  104 (343)
T ss_dssp             EEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCcEEEEE
Confidence            999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.69  E-value=8.7e-16  Score=86.94  Aligned_cols=81  Identities=17%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d   81 (88)
                      .++++.++.+|...|.+++|+   +++ .++++++.|+.|++||...++ +..+.+|.+.|.+++|+|++. ++++++.|
T Consensus       246 ~~~~~~~~~~h~~~v~~v~fs---p~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          246 STSCVLSSAVHSQCVTGLVFS---PHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             C--CCEEEECCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCcEEEEEcCCCCCEEEEEEc---cCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence            466788899999999999999   676 678999999999999998665 456789999999999999886 45689999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      ++|++|+
T Consensus       322 ~~v~~w~  328 (344)
T 4gqb_B          322 HQVVHHV  328 (344)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            9999995

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.5e-16  Score=88.59  Aligned_cols=81  Identities=22%  Similarity=0.261  Sum_probs=70.5

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC--CCCEEEEecCCCCeEEEEEECCC--CCeEEEecC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKD--ASKAASGAA   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~   80 (88)
                      |.++..+.+|...|.+++|+   ++++.+++++.|+.+.+|++.  ....+..+.+|...|.+++|+++  +.++++++.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLD---YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             ----CCEEECCCCEEEEEEC---SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCccEEecCCcccEEEEEEc---CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence            35677889999999999999   799999999999999999987  44566788899999999999987  899999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.+++||
T Consensus        78 dg~v~iwd   85 (379)
T 3jrp_A           78 DGKVLIWK   85 (379)
T ss_dssp             TSCEEEEE
T ss_pred             CCEEEEEE
Confidence            99999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.67  E-value=1.7e-15  Score=85.75  Aligned_cols=80  Identities=16%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +....+.+|...|.+++|+   +++..+++++.|+.+++|+..++.....+..+...+..++|+|++..+++++.|+.++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s---~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~  131 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWC---KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS  131 (354)
T ss_dssp             CEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred             EEEEEecCCCCeEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence            4567899999999999999   7999999999999999999988888888888889999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|+
T Consensus       132 v~~  134 (354)
T 2pbi_B          132 VYP  134 (354)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            984

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.67  E-value=4.8e-16  Score=86.78  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=63.7

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECC--CCCeEEEecCCCeE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINK--DASKAASGAADFQA   84 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d~~i   84 (88)
                      ..+.+|...|.+++|+   ++|+.+++++.|+.+++|++.++.  .+..+.+|...|..++|++  ++.++++++.|+++
T Consensus         7 ~~~~~H~~~V~~v~~s---~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMD---YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -------CCEEEEEEC---GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             eecccccCeEEEeeEc---CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            3467899999999999   799999999999999999997664  4577889999999999986  48899999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus        84 ~iWd   87 (316)
T 3bg1_A           84 IIWR   87 (316)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.67  E-value=1.5e-15  Score=91.01  Aligned_cols=80  Identities=24%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      .....+.+|...|.+++|+   +++. .+++++.|+.+++|+...++....+.+|...|.+++|+|++.++++++.|+++
T Consensus       138 ~~~~~l~gh~~~v~~v~f~---p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i  214 (611)
T 1nr0_A          138 TSNGNLTGQARAMNSVDFK---PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI  214 (611)
T ss_dssp             CBCBCCCCCSSCEEEEEEC---SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCcceecCCCCCceEEEEC---CCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence            3455678999999999999   6775 69999999999999998888888899999999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus       215 ~lwd  218 (611)
T 1nr0_A          215 VLYN  218 (611)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.67  E-value=2.7e-15  Score=84.62  Aligned_cols=75  Identities=27%  Similarity=0.349  Sum_probs=68.2

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..+|...|.+++|+   ++++.+++++.|+.+++|+...+.  .+..+.+|...|.+++|+|++.++++++.|+++++||
T Consensus        57 ~~~h~~~v~~~~~s---p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd  133 (345)
T 3fm0_A           57 SEGHQRTVRKVAWS---PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE  133 (345)
T ss_dssp             CSSCSSCEEEEEEC---TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccCCcEEEEEEC---CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEE
Confidence            36799999999999   799999999999999999987653  5677889999999999999999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.67  E-value=2.2e-15  Score=84.38  Aligned_cols=81  Identities=25%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCC---CcEEEEEeCCCCEEEEECCC-CCEE-EEecCCCCeEEEEEECCCCCeEEEec
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITES---GYFLISACKDGKPMLRQGDT-GDWI-GTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      .+.+..+.+|.+.|.+++|+   ++   |+.+++++.|+.+++|++.+ +..+ ..+.+|...|.+++|+|++.++++++
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~---~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFS---PPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEEC---CTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cceeEeccCCCCceEEEEEc---CCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            35677888999999999999   56   69999999999999999986 4444 67788999999999999999999999


Q ss_pred             CCCeEEEcC
Q psy6444          80 ADFQAKALK   88 (88)
Q Consensus        80 ~d~~i~~~~   88 (88)
                      .|+.+++||
T Consensus       106 ~dg~v~iwd  114 (368)
T 3mmy_A          106 CDKTAKMWD  114 (368)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.67  E-value=2.1e-15  Score=85.93  Aligned_cols=75  Identities=25%  Similarity=0.351  Sum_probs=68.4

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+|...|.++.|+|  .+++.+++++.|+.+++||+. .+..+..+.+|...|.+++|+|++.++++++.|+++++||
T Consensus       202 ~~h~~~v~~~~~~~--~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd  277 (380)
T 3iz6_a          202 SGHTADVLSLSINS--LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD  277 (380)
T ss_dssp             SSCCSCEEEEEECS--SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred             CCCccCeEEEEeec--CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence            57889999999985  688999999999999999997 3466788899999999999999999999999999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.66  E-value=6.7e-15  Score=81.31  Aligned_cols=73  Identities=21%  Similarity=0.221  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEE--eCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISA--CKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+...+..+.|+   +.++.++++  +.|+.+++|++.++..+..+.+|.+.|.+++|+|++.++++++.|++|++||
T Consensus       238 ~~~~~v~~~~~~---~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          238 DAHSQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             ECSSCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             cceeeeeeeeec---ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            356678889999   677766654  4789999999999999999999999999999999999999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.1e-15  Score=83.94  Aligned_cols=80  Identities=23%  Similarity=0.390  Sum_probs=71.7

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCC--CCeEEEecCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKD--ASKAASGAAD   81 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d   81 (88)
                      +.+..+.+|...|.+++|+   +++..+++++.|+.+++|+...+  ..+..+.+|...|..++|+|+  +..+++++.|
T Consensus       144 ~~~~~~~~h~~~v~~v~~~---p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D  220 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWH---PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD  220 (330)
T ss_dssp             EEEEEECCCSSCEEEEEEC---SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred             EEEEEeccCCCceEEEEEC---CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC
Confidence            4567788999999999999   79999999999999999998755  467788999999999999998  6788999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +++++||
T Consensus       221 ~~v~iw~  227 (330)
T 2hes_X          221 STVRVWK  227 (330)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            9999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.66  E-value=5.7e-15  Score=82.72  Aligned_cols=83  Identities=25%  Similarity=0.274  Sum_probs=75.3

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe---cCCCCeEEEEEECCCCCeEEEecC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF---EGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      .++.+..+.+|...|.+++|+|  .++..+++++.|+.+.+|++.++..+..+   ..|...|.+++|+|++.++++++.
T Consensus       104 ~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  181 (366)
T 3k26_A          104 TMQCIKHYVGHGNAINELKFHP--RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM  181 (366)
T ss_dssp             TCCEEEEEESCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET
T ss_pred             hceEeeeecCCCCcEEEEEECC--CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC
Confidence            4567788899999999999993  38999999999999999999988887777   679999999999999999999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.+++||
T Consensus       182 dg~i~i~d  189 (366)
T 3k26_A          182 DHSLKLWR  189 (366)
T ss_dssp             TSCEEEEE
T ss_pred             CCCEEEEE
Confidence            99999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.66  E-value=2.2e-15  Score=83.55  Aligned_cols=78  Identities=17%  Similarity=0.170  Sum_probs=69.5

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC----CEEEEecCCCCeEEEEEECC--CCCeEEEecCC
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK--DASKAASGAAD   81 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d   81 (88)
                      ...+.+|.+.|.+++|+   ++++.+++++.|+.+++|++..+    ..+..+.+|...|.+++|+|  ++.++++++.|
T Consensus         4 ~~~~~gH~~~v~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYD---FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCEECCCSSCEEEEEEC---SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cccCcccccceeEEEEc---CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            34568999999999999   79999999999999999999865    35567788999999999999  58999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus        81 g~v~vwd   87 (351)
T 3f3f_A           81 KTVKLWE   87 (351)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEe
Confidence            9999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.66  E-value=6.4e-15  Score=84.29  Aligned_cols=69  Identities=19%  Similarity=0.305  Sum_probs=65.6

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .|.+++|+   ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|+|++.++++++.|+++++||
T Consensus       125 ~v~~v~~s---~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd  193 (393)
T 1erj_A          125 YIRSVCFS---PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  193 (393)
T ss_dssp             BEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEEC---CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence            48899999   8999999999999999999998888899999999999999999999999999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.66  E-value=7.5e-16  Score=89.03  Aligned_cols=78  Identities=15%  Similarity=0.127  Sum_probs=66.7

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINK-DASKAASGAADFQAK   85 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~   85 (88)
                      .....|...|.+++|+|  .++..+++|+.||.|.+|++..+.  ....+.+|.+.|.+++|+| ++.++++++.|++|+
T Consensus       113 ~~~~~~~~~V~~l~~~P--~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHP--THPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             CEEEECSSCEEEEEECS--SCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ccCCCCCCCEEEEEEeC--CCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            34556888899999996  567899999999999999987654  3455678999999999998 688999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       191 iwd  193 (435)
T 4e54_B          191 LQD  193 (435)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.66  E-value=1.1e-14  Score=83.80  Aligned_cols=80  Identities=20%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe--CCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC--KDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ++....+..| ..+..+.|+   ++++.+++++  .|+.|.+|++.++..+..+.+|.+.|.+++|+|++.++++++.|+
T Consensus       311 ~~~~~~~~~~-~~v~~~~~~---~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~  386 (420)
T 4gga_A          311 GACLSAVDAH-SQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE  386 (420)
T ss_dssp             TEEEEEEECS-SCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             cccceeeccc-cceeeeeec---CCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            3444555544 567888899   6787777654  689999999999999999999999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      +|++||
T Consensus       387 tvriWd  392 (420)
T 4gga_A          387 TLRLWR  392 (420)
T ss_dssp             EEEEEC
T ss_pred             eEEEEE
Confidence            999997

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.65  E-value=3.6e-16  Score=89.57  Aligned_cols=81  Identities=12%  Similarity=0.008  Sum_probs=70.3

Q ss_pred             eEEecCCCCCEEEEEEEec-----CCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCC
Q psy6444           8 PLTCSGHTRPVVHLAFSDI-----TESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAAD   81 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d   81 (88)
                      +..+.+|++.|.+++|+|.     +.+++.+++++.|+.+++||+.++..+..+..|...+.+++|+|++. ++++++.|
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence            4457899999999999851     12789999999999999999988877778888889999999999874 78899999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +++++||
T Consensus       209 ~~v~~wd  215 (393)
T 4gq1_A          209 GNIRIFD  215 (393)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.65  E-value=2.9e-15  Score=83.08  Aligned_cols=79  Identities=20%  Similarity=0.381  Sum_probs=70.3

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCC----cEEEEEeCCCCEEEEECCCC--------------------------------
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESG----YFLISACKDGKPMLRQGDTG--------------------------------   50 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------------------------------   50 (88)
                      .+..+.+|...|.+++|+   +++    +.+++++.|+.+++|++..+                                
T Consensus       206 ~~~~~~~h~~~i~~~~~~---p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
T 3f3f_A          206 VAAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS  282 (351)
T ss_dssp             EEEECCCCCSCEEEEEEC---CCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred             eeeecCCCCcceeEEEEC---CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence            367788899999999999   677    89999999999999998754                                


Q ss_pred             --------------CEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          51 --------------DWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        51 --------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                                    ..+..+.+|...|.+++|+|++.++++++.|+.+++||
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          283 NTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             --------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             ccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence                          45566788999999999999999999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.65  E-value=3.7e-15  Score=82.54  Aligned_cols=81  Identities=22%  Similarity=0.300  Sum_probs=70.7

Q ss_pred             ceeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCC--CCeEEEecC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKD--ASKAASGAA   80 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~   80 (88)
                      +.+.++.+|.++|.+++|+|  + +++.+++++.|+.+++|++.++.  .+..+.+|...|.+++|+|+  +.++++++.
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~--~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~  121 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS  121 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECC--GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             EEEEEEccccCCeEEEEecC--CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC
Confidence            56778999999999999973  3 37899999999999999998763  45667789999999999997  789999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.+++||
T Consensus       122 d~~v~~wd  129 (297)
T 2pm7_B          122 DGKVSVVE  129 (297)
T ss_dssp             TSEEEEEE
T ss_pred             CCcEEEEE
Confidence            99999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.65  E-value=5.7e-15  Score=84.43  Aligned_cols=80  Identities=23%  Similarity=0.326  Sum_probs=74.1

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEe--cCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTF--EGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      .++..+.+|...|.+++|+   +++ ..+++++.|+.+.+|++.++..+..+  ..|...|.+++|+|++.++++++.|+
T Consensus       122 ~~~~~~~~h~~~v~~~~~~---p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  198 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWH---PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK  198 (402)
T ss_dssp             SCSEEEECCSSCEEEEEEC---SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS
T ss_pred             CceEEecCCCCeEEEEEEC---cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC
Confidence            5677889999999999999   677 69999999999999999988888888  78999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++||
T Consensus       199 ~i~iwd  204 (402)
T 2aq5_A          199 RVRVIE  204 (402)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.64  E-value=1.3e-14  Score=82.30  Aligned_cols=76  Identities=16%  Similarity=0.016  Sum_probs=70.0

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEcC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKALK   88 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~~   88 (88)
                      ...+|...|.+++|+   ++++.+++++.|+.+++|++.++..+..+.+|...|.+++|++++. .+++++.|+.+++||
T Consensus       134 ~~~~h~~~V~~v~~s---pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd  210 (357)
T 4g56_B          134 AKYEHDDIVKTLSVF---SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD  210 (357)
T ss_dssp             EECCCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred             ccCCCCCCEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence            445799999999999   7999999999999999999999999999999999999999999875 678999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.63  E-value=7.4e-15  Score=84.04  Aligned_cols=80  Identities=23%  Similarity=0.383  Sum_probs=72.9

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC------CCCeEEEec
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK------DASKAASGA   79 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~   79 (88)
                      .....+.+|...|.+++|+   +++.++++++.|+.+++|+..++..+..+.+|.+.|..++|++      ++..+++++
T Consensus       301 ~~~~~~~~h~~~v~~~~~~---~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs  377 (393)
T 1erj_A          301 TCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  377 (393)
T ss_dssp             CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             cceEEEecccCcEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence            4456788999999999999   7899999999999999999999999999999999999999876      577899999


Q ss_pred             CCCeEEEcC
Q psy6444          80 ADFQAKALK   88 (88)
Q Consensus        80 ~d~~i~~~~   88 (88)
                      .|+++++|+
T Consensus       378 ~Dg~i~iW~  386 (393)
T 1erj_A          378 GDCKARIWK  386 (393)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCcEEECc
Confidence            999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.63  E-value=4.6e-15  Score=82.82  Aligned_cols=80  Identities=24%  Similarity=0.294  Sum_probs=70.0

Q ss_pred             eeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCC--CCeEEEecCC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKD--ASKAASGAAD   81 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d   81 (88)
                      .+..+.+|.+.|.+++|+|  + +++.+++++.|+.+++|++.++  .....+.+|...|.+++|+|+  +.++++++.|
T Consensus        49 ~~~~l~gH~~~V~~v~~~~--~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D  126 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAH--PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD  126 (316)
T ss_dssp             EEEEEECCSSCEEEEEECC--GGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS
T ss_pred             EEEEEcCCCccEEEEEeCC--CCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC
Confidence            4677899999999999973  3 4889999999999999999876  356678889999999999998  7789999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus       127 ~~i~lwd  133 (316)
T 3bg1_A          127 GAISLLT  133 (316)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEe
Confidence            9999995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.63  E-value=5.1e-15  Score=84.60  Aligned_cols=79  Identities=24%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             eeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCC-------CEEEEecCCCCeEEEEEECCCC-CeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTG-------DWIGTFEGHKGCVWGVDINKDA-SKAAS   77 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~~~~   77 (88)
                      .+..+.+|.+.|.+++|+   + +++.+++++.|+.+.+|++..+       ..+..+.+|...|.+++|+|++ ..+++
T Consensus        73 ~~~~~~~h~~~V~~~~~~---p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  149 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWC---PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS  149 (402)
T ss_dssp             TCCCBCCCSSCEEEEEEC---TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred             CCceEecCCCCEEEEEeC---CCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEE
Confidence            344577899999999999   6 8999999999999999999876       5567888999999999999998 68999


Q ss_pred             ecCCCeEEEcC
Q psy6444          78 GAADFQAKALK   88 (88)
Q Consensus        78 ~~~d~~i~~~~   88 (88)
                      ++.|+.+++||
T Consensus       150 ~~~dg~i~iwd  160 (402)
T 2aq5_A          150 AGCDNVILVWD  160 (402)
T ss_dssp             EETTSCEEEEE
T ss_pred             EcCCCEEEEEE
Confidence            99999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.63  E-value=2.4e-14  Score=79.72  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=66.8

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe---------------------------
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF---------------------------   56 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------   56 (88)
                      .++.+..+.+|.+.|.+++|+   ++++.+++++.|+.+++|++.+...+..+                           
T Consensus       204 ~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~  280 (340)
T 4aow_A          204 NCKLKTNHIGHTGYLNTVTVS---PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIK  280 (340)
T ss_dssp             TTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEE
T ss_pred             CCceeeEecCCCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEE
Confidence            456778889999999999999   79999999999999999988754433221                           


Q ss_pred             ----------------------cCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          57 ----------------------EGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        57 ----------------------~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                                            .+|...|.+++|+|++.++++++.|+.|++||
T Consensus       281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence                                  13456788889999999999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.63  E-value=8.9e-15  Score=88.57  Aligned_cols=80  Identities=23%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC-----CEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG-----DWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ....+++|+..|.+++|+|  .+++.+++++.|+.+++|++...     .....+.+|...|.+++|+|++.++++++.|
T Consensus       374 ~~~~l~~H~~~V~~v~~~~--~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPI--DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             EEEEEECCSSCEEEEECCT--TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             hhhhcccCCceeEEEEecC--CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            3456889999999999994  45689999999999999998653     2456788999999999999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      ++|++||
T Consensus       452 g~v~vwd  458 (694)
T 3dm0_A          452 GELRLWD  458 (694)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEE
Confidence            9999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.63  E-value=1.4e-14  Score=91.60  Aligned_cols=79  Identities=25%  Similarity=0.276  Sum_probs=74.3

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ....+.+|.+.|.+++|+   ++++.+++++.|+.+.+|+..++..+..+.+|...|.+++|+|++.++++++.|+.+++
T Consensus       607 ~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFS---QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI  683 (1249)
T ss_dssp             CSEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceEEEecccccEEEEEEC---CCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence            345678999999999999   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       684 wd  685 (1249)
T 3sfz_A          684 WD  685 (1249)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.62  E-value=5.8e-15  Score=85.83  Aligned_cols=79  Identities=10%  Similarity=-0.039  Sum_probs=69.7

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ...+.+|...|.+++|+|  ..+..+++++.|+.+++||+.++..+....+|...+.+++|+|++.++++++.|+.+++|
T Consensus       142 ~~~~~~h~~~V~~v~~~p--~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iw  219 (434)
T 2oit_A          142 HKLLKDAGGMVIDMKWNP--TVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY  219 (434)
T ss_dssp             EECCCSGGGSEEEEEECS--SCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             eeccCCCCCceEEEEECC--CCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEE
Confidence            456677999999999994  347899999999999999998876666667788899999999999999999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       220 d  220 (434)
T 2oit_A          220 L  220 (434)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.61  E-value=2.3e-14  Score=87.40  Aligned_cols=82  Identities=17%  Similarity=0.202  Sum_probs=77.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .+..+..+.+|.+.|.+++|+   ++++.+++++.++.+.+|++.++..+..+.+|...|..++|+|++.++++++.|+.
T Consensus        44 ~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  120 (814)
T 3mkq_A           44 TQVEVRSIQVTETPVRAGKFI---ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT  120 (814)
T ss_dssp             TTEEEEEEECCSSCEEEEEEE---GGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             CCceEEEEecCCCcEEEEEEe---CCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCE
Confidence            466778889999999999999   79999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       121 i~vw~  125 (814)
T 3mkq_A          121 VKLWN  125 (814)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.61  E-value=4.9e-15  Score=83.74  Aligned_cols=80  Identities=11%  Similarity=0.052  Sum_probs=68.1

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      +.+..+.+|...|.+++|+   ++++.+++++.|+.+++|++..+.   ....+..|...+.+++|+|++.++++++.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s---~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  122 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWA---PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR  122 (377)
T ss_dssp             EECCCBCCCSSCEEEEEEC---TTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS
T ss_pred             EEEEEEecCCceEEEEEEe---CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC
Confidence            5667788999999999999   789999999999999999998766   5667788999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++||
T Consensus       123 ~i~iwd  128 (377)
T 3dwl_C          123 VISVCY  128 (377)
T ss_dssp             CEEECC
T ss_pred             eEEEEE
Confidence            999997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.61  E-value=6.5e-15  Score=89.76  Aligned_cols=80  Identities=14%  Similarity=0.161  Sum_probs=74.9

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ...+.+.+|.+.|.+++|+   ++++++++++.++.+.+|++.++..+..+.+|...|.+++|+|++.++++++.|+.++
T Consensus         4 ~~~~~~~~h~~~v~~i~~s---p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~   80 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFH---PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (814)
T ss_dssp             CCEEEEEEECSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             ccceeeecCCCceEEEEEC---CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence            3466788999999999999   7999999999999999999999988999999999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus        81 vw~   83 (814)
T 3mkq_A           81 VFN   83 (814)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.2e-14  Score=83.61  Aligned_cols=81  Identities=17%  Similarity=0.127  Sum_probs=69.3

Q ss_pred             ccceeEEe-cCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCC---CC---EEEEecCCCCeEEEEEECCCCCeE
Q psy6444           4 IRQIPLTC-SGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDT---GD---WIGTFEGHKGCVWGVDINKDASKA   75 (88)
Q Consensus         4 ~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~i~~~~~~~~~~~~   75 (88)
                      .++.+..+ .+|.+.|.+++|+   + +++.+++++.|+.+++|++..   +.   ....+ .|...|.+++|+|++..+
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s---~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l  126 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVS---PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAF  126 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEE---CSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEE
T ss_pred             cceEEeeeccCCCCceEEEEEC---CCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEE
Confidence            45677788 8899999999999   7 999999999999999999865   32   12222 488999999999999999


Q ss_pred             EEecCCCeEEEcC
Q psy6444          76 ASGAADFQAKALK   88 (88)
Q Consensus        76 ~~~~~d~~i~~~~   88 (88)
                      ++++.|+.+++||
T Consensus       127 ~s~s~dg~i~vwd  139 (437)
T 3gre_A          127 AVSSKDGQIIVLK  139 (437)
T ss_dssp             EEEETTSEEEEEE
T ss_pred             EEEeCCCEEEEEE
Confidence            9999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.3e-14  Score=78.89  Aligned_cols=80  Identities=18%  Similarity=0.113  Sum_probs=73.0

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      .+....+.+|.+.|.+++| |   +++.+++++.|+.+++|++.++.....+..|...+.+++|+|++..+++++.|+.+
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   83 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-V---DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI   83 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-E---ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             HHHHHHhhCCCCCcEEEEe-c---CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence            4678889999999999999 4   68889999999999999998888888888899999999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++|+
T Consensus        84 ~~~~   87 (313)
T 3odt_A           84 NGVP   87 (313)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9885

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.60  E-value=3e-14  Score=80.98  Aligned_cols=59  Identities=12%  Similarity=0.025  Sum_probs=52.5

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEE-EEEECCCCCeEEEecCCCeEEEcC
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVW-GVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..+++++.|+.|++||+.+++.+..+.+|...+. .++|+|++.++++++.|++|++||
T Consensus       295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            66889999999999999999999999999877655 589999999999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.60  E-value=3.8e-14  Score=80.43  Aligned_cols=82  Identities=24%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             ccceeEEecC-------------CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec------CC-----
Q psy6444           4 IRQIPLTCSG-------------HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE------GH-----   59 (88)
Q Consensus         4 ~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----   59 (88)
                      .++.+..+.+             |...+.+++|+   ++++.+++++.|+.+.+|++.++..+..+.      .|     
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  343 (397)
T 1sq9_A          267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN---DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL  343 (397)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred             CCcccceeccCcccccccccccccCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence            4456677777             89999999999   799999999999999999999888888888      77     


Q ss_pred             ----------CCeEEEEEECCCC----------CeEEEecCCCeEEEcC
Q psy6444          60 ----------KGCVWGVDINKDA----------SKAASGAADFQAKALK   88 (88)
Q Consensus        60 ----------~~~i~~~~~~~~~----------~~~~~~~~d~~i~~~~   88 (88)
                                ...|..++|+|++          .++++++.|+.+++||
T Consensus       344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence                      8999999999998          7899999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.1e-14  Score=82.92  Aligned_cols=81  Identities=15%  Similarity=0.262  Sum_probs=73.8

Q ss_pred             ceeEEec-CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCC-CeEEEecCCCe
Q psy6444           6 QIPLTCS-GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDA-SKAASGAADFQ   83 (88)
Q Consensus         6 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~   83 (88)
                      .++..+. +|...+.+++|+|  .++..+++++.|+.+.+|++.++..+..+..|...+..++|+|++ .++++++.|+.
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~--~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECS--SCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             CCcEEeecCccCceeEEEeCC--CCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence            5566777 8999999999993  389999999999999999999999999999999999999999998 79999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       330 i~iw~  334 (416)
T 2pm9_A          330 IEVQT  334 (416)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.59  E-value=1.6e-14  Score=85.52  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=74.0

Q ss_pred             ccceeEEecC-CCCCEEEEEEEecCC----------CCcEEEEEeCCCCEEEEECCCC-CEEEEecCCCCeEEEEEECCC
Q psy6444           4 IRQIPLTCSG-HTRPVVHLAFSDITE----------SGYFLISACKDGKPMLRQGDTG-DWIGTFEGHKGCVWGVDINKD   71 (88)
Q Consensus         4 ~~~~~~~~~~-~~~~v~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~   71 (88)
                      .++.+..+.+ |...|.+++|+   +          +++.+++++.|+.+++|++.++ ..+..+.+|...|.+++|+|+
T Consensus       519 ~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~  595 (615)
T 1pgu_A          519 SREVKTSRWAFRTSKINAISWK---PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  595 (615)
T ss_dssp             TTEEEECCSCCCSSCEEEEEEC---CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             CCcceeEeecCCCCceeEEEEc---CccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC
Confidence            4566777787 99999999999   7          8999999999999999999887 677888999999999999999


Q ss_pred             CCeEEEecCCCeEEEcC
Q psy6444          72 ASKAASGAADFQAKALK   88 (88)
Q Consensus        72 ~~~~~~~~~d~~i~~~~   88 (88)
                      +. +++++.|+.+++||
T Consensus       596 ~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          596 ST-LVSSGADACIKRWN  611 (615)
T ss_dssp             TE-EEEEETTSCEEEEE
T ss_pred             CC-eEEecCCceEEEEe
Confidence            99 99999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.58  E-value=7.5e-14  Score=76.88  Aligned_cols=80  Identities=16%  Similarity=0.235  Sum_probs=72.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++++..+.+|...+.+++|+   +++ .+++++.|+.+.+|++.++..+..+..+...+..++|+|++. +++++.|+.
T Consensus       214 ~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~  288 (313)
T 3odt_A          214 TGDVLRTYEGHESFVYCIKLL---PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL  288 (313)
T ss_dssp             TCCEEEEEECCSSCEEEEEEC---TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred             chhhhhhhhcCCceEEEEEEe---cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc
Confidence            456788889999999999999   677 588999999999999999999999999999999999999998 567889999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       289 i~iw~  293 (313)
T 3odt_A          289 VRIFS  293 (313)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.58  E-value=4.4e-14  Score=80.15  Aligned_cols=81  Identities=15%  Similarity=0.161  Sum_probs=71.5

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEec--CCCCeEEEEEECC-CCCeEEEecC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINK-DASKAASGAA   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~   80 (88)
                      ......+.+|...|.+++|+   +++ +.+++++.|+.+.+|++..+.....+.  +|...|.+++|+| ++.++++++.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  139 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWH---PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI  139 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEEC---SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred             cceEEeccCCCCCEEEEEEC---CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence            44577889999999999999   687 899999999999999998777665554  6999999999999 6789999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.+++||
T Consensus       140 d~~i~iwd  147 (383)
T 3ei3_B          140 RGATTLRD  147 (383)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=4.6e-14  Score=79.38  Aligned_cols=82  Identities=21%  Similarity=0.302  Sum_probs=73.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCC--CcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCC--CCeEEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITES--GYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKD--ASKAAS   77 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~~   77 (88)
                      ....+..+.+|...|.+++|+   ++  ++.+++++.|+.+.+|++..+.  .+..+..|...+.+++|+|+  +.++++
T Consensus        44 ~~~~~~~~~~h~~~v~~~~~~---~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  120 (379)
T 3jrp_A           44 THKLIDTLTGHEGPVWRVDWA---HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV  120 (379)
T ss_dssp             EEEEEEEECCCSSCEEEEEEC---CGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             cceeeeEecCCCCcEEEEEeC---CCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE
Confidence            345677888999999999998   45  8999999999999999998776  66778889999999999999  899999


Q ss_pred             ecCCCeEEEcC
Q psy6444          78 GAADFQAKALK   88 (88)
Q Consensus        78 ~~~d~~i~~~~   88 (88)
                      ++.|+.+++||
T Consensus       121 ~~~d~~i~v~d  131 (379)
T 3jrp_A          121 ASSDGKVSVVE  131 (379)
T ss_dssp             EETTSEEEEEE
T ss_pred             ecCCCcEEEEe
Confidence            99999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.57  E-value=7.7e-14  Score=79.17  Aligned_cols=82  Identities=18%  Similarity=0.226  Sum_probs=74.3

Q ss_pred             ccceeEEecC---C---CCCEEEEEEEecCCCCcEEEEEeCC---CCEEEEECCCCCEEEEecC-------------CCC
Q psy6444           4 IRQIPLTCSG---H---TRPVVHLAFSDITESGYFLISACKD---GKPMLRQGDTGDWIGTFEG-------------HKG   61 (88)
Q Consensus         4 ~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------~~~   61 (88)
                      .++++..+..   |   ...+.+++|+   +++..+++++.+   +.+.+|++.++..+..+..             |..
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~---~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          216 TLRPLYNFESQHSMINNSNSIRSVKFS---PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             TTEEEEEEECCC---CCCCCEEEEEEC---SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             CCceeEEEeccccccccCCccceEEEC---CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            3566777888   8   8999999999   789999999999   9999999998988888888             999


Q ss_pred             eEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          62 CVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        62 ~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+..++|+|++.++++++.|+.+++||
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            999999999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.57  E-value=7.9e-14  Score=79.10  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=70.7

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCC----CCEEEEecCCCCeEEEEEECC-CCCeEEEe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINK-DASKAASG   78 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~   78 (88)
                      ++++..+.+|...|.+++|+   ++++ .+++++.|+.+++|++.+    +..+..+ +|...+.+++|+| ++.+++++
T Consensus       194 ~~~~~~~~~h~~~v~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          194 GHEIFKEKLHKAKVTHAEFN---PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             SCEEEEEECSSSCEEEEEEC---SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred             CCEEEEeccCCCcEEEEEEC---CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence            45778888999999999999   6887 999999999999999986    4455555 6889999999999 99999999


Q ss_pred             cCCCeEEEcC
Q psy6444          79 AADFQAKALK   88 (88)
Q Consensus        79 ~~d~~i~~~~   88 (88)
                      +.|+.+++||
T Consensus       270 ~~d~~i~iwd  279 (383)
T 3ei3_B          270 DQRNEIRVYS  279 (383)
T ss_dssp             ESSSEEEEEE
T ss_pred             cCCCcEEEEE
Confidence            9999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.57  E-value=6.9e-15  Score=85.03  Aligned_cols=81  Identities=14%  Similarity=0.062  Sum_probs=68.5

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEE---EEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWI---GTFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      ++.+..+.+|...|.+++|+   +++ ..+++++.|+.+++||+......   ....+|...|.+++|+|++.++++++.
T Consensus       240 ~~~~~~~~~h~~~v~~v~~~---p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          240 GKELWNLRMHKKKVTHVALN---PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             SCBCCCSBCCSSCEEEEEEC---TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             cceeEEEecccceEEeeeec---CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence            45567788999999999999   565 57889999999999999765533   233568899999999999999999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.|++||
T Consensus       317 D~~i~iwd  324 (435)
T 4e54_B          317 KSEIRVYS  324 (435)
T ss_dssp             SSCEEEEE
T ss_pred             CCEEEEEE
Confidence            99999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.57  E-value=6e-14  Score=79.54  Aligned_cols=81  Identities=17%  Similarity=0.129  Sum_probs=69.6

Q ss_pred             cceeEEecCCCCCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEEe-------------cCCCCeEEEEEECC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGTF-------------EGHKGCVWGVDINK   70 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~   70 (88)
                      ++....+.+|.+.|.+++|+   + +++.+++++.|+.+.+|++.++.....+             .+|...|..++|+|
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s---~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  109 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIE---PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP  109 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEEC---TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred             CcceeeeeccCCcEEEEEEe---cCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence            45567788899999999999   7 9999999999999999999876543333             25889999999999


Q ss_pred             -CCCeEEEecCCCeEEEcC
Q psy6444          71 -DASKAASGAADFQAKALK   88 (88)
Q Consensus        71 -~~~~~~~~~~d~~i~~~~   88 (88)
                       ++.++++++.|+.+++||
T Consensus       110 ~~~~~l~s~~~d~~i~iwd  128 (408)
T 4a11_B          110 HDTGMFTSSSFDKTLKVWD  128 (408)
T ss_dssp             TCTTCEEEEETTSEEEEEE
T ss_pred             CCCcEEEEEeCCCeEEEee
Confidence             777899999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=8.5e-14  Score=78.31  Aligned_cols=80  Identities=9%  Similarity=0.002  Sum_probs=67.7

Q ss_pred             cceeEEecC-CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE-EEecC-CCCeEEEEEECCCCCeEEEecCC
Q psy6444           5 RQIPLTCSG-HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI-GTFEG-HKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         5 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ++.+..... |...+.+++|+   +++..+++++.|+.+++||+.++..+ ..+.. |...|.+++|+|++.++++++.+
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~---pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~  235 (343)
T 3lrv_A          159 DSQYIVHSAKSDVEYSSGVLH---KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ  235 (343)
T ss_dssp             SCEEEEECCCSSCCCCEEEEC---TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS
T ss_pred             CcEEEEEecCCCCceEEEEEC---CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            344444434 45579999999   79999999999999999999988876 77887 99999999999999999998854


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                       .+++||
T Consensus       236 -~v~iwd  241 (343)
T 3lrv_A          236 -TVVCFD  241 (343)
T ss_dssp             -BEEEEE
T ss_pred             -eEEEEE
Confidence             999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.56  E-value=1.5e-13  Score=79.59  Aligned_cols=81  Identities=27%  Similarity=0.359  Sum_probs=73.4

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC--CCCCeEEEecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN--KDASKAASGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~d   81 (88)
                      .++.+..+.+|.+.|.+++|+   +++ .+++++.|+.+.+|++.++..+..+.+|...|.+++++  +++.++++++.|
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~---~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d  226 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYA---HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD  226 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEC---STT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETT
T ss_pred             CCcEEEEEeCCCcCEEEEEEc---CCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCC
Confidence            566788899999999999998   566 99999999999999999999999999999999999988  577889999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus       227 ~~i~vwd  233 (464)
T 3v7d_B          227 NTLHVWK  233 (464)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEee
Confidence            9999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.56  E-value=2.9e-13  Score=78.41  Aligned_cols=80  Identities=21%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.+|...+.++.|+   ++++.+++++.|+.+++|++.++..+..+.+|...+..+.++  +.++++++.|+.
T Consensus       299 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~  373 (464)
T 3v7d_B          299 QMKCLYILSGHTDRIYSTIYD---HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS  373 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             CCcEEEEecCCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence            456778889999999999999   799999999999999999999999999999999999999997  578999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       374 v~vwd  378 (464)
T 3v7d_B          374 IRGWD  378 (464)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=3.9e-14  Score=88.28  Aligned_cols=72  Identities=11%  Similarity=0.051  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-----------------------------------------
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-----------------------------------------   51 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------   51 (88)
                      +|...|.+++|+   ++++.+++++.|+.+++|++..+.                                         
T Consensus       486 ~h~~~V~svafs---pdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (902)
T 2oaj_A          486 AKELAVDKISFA---AETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR  562 (902)
T ss_dssp             SSSCCEEEEEEE---TTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred             CCCCceeEEEec---CCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence            788899999999   899999999999999999986542                                         


Q ss_pred             ----EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          52 ----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        52 ----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                          ++..+.+|.+.|++++|+|+| ++++++.|+++++||
T Consensus       563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd  602 (902)
T 2oaj_A          563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID  602 (902)
T ss_dssp             EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred             CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence                256678899999999999999 999999999999997

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.56  E-value=1.5e-13  Score=76.97  Aligned_cols=77  Identities=21%  Similarity=0.217  Sum_probs=69.3

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEE--CCCCCeEEEecCCCeEE
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI--NKDASKAASGAADFQAK   85 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~d~~i~   85 (88)
                      ...+.+|...|.+++|+   ++++.+++++.|+.+.+|++.++..+. ...|...+.+++|  ++++.++++++.|+.++
T Consensus        79 ~~~~~~h~~~v~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  154 (368)
T 3mmy_A           79 PKAQQMHTGPVLDVCWS---DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK  154 (368)
T ss_dssp             EEEEEECSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred             EEEeccccCCEEEEEEC---cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence            36788899999999999   799999999999999999998776544 5668899999999  89999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       155 vwd  157 (368)
T 3mmy_A          155 FWD  157 (368)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.55  E-value=2.9e-13  Score=75.12  Aligned_cols=79  Identities=22%  Similarity=0.316  Sum_probs=73.2

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ....+.+|...+.+++|+   ++++.+++++.++.+.+|++.++..+..+..|...+..++|+|++..+++++.|+.+++
T Consensus       133 ~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  209 (337)
T 1gxr_A          133 IKAELTSSAPACYALAIS---PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS  209 (337)
T ss_dssp             EEEEEECSSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eeeecccCCCceEEEEEC---CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence            556778899999999999   79999999999999999999988888899999999999999999999999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       210 ~d  211 (337)
T 1gxr_A          210 WD  211 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.4e-14  Score=88.69  Aligned_cols=78  Identities=23%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC--CCCEEEEecCCCCeEEEEEECCC--CCeEEEecCCCe
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDINKD--ASKAASGAADFQ   83 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~   83 (88)
                      +..+.+|.+.|.+++|+   ++++.+++++.|+.+.+|++.  +...+..+.+|.+.|.+++|+++  +.++++++.|+.
T Consensus         2 ~~~l~gH~~~V~~l~~s---~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            2 VVIANAHNELIHDAVLD---YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ------CCCCEEEECCC---SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             eeecccCcceeEEEEEC---CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            45678999999999999   799999999999999999987  34567788899999999999988  899999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus        79 I~vwd   83 (753)
T 3jro_A           79 VLIWK   83 (753)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.8e-13  Score=76.94  Aligned_cols=73  Identities=10%  Similarity=-0.051  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEEEecCC--CCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITE--SGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +|.+.|.+++|+   +  +++.+++++.|+.+++||+.++..+..... +...+.+++|+|++.++++++.|+.|++||
T Consensus       123 ~~~~~v~~~~~~---~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          123 DSANEIIYMYGH---NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             CCSSCEEEEECC---C---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEcC---CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            577889999999   8  899999999999999999998887665543 455789999999999999999999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.55  E-value=4.2e-14  Score=79.53  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=69.2

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..|..+|.+++|+   ++++.+++++.++.+.+|+...+.  .+..+.+|...|.+++|+|++.++++++.|+.+++||
T Consensus         4 ~~~~~~~i~~~~~s---~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWN---KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEEC---TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEEC---CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            45688999999999   799999999999999999998776  7788889999999999999999999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.55  E-value=1.2e-13  Score=81.84  Aligned_cols=77  Identities=10%  Similarity=0.012  Sum_probs=72.1

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECC----------CCCeEEE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINK----------DASKAAS   77 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~----------~~~~~~~   77 (88)
                      ..+.+|...+.+++|+   ++++.+++++.|+.+.+|++.++..+..+.+ |...|.+++|+|          ++.++++
T Consensus       482 ~~~~~~~~~v~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~  558 (615)
T 1pgu_A          482 DLKTPLRAKPSYISIS---PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT  558 (615)
T ss_dssp             ECSSCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred             cccCCccCceEEEEEC---CCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEE
Confidence            5667899999999999   8999999999999999999999988888888 999999999999          9999999


Q ss_pred             ecCCCeEEEcC
Q psy6444          78 GAADFQAKALK   88 (88)
Q Consensus        78 ~~~d~~i~~~~   88 (88)
                      ++.|+.+++||
T Consensus       559 ~~~dg~i~iw~  569 (615)
T 1pgu_A          559 GSLDTNIFIYS  569 (615)
T ss_dssp             EETTSCEEEEE
T ss_pred             EcCCCcEEEEE
Confidence            99999999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.55  E-value=4.6e-14  Score=79.77  Aligned_cols=79  Identities=13%  Similarity=0.064  Sum_probs=68.4

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecC-CCCeEEEEEECCCCCeEEEecCCC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEG-HKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      +...+.+|...|.+++|+   ++++.+++++.|+.+.+|++..+.   ....+.. |...|.+++|+|++.++++++.|+
T Consensus        92 ~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~  168 (377)
T 3dwl_C           92 QTLVLLRLNRAATFVRWS---PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR  168 (377)
T ss_dssp             CEEECCCCSSCEEEEECC---TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred             eeeEecccCCceEEEEEC---CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence            566778899999999999   799999999999999999998765   3567777 899999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++||
T Consensus       169 ~i~iwd  174 (377)
T 3dwl_C          169 KAYVLS  174 (377)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.55  E-value=5.1e-13  Score=74.81  Aligned_cols=81  Identities=12%  Similarity=0.031  Sum_probs=74.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC--
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD--   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d--   81 (88)
                      +++.+..+.+|...|.+++|+   ++++.+++++.|+.+.+|++.++..+..+. +...+..++|+|++..+++++.+  
T Consensus        63 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~  138 (369)
T 3zwl_B           63 NGERLGTLDGHTGTIWSIDVD---CFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVM  138 (369)
T ss_dssp             TCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBT
T ss_pred             CchhhhhhhhcCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCcc
Confidence            567788899999999999999   799999999999999999999888887777 77889999999999999999888  


Q ss_pred             ---CeEEEcC
Q psy6444          82 ---FQAKALK   88 (88)
Q Consensus        82 ---~~i~~~~   88 (88)
                         +.+++||
T Consensus       139 ~~~g~i~~~d  148 (369)
T 3zwl_B          139 KNPGSINIYE  148 (369)
T ss_dssp             TBCCEEEEEE
T ss_pred             CCCCEEEEEE
Confidence               9999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.54  E-value=7.4e-14  Score=80.97  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             EecCCCCCEEEEEEEecCCC---CcEEEEEeCCCCEEEEECCCCCEEEE-ecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444          10 TCSGHTRPVVHLAFSDITES---GYFLISACKDGKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .+.+|...|.+++|+   ++   +..+++++.|+.+++|++.++..+.. +.+|...|.+++|+ ++.++++++.|+.|+
T Consensus       190 ~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~  265 (450)
T 2vdu_B          190 PILGHVSMLTDVHLI---KDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIF  265 (450)
T ss_dssp             CSEECSSCEEEEEEE---ECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEE
T ss_pred             eeecccCceEEEEEc---CCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEE
Confidence            667899999999999   57   88999999999999999988887776 55899999999999 999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       266 vwd  268 (450)
T 2vdu_B          266 AWD  268 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.5e-13  Score=81.64  Aligned_cols=78  Identities=13%  Similarity=-0.035  Sum_probs=66.4

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-EEEEecCCCCeEEEE--EECCCC-CeEEEecCCC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-WIGTFEGHKGCVWGV--DINKDA-SKAASGAADF   82 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~--~~~~~~-~~~~~~~~d~   82 (88)
                      +...+.+|...|.+++|+   ++ ..+++++.|+.|++||+.++. ....+.+|...|.++  .|++++ .++++++.|+
T Consensus       258 p~~~l~~h~~~v~sv~~s---~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~  333 (524)
T 2j04_B          258 PSLTLSLADSLITTFDFL---SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG  333 (524)
T ss_dssp             CSEEECCTTTCEEEEEES---SS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred             ceEEEEcCCCCEEEEEec---CC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence            345788999999999998   44 489999999999999998653 445678899999998  568887 8899999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      ++++||
T Consensus       334 tvklWD  339 (524)
T 2j04_B          334 YFYIFN  339 (524)
T ss_dssp             EEEEEC
T ss_pred             eEEEEE
Confidence            999997

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.54  E-value=5.9e-14  Score=80.77  Aligned_cols=82  Identities=11%  Similarity=0.083  Sum_probs=71.1

Q ss_pred             ccceeEEecC--CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCeEEEEEECC----CCCeEE
Q psy6444           4 IRQIPLTCSG--HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINK----DASKAA   76 (88)
Q Consensus         4 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~~~   76 (88)
                      .++.+..+.+  |.+.|.+++|+   +++..+++++.|+.+++||+..+..+..+. .+...|.+++|+|    ++.+++
T Consensus       201 ~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          201 TLERLQIIENSPRHGAVSSICID---EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             TCCEEEEEECCGGGCCEEEEEEC---TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             CCeeeEEEccCCCCCceEEEEEC---CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence            4567778888  88999999999   799999999999999999999888888776 6778899996654    577899


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      +++.|+.+++||
T Consensus       278 s~~~dg~i~iwd  289 (437)
T 3gre_A          278 GGSSKTFLTIWN  289 (437)
T ss_dssp             EESTTEEEEEEE
T ss_pred             EEcCCCcEEEEE
Confidence            999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.1e-13  Score=78.77  Aligned_cols=82  Identities=10%  Similarity=0.084  Sum_probs=74.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--------------------EEEEecCCCC--
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--------------------WIGTFEGHKG--   61 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~--   61 (88)
                      .++.+..+..|...+.+++|+   ++++.+++++.++.+.+|++.++.                    .+..+..+..  
T Consensus       319 ~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (425)
T 1r5m_A          319 QNTLLALSIVDGVPIFAGRIS---QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND  395 (425)
T ss_dssp             TTEEEEEEECTTCCEEEEEEC---TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred             CCcEeEecccCCccEEEEEEc---CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence            456777888899999999999   799999999999999999998776                    7888888866  


Q ss_pred             eEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          62 CVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        62 ~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .|..++|+|++.++++++.|+.+++||
T Consensus       396 ~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          396 YIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             ceEEEEccCCCceEEEEecCceEEEEe
Confidence            999999999999999999999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.54  E-value=3.5e-13  Score=85.38  Aligned_cols=82  Identities=22%  Similarity=0.296  Sum_probs=75.6

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC--CCCeEEEecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK--DASKAASGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d   81 (88)
                      +++.+..+.+|.+.|.+++|+   ++++.+++++.|+.+.+|++.++..+..+.+|...+.+++|++  ++..+++++.|
T Consensus       646 ~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d  722 (1249)
T 3sfz_A          646 TGEKLLDIKAHEDEVLCCAFS---SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND  722 (1249)
T ss_dssp             TCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETT
T ss_pred             CCCEEEEeccCCCCEEEEEEe---cCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCC
Confidence            456788899999999999999   7999999999999999999999999999999999999999999  55578899999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus       723 ~~v~vwd  729 (1249)
T 3sfz_A          723 FFLKLWD  729 (1249)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            9999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.54  E-value=8.9e-14  Score=86.70  Aligned_cols=79  Identities=16%  Similarity=0.134  Sum_probs=68.3

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-----Eec-CCCCeEEEEEEC-----CCC--
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-----TFE-GHKGCVWGVDIN-----KDA--   72 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~i~~~~~~-----~~~--   72 (88)
                      +++..+.+|.+.|.+++|+   ++| ++++++.|+.+++||+.....+.     .+. +|...|++++|+     ||+  
T Consensus       566 ~~~~~l~~h~~~V~svafS---pdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~  641 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNS---NIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS  641 (902)
T ss_dssp             EEEEEECCCSCSEEEEEEC---BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred             ceeEEEEcCCCcEEEEEec---CCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence            3577889999999999999   799 99999999999999987665543     233 788999999999     885  


Q ss_pred             -CeEEEecCCCeEEEcC
Q psy6444          73 -SKAASGAADFQAKALK   88 (88)
Q Consensus        73 -~~~~~~~~d~~i~~~~   88 (88)
                       .++++++.|+++++||
T Consensus       642 ~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          642 SILMVCGTDMGEVITYK  658 (902)
T ss_dssp             EEEEEEEETTSEEEEEE
T ss_pred             ceEEEEEecCCcEEEEE
Confidence             7999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.53  E-value=2.2e-13  Score=76.34  Aligned_cols=72  Identities=15%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             CCCCEEEEEEEecCCC----CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITES----GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~~   88 (88)
                      |...+.+++|+|   +    +..+++++.|+.+.+|++.++..+..+.+|...|.+++|+| ++.++++++.|+.+++||
T Consensus        68 ~~~~v~~~~~~~---~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           68 ADENFYTCAWTY---DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             TTCCEEEEEEEE---CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             CCCcEEEEEecc---CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            557899999994   5    67999999999999999999998999999999999999999 899999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.5e-14  Score=85.93  Aligned_cols=78  Identities=10%  Similarity=0.044  Sum_probs=68.3

Q ss_pred             eEEecCCCC--CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           8 PLTCSGHTR--PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         8 ~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +.++.+|..  .|.+++|+   ++++.+++++.|+.+++|++..+..+..+.+|.+.|.+++|+|++..+++++.|++++
T Consensus       346 ~~~~~~~~~~~~v~~v~fs---p~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYC---PQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI  422 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEE---TTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred             ccccccccccCcccceEeC---CCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence            344555543  47889999   7899999999999999999998887788889999999999999999999999999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       423 lwd  425 (524)
T 2j04_B          423 ITN  425 (524)
T ss_dssp             CCB
T ss_pred             EEe
Confidence            996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.53  E-value=5.6e-13  Score=75.84  Aligned_cols=81  Identities=17%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.+|...+.++.|+   +++ .+++++.++.+.+|++.++..+..+..+...+..++|+|++.++++++.|+.
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWV---GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEE---TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCccceEecCCCccEEEEEEC---CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence            445677788899999999999   677 9999999999999999988888889999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       354 i~i~~  358 (425)
T 1r5m_A          354 VNVYD  358 (425)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.53  E-value=2.2e-13  Score=76.14  Aligned_cols=76  Identities=12%  Similarity=0.089  Sum_probs=66.4

Q ss_pred             EecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCC-------------------CEEEEecCCCCeEEEEEEC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTG-------------------DWIGTFEGHKGCVWGVDIN   69 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~~~~~~   69 (88)
                      .+.+|...+.+++|+   ++++ .+++++.|+.+.+|++..+                   ..+..+.+|...|..++|+
T Consensus       254 ~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s  330 (357)
T 3i2n_A          254 SEKAHKSTVWQVRHL---PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS  330 (357)
T ss_dssp             EEECCSSCEEEEEEE---TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred             ccCCCcCCEEEEEEC---CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence            344899999999999   7887 8999999999999998643                   2466778899999999999


Q ss_pred             CCCCeEE-EecCCCeEEEcC
Q psy6444          70 KDASKAA-SGAADFQAKALK   88 (88)
Q Consensus        70 ~~~~~~~-~~~~d~~i~~~~   88 (88)
                      |++.+++ +++.|+.+++||
T Consensus       331 ~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          331 PDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             SSSTTEEEEEETTSEEEEEE
T ss_pred             CCCCeEEEEecCCCcEEEEE
Confidence            9999998 899999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.52  E-value=1.8e-13  Score=76.95  Aligned_cols=81  Identities=17%  Similarity=0.149  Sum_probs=73.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .+..+..+.+|...+.+++|+   ++++.+++++.|+.+.+|++.++..+..+..+...+..++|+|++.+++++ .|+.
T Consensus       191 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~  266 (372)
T 1k8k_C          191 FGELMFESSSSCGWVHGVCFS---ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF  266 (372)
T ss_dssp             TTCEEEECCCCSSCEEEEEEC---SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS
T ss_pred             hhhheEecCCCCCeEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe
Confidence            456788888999999999999   799999999999999999999899999999999999999999999888776 8999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++|+
T Consensus       267 i~i~~  271 (372)
T 1k8k_C          267 PVLFT  271 (372)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            99985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.52  E-value=1.7e-13  Score=76.42  Aligned_cols=77  Identities=9%  Similarity=-0.026  Sum_probs=67.9

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC---EEEEecCCCCeEEEEEECCCCC-eEEEecCCCeE
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD---WIGTFEGHKGCVWGVDINKDAS-KAASGAADFQA   84 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i   84 (88)
                      ....+|.+.|.+++|+   ++++.+++++.|+.+.+|++..+.   .......|...|.+++|+|++. ++++++.|+.+
T Consensus         5 ~~~~~h~~~v~~~~~s---~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            5 QIEQAPKDYISDIKII---PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             ECSSCCSSCEEEEEEE---GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             ecccCCCCcEEEEEEc---CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence            3446799999999999   799999999999999999988766   3455667899999999999999 99999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus        82 ~~wd   85 (342)
T 1yfq_A           82 LKVD   85 (342)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9997

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.5e-13  Score=83.21  Aligned_cols=81  Identities=21%  Similarity=0.308  Sum_probs=73.2

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCC--CcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCC--CCeEEEe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITES--GYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKD--ASKAASG   78 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~~~   78 (88)
                      +..+..+.+|.+.|.+++|+   ++  ++.+++++.|+.+++|++.++.  .+..+.+|...|.+++|+|+  +..++++
T Consensus        43 ~~~~~~l~~h~~~V~~l~~s---~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg  119 (753)
T 3jro_A           43 HKLIDTLTGHEGPVWRVDWA---HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA  119 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEEC---CTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             CccceeccCCcCceEEEEec---CCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE
Confidence            45677889999999999998   56  8999999999999999998776  66778889999999999999  9999999


Q ss_pred             cCCCeEEEcC
Q psy6444          79 AADFQAKALK   88 (88)
Q Consensus        79 ~~d~~i~~~~   88 (88)
                      +.|+.+++||
T Consensus       120 s~dg~I~vwd  129 (753)
T 3jro_A          120 SSDGKVSVVE  129 (753)
T ss_dssp             ETTSEEEEEE
T ss_pred             eCCCcEEEEE
Confidence            9999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.51  E-value=7.5e-13  Score=75.78  Aligned_cols=82  Identities=23%  Similarity=0.118  Sum_probs=71.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEec--C
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGA--A   80 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~--~   80 (88)
                      .+..+..+.+|.+.|.+++|+   +++..+++++.|+.+.+||+.++..+..+..|...+.+++|+|++. .+++++  .
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          206 ANHQIGTLQGHSSEVCGLAWR---SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             SSCEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred             CcceeeEEcCCCCCeeEEEEc---CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence            355677888999999999999   7999999999999999999998888888999999999999999765 445544  7


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.+++||
T Consensus       283 d~~i~i~d  290 (401)
T 4aez_A          283 DKQIHFWN  290 (401)
T ss_dssp             TCEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.51  E-value=4.2e-13  Score=80.42  Aligned_cols=67  Identities=9%  Similarity=0.092  Sum_probs=59.3

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-------EEEEe----cCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-------WIGTF----EGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .+.+++|+   |+|+.+++++.|+.+++|++..+.       .+..+    .+|...|.+++|+|++  +++++.|++++
T Consensus       131 sv~svafS---PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr  205 (588)
T 2j04_A          131 TYHCFEWN---PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF  205 (588)
T ss_dssp             CEEEEEEC---SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred             cEEEEEEc---CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence            49999999   799999999999999999998764       25665    6677899999999999  77888999999


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       206 lWd  208 (588)
T 2j04_A          206 SMT  208 (588)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.50  E-value=1e-13  Score=79.24  Aligned_cols=82  Identities=23%  Similarity=0.219  Sum_probs=68.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC---CCCeEEE---------------
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG---HKGCVWG---------------   65 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~---------------   65 (88)
                      .++.+..+.+|...|.+++|+   +++..+++++.|+.+++|++.++..+..+..   +...+..               
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  246 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAII---DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS  246 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred             CCcCceEEcCCCCcEEEEEEc---CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence            456677889999999999999   7999999999999999999998887777764   3334444               


Q ss_pred             ------EEECCCCCeEEEecCCCeEEEcC
Q psy6444          66 ------VDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        66 ------~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                            ++|+|++.++++++.|+.+++||
T Consensus       247 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  275 (420)
T 3vl1_A          247 TSKKNNLEFGTYGKYVIAGHVSGVITVHN  275 (420)
T ss_dssp             CCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred             cCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence                  45578899999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.50  E-value=1.5e-12  Score=74.50  Aligned_cols=80  Identities=25%  Similarity=0.289  Sum_probs=71.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      .++.+..+.+|...|.+++|+     +..+++++.++.+.+|++. ....+..+.+|...|.+++|+|++.++++++.|+
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  239 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSWN-----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN  239 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCeEEEEecCCCCceEEEEEC-----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            456778888999999999997     5699999999999999998 4556788889999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++||
T Consensus       240 ~v~iwd  245 (401)
T 4aez_A          240 VVQIWD  245 (401)
T ss_dssp             CEEEEE
T ss_pred             eEEEcc
Confidence            999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.50  E-value=1.6e-13  Score=78.04  Aligned_cols=85  Identities=9%  Similarity=-0.039  Sum_probs=65.2

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCC---CeEEEEEECCCCCeE-----
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK---GCVWGVDINKDASKA-----   75 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~-----   75 (88)
                      +++.+..+.+|...+..++|+|++.+++.+++++.|+.|++||+.+++.+..+.++.   ..+..++|+|++..+     
T Consensus       167 dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~  246 (356)
T 2w18_A          167 DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH  246 (356)
T ss_dssp             TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred             CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence            456666777777777778887433367899999999999999999999999998653   356777899999876     


Q ss_pred             -------EEecCCCeEEEcC
Q psy6444          76 -------ASGAADFQAKALK   88 (88)
Q Consensus        76 -------~~~~~d~~i~~~~   88 (88)
                             ++++.|+++++||
T Consensus       247 ~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          247 PCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             -----------CCEEEEEEE
T ss_pred             CCCcceeeccCCCcEEEEEE
Confidence                   5677889999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.49  E-value=1.3e-12  Score=74.10  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=69.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCC-EEEEe---------------cCCCCeEEEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGD-WIGTF---------------EGHKGCVWGV   66 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~i~~~   66 (88)
                      .+..+..+.+|...|.+++|+   +++. .+++++.|+.+.+|++..+. .+..+               ..|...+..+
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~---~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWS---PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEEC---SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             CcceeeeecCCCCcEEEEEEC---CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            456677888999999999999   6776 68999999999999997654 22333               4678899999


Q ss_pred             EECCCCCeEEEecCCCeEEEcC
Q psy6444          67 DINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        67 ~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +|+|++.++++++.|+.+++||
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEecCCCeEEEEE
Confidence            9999999999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.49  E-value=8.5e-13  Score=76.29  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=70.8

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCC--------------CCEEEEecCCCCeEEEEEEC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDT--------------GDWIGTFEGHKGCVWGVDIN   69 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~~~   69 (88)
                      +.++..+.+|...|.+++|+   +++ ..+++++.|+.+.+|++..              ...+..+.+|...|..++|+
T Consensus       311 ~~~~~~~~~h~~~v~~i~~s---p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  387 (430)
T 2xyi_A          311 KLKLHSFESHKDEIFQVQWS---PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  387 (430)
T ss_dssp             TSCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred             CCCeEEeecCCCCEEEEEEC---CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence            45678888999999999999   566 5799999999999999875              25667788899999999999


Q ss_pred             CCCC-eEEEecCCCeEEEcC
Q psy6444          70 KDAS-KAASGAADFQAKALK   88 (88)
Q Consensus        70 ~~~~-~~~~~~~d~~i~~~~   88 (88)
                      |++. ++++++.|+.|++|+
T Consensus       388 p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          388 PNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             SSSTTEEEEEETTSEEEEEE
T ss_pred             CCCCCEEEEEECCCCEEEeE
Confidence            9998 888999999999995

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.48  E-value=2e-12  Score=71.70  Aligned_cols=77  Identities=22%  Similarity=0.213  Sum_probs=68.3

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ...+..|...+.+++|+   ++++.+++++.++.+.+|++.++..+... .+...+..++|+|++.++++++.|+.+++|
T Consensus       258 ~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          258 KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             eEEEcCCccceeEEEEC---CCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence            44677899999999999   79999999999999999999988776443 477889999999999999999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      +
T Consensus       334 ~  334 (337)
T 1gxr_A          334 E  334 (337)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.48  E-value=1.2e-12  Score=75.67  Aligned_cols=79  Identities=22%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC---CEEEEecCCCCeEEEEEECCCCC-eEEEecCCCe
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG---DWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQ   83 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~   83 (88)
                      ...+.+|...|.+++|+|  .++..+++++.++.+.+|++...   ..+..+..|...+.+++|+|++. .+++++.|+.
T Consensus       224 ~~~~~~h~~~v~~v~~~p--~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~  301 (430)
T 2xyi_A          224 KNIFTGHTAVVEDVAWHL--LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT  301 (430)
T ss_dssp             SEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             ceeecCCCCCEeeeEEeC--CCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence            456778999999999994  47789999999999999999876   45667778999999999999887 5789999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++||
T Consensus       302 v~vwd  306 (430)
T 2xyi_A          302 VALWD  306 (430)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.47  E-value=3.9e-13  Score=77.29  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=63.3

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-----------EEEEecCCC------------CeEEEEEECC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-----------WIGTFEGHK------------GCVWGVDINK   70 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~------------~~i~~~~~~~   70 (88)
                      +.+.|.+++|+   ++++.+++++.|+.+.+|++..+.           ....+.+|.            ..|..++|+|
T Consensus        27 ~~~~V~~v~~s---~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           27 EADIISTVEFN---HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             GGGSEEEEEEC---SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccCcEEEEEEC---CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            46789999999   799999999999999999988665           467788898            7899999999


Q ss_pred             CC--CeEEEecCCCeEEEcC
Q psy6444          71 DA--SKAASGAADFQAKALK   88 (88)
Q Consensus        71 ~~--~~~~~~~~d~~i~~~~   88 (88)
                      ++  ..+++++.|+.+++||
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~  123 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWK  123 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEE
T ss_pred             CCCcceEEEeCCCCeEEEEe
Confidence            98  7899999999999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.46  E-value=3.1e-12  Score=73.69  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             ccceeEEe--cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           4 IRQIPLTC--SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         4 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      +++....+  .+|...|.+++|+   ++|+.+++++.|+.+.+|++.++..+..+.+|...+.++.++  +..+++++.|
T Consensus       134 tg~~~~~~~~~~~~~~V~sv~fs---pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d  208 (420)
T 4gga_A          134 SGDILQLLQMEQPGEYISSVAWI---KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRS  208 (420)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CCCEEEEEEecCCCCcEEEEEEC---CCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCC
Confidence            34444444  4677889999999   899999999999999999999999999999999999888774  6789999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus       209 ~~i~~~d  215 (420)
T 4gga_A          209 GHIHHHD  215 (420)
T ss_dssp             SEEEEEE
T ss_pred             CceeEee
Confidence            9999885

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.46  E-value=1.1e-12  Score=75.41  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=65.3

Q ss_pred             EecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCE----EEEecCCCC------------eEEEEEECCCC
Q psy6444          10 TCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDW----IGTFEGHKG------------CVWGVDINKDA   72 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------~i~~~~~~~~~   72 (88)
                      .+.+|...|.+++|+   +++ ..+++++.|+.+++|++.++..    +..+..+..            .|.+++|+|++
T Consensus       221 ~~~~~~~~v~~~~~~---p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  297 (447)
T 3dw8_B          221 NMEELTEVITAAEFH---PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG  297 (447)
T ss_dssp             SGGGCCCCEEEEEEC---SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS
T ss_pred             cccccCcceEEEEEC---CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC
Confidence            356899999999999   677 9999999999999999987775    677777765            89999999999


Q ss_pred             CeEEEecCCCeEEEcC
Q psy6444          73 SKAASGAADFQAKALK   88 (88)
Q Consensus        73 ~~~~~~~~d~~i~~~~   88 (88)
                      .++++++. +.+++||
T Consensus       298 ~~l~~~~~-~~v~iwd  312 (447)
T 3dw8_B          298 RYMMTRDY-LSVKVWD  312 (447)
T ss_dssp             SEEEEEES-SEEEEEE
T ss_pred             CEEEEeeC-CeEEEEe
Confidence            99999888 9999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.46  E-value=1.2e-12  Score=73.11  Aligned_cols=80  Identities=13%  Similarity=-0.019  Sum_probs=64.5

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeC---CCCEEEEECCCCCEEEEe-cCCCCeEEEEEECCC---CCeEEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGY-FLISACK---DGKPMLRQGDTGDWIGTF-EGHKGCVWGVDINKD---ASKAAS   77 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~~~~   77 (88)
                      .....+.+|...|.+++|+   +++. ++++++.   |+.+.+|++.++...... ..|...|.+++|+|+   +.++++
T Consensus         9 ~~~~~~~~h~~~v~~~~~~---p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~   85 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWV---PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT   85 (357)
T ss_dssp             EEEEEEEECSSCEEEEEEC---TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred             HhhhhccCCCCceEEEEEc---CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence            3445567799999999999   6775 5556665   899999999877754333 368889999999998   699999


Q ss_pred             ecCCCeEEEcC
Q psy6444          78 GAADFQAKALK   88 (88)
Q Consensus        78 ~~~d~~i~~~~   88 (88)
                      ++.|+.+++||
T Consensus        86 ~~~dg~i~iwd   96 (357)
T 3i2n_A           86 GDFGGNLHIWN   96 (357)
T ss_dssp             EETTSCEEEEC
T ss_pred             ecCCCeEEEEe
Confidence            99999999997

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.46  E-value=8.4e-13  Score=79.15  Aligned_cols=70  Identities=11%  Similarity=0.056  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCC-----eEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG-----CVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      .|...|.+++|+   |+|+.+++++.++.+.+|+...  .+..+. |..     .+.+++|+|+|+++++++.|+++++|
T Consensus        83 ~~~~~V~~vawS---PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           83 QPVCYPRVCKPS---PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF  156 (588)
T ss_dssp             SCSCCEEEEEEC---SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CCCCcEEEEEEC---CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            456789999999   7999999999999999999643  556666 554     59999999999999999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       157 d  157 (588)
T 2j04_A          157 S  157 (588)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.46  E-value=8.6e-13  Score=75.19  Aligned_cols=73  Identities=18%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC----CCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCeEEEc
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT----GDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAKAL   87 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~i~~~   87 (88)
                      .|...|.+++|+   +++..+++++.|+.+.+|++..    ...+..+.+|...|.+++|+|+ +.++++++.|+.+++|
T Consensus        65 ~~~~~v~~~~~s---~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           65 QVDSKFNDLDWS---HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             CCSSCEEEEEEC---SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             ecCCceEEEEEC---CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            478899999999   7999999999999999999986    3477888899999999999998 8899999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       142 d  142 (416)
T 2pm9_A          142 D  142 (416)
T ss_dssp             B
T ss_pred             E
Confidence            7

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.44  E-value=3.7e-12  Score=71.00  Aligned_cols=76  Identities=8%  Similarity=0.020  Sum_probs=67.8

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEEC-CCCCEEEEecC--CCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQG-DTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      ...+.+|...|.+++|+   ++++ .+++++.++.+.+|++ ..+. ...+.+  |...|.+++|++ +..+++++.|+.
T Consensus        49 ~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~  123 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFI---DNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGL  123 (342)
T ss_dssp             EEEEEECSSCEEEEEEE---ESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSE
T ss_pred             ceeeeecCCceEEEEEC---CCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCe
Confidence            55566899999999999   6899 9999999999999999 7655 477788  999999999999 999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       124 i~iwd  128 (342)
T 1yfq_A          124 IEVID  128 (342)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99997

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.44  E-value=7.5e-12  Score=69.08  Aligned_cols=82  Identities=17%  Similarity=0.187  Sum_probs=62.8

Q ss_pred             ccceeEEec--CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec------------------------
Q psy6444           4 IRQIPLTCS--GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE------------------------   57 (88)
Q Consensus         4 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------   57 (88)
                      +++.+..++  +|...|.+++|+   ++++.+++++.|+.+++|++.+++.+..+.                        
T Consensus        54 tg~~~~~~~~~~~~~~V~~v~~~---~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~  130 (318)
T 4ggc_A           54 SGDILQLLQMEQPGEYISSVAWI---KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH  130 (318)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSE
T ss_pred             CCCEEEEEEecCCCCeEEEEEEC---CCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCc
Confidence            455555554  577889999999   899999999999999999998776554443                        


Q ss_pred             -----------------CCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          58 -----------------GHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        58 -----------------~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                                       +|...+..+.+.+++.++++++.|+.+++||
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  178 (318)
T 4ggc_A          131 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP  178 (318)
T ss_dssp             EEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence                             3455566667777777788888888888875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.44  E-value=6.4e-12  Score=72.59  Aligned_cols=78  Identities=24%  Similarity=0.347  Sum_probs=69.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.+|...+.++.++     ++.+++++.|+.+.+||+.++..+..+.+|...+.++++  ++..+++++.|+.
T Consensus       285 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~  357 (435)
T 1p22_A          285 TCEFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK  357 (435)
T ss_dssp             TCCEEEEEECCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             cCcEEEEEcCCCCcEEEEEeC-----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc
Confidence            456778888999999998876     679999999999999999999989999999999999988  6788999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       358 i~vwd  362 (435)
T 1p22_A          358 IKVWD  362 (435)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.41  E-value=9.3e-12  Score=71.92  Aligned_cols=78  Identities=18%  Similarity=0.237  Sum_probs=69.6

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +++.+..+.+|.+.|.+++|     +++.+++++.|+.+.+|++.++..+..+.+|...+.+++|++  ..+++++.|+.
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~-----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~  234 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRS  234 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSC
T ss_pred             CCeEEEEEcCCCCcEEEEEE-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCc
Confidence            45677888999999999876     478999999999999999999999999999999999999874  58899999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       235 i~vwd  239 (435)
T 1p22_A          235 IAVWD  239 (435)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.41  E-value=2.7e-12  Score=73.07  Aligned_cols=76  Identities=13%  Similarity=0.073  Sum_probs=63.4

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCC----CEEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDG----KPMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ...+|...+.+++|+   +++..+++++.++    .+..|+.....    ....+.+|...|.+++|+|++.++++++.|
T Consensus       214 ~~~~~~~~v~~v~fs---pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          214 TDFDKNWSLSKINFI---ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND  290 (365)
T ss_dssp             CCCCTTEEEEEEEEE---ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred             ecCCCCCCEEEEEEc---CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence            445688889999999   6999999988776    46778876543    235677888999999999999999999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      ++|++||
T Consensus       291 ~~V~iwd  297 (365)
T 4h5i_A          291 NSIALVK  297 (365)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEE
Confidence            9999997

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.39  E-value=1.9e-11  Score=70.69  Aligned_cols=78  Identities=23%  Similarity=0.300  Sum_probs=65.4

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.+|.+.|.++.|+     ++.+++++.|+.+.+|++.++..+..+.+|...|.++.++  +..+++++.|+.
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~  220 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMR-----DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDAT  220 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred             CCcEEEEEcCCCCCEEEEEec-----CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCE
Confidence            456777888899999888886     5688899999999999998888888888888888888885  567888889999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       221 i~~wd  225 (445)
T 2ovr_B          221 LRVWD  225 (445)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.38  E-value=2.8e-12  Score=74.41  Aligned_cols=82  Identities=15%  Similarity=0.023  Sum_probs=69.4

Q ss_pred             ccceeEEec--CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE----EecCCCCeEEEEEECCC---CCe
Q psy6444           4 IRQIPLTCS--GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG----TFEGHKGCVWGVDINKD---ASK   74 (88)
Q Consensus         4 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~   74 (88)
                      .+..+..+.  .|...+.+++|+   +++..+++++.++.+.+|++.++....    .+.+|...|.+++|+|+   +.+
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  212 (450)
T 2vdu_B          136 SKNVLKLRKRFCFSKRPNAISIA---EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF  212 (450)
T ss_dssp             SSSCEEEEEEEECSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE
T ss_pred             CCceeeeeecccCCCCceEEEEc---CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE
Confidence            345555665  466889999999   799999999999999999987665433    66778899999999999   889


Q ss_pred             EEEecCCCeEEEcC
Q psy6444          75 AASGAADFQAKALK   88 (88)
Q Consensus        75 ~~~~~~d~~i~~~~   88 (88)
                      +++++.|+.|++||
T Consensus       213 l~s~~~d~~i~vwd  226 (450)
T 2vdu_B          213 IITSDRDEHIKISH  226 (450)
T ss_dssp             EEEEETTSCEEEEE
T ss_pred             EEEEcCCCcEEEEE
Confidence            99999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.36  E-value=3.9e-11  Score=69.38  Aligned_cols=78  Identities=26%  Similarity=0.317  Sum_probs=64.6

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.+|...|.++.++     ++.+++++.|+.+.+|++.++..+..+.+|...+.++.+  ++..+++++.|+.
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~  260 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM  260 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred             cCcEEEEECCCCCcEEEEEec-----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence            456677888888888888876     457888889999999998888888888888888888887  6778888888898


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       261 i~iwd  265 (445)
T 2ovr_B          261 VKVWD  265 (445)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88886

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.30  E-value=2.2e-11  Score=69.87  Aligned_cols=82  Identities=13%  Similarity=-0.031  Sum_probs=63.3

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEE-------------------------ec
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGT-------------------------FE   57 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~   57 (88)
                      .+.++..+.+|...+.+++|+   |++ ..+++++.|+.+++||+.++.....                         ..
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~---p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFR---PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEE---TTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             CCceeeeecCCCCCcEEEEEC---CCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            345666777889999999999   565 5899999999999999976543221                         13


Q ss_pred             CCCCeEEEEEEC-CCCCeEEEecCCCeEEEcC
Q psy6444          58 GHKGCVWGVDIN-KDASKAASGAADFQAKALK   88 (88)
Q Consensus        58 ~~~~~i~~~~~~-~~~~~~~~~~~d~~i~~~~   88 (88)
                      +|...+..+.|+ +++..+++++.|+++++||
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred             cccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence            456677778875 7999999999999999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.29  E-value=3.8e-12  Score=74.10  Aligned_cols=72  Identities=22%  Similarity=0.108  Sum_probs=60.7

Q ss_pred             CCCCEEEEEEEecCCCCcEEE----EEeCCCCEEEEECCCC--------C---EEEEecCCCCeEEEEEECCC-CCeEEE
Q psy6444          14 HTRPVVHLAFSDITESGYFLI----SACKDGKPMLRQGDTG--------D---WIGTFEGHKGCVWGVDINKD-ASKAAS   77 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~i~~~~~~~~-~~~~~~   77 (88)
                      +...|.+++|+   ++++.++    +++.|+.+++|++.+.        +   .+..+.+|...|..++|+|+ +.++++
T Consensus        91 ~~~~v~~l~~s---pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           91 MKFPIHHLALS---CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             CSSCEEEEEEC---TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred             CCCcccEEEEc---CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence            45679999999   7999998    7888999999997543        1   24556678999999999998 788999


Q ss_pred             ecCCCeEEEcC
Q psy6444          78 GAADFQAKALK   88 (88)
Q Consensus        78 ~~~d~~i~~~~   88 (88)
                      ++.|+++++||
T Consensus       168 ~s~Dg~v~iwD  178 (434)
T 2oit_A          168 CLADGSIAVLQ  178 (434)
T ss_dssp             EETTSCEEEEE
T ss_pred             EECCCeEEEEE
Confidence            99999999997

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.22  E-value=1.5e-10  Score=66.42  Aligned_cols=76  Identities=8%  Similarity=-0.095  Sum_probs=66.6

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCeEEEcC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQAKALK   88 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~i~~~~   88 (88)
                      .+.+|.+.+.+++|+   +++..+++++.++.+.+|+..++..+..+..+...+..++|+|++..++ +++.++.+++||
T Consensus       164 ~~~~~~~~v~~~~~~---~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          164 KYKKKLGFVETISIP---EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID  240 (433)
T ss_dssp             HHHTTCCEEEEEEEG---GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCceeEEEEc---CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence            345788889999998   7899999999999999999998888888888888999999999999775 555889999986

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.19  E-value=4.4e-10  Score=65.03  Aligned_cols=80  Identities=13%  Similarity=0.048  Sum_probs=64.3

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC---CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDG---KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAA   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~   80 (88)
                      +...+.+.+|...+.+++|+   ++|+.+++++.++   .+.+|++.++... .+..+...+..++|+|++..++ +++.
T Consensus       168 g~~~~~l~~~~~~v~~~~~S---pdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~  243 (415)
T 2hqs_A          168 GYNQFVVHRSPQPLMSPAWS---PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSK  243 (415)
T ss_dssp             SCSCEEEEEESSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred             CCCCEEEeCCCCcceeeEEc---CCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEec
Confidence            44566777888899999999   7999999988875   8999999877754 5666778899999999999887 6665


Q ss_pred             CCe--EEEcC
Q psy6444          81 DFQ--AKALK   88 (88)
Q Consensus        81 d~~--i~~~~   88 (88)
                      ++.  |.+||
T Consensus       244 ~g~~~i~~~d  253 (415)
T 2hqs_A          244 TGSLNLYVMD  253 (415)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCCceEEEEE
Confidence            554  77765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.17  E-value=8.4e-10  Score=62.57  Aligned_cols=82  Identities=11%  Similarity=-0.024  Sum_probs=62.5

Q ss_pred             ccceeEEec-C-CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE--EEEecC---------------------
Q psy6444           4 IRQIPLTCS-G-HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--IGTFEG---------------------   58 (88)
Q Consensus         4 ~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------------   58 (88)
                      +++.+..+. + |...|.+++|+   ++++.+++++.|+.+++|++.....  ...+..                     
T Consensus       227 ~~~~~~~~~~g~h~~~v~~~~~s---~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (355)
T 3vu4_A          227 DGVLVREFRRGLDRADVVDMKWS---TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD  303 (355)
T ss_dssp             TCCEEEEEECTTCCSCEEEEEEC---TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred             CCcEEEEEEcCCCCCcEEEEEEC---CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence            456777887 5 99999999999   7999999999999999999865421  111100                     


Q ss_pred             CCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          59 HKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        59 ~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .......++|++++..++.++.|+.+++|+
T Consensus       304 ~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          304 KHVRGCKIAWISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             TTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            111124578999999999999999998874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.15  E-value=1.9e-09  Score=61.21  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=64.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d   81 (88)
                      .++.+..+..| ..+.+++|+   ++++.+ ++++.++.+.+|+..+++.+..+..+. .+..++|+|++..++ ++..+
T Consensus        21 ~~~~~~~~~~~-~~~~~~~~s---~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~   95 (391)
T 1l0q_A           21 SNKVTATIPVG-SNPMGAVIS---PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMAS   95 (391)
T ss_dssp             TTEEEEEEECS-SSEEEEEEC---TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTT
T ss_pred             CCeEEEEeecC-CCcceEEEC---CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCC
Confidence            45566667766 458999999   788866 677789999999998888877777554 889999999999775 55677


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus        96 ~~v~v~d  102 (391)
T 1l0q_A           96 STLSVID  102 (391)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEE
Confidence            9999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.05  E-value=1.1e-08  Score=58.82  Aligned_cols=81  Identities=11%  Similarity=-0.052  Sum_probs=65.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec---
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLI-SACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA---   79 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---   79 (88)
                      .++.+..+..|...+.+++|+   ++++.++ ++..++.+.+|++.++..+..+..+ ..+..++|+|++..+++++   
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYD---PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEE---TTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred             CceEEEEEcCCCCCeeEEEEc---CCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence            345667777888899999999   7887775 5557899999999888777666653 5689999999999888776   


Q ss_pred             -----CCCeEEEcC
Q psy6444          80 -----ADFQAKALK   88 (88)
Q Consensus        80 -----~d~~i~~~~   88 (88)
                           .|+.+++||
T Consensus       276 ~~~~~~dg~i~~~d  289 (433)
T 3bws_A          276 SNQESGGGRLGIYS  289 (433)
T ss_dssp             CTTCSCCEEEEEEE
T ss_pred             CccccCCCeEEEEE
Confidence                 478899886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.01  E-value=2.5e-08  Score=56.62  Aligned_cols=80  Identities=13%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeE-EEecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLI-SACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKA-ASGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~d   81 (88)
                      .++.+..+..+. .+.+++|+   ++++.++ ++..++.+.+|++.++..+..+..+ ..+..++|+|++..+ ++++.+
T Consensus        63 ~~~~~~~~~~~~-~v~~~~~s---pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~  137 (391)
T 1l0q_A           63 TNNVIATVPAGS-SPQGVAVS---PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD  137 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEEC---TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred             CCeEEEEEECCC-CccceEEC---CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence            445566666554 88999999   7888765 5556799999999988877766654 467899999999977 688889


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus       138 ~~v~~~d  144 (391)
T 1l0q_A          138 KTVSVIN  144 (391)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEE
Confidence            9999996

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.99  E-value=8.1e-09  Score=65.41  Aligned_cols=78  Identities=13%  Similarity=0.046  Sum_probs=65.0

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC------
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD------   81 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d------   81 (88)
                      ...+.+|...+..++|+   ++|+.+++++.++.+.+|++.++........+...+..++|+|++++++.++.+      
T Consensus       371 ~~~l~~~~~~~~~~~~S---pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~  447 (1045)
T 1k32_A          371 AEKFEENLGNVFAMGVD---RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD  447 (1045)
T ss_dssp             EEECCCCCCSEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred             ceEecCCccceeeeEEC---CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence            34455777889999999   899999999999999999999888766666788888899999999999876553      


Q ss_pred             ----CeEEEcC
Q psy6444          82 ----FQAKALK   88 (88)
Q Consensus        82 ----~~i~~~~   88 (88)
                          ..+++||
T Consensus       448 ~~~~~~i~l~d  458 (1045)
T 1k32_A          448 GYVMQAIHVYD  458 (1045)
T ss_dssp             SCCEEEEEEEE
T ss_pred             CCCCCeEEEEE
Confidence                3788885

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.97  E-value=3.2e-08  Score=59.24  Aligned_cols=80  Identities=15%  Similarity=0.069  Sum_probs=64.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEEC--CCCCEEEEecCCCCeEEEEEECC----CCCeEEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQG--DTGDWIGTFEGHKGCVWGVDINK----DASKAAS   77 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~   77 (88)
                      .++.+.++..+.. +..++|+   ++|+.+++++.++.+.+||+  .++..+..+. .......++|+|    +++++++
T Consensus       168 t~~~~~~i~~g~~-~~~v~~s---pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v  242 (543)
T 1nir_A          168 SKKIVKVIDTGYA-VHISRMS---ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIA  242 (543)
T ss_dssp             TCCEEEEEECSTT-EEEEEEC---TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEE
T ss_pred             CceEEEEEecCcc-cceEEEC---CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEE
Confidence            4566677764333 7889999   89999999999999999999  7777777776 445679999999    9999988


Q ss_pred             ec-CCCeEEEcC
Q psy6444          78 GA-ADFQAKALK   88 (88)
Q Consensus        78 ~~-~d~~i~~~~   88 (88)
                      ++ .++++.+||
T Consensus       243 ~~~~~~~v~v~D  254 (543)
T 1nir_A          243 GAYWPPQFAIMD  254 (543)
T ss_dssp             EEEESSEEEEEE
T ss_pred             EEccCCeEEEEe
Confidence            77 588999986

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.88  E-value=1.3e-07  Score=54.74  Aligned_cols=76  Identities=16%  Similarity=0.041  Sum_probs=57.8

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEE-EEeCCCC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecC-CC--
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLI-SACKDGK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA-DF--   82 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-d~--   82 (88)
                      ..+..|...+.+++|+   ++|+.++ +++.++.  +.+|++.++.. ..+..+...+..++|+|++..++.++. ++  
T Consensus       216 ~~l~~~~~~~~~~~~s---pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          216 RQVASFPRHNGAPAFS---PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP  291 (415)
T ss_dssp             EEEECCSSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             EEeecCCCcccCEEEc---CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence            4566788889999999   7998777 6666654  88889887664 566778888999999999998887664 45  


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+.+||
T Consensus       292 ~i~~~d  297 (415)
T 2hqs_A          292 QVYKVN  297 (415)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.87  E-value=4.4e-09  Score=62.78  Aligned_cols=78  Identities=6%  Similarity=-0.131  Sum_probs=63.1

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC--CEEEEECCCCCEEEEecCCCCeEEEEE--------ECCCCCeEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDG--KPMLRQGDTGDWIGTFEGHKGCVWGVD--------INKDASKAA   76 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~   76 (88)
                      ..+.+..|.+.+..++|+   ++|+.+++...++  .+.+|++..+... .+..+...+..+.        |+|++..++
T Consensus       186 ~~~~l~~~~~~~~~~~~S---pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  261 (582)
T 3o4h_A          186 GLRVFDSGEGSFSSASIS---PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV  261 (582)
T ss_dssp             CCEEECCSSCEEEEEEEC---TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             CceEeecCCCccccceEC---CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence            345677888889999999   8999999888888  7889999877766 6666666555556        999998888


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      +++.++.+++|+
T Consensus       262 ~~~~~g~~~l~~  273 (582)
T 3o4h_A          262 VARREGRSAVFI  273 (582)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEEcCCcEEEEE
Confidence            899999999884

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.83  E-value=5.1e-08  Score=52.94  Aligned_cols=72  Identities=10%  Similarity=0.065  Sum_probs=55.5

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEe-CCCCEEEEECC-CCCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISAC-KDGKPMLRQGD-TGDWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ....+..+...+..+.|+   ++++.++.++ .++.+.+|++. .+..+..+..+...+..+.|+|++.+++.++.+
T Consensus       164 ~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYS---PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             CEEECCCSSSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             cceEcccCCCccccceEC---CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence            345566677889999999   7898777655 58889999875 455567777777888899999999988876654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.78  E-value=4.4e-08  Score=53.19  Aligned_cols=76  Identities=12%  Similarity=-0.047  Sum_probs=57.7

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-CCEEEEecCC-CCeEEEEEECCCCCeEEEec--CCCe
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-GDWIGTFEGH-KGCVWGVDINKDASKAASGA--ADFQ   83 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~--~d~~   83 (88)
                      ...+..|...+.+++|+   ++++.++++. ++.+.+|++.. +........+ ...+..++|+|++.+++.++  .++.
T Consensus        34 ~~~~~~~~~~v~~~~~s---pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  109 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWS---PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGK  109 (297)
T ss_dssp             EEEEEEESSCCEEEEEC---TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred             eeeeccCCcceEeeEEC---CCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCc
Confidence            33555678889999999   7999988876 67899999987 7665555554 36678899999999998877  3344


Q ss_pred             EEEc
Q psy6444          84 AKAL   87 (88)
Q Consensus        84 i~~~   87 (88)
                      ..+|
T Consensus       110 ~~l~  113 (297)
T 2ojh_A          110 SAIY  113 (297)
T ss_dssp             CEEE
T ss_pred             ceEE
Confidence            4444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.73  E-value=5.8e-08  Score=55.06  Aligned_cols=83  Identities=14%  Similarity=0.017  Sum_probs=61.3

Q ss_pred             CccceeEEecCCCCCEEE-----EEEEecCCCCcEEEEEeC-CCC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCe
Q psy6444           3 SIRQIPLTCSGHTRPVVH-----LAFSDITESGYFLISACK-DGK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASK   74 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   74 (88)
                      ..+..+..+..|......     ++|+   ++|+.++..+. ++.  +.+|+...+.......++...+....|+|++..
T Consensus        18 ~~g~~~~~lt~~~~~~~~~~~~~~~~S---pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           18 STGAQVTRLTPPDVTCHRNYFYQKCFT---RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBC---TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             CCCcceEEecCCcccccchhhcCccCC---CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            456677788888766665     7899   89998888777 664  777788777665555555444445689999999


Q ss_pred             EEEecCCCeEEEcC
Q psy6444          75 AASGAADFQAKALK   88 (88)
Q Consensus        75 ~~~~~~d~~i~~~~   88 (88)
                      ++....+..+.+||
T Consensus        95 l~~~~~~~~l~~~d  108 (388)
T 3pe7_A           95 LFYVKDGRNLMRVD  108 (388)
T ss_dssp             EEEEETTTEEEEEE
T ss_pred             EEEEeCCCeEEEEE
Confidence            99888888888775

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.71  E-value=1e-07  Score=57.16  Aligned_cols=81  Identities=7%  Similarity=-0.091  Sum_probs=65.4

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe-------CCCCEEEEECCCCCEE-EEe--------cCCCCeEEEEEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC-------KDGKPMLRQGDTGDWI-GTF--------EGHKGCVWGVDI   68 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~--------~~~~~~i~~~~~   68 (88)
                      .+.++++.+|.+.+..+.++   ++++.+++..       .+..|.+||+.+.... ..+        ..+...+..+.|
T Consensus       410 ~~~v~~l~~~g~~~~~v~~~---pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  486 (543)
T 1nir_A          410 WKKVAELQGQGGGSLFIKTH---PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY  486 (543)
T ss_dssp             TSEEEEEECSCSCCCCEECC---TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred             CeEEEEEEcCCCCceEEEcC---CCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence            67788999988888889999   7999999887       2679999999987755 333        345788999999


Q ss_pred             CCCCCeEEEe-----cCCCeEEEcC
Q psy6444          69 NKDASKAASG-----AADFQAKALK   88 (88)
Q Consensus        69 ~~~~~~~~~~-----~~d~~i~~~~   88 (88)
                      +++|..++.+     +.++.|.+||
T Consensus       487 ~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          487 NKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             CSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCCCCEEEEEeecCCCCCCeEEEEE
Confidence            9999988754     2468999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.71  E-value=1.3e-07  Score=56.49  Aligned_cols=66  Identities=9%  Similarity=0.027  Sum_probs=54.3

Q ss_pred             EEEEEEecCCCCcEEEEEeCC----CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC--eEEEcC
Q psy6444          19 VHLAFSDITESGYFLISACKD----GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF--QAKALK   88 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~--~i~~~~   88 (88)
                      ..++|+   ++|+.+++++.+    ..+.+|++.++.. ..+..+...+..++|+|||+.++++..++  .|.+||
T Consensus       153 ~~~~~s---pDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d  224 (582)
T 3o4h_A          153 FGFVSD---IRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVD  224 (582)
T ss_dssp             CEEEEE---EETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEEC
T ss_pred             ceEEEC---CCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEc
Confidence            678899   699999977766    6788999876664 46677888899999999999999777777  788876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.66  E-value=5e-07  Score=50.08  Aligned_cols=69  Identities=13%  Similarity=-0.064  Sum_probs=55.2

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +...+..++|+   ++++.++.+  ++.+.+|+..+++.+..+... ..+..++|+|++.+++.++.++.+.+||
T Consensus       239 ~~~~~~~~~~s---~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          239 MDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             CSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CCCceeeEEEC---CCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            44456678999   799888877  688999999887776666533 4567889999999888888899999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.65  E-value=6.1e-07  Score=49.89  Aligned_cols=81  Identities=10%  Similarity=-0.030  Sum_probs=57.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCCE-EEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACK-DGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      .++.+..+..+.... .++|+   ++++.++.++. ++.+.+|+..++.. ...+..+......++|+|++.++++...+
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~s---~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  104 (331)
T 3u4y_A           29 TLEILNQITLGYDFV-DTAIT---SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGL  104 (331)
T ss_dssp             TCCEEEEEECCCCEE-EEEEC---SSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred             ccceeeeEEccCCcc-eEEEc---CCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCC
Confidence            345555555555556 89999   78986665555 78899999988776 55565555544448999999988855544


Q ss_pred             -C--eEEEcC
Q psy6444          82 -F--QAKALK   88 (88)
Q Consensus        82 -~--~i~~~~   88 (88)
                       +  .+.+||
T Consensus       105 ~~~~~i~v~d  114 (331)
T 3u4y_A          105 NHPFNMQSYS  114 (331)
T ss_dssp             SSSCEEEEEE
T ss_pred             CCcccEEEEE
Confidence             3  898885

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.65  E-value=3.3e-07  Score=58.28  Aligned_cols=80  Identities=5%  Similarity=-0.048  Sum_probs=62.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC----------CEEEEECCCCCEEEEecCCCCeEEEEEECCCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDG----------KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS   73 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   73 (88)
                      .++....+.+|.+.+..++|+   ++|++++.++.++          .+.+|++..+. +..+..+...+..+.|+|++.
T Consensus       409 tg~~~~~~~~~~~~v~~~~~S---pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          409 TGKPTVIERSREAMITDFTIS---DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             TCCEEEEEECSSSCCCCEEEC---TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred             CCceEEeccCCCCCccceEEC---CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence            344555555788888999999   8999888776643          79999998766 677777888888999999999


Q ss_pred             eEEEecCCCeEEEc
Q psy6444          74 KAASGAADFQAKAL   87 (88)
Q Consensus        74 ~~~~~~~d~~i~~~   87 (88)
                      .++..+.++..+.|
T Consensus       485 ~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          485 NLYYLSYRSLDPSP  498 (1045)
T ss_dssp             EEEEEESCCCCCEE
T ss_pred             EEEEEecccCCcCc
Confidence            98877766555544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.64  E-value=1.8e-07  Score=57.14  Aligned_cols=70  Identities=7%  Similarity=-0.087  Sum_probs=55.4

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeC-CC-----CEEEEECCCCCEEEEecCCC------------------------CeEE
Q psy6444          15 TRPVVHLAFSDITESGYFLISACK-DG-----KPMLRQGDTGDWIGTFEGHK------------------------GCVW   64 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~------------------------~~i~   64 (88)
                      ...+..++|+   ++|+.+++++. ++     .+.+|++.++.....+..+.                        ..+.
T Consensus        36 ~~~~~~~~~S---pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVA---PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEEC---TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEe---cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            3468899999   89999999888 77     89999998887655554432                        2367


Q ss_pred             EEEECCCCCeEEEecCCCeEEEcC
Q psy6444          65 GVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        65 ~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .++|+|++++++.++. +.+.+||
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d  135 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYD  135 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEE
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEE
Confidence            8899999999987765 8888885

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.64  E-value=9.2e-07  Score=49.40  Aligned_cols=68  Identities=9%  Similarity=0.068  Sum_probs=54.5

Q ss_pred             EEEEEEEecCCCCcEEEEEe--CCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISAC--KDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..+.|+   ++++.++.+.  .++.+.+||..++..+..+..+...+..+.|+|++..++.+..++.+.+||
T Consensus       143 ~~~~~~s---~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d  212 (353)
T 3vgz_A          143 PRELVAD---DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITID  212 (353)
T ss_dssp             EEEEEEE---TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEE
T ss_pred             CceEEEC---CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEE
Confidence            6788999   7888766655  467899999988887777764555577889999999888888889888875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.64  E-value=1e-06  Score=49.23  Aligned_cols=81  Identities=9%  Similarity=0.083  Sum_probs=60.6

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC----CCCeEEEEEECCCCCeEEEec-
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG----HKGCVWGVDINKDASKAASGA-   79 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~-   79 (88)
                      ++.+..+..+...+..+.|+   ++++.++.+..++.+.+||..++..+..+..    +...+..++|+|++..++.++ 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  250 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALD---SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS  250 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEE---TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred             CceEEEecCCCCccceEEEC---CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence            44555555444556778899   7999999998899999999988877666553    445677899999999766544 


Q ss_pred             CCCeEEEcC
Q psy6444          80 ADFQAKALK   88 (88)
Q Consensus        80 ~d~~i~~~~   88 (88)
                      .++.+.+||
T Consensus       251 ~~~~v~~~d  259 (353)
T 3vgz_A          251 KAAEVLVVD  259 (353)
T ss_dssp             SSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            558888875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.58  E-value=1.3e-07  Score=57.54  Aligned_cols=80  Identities=9%  Similarity=-0.029  Sum_probs=58.1

Q ss_pred             ccceeEEecCCCC---CEEEEEEEecCCCCcEEEEEeCC---------CCEEEEECCCCCEEEEe---cCCCCeEEEEEE
Q psy6444           4 IRQIPLTCSGHTR---PVVHLAFSDITESGYFLISACKD---------GKPMLRQGDTGDWIGTF---EGHKGCVWGVDI   68 (88)
Q Consensus         4 ~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~   68 (88)
                      .++....+..|..   .+..++|+   ++|+.+++++.+         +.+.+|++.++.. ..+   ..+...+..++|
T Consensus        46 ~g~~~~~~~~~~~~~~~v~~~~~S---pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~  121 (723)
T 1xfd_A           46 TNTSTVLIEGKKIESLRAIRYEIS---PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGW  121 (723)
T ss_dssp             GCCCEEEECTTTTTTTTCSEEEEC---TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCB
T ss_pred             CCcEEEEeccccccccccceEEEC---CCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEE
Confidence            3445555666654   38899999   899999988764         5677999987764 233   234445778899


Q ss_pred             CCCCCeEEEecCCCeEEEcC
Q psy6444          69 NKDASKAASGAADFQAKALK   88 (88)
Q Consensus        69 ~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +|+|+.++.++. +.+++||
T Consensus       122 SPdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A          122 GPKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             CSSTTCEEEEET-TEEEEES
T ss_pred             CCCCCEEEEEEC-CeEEEEE
Confidence            999999987765 6788875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.57  E-value=3.5e-07  Score=55.88  Aligned_cols=66  Identities=9%  Similarity=0.034  Sum_probs=53.5

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..++|+   ++|+.++.++. +.+.+|++..+.  .+..+..+...+..++|+|++++++.++ ++.|.+||
T Consensus       111 v~~~~~S---pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d  178 (741)
T 2ecf_A          111 IVDYQWS---PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVID  178 (741)
T ss_dssp             SCCCEEC---TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             cceeEEC---CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEe
Confidence            6788999   89999998886 889999998762  3455666778899999999999988765 45788875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.52  E-value=1.4e-06  Score=48.44  Aligned_cols=71  Identities=7%  Similarity=0.023  Sum_probs=53.0

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCC-CCEEEEECC--CCC--EEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKD-GKPMLRQGD--TGD--WIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL   87 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~   87 (88)
                      +...+..++|+   ++++.++.++.+ +.+.+|++.  .+.  .+..+.... .+..++|+|++.+++.++ .++.+.+|
T Consensus        36 ~~~~~~~~~~s---pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           36 VPGQVQPMVVS---PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             CSSCCCCEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEEC---CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence            55677789999   799988887776 899999987  444  333444333 678899999999776554 58889988


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       112 d  112 (343)
T 1ri6_A          112 R  112 (343)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.52  E-value=7.1e-06  Score=45.21  Aligned_cols=79  Identities=8%  Similarity=-0.052  Sum_probs=61.9

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +..+..+..+......+.|+   ++++ .+++...++.+..|+...+  ...+......+..+++++++.++++...++.
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d---~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~   91 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYV---PARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR   91 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEE---GGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred             CCcEEEEecCCccccCCeEe---CCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence            34455666666778899999   7887 7778888889999998766  5666666777899999999998887776777


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |.+||
T Consensus        92 i~~~d   96 (296)
T 3e5z_A           92 LERQR   96 (296)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            87775

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.51  E-value=1e-05  Score=45.11  Aligned_cols=79  Identities=19%  Similarity=0.119  Sum_probs=58.8

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCC----C
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD----F   82 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d----~   82 (88)
                      ....+..+...+..++|+   ++++.+++...++.+.+|+...+............+..+++++++.++++...+    +
T Consensus        36 ~~~~~~~~~~~~~~~~~~---~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFD---RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             EEEEEESSCCCEEEEEEC---TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred             eeEEEeccCccccCcEEC---CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence            344555666677899999   789887788888899999987766544333455778999999999988776555    5


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .|.+||
T Consensus       113 ~i~~~d  118 (333)
T 2dg1_A          113 GIFAAT  118 (333)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            677664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.51  E-value=2.3e-06  Score=47.66  Aligned_cols=67  Identities=9%  Similarity=-0.080  Sum_probs=53.3

Q ss_pred             CCEEEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          16 RPVVHLAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        16 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..+..+.++   + +++.++.+  ++.+.+|+..+++.+..+... ..+..++|++++.+++.++.++.+.+||
T Consensus       255 ~~~~~~~~s---p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          255 ELYFTGLRS---PKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             SCEEEEEEC---SSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             CcceeeEec---CCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEe
Confidence            456778888   7 99888877  778999999888766666532 3467889999998888778889999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.46  E-value=3.1e-06  Score=47.50  Aligned_cols=74  Identities=15%  Similarity=0.127  Sum_probs=51.8

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEe-CCCCEEEEECCC-CC--EEEEecC---------CCCeEEEEEECCCCCeEEEe
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISAC-KDGKPMLRQGDT-GD--WIGTFEG---------HKGCVWGVDINKDASKAASG   78 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~~~~~   78 (88)
                      ..+...+..++|+   ++|+.++.++ .++.+.+|++.. +.  .+..+..         ....+..++|+|++..+++.
T Consensus        82 ~~~~~~p~~~a~s---pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~  158 (347)
T 3hfq_A           82 VAPGTPPAYVAVD---EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID  158 (347)
T ss_dssp             EEESCCCSEEEEE---TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE
T ss_pred             ecCCCCCEEEEEC---CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe
Confidence            3355567788999   7999888777 678899999853 22  2232221         11247789999999966666


Q ss_pred             cCCCeEEEcC
Q psy6444          79 AADFQAKALK   88 (88)
Q Consensus        79 ~~d~~i~~~~   88 (88)
                      ..++.+.+|+
T Consensus       159 ~~~~~v~~~~  168 (347)
T 3hfq_A          159 LGSDKVYVYN  168 (347)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            7788898885

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.42  E-value=4.3e-06  Score=46.91  Aligned_cols=68  Identities=12%  Similarity=0.052  Sum_probs=50.5

Q ss_pred             CEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCC---CEEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444          17 PVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTG---DWIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL   87 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~   87 (88)
                      .+..++|+   ++|+.+ ++...++.+.+|++...   ..+..+..+...+..++|+|++++++.++ .++.+.+|
T Consensus       241 ~~~~i~~s---pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          241 GAAAIRLS---HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEEEEEEC---TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cceeEEEC---CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            36778999   799876 45556788999998622   34455555556678899999999887665 45888888

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.41  E-value=4.7e-07  Score=55.13  Aligned_cols=67  Identities=13%  Similarity=-0.002  Sum_probs=49.0

Q ss_pred             EEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC-----CCEEEEecCCCCe--------------EEEEEEC
Q psy6444           9 LTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT-----GDWIGTFEGHKGC--------------VWGVDIN   69 (88)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------i~~~~~~   69 (88)
                      ..+..+...+..++|+   ++|+.++.. .++.+.+|++..     +............              +..+.|+
T Consensus       114 ~~l~~~~~~~~~~~~S---pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S  189 (706)
T 2z3z_A          114 TYLFDTNEETASLDFS---PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS  189 (706)
T ss_dssp             EEEECCTTCCTTCEEC---TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred             EEccCCcccccCCcCC---CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence            3445566677888999   799998885 578999999987     6654433333222              4778999


Q ss_pred             CCCCeEEEec
Q psy6444          70 KDASKAASGA   79 (88)
Q Consensus        70 ~~~~~~~~~~   79 (88)
                      |++++++.++
T Consensus       190 pDg~~la~~~  199 (706)
T 2z3z_A          190 PKGSCLAFYR  199 (706)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999998776

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.41  E-value=8.8e-06  Score=45.92  Aligned_cols=71  Identities=15%  Similarity=0.084  Sum_probs=50.5

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEe-CCCCEEEEECCCCCE--EEEe---cCCCCeEEEEEECCCCCeEEEecC--CCeEEE
Q psy6444          15 TRPVVHLAFSDITESGYFLISAC-KDGKPMLRQGDTGDW--IGTF---EGHKGCVWGVDINKDASKAASGAA--DFQAKA   86 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~~~~~~~~--d~~i~~   86 (88)
                      ......++|+   ++|+.++... .++.+.+|++..+..  +..+   ..+......++|+|++++++.+..  ++.+.+
T Consensus       210 ~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          210 GSGPRHLIFN---SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             TCCEEEEEEC---TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             CCCCeEEEEc---CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence            3456789999   7998777666 578899999875543  2222   223345678999999998865554  578888


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      |+
T Consensus       287 ~~  288 (361)
T 3scy_A          287 FK  288 (361)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.41  E-value=6.2e-06  Score=45.84  Aligned_cols=77  Identities=8%  Similarity=0.037  Sum_probs=53.9

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC---CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecCCCe
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDG---KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAADFQ   83 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~   83 (88)
                      ...+..+..+..+++|+   ++++.++....++   .+.+|+...+..+..+... .....++|+|++++++ +...++.
T Consensus        76 ~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDIT---PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             EEEEEECSSCCCCEEEC---TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTT
T ss_pred             EEecccCCCCccceEEC---CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCc
Confidence            44455555555448899   7999888554442   8999999888777666543 4458899999998555 4455566


Q ss_pred             -EEEcC
Q psy6444          84 -AKALK   88 (88)
Q Consensus        84 -i~~~~   88 (88)
                       +.+|+
T Consensus       152 ~i~~~~  157 (331)
T 3u4y_A          152 TVRRFK  157 (331)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence             88764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.40  E-value=2.9e-07  Score=56.17  Aligned_cols=64  Identities=9%  Similarity=0.015  Sum_probs=50.2

Q ss_pred             EEEEEEEecCCCCcEEEEEeC---------CCCEEEEECCCCCEE--EEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          18 VVHLAFSDITESGYFLISACK---------DGKPMLRQGDTGDWI--GTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      +..++|+   ++|+.++.++.         ++.+.+|++.++..+  ..+   ...+..++|+|+|+.++.+. ++.|++
T Consensus        62 ~~~~~~S---pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~  134 (719)
T 1z68_A           62 ASNYGLS---PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYL  134 (719)
T ss_dssp             CSEEEEC---TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEE
T ss_pred             eeeEEEC---CCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEE
Confidence            7789999   89999988776         678999999876542  222   24577789999999998764 678988


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      ||
T Consensus       135 ~~  136 (719)
T 1z68_A          135 KQ  136 (719)
T ss_dssp             ES
T ss_pred             Ee
Confidence            86

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.39  E-value=3.5e-06  Score=46.79  Aligned_cols=67  Identities=6%  Similarity=0.008  Sum_probs=49.0

Q ss_pred             CEEEEEEEecCCCCcEEE-EEeCCCCEEEEECC--CC--CEEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444          17 PVVHLAFSDITESGYFLI-SACKDGKPMLRQGD--TG--DWIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL   87 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~   87 (88)
                      .+..++|+   ++++.++ +...++.+.+|++.  .+  ..+..+..+.. +..++|+|++..++.++ .++.+.+|
T Consensus       232 ~~~~i~~s---~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~  304 (343)
T 1ri6_A          232 WAADIHIT---PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVY  304 (343)
T ss_dssp             CEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             CccceEEC---CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEE
Confidence            45678999   7887766 55578899999987  22  23444444433 77899999999877666 67899988

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.37  E-value=3.5e-06  Score=51.36  Aligned_cols=68  Identities=10%  Similarity=-0.048  Sum_probs=50.7

Q ss_pred             EEEEEEEecCCCCcEEEEEe---------------------------------CCCCEEEEECCCCCEEEEec--CCCCe
Q psy6444          18 VVHLAFSDITESGYFLISAC---------------------------------KDGKPMLRQGDTGDWIGTFE--GHKGC   62 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~   62 (88)
                      +..+.|+   ++|+.++.++                                 .+..+.+|++.++.......  .+...
T Consensus       183 ~~~~~~S---pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          183 EKGTFWS---PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             CCSEEEC---TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             CceEEEC---CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence            4788999   8999998886                                 33568899998766433332  45677


Q ss_pred             EEEEEECCCCCeEEEecCCC-----eEEEcC
Q psy6444          63 VWGVDINKDASKAASGAADF-----QAKALK   88 (88)
Q Consensus        63 i~~~~~~~~~~~~~~~~~d~-----~i~~~~   88 (88)
                      +..++|+|++..++.++.+.     .+.+||
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d  290 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYD  290 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEE
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEE
Confidence            89999999999888766554     677764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.34  E-value=1.1e-05  Score=45.57  Aligned_cols=68  Identities=10%  Similarity=0.021  Sum_probs=49.4

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCC--CCEEEEECC--CCC--EEEEecCCCCeEEEEEECCCCCeEEEec-CCCeEEEc
Q psy6444          16 RPVVHLAFSDITESGYFLISACKD--GKPMLRQGD--TGD--WIGTFEGHKGCVWGVDINKDASKAASGA-ADFQAKAL   87 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~   87 (88)
                      .....++|+   ++|++++.+..+  +.+.+|++.  ++.  .+..+.. ...+..++|+|++++++.++ .++.+.+|
T Consensus       259 ~~~~~i~~s---pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          259 QGSGDIHLS---PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             CCEEEEEEC---TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CCcccEEEC---CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            446789999   799988666554  789999985  344  3344444 45677899999999887665 67888885

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.32  E-value=5.5e-06  Score=46.15  Aligned_cols=82  Identities=7%  Similarity=-0.068  Sum_probs=56.7

Q ss_pred             ccceeEEecCCC-CCEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCCCEEEEecCCC------CeEEEEEECCCCCeE
Q psy6444           4 IRQIPLTCSGHT-RPVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTGDWIGTFEGHK------GCVWGVDINKDASKA   75 (88)
Q Consensus         4 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~   75 (88)
                      +++.+..+..+. ..+..++|+   ++++.+ ++...++.+.+|+..+++.+..+....      ..+..++|+|+++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~s---~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  106 (349)
T 1jmx_B           30 SDTVYKSCVMPDKFGPGTAMMA---PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV  106 (349)
T ss_dssp             TTEEEEEEECSSCCSSCEEEEC---TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE
T ss_pred             CCcEEEEEecCCCCCCceeEEC---CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEE
Confidence            344555555433 246678899   788755 455567889999998887766655321      235678999999988


Q ss_pred             EEecCC------------CeEEEcC
Q psy6444          76 ASGAAD------------FQAKALK   88 (88)
Q Consensus        76 ~~~~~d------------~~i~~~~   88 (88)
                      +.++.+            +.+.+||
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~i~~~d  131 (349)
T 1jmx_B          107 YATVNPTQRLNDHYVVKPPRLEVFS  131 (349)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             EEEcccccccccccccCCCeEEEEE
Confidence            877654            7888875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.31  E-value=6.7e-06  Score=50.18  Aligned_cols=67  Identities=9%  Similarity=-0.156  Sum_probs=47.8

Q ss_pred             EEEEEEecCCCCcEEEEEeCCC----------------------------------CEEEEECCCCCEEEEecCC-----
Q psy6444          19 VHLAFSDITESGYFLISACKDG----------------------------------KPMLRQGDTGDWIGTFEGH-----   59 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~-----   59 (88)
                      ..+.|+   ++|+.++.++.+.                                  .+.+|++.++.....+..+     
T Consensus       176 ~~~~~S---pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          176 IAHWWS---PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             EEEEEC---TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             ceEEEC---CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence            689999   8999888876542                                  6788888776644444433     


Q ss_pred             -CCeEEEEEECCCCCeEEEecC----CCeEEEcC
Q psy6444          60 -KGCVWGVDINKDASKAASGAA----DFQAKALK   88 (88)
Q Consensus        60 -~~~i~~~~~~~~~~~~~~~~~----d~~i~~~~   88 (88)
                       ...+..++|+|++++++....    +..+.+||
T Consensus       253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence             567889999999998865432    24566664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.30  E-value=3.4e-06  Score=51.07  Aligned_cols=71  Identities=11%  Similarity=-0.022  Sum_probs=51.9

Q ss_pred             eeEEecC-----CCCCEEEEEEEecCCCCcEEEEEeCC----------CCEEEEECCC------CCEEEEec-CCCCeEE
Q psy6444           7 IPLTCSG-----HTRPVVHLAFSDITESGYFLISACKD----------GKPMLRQGDT------GDWIGTFE-GHKGCVW   64 (88)
Q Consensus         7 ~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------~~~~~~~~-~~~~~i~   64 (88)
                      ....+..     |...+..++|+   ++|+.++..+.+          ..+.+|++..      +. ...+. .+...+.
T Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~s---pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~  191 (662)
T 3azo_A          116 VPRPLTPVSAVGGGLRWADPVLL---PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVT  191 (662)
T ss_dssp             CCEECSCCCCSTTCEEEEEEEEE---TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEEC
T ss_pred             CCEeccCCccCCCCccccCcEEC---CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCccc
Confidence            3445555     56678899999   899999888766          4688899876      44 34444 5556777


Q ss_pred             EEEECCCCCeEEEecCC
Q psy6444          65 GVDINKDASKAASGAAD   81 (88)
Q Consensus        65 ~~~~~~~~~~~~~~~~d   81 (88)
                      .++|+|||++++..+.+
T Consensus       192 ~~~~SpDG~~la~~~~~  208 (662)
T 3azo_A          192 GPRLSPDGRQAVWLAWD  208 (662)
T ss_dssp             CCEECTTSSEEEEEEEC
T ss_pred             CceECCCCCEEEEEECC
Confidence            88999999999866543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.29  E-value=7e-06  Score=49.74  Aligned_cols=77  Identities=14%  Similarity=0.013  Sum_probs=53.8

Q ss_pred             eEEec-CCCCCEEEEEEEecCCCCcEEEEEeCCC--------CEEEEECC-CC---CEEEEecCCCCeEEEEEECCCCCe
Q psy6444           8 PLTCS-GHTRPVVHLAFSDITESGYFLISACKDG--------KPMLRQGD-TG---DWIGTFEGHKGCVWGVDINKDASK   74 (88)
Q Consensus         8 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~   74 (88)
                      ...+. .+...+..++|+   ++|+.++..+.++        .+.+|++. ++   ........+...+..+.|+|++++
T Consensus       179 ~~~l~~~~~~~~~~~~~S---pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          179 VRELSDDAHRFVTGPRLS---PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             SEESSCSCSSEECCCEEC---TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             eeEEEecCCCcccCceEC---CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence            34455 555667788999   8999888776543        68889987 45   332333344678889999999997


Q ss_pred             EEEecCCC--eEEEc
Q psy6444          75 AASGAADF--QAKAL   87 (88)
Q Consensus        75 ~~~~~~d~--~i~~~   87 (88)
                      ++++..++  .|.+|
T Consensus       256 ~~~~~~~~~~~l~~~  270 (662)
T 3azo_A          256 IVATDRTGWWNLHRV  270 (662)
T ss_dssp             EEEECTTSSCEEEEE
T ss_pred             EEEECCCCCeEEEEE
Confidence            77777777  44444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.29  E-value=5.3e-06  Score=51.18  Aligned_cols=80  Identities=11%  Similarity=-0.079  Sum_probs=57.6

Q ss_pred             ccceeEEecCCCCC-----EEEEEEEecCCCCcEEEEEeCC---------CCEEEEECCCCCEEEEecCCCCeEEEEEEC
Q psy6444           4 IRQIPLTCSGHTRP-----VVHLAFSDITESGYFLISACKD---------GKPMLRQGDTGDWIGTFEGHKGCVWGVDIN   69 (88)
Q Consensus         4 ~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   69 (88)
                      +++....+.+|+..     ...+.|+   ++|+.++.++.+         +.+.+|++.++.. ..+..+...+...+||
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~S---pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~~~S  120 (740)
T 4a5s_A           45 YGNSSVFLENSTFDEFGHSINDYSIS---PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWS  120 (740)
T ss_dssp             TCCEEEEECTTTTTTCCSCCCEEEEC---TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEEC
T ss_pred             CCceEEEEechhhhhhcccccceEEC---CCCCEEEEEECCeeeEEEccceEEEEEECCCCcE-EEcccCCCcceeeEEC
Confidence            34445556666532     2337889   899998888775         4566999987664 4466667788999999


Q ss_pred             CCCCeEEEecCCCeEEEcC
Q psy6444          70 KDASKAASGAADFQAKALK   88 (88)
Q Consensus        70 ~~~~~~~~~~~d~~i~~~~   88 (88)
                      |||+.++.+ .++.|.+||
T Consensus       121 PdG~~la~~-~~~~i~~~~  138 (740)
T 4a5s_A          121 PVGHKLAYV-WNNDIYVKI  138 (740)
T ss_dssp             SSTTCEEEE-ETTEEEEES
T ss_pred             CCCCEEEEE-ECCeEEEEE
Confidence            999999876 467788775

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.28  E-value=4.1e-05  Score=41.88  Aligned_cols=78  Identities=17%  Similarity=0.255  Sum_probs=55.9

Q ss_pred             ceeEEecCC--CCCEEEEEEEecCCCCcEEEEEeCCC-CEEEEECCCCCEEEEecCCC--CeEEEEEECCCCCeEEEecC
Q psy6444           6 QIPLTCSGH--TRPVVHLAFSDITESGYFLISACKDG-KPMLRQGDTGDWIGTFEGHK--GCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         6 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~   80 (88)
                      ..+..+..+  ......++++   ++|..+++...++ .+.+|+. .+..+..+..+.  ..+..+++++++.++++ +.
T Consensus       195 ~~~~~~~~~g~~~~p~~i~~d---~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~  269 (286)
T 1q7f_A          195 QYLRQIGGEGITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SK  269 (286)
T ss_dssp             CEEEEESCTTTSCSEEEEEEC---TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET
T ss_pred             CEEEEEccCCccCCCcEEEEC---CCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CC
Confidence            344444332  3567889998   7898888887775 8999995 466666665433  34778999999987777 56


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      ++.+++|+
T Consensus       270 ~~~v~v~~  277 (286)
T 1q7f_A          270 DYRLYIYR  277 (286)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEEE
Confidence            89999984

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.27  E-value=6.6e-06  Score=45.56  Aligned_cols=81  Identities=10%  Similarity=0.046  Sum_probs=55.4

Q ss_pred             cceeEEecCCC-C-CEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCCCEEEEecCC-----CCeEEEEEECCCCCeEE
Q psy6444           5 RQIPLTCSGHT-R-PVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTGDWIGTFEGH-----KGCVWGVDINKDASKAA   76 (88)
Q Consensus         5 ~~~~~~~~~~~-~-~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~   76 (88)
                      ++.+..+.... . .+..++|+   ++++.+ ++...++.+.+|+..++..+..+...     ...+..++|+|++..++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~   97 (337)
T 1pby_B           21 MAVDKVITIADAGPTPMVPMVA---PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEEC---TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CcEEEEEEcCCCCCCccceEEc---CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEE
Confidence            44555544322 1 46778899   788655 55666788999999888876665532     12456789999998887


Q ss_pred             Eec------------CCCeEEEcC
Q psy6444          77 SGA------------ADFQAKALK   88 (88)
Q Consensus        77 ~~~------------~d~~i~~~~   88 (88)
                      .+.            .++.+.+||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~v~d  121 (337)
T 1pby_B           98 IYESPVRLELTHFEVQPTRVALYD  121 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEE
T ss_pred             EEecccccccccccccCceEEEEE
Confidence            764            468888875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.25  E-value=6.2e-05  Score=42.77  Aligned_cols=71  Identities=13%  Similarity=0.059  Sum_probs=51.3

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeC-CCCEEEEECC-CCCEE--EEec--CCCCeEEEEEECCCCCeEEEec-CCCeEEE
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACK-DGKPMLRQGD-TGDWI--GTFE--GHKGCVWGVDINKDASKAASGA-ADFQAKA   86 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~--~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~   86 (88)
                      +...+..++|+   ++|+.++.+.. +..+.+|++. ++...  ..+.  .+...+..++|+|++++++.++ .++.+.+
T Consensus       143 ~~~~~~~~~~s---pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v  219 (365)
T 1jof_A          143 ENTGIHGMVFD---PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             TTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCcceEEEEC---CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence            34568889999   79988776654 5689999987 56532  2333  2345688999999999887655 4678887


Q ss_pred             c
Q psy6444          87 L   87 (88)
Q Consensus        87 ~   87 (88)
                      |
T Consensus       220 ~  220 (365)
T 1jof_A          220 Y  220 (365)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.25  E-value=7e-05  Score=42.05  Aligned_cols=71  Identities=14%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCC------------------------CCEEEEECCCCCEEEEec-CCCCeEEEEEEC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKD------------------------GKPMLRQGDTGDWIGTFE-GHKGCVWGVDIN   69 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~   69 (88)
                      .+.+..++++   ++|+.+++...+                        +.+.+|+..++..+..+. ++......++++
T Consensus        23 l~~v~~va~d---~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALD---SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEEC---TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC
T ss_pred             cCCceEEEEC---CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC
Confidence            4678899999   789998888776                        368899988787665554 344678899999


Q ss_pred             CCCCeEEEecCCCeEEEcC
Q psy6444          70 KDASKAASGAADFQAKALK   88 (88)
Q Consensus        70 ~~~~~~~~~~~d~~i~~~~   88 (88)
                      +++..+++...++.|++||
T Consensus       100 ~~g~l~v~d~~~~~v~~~~  118 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLD  118 (329)
T ss_dssp             TTSCEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEe
Confidence            9999888888888898875

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.22  E-value=1.2e-05  Score=45.89  Aligned_cols=62  Identities=5%  Similarity=0.048  Sum_probs=49.1

Q ss_pred             EEEEecCCCCcEEEEEeC-----------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          21 LAFSDITESGYFLISACK-----------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++++   +++..++....           ...+.+||..+.+.+..+..+.  ...++|+|+++++++++. +.+.+||
T Consensus       259 ~a~~---~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D  331 (361)
T 2oiz_A          259 VGLH---RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD  331 (361)
T ss_dssp             EEEE---TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred             EEEe---cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence            5677   67766665432           2368899999998888888766  899999999998887776 8999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.19  E-value=2e-06  Score=52.59  Aligned_cols=65  Identities=9%  Similarity=0.004  Sum_probs=49.6

Q ss_pred             EEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCC---eEEEEEECCCCCeEEEecC---------CCeEEEc
Q psy6444          20 HLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGAA---------DFQAKAL   87 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~---------d~~i~~~   87 (88)
                      .+.|+   ++++.+++ +.++.+.+|++..+.....+..+..   .+..++|+||+++++.++.         ++.+++|
T Consensus        20 ~~~~s---~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWI---SGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEES---SSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEEC---CCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            67899   78865554 4689999999988876655554432   3788999999999987665         6788888


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus        96 d   96 (719)
T 1z68_A           96 D   96 (719)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.18  E-value=2.2e-05  Score=45.70  Aligned_cols=67  Identities=13%  Similarity=0.024  Sum_probs=50.2

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...|...+..+.+.+  +   .++.+..||.+.+|++..+....    ....|.+++|+|+|  ++.+..|+++++|+
T Consensus       122 ~~~~~~~v~~i~~~~--p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~  188 (388)
T 1xip_A          122 VTSFEKPVFQLKNVN--N---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFA  188 (388)
T ss_dssp             EEECSSCEEEEEECS--S---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEE
T ss_pred             cceeecceeeEEecC--C---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEc
Confidence            445566777776652  2   38888999999999998766543    33578999999999  55677889988873

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.17  E-value=0.00014  Score=39.79  Aligned_cols=71  Identities=13%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC--CCeEEEEEECCCCCeEEEecCCC-eEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH--KGCVWGVDINKDASKAASGAADF-QAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~d~-~i~~~~   88 (88)
                      +...+..++++   ++++.+++...++.|.+|+.. +..+..+...  ...+..+++++++.++++...++ .|.+||
T Consensus       162 ~~~~p~~i~~~---~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          162 HLEFPNGVVVN---DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             TCSSEEEEEEC---SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             ccCCcEEEEEC---CCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence            44567889999   788888877778899999974 5655666443  35778999999999888877775 898886

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.14  E-value=3.1e-05  Score=43.48  Aligned_cols=80  Identities=11%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             cceeEEec--CCCCCEEEEEEEecCCCCcEEEEEe-------CCCCEEEEECCCCCEEEEec---CCCCeEEEEEECCCC
Q psy6444           5 RQIPLTCS--GHTRPVVHLAFSDITESGYFLISAC-------KDGKPMLRQGDTGDWIGTFE---GHKGCVWGVDINKDA   72 (88)
Q Consensus         5 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~   72 (88)
                      ++.+..+.  .+...+..++++   + +..+.+.+       .+..+.+|+..++..+..+.   .+......+++++++
T Consensus       228 G~~~~~~~~~~~~~~~~~~~~~---p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG  303 (329)
T 3fvz_A          228 KEFVREIKHASFGRNVFAISYI---P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG  303 (329)
T ss_dssp             CCEEEEECCTTTTTCEEEEEEE---T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred             CcEEEEEeccccCCCcceeeec---C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence            44444543  244567778887   6 43444333       23478899998888877763   566778999999999


Q ss_pred             CeEEEecCCCeEEEcC
Q psy6444          73 SKAASGAADFQAKALK   88 (88)
Q Consensus        73 ~~~~~~~~d~~i~~~~   88 (88)
                      ..+++...++.|++|+
T Consensus       304 ~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          304 TVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EEEEEESSSCCEEEEE
T ss_pred             CEEEEECCCCEEEEEe
Confidence            8888888888998874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.11  E-value=4.6e-06  Score=47.24  Aligned_cols=82  Identities=15%  Similarity=0.064  Sum_probs=52.6

Q ss_pred             CccceeEEecCCCCC-----EEEEEEEecCCCCcEEEEEeCC-C--CEEEEECCCCCEEEEecCCCCeE-EEEEECCCCC
Q psy6444           3 SIRQIPLTCSGHTRP-----VVHLAFSDITESGYFLISACKD-G--KPMLRQGDTGDWIGTFEGHKGCV-WGVDINKDAS   73 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~   73 (88)
                      ..+..+..+..+...     +..++|+   ++|+.++..... +  .+.+|+...+... .+....... ....|+|+++
T Consensus        18 ~~g~~~~~l~~~~~~~~~~~~~~~~~S---pdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           18 DTQVKVTRLTPTDIICHRNYFYQKCFT---QDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBC---TTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTTTCEECTTSS
T ss_pred             CCCcceEEEecCCCCccceeeecCcCC---CCCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccccceECCCCC
Confidence            345556666655433     5667889   799887766543 3  5677788766543 333332222 2367899999


Q ss_pred             eEEEecCCCeEEEcC
Q psy6444          74 KAASGAADFQAKALK   88 (88)
Q Consensus        74 ~~~~~~~d~~i~~~~   88 (88)
                      .++..+.+..+.+||
T Consensus        94 ~l~~~~~~~~l~~~d  108 (396)
T 3c5m_A           94 AFFYVKNELNLMKVD  108 (396)
T ss_dssp             EEEEEETTTEEEEEE
T ss_pred             EEEEEEcCCcEEEEE
Confidence            998877777787764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.10  E-value=1.3e-05  Score=49.20  Aligned_cols=66  Identities=15%  Similarity=0.017  Sum_probs=45.6

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCC-----CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDG-----KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      |+..+..++|+   ++|+.++.+..++     .+.+|++.++......... ..+..++|+||++.++.++.+..
T Consensus       123 ~~~~~~~~~~S---PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~  193 (710)
T 2xdw_A          123 GTVALRGYAFS---EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQ  193 (710)
T ss_dssp             SCEEEEEEEEC---TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCC
T ss_pred             CCEEEEEEEEC---CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCc
Confidence            33457788999   8999888665533     7999999887755432221 12456899999998887665543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.08  E-value=8.7e-05  Score=42.38  Aligned_cols=64  Identities=11%  Similarity=0.154  Sum_probs=51.9

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC--CEEEEecCCCCeEEEEEECCCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG--DWIGTFEGHKGCVWGVDINKDAS   73 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~   73 (88)
                      .++.+.++..+.  ...++|+   ++|+.+++++. +.+.+||..++  +.+..+.......+.+.++|+|.
T Consensus       295 t~~~v~~i~~~~--p~~ia~s---pdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          295 TKQRVARIPGRD--ALSMTID---QQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTEEEEEEECTT--CCEEEEE---TTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCcEEEEEecCC--eeEEEEC---CCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            356667777765  7889999   79999888876 89999999998  88888766667778889999875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.02  E-value=1.2e-05  Score=45.64  Aligned_cols=69  Identities=6%  Similarity=-0.077  Sum_probs=47.5

Q ss_pred             CEEEEE-EEecCCCCcEEEEEeCCC------CEEEEECC-CCCEEE---EecCCCCeEEEEEECC---CCCeEEEecC-C
Q psy6444          17 PVVHLA-FSDITESGYFLISACKDG------KPMLRQGD-TGDWIG---TFEGHKGCVWGVDINK---DASKAASGAA-D   81 (88)
Q Consensus        17 ~v~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~---~~~~~~~~i~~~~~~~---~~~~~~~~~~-d   81 (88)
                      .+..++ |+   ++|+.++.+..+.      .+.+|++. ++....   ....+......++|+|   ++.+++.++. +
T Consensus       255 ~~~~i~~~s---pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~  331 (365)
T 1jof_A          255 YRADVCALT---FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE  331 (365)
T ss_dssp             EEEEEEEEC---TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred             ccccEEEEC---CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC
Confidence            477899 99   7998887665432      79999985 455332   1322333445678899   7998888775 4


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+.+|+
T Consensus       332 ~~v~v~~  338 (365)
T 1jof_A          332 GWLEIYR  338 (365)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            8898884

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.99  E-value=7.8e-06  Score=50.14  Aligned_cols=65  Identities=17%  Similarity=0.049  Sum_probs=44.5

Q ss_pred             CCCCEEEEEEEecCCCCcEEEE-----EeCCCCEEEEECCCCCEE-E-EecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444          14 HTRPVVHLAFSDITESGYFLIS-----ACKDGKPMLRQGDTGDWI-G-TFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      |+..+..++|+   ++|+.++.     ++.+..|.+|++.++..+ . .+...  ....++|+|++..++.++.+..
T Consensus       119 ~~~~~~~~~~S---PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~  190 (695)
T 2bkl_A          119 GTVSLGTWAVS---WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTD  190 (695)
T ss_dssp             SCEEEEEEEEC---TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCC
T ss_pred             CCEEEEEEEEC---CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecCCCEEEEEEecCC
Confidence            44468889999   79998873     333457999999887753 1 11111  1156799999999987776554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.91  E-value=0.00052  Score=37.79  Aligned_cols=69  Identities=7%  Similarity=-0.037  Sum_probs=50.6

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKAL   87 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~   87 (88)
                      .....++++   ++|...++...++.+..|+..++..+..+..+...+..+++++++. ++++...++.+..+
T Consensus       226 ~~p~~i~~d---~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~  295 (314)
T 1pjx_A          226 GGADGMDFD---EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             CEEEEEEEB---TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEC---CCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence            446678888   7888888877778899999875665555555557788999999998 44555556666654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.89  E-value=0.0011  Score=40.38  Aligned_cols=79  Identities=16%  Similarity=0.064  Sum_probs=57.1

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC--CCCEEEEecCCCCeEEEEEEC----CCCCeEEEe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD--TGDWIGTFEGHKGCVWGVDIN----KDASKAASG   78 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~   78 (88)
                      ++.+..+... ..+..+.++   ++|++++.++.++.+.++|+.  +...+..+... .....++++    |++++++.+
T Consensus       187 ~~v~~~i~~g-~~p~~v~~S---pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~  261 (567)
T 1qks_A          187 YEIKTVLDTG-YAVHISRLS---ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAG  261 (567)
T ss_dssp             CCEEEEEECS-SCEEEEEEC---TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEE
T ss_pred             CeEEEEEeCC-CCccceEEC---CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEE
Confidence            3445455432 345678899   899999999999999999995  66666666543 346788999    699988765


Q ss_pred             c-CCCeEEEcC
Q psy6444          79 A-ADFQAKALK   88 (88)
Q Consensus        79 ~-~d~~i~~~~   88 (88)
                      + .++++.++|
T Consensus       262 n~~~~~v~ViD  272 (567)
T 1qks_A          262 AYWPPQYVIMD  272 (567)
T ss_dssp             EEETTEEEEEE
T ss_pred             EccCCeEEEEE
Confidence            5 557777764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.87  E-value=0.00059  Score=36.84  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=51.9

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .....++++   ++|..+++...++.+..|+................+..+++++++..+++...++.|++++
T Consensus       192 ~~p~~i~~d---~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          192 TAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CSEEEEEEC---TTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCceEEEEC---CCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            557788888   7887777777788899998764433222222335688999999999888888899998874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.87  E-value=0.00014  Score=40.70  Aligned_cols=59  Identities=14%  Similarity=0.028  Sum_probs=40.9

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCC---CC--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec
Q psy6444          16 RPVVHLAFSDITESGYFLISACKD---GK--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      ..+..+.|+   |+|+.++....+   +.  +.++++..+........ .. +..+.|+|++..++..+
T Consensus        59 ~~~~~~~~S---pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A           59 ENATMPRIS---PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             ESCEEEEEC---TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEE
T ss_pred             ccCCCeEEC---CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEE
Confidence            346678999   799888876653   23  66777776554333332 23 88899999999887655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.87  E-value=1.7e-05  Score=48.95  Aligned_cols=61  Identities=10%  Similarity=0.021  Sum_probs=46.6

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCe-----EEEEEECCCCCeEEEecCC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGC-----VWGVDINKDASKAASGAAD   81 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~d   81 (88)
                      .....+.|+   ++++.+++.  ++.+.+|++.++.....+.++...     .....|+||+++++.++.+
T Consensus        17 ~~~~~~~w~---~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~   82 (740)
T 4a5s_A           17 LKLYSLRWI---SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY   82 (740)
T ss_dssp             CCCCCEEEC---SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred             ccccccEEC---CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence            345578999   799888886  889999999988876666665422     2347889999999877665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.77  E-value=0.00049  Score=39.00  Aligned_cols=64  Identities=14%  Similarity=-0.087  Sum_probs=44.9

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEE--EECCCCCeEEE
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGV--DINKDASKAAS   77 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~   77 (88)
                      ..++...+..+.|+   ++++.++....+..+.+|++.++........+...+...  .+++++..++.
T Consensus        76 t~~~~~~~~~~~~s---pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~  141 (388)
T 3pe7_A           76 TEGRGDNTFGGFLS---PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG  141 (388)
T ss_dssp             CCSSCBCSSSCEEC---TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred             eeCCCCCccceEEc---CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence            33444444456799   899999999988899999998887655555555544333  34888887763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.73  E-value=0.00024  Score=39.27  Aligned_cols=59  Identities=17%  Similarity=0.036  Sum_probs=46.5

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCC-CeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK-GCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..++.+++++.++.+.+||..+++.+..+..+. ..+..+.+.|+++.+++  .+..+..||
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d   62 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMIT   62 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEEC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEEC
Confidence            457889999999999999998899888887765 46778889999998884  355565554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.72  E-value=0.00027  Score=43.54  Aligned_cols=68  Identities=9%  Similarity=0.024  Sum_probs=47.2

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCC----------------EEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEE
Q psy6444          18 VVHLAFSDITESGYFLISACKDGK----------------PMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAAS   77 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~   77 (88)
                      +..++|+   ++|+.++.+..+..                +.+|++.++.    .+.....+...+..+.|+|++++++.
T Consensus       173 ~~~~~ws---pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          173 FSCMAWT---HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             SCCEEEC---TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             cceEEEE---eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence            4568899   79998888877655                8889987654    22222234556778899999998875


Q ss_pred             ecC-----CCeEEEcC
Q psy6444          78 GAA-----DFQAKALK   88 (88)
Q Consensus        78 ~~~-----d~~i~~~~   88 (88)
                      .+.     +..+.+||
T Consensus       250 ~~~~~~~~~~~l~~~d  265 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCD  265 (710)
T ss_dssp             EEECSSSSCCEEEEEE
T ss_pred             EEEccCCCccEEEEEE
Confidence            443     45676664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.69  E-value=0.00045  Score=42.53  Aligned_cols=61  Identities=7%  Similarity=-0.109  Sum_probs=44.9

Q ss_pred             EEEEEEecCCCCcEEEEEeCCCC-------------EEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444          19 VHLAFSDITESGYFLISACKDGK-------------PMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      ..++|+   ++|+.++..+.+..             +.+|++.++.    .+.....+...+..+.|+|++++++..+.+
T Consensus       171 ~~~~ws---pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          171 ATPKWT---PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             CCCEEC---TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             cceEEe---cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC
Confidence            568899   89999998887665             9999987654    333333445678889999999988765544


Q ss_pred             C
Q psy6444          82 F   82 (88)
Q Consensus        82 ~   82 (88)
                      +
T Consensus       248 ~  248 (695)
T 2bkl_A          248 G  248 (695)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.68  E-value=0.0015  Score=35.90  Aligned_cols=72  Identities=21%  Similarity=0.103  Sum_probs=49.5

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECC-CCCE---EEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGD-TGDW---IGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ..+......++|+   ++++.+++...++.+.+|++. .+..   ...+......+..+++.+++.++++.  ++.|.+|
T Consensus       168 ~~~~~~~~gi~~s---~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          168 IRDRVKPNGLAFL---PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             ECCCSSEEEEEEC---TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             ecCCCCCccEEEC---CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence            3444556788999   789888777777889999986 3443   22333334455678899999877665  6777777


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       243 ~  243 (296)
T 3e5z_A          243 T  243 (296)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.65  E-value=0.0022  Score=36.99  Aligned_cols=79  Identities=13%  Similarity=-0.091  Sum_probs=52.5

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCC-------CCeEEEEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGH-------KGCVWGVD   67 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~   67 (88)
                      ++.+..+.....+  .+.++   ++|+.++.+.          .+..+.++|..+.+.+..+...       ......+.
T Consensus        57 ~~~~~~i~~g~~p--~i~~s---pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~  131 (373)
T 2mad_H           57 GSILGHVNGGFLP--NPVAA---HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA  131 (373)
T ss_pred             CeEEEEecCCCCC--CeEEC---CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceE
Confidence            4444444443333  78899   7998888775          2567889999877766655322       12235789


Q ss_pred             ECCCCCeEEEecC--CCeEEEcC
Q psy6444          68 INKDASKAASGAA--DFQAKALK   88 (88)
Q Consensus        68 ~~~~~~~~~~~~~--d~~i~~~~   88 (88)
                      ++|++++++.++.  +..+.++|
T Consensus       132 ~spDG~~l~v~n~~~~~~v~viD  154 (373)
T 2mad_H          132 NTPNNADLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             ECCCCCEEEEEecCCCCeEEEEE
Confidence            9999998887653  46677664

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.58  E-value=0.0023  Score=35.36  Aligned_cols=78  Identities=10%  Similarity=0.006  Sum_probs=56.7

Q ss_pred             ccceeEEecCCC-CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC-CCeEEEEEECCCCCeEEEecC-
Q psy6444           4 IRQIPLTCSGHT-RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH-KGCVWGVDINKDASKAASGAA-   80 (88)
Q Consensus         4 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~-   80 (88)
                      +++.+-.+..+. ..+..+.+.   ++|+.+++  .++.+..|+. +++.+..+... ...+....+.+++..+++.+. 
T Consensus        24 tG~~~w~~~~~~~~~~~~~~~~---pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~   97 (276)
T 3no2_A           24 TKEIVWEYPLEKGWECNSVAAT---KAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH   97 (276)
T ss_dssp             TTEEEEEEECCTTCCCCEEEEC---TTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST
T ss_pred             CCeEEEEeCCCccCCCcCeEEC---CCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCC
Confidence            566676776655 356778888   79998883  3567888998 78887777764 346778888999998887665 


Q ss_pred             CCeEEEc
Q psy6444          81 DFQAKAL   87 (88)
Q Consensus        81 d~~i~~~   87 (88)
                      ++.+..+
T Consensus        98 ~~~v~~v  104 (276)
T 3no2_A           98 PSTILEV  104 (276)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEE
Confidence            5555544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.57  E-value=0.001  Score=37.69  Aligned_cols=72  Identities=11%  Similarity=-0.105  Sum_probs=45.8

Q ss_pred             CCCCCEEEEEEEecCC-CCcEEEEEeCC------CCEEEEECCCCCEEEEecCC--CCeEEEEEECCCCCeEEEecCC--
Q psy6444          13 GHTRPVVHLAFSDITE-SGYFLISACKD------GKPMLRQGDTGDWIGTFEGH--KGCVWGVDINKDASKAASGAAD--   81 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~d--   81 (88)
                      .+...+..+.|+   + ++..++....+      ..+.+++...+.. ..+..+  ...+..+.|+|++..++..+.+  
T Consensus       185 ~~~~~~~~~~~s---p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~  260 (396)
T 3c5m_A          185 QDTAWLGHPIYR---PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG  260 (396)
T ss_dssp             EESSCEEEEEEE---TTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred             cCCcccccceEC---CCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCC
Confidence            345667888999   6 78766665543      3577888764442 233322  2357788999999977655332  


Q ss_pred             ---CeEEEcC
Q psy6444          82 ---FQAKALK   88 (88)
Q Consensus        82 ---~~i~~~~   88 (88)
                         +.+.+||
T Consensus       261 ~~~~~l~~~d  270 (396)
T 3c5m_A          261 QTDRVIYKAN  270 (396)
T ss_dssp             TCCEEEEEEC
T ss_pred             CccceEEEEE
Confidence               3377775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.56  E-value=0.0022  Score=34.57  Aligned_cols=69  Identities=10%  Similarity=0.149  Sum_probs=49.7

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ....++++   ++++.+++...++.+..|+................+..+++.+++..+++...++.+.+||
T Consensus       151 ~p~~i~~~---~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          151 DPDGVAVD---NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             SCCCEEEC---TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             CceeEEEe---CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence            45678888   7888777776677899998875554332233336678899999998777777778888775

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.45  E-value=0.0037  Score=34.68  Aligned_cols=77  Identities=9%  Similarity=-0.019  Sum_probs=53.5

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      .+..+.........+.|+   ++++ .+++...++.+..|+. .+. ...+......+..+.++++++++++...++.|.
T Consensus        36 ~~~~l~~~~~~~egp~~~---~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWW---EAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             CCEEEECCCSSEEEEEEE---GGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             ceEEEecCCcCccCCeEe---CCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence            344555556667889999   6887 6677777788999987 344 344444556678899999999777655556666


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      .|+
T Consensus       111 ~~~  113 (305)
T 3dr2_A          111 RSD  113 (305)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            553

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.44  E-value=0.0014  Score=39.89  Aligned_cols=58  Identities=12%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..+++...++.+.++|..+++.+..+... .....+.++|+++++..++.|+.+.+||
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD  224 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMID  224 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEE
Confidence            346667777889999999988888777643 3566899999999988888899998875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.40  E-value=0.00094  Score=38.65  Aligned_cols=80  Identities=11%  Similarity=-0.230  Sum_probs=55.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCC-------CCeEEEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGH-------KGCVWGV   66 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~   66 (88)
                      ..+.+.++.....+  .+.++   +++..++.+.          .++.+.++|..+.+.+..+...       ......+
T Consensus        55 t~~v~~~i~vG~~P--~i~~s---pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~i  129 (368)
T 1mda_H           55 CGVTLGHSLGAFLS--LAVAG---HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII  129 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEEC---TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred             CCeEEEEEeCCCCC--ceEEC---CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceE
Confidence            34555555554455  68899   7898777765          3577999999999888777532       1234567


Q ss_pred             EECCCCCeEEEecC--CCeEEE--cC
Q psy6444          67 DINKDASKAASGAA--DFQAKA--LK   88 (88)
Q Consensus        67 ~~~~~~~~~~~~~~--d~~i~~--~~   88 (88)
                      .++|+++++..+..  +..+.+  +|
T Consensus       130 a~SpDGk~lyVan~~~~~~v~V~~iD  155 (368)
T 1mda_H          130 GNCASSACLLFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             EECTTSSCEEEEECSSSCEEEEEETT
T ss_pred             EEcCCCCEEEEEccCCCCeEEEEEEc
Confidence            89999998886653  356776  65

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.30  E-value=0.0012  Score=38.59  Aligned_cols=79  Identities=11%  Similarity=0.009  Sum_probs=53.2

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCCC-------CeEEEEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGHK-------GCVWGVD   67 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~   67 (88)
                      .+.+..+.....+ . +.++   ++|+.++.+.          .+..+.+||..+.+.+..+....       .....+.
T Consensus        69 ~~v~~~I~vG~~P-~-va~s---pDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a  143 (386)
T 3sjl_D           69 GRVIGMIDGGFLP-N-PVVA---DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS  143 (386)
T ss_dssp             TEEEEEEEECSSC-E-EEEC---TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred             CeEEEEEECCCCC-c-EEEC---CCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence            4444455444444 3 8889   7998777665          35679999999888777664211       2345678


Q ss_pred             ECCCCCeEEEecC--CCeEEEcC
Q psy6444          68 INKDASKAASGAA--DFQAKALK   88 (88)
Q Consensus        68 ~~~~~~~~~~~~~--d~~i~~~~   88 (88)
                      ++|+++++..+..  ++.+.++|
T Consensus       144 ~spDGk~lyVan~~~~~~VsVID  166 (386)
T 3sjl_D          144 LTPDGKTLLFYQFSPAPAVGVVD  166 (386)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEE
T ss_pred             EcCCCCEEEEEEcCCCCeEEEEE
Confidence            9999998876653  57787765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.27  E-value=0.0055  Score=35.82  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=48.5

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +.. |..++|.     +.+++.+ .++.+.+|++..-........+...+..+.+.+.  .++.+..||.+.+||
T Consensus        87 lp~-V~~l~fd-----~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~d  152 (388)
T 1xip_A           87 IPD-VIFVCFH-----GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALD  152 (388)
T ss_dssp             CTT-EEEEEEE-----TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEE
T ss_pred             CCC-eeEEEEC-----CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEE
Confidence            445 8888883     7788877 7789999998765544445555566777776654  277788999999985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.26  E-value=0.0062  Score=33.11  Aligned_cols=75  Identities=13%  Similarity=0.070  Sum_probs=53.3

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-EecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+..+...+..+.++   ++|...++...++.+..|+.. +.... ........+..+++.+++..+++...++.+..||
T Consensus         9 ~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A            9 NLTNQDTGPYGITVS---DKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT   84 (299)
T ss_dssp             ECCSSSCCEEEEEEC---TTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             cCCCcCCCccceEEC---CCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence            344455678899998   788887776667889999877 54322 2223456788899999999887776677777664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.21  E-value=0.008  Score=33.43  Aligned_cols=64  Identities=9%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCC----CCEEEEECCCCCEEEEec--CCCCeEEEEEECCCCCeEEEec
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKD----GKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDASKAASGA   79 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~   79 (88)
                      .+...+..+.++   ++++.+++...+    +.+.+|+...+.....+.  .....+..+.+++++..+++..
T Consensus        84 ~~~~~~~~i~~~---~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  153 (333)
T 2dg1_A           84 SHKANPAAIKIH---KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDF  153 (333)
T ss_dssp             CSSSSEEEEEEC---TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCcceEEEC---CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEec
Confidence            445678899999   788887777665    578888887655432222  2345688899999998877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.17  E-value=0.00078  Score=41.83  Aligned_cols=62  Identities=13%  Similarity=-0.012  Sum_probs=41.3

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCC-C----CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444          16 RPVVHLAFSDITESGYFLISACKD-G----KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ..+..++|+   ++|+.++.+..+ |    .+.+|++.++..+.... ....+..++|+|+ ..++.++.+.
T Consensus       163 ~~~~~~~~S---PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          163 TALDAWAAS---DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             EEEEEEEEC---TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCC
T ss_pred             EEEEeEEEC---CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecC
Confidence            357788999   799988766543 3    48899998887643311 1111246789999 8887665443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.14  E-value=0.0012  Score=37.86  Aligned_cols=58  Identities=17%  Similarity=0.072  Sum_probs=39.7

Q ss_pred             CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ++..++.++.++.+..||..+++.+..+..  +.+....+..++..++.++.|+.+..||
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d   65 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG   65 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence            467888899999999999999987766665  3333333445666777778899998886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.07  E-value=0.014  Score=33.73  Aligned_cols=64  Identities=9%  Similarity=-0.039  Sum_probs=45.7

Q ss_pred             EEEEecCCCCcEEEEEeC----------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEec-CCCeEEEcC
Q psy6444          21 LAFSDITESGYFLISACK----------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGA-ADFQAKALK   88 (88)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-~d~~i~~~~   88 (88)
                      +.++   +++..++....          ++.+.+.|..+.+.+..+... .....+.|+++++ .+.++. .++.+.++|
T Consensus       272 ~~~s---~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          272 VAYL---KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             EEEC---CCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            5566   57766665443          246888899888877777532 3578899999999 666665 578888875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.97  E-value=0.013  Score=32.90  Aligned_cols=66  Identities=11%  Similarity=0.027  Sum_probs=48.0

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...+.+.    .+..+++...++.+.++|..+++.+..+.. ......+++++++..+++...++.+.+||
T Consensus        46 ~~~i~~~----~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD  111 (328)
T 3dsm_A           46 AQSMVIR----DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIIN  111 (328)
T ss_dssp             EEEEEEE----TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEE
T ss_pred             ceEEEEE----CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEE
Confidence            4556654    456666666678899999998888777753 35678888888886665655788888775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.93  E-value=0.016  Score=32.02  Aligned_cols=61  Identities=13%  Similarity=0.097  Sum_probs=46.5

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC-CCCCeE-EEec
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN-KDASKA-ASGA   79 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~~~   79 (88)
                      +....+++.   ++|+..++....+.|..|+..+++.+..+......+.+++|. |++..+ ++..
T Consensus       199 ~~p~g~~~d---~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          199 QIPDGMCID---AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEEEB---TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCeeEEC---CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            345667787   788888877777889999988788888887777788999998 776644 4443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.93  E-value=0.017  Score=32.23  Aligned_cols=63  Identities=11%  Similarity=0.063  Sum_probs=42.5

Q ss_pred             cCCCCCEEE-EEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444          12 SGHTRPVVH-LAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus        12 ~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++...+.. +.|+    ++ .++++..++...+| +.++.. ..+..+...+..++|++  ..+++.+.+..
T Consensus       259 ~~~~~~~~~~~~~s----dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          259 DEVDRGVGQAKIKD----GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             TTCCSEEEEEEEET----TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred             ccCCcccCCccEEc----Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence            344556665 7774    56 88888889999999 765554 33444477888999998  55555554443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.90  E-value=0.017  Score=31.73  Aligned_cols=72  Identities=15%  Similarity=0.112  Sum_probs=47.6

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEE-------EeCCCCEEEEECCCCCEEEEec----CCCCeEEEEEECCC-CCeEEEec
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLIS-------ACKDGKPMLRQGDTGDWIGTFE----GHKGCVWGVDINKD-ASKAASGA   79 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~~~~~~   79 (88)
                      .........++|+   +++..+++       ...++.+..|+..++.......    ++...+..+.++++ +.++++..
T Consensus        14 ~~~~~~~~~~~~~---~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~   90 (314)
T 1pjx_A           14 TEDIPGAEGPVFD---KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             ECCCTTCEEEEEC---TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred             hccCCCccCceEC---CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC
Confidence            4444556788998   78888777       5667889999877666432211    24456888999998 77666544


Q ss_pred             CCCeEEEc
Q psy6444          80 ADFQAKAL   87 (88)
Q Consensus        80 ~d~~i~~~   87 (88)
                      .+ .+.+|
T Consensus        91 ~~-~l~~~   97 (314)
T 1pjx_A           91 RL-GLLVV   97 (314)
T ss_dssp             TT-EEEEE
T ss_pred             CC-CEEEE
Confidence            33 45544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.76  E-value=0.026  Score=31.77  Aligned_cols=67  Identities=6%  Similarity=-0.093  Sum_probs=46.0

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-E-ecCCCCeEEEEEECC-CCCeEEEe----cCCCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-T-FEGHKGCVWGVDINK-DASKAASG----AADFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~-~~~~~~~~----~~d~~i~~~~   88 (88)
                      ....++++   ++++.++....  .+..+|..++.... . +.........++++| ++..+++.    ..++.+.+||
T Consensus       226 ~p~~la~~---~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          226 WPSEVQLN---GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             CCEEEEEC---TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             CceeEEEe---cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence            46778888   78888877654  78889987665421 1 111235678899998 56666665    5677888875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.75  E-value=0.019  Score=35.81  Aligned_cols=66  Identities=11%  Similarity=-0.026  Sum_probs=41.9

Q ss_pred             EEEEEEecCCCCcEEEEEeCCCC--------------EEEEECCCCC----EEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444          19 VHLAFSDITESGYFLISACKDGK--------------PMLRQGDTGD----WIGTFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      ..++|+   ++ +.++.+..+..              +.+|++.++.    .+.....+...+..+.|+|++++++..+.
T Consensus       212 ~~~~ws---pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~  287 (741)
T 1yr2_A          212 SGLAWL---GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSS  287 (741)
T ss_dssp             CCCEES---TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             ccEEEE---CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence            356788   68 77777766543              7788876554    22222223345788899999998875543


Q ss_pred             C-----CeEEEcC
Q psy6444          81 D-----FQAKALK   88 (88)
Q Consensus        81 d-----~~i~~~~   88 (88)
                      +     ..+.+||
T Consensus       288 ~~~~~~~~l~~~d  300 (741)
T 1yr2_A          288 EGTDPVNTVHVAR  300 (741)
T ss_dssp             CTTCSCCEEEEEE
T ss_pred             ccCCCcceEEEEE
Confidence            3     3566654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.74  E-value=0.0048  Score=36.46  Aligned_cols=80  Identities=16%  Similarity=0.038  Sum_probs=52.5

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCC-------CCeEEEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGH-------KGCVWGV   66 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~   66 (88)
                      +.+.+.++.....+  .+.++   ++++.++.+.          .++.+.++|..+.+.+..+...       ......+
T Consensus       108 t~~vv~~I~vG~~P--gia~S---pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~  182 (426)
T 3c75_H          108 TGRILGMTDGGFLP--HPVAA---EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMN  182 (426)
T ss_dssp             TTEEEEEEEECSSC--EEEEC---TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGS
T ss_pred             CCEEEEEEECCCCC--ceEEC---CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceE
Confidence            34444455444445  68889   7898777665          3567999999888877666421       1223457


Q ss_pred             EECCCCCeEEEecC--CCeEEEcC
Q psy6444          67 DINKDASKAASGAA--DFQAKALK   88 (88)
Q Consensus        67 ~~~~~~~~~~~~~~--d~~i~~~~   88 (88)
                      .++|+++++..+..  ++.+.+.|
T Consensus       183 ~~spDGk~lyV~n~~~~~~VsVID  206 (426)
T 3c75_H          183 ALTPDNKNLLFYQFSPAPAVGVVD  206 (426)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEE
T ss_pred             EEcCCCCEEEEEecCCCCeEEEEE
Confidence            88999998876653  46676654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.68  E-value=0.0036  Score=38.75  Aligned_cols=62  Identities=16%  Similarity=0.109  Sum_probs=40.4

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeC-C----CCEEEEECCCCCEEEE-ecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACK-D----GKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      +...+..++|+   ++|+.++.+.. .    ..+.++|+.++..+.. +...  ....++|+ |++.++.++.+
T Consensus       127 ~~~~l~~~~~S---pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          127 GTTALDQLSFS---RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             SCCEEEEEEEC---TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESS
T ss_pred             CcEEEEEEEEC---CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEec
Confidence            44567788999   79987774332 2    4588999998875432 1111  12456899 99988766555

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.57  E-value=0.031  Score=30.34  Aligned_cols=70  Identities=11%  Similarity=0.043  Sum_probs=48.7

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE-EEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW-IGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...+..+.++   +++...++...++.+..|+.. +.. ..........+..+.+.+++..+++...++.+..||
T Consensus        56 ~~~~~~i~~~---~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  126 (299)
T 2z2n_A           56 DAKVMCLTIS---SDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRIT  126 (299)
T ss_dssp             TCCEEEEEEC---TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             cCceeeEEEC---CCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEEC
Confidence            4567788888   788877777667778888875 332 122222445778899999998887776677777664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.53  E-value=0.045  Score=31.95  Aligned_cols=67  Identities=13%  Similarity=-0.037  Sum_probs=45.1

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC--eEEEc
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF--QAKAL   87 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~--~i~~~   87 (88)
                      .....++++   ++++.+++...++.|..|+...+........ ..... ++|++++..++.+..++  .+.++
T Consensus       131 ~~P~~la~d---~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~  199 (409)
T 3hrp_A          131 KYMWGIAAV---GNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVY  199 (409)
T ss_dssp             CCEEEEEEC---STTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEE
T ss_pred             CCceEEEEe---CCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEE
Confidence            356788898   7888777777778899999876554333333 22233 88999998777666544  45443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.44  E-value=0.034  Score=32.25  Aligned_cols=64  Identities=6%  Similarity=-0.065  Sum_probs=45.1

Q ss_pred             EEEEecCCCCcEEEEEeC-C--------CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCe-EEEec-CCCeEEEcC
Q psy6444          21 LAFSDITESGYFLISACK-D--------GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASK-AASGA-ADFQAKALK   88 (88)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-~d~~i~~~~   88 (88)
                      +.++   +++..++.+.. .        ..+.++|..+.+.+..+... .....+.+++++.. +.+.. .++.+.++|
T Consensus       269 v~~s---~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          269 VAKL---KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             EEEE---TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eEEc---CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            5678   68776665432 2        24569999988877777643 25788999999984 45555 588888875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.44  E-value=0.02  Score=33.55  Aligned_cols=59  Identities=14%  Similarity=0.090  Sum_probs=43.3

Q ss_pred             CCCcEEEEEeC-----CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec----------CCCeEEEcC
Q psy6444          28 ESGYFLISACK-----DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA----------ADFQAKALK   88 (88)
Q Consensus        28 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~d~~i~~~~   88 (88)
                      +++..++....     ++.+.+.|..+.+.+..+......  .+.++|++..+..+.          .++.+.+||
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            67877777655     467889999888888777654443  389999999776543          356688776

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.35  E-value=0.022  Score=33.70  Aligned_cols=64  Identities=11%  Similarity=0.078  Sum_probs=46.5

Q ss_pred             EEEEecCCCCcEEEEEeC----------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEec-CCCeEEEcC
Q psy6444          21 LAFSDITESGYFLISACK----------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGA-ADFQAKALK   88 (88)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-~d~~i~~~~   88 (88)
                      +.++   +++..++....          ++.+.+.|..+.+.+..+... ...+.+.|+++++ .+.+.. .++.+.++|
T Consensus       324 va~s---~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          324 TAYH---RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             EEEE---GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eEEc---CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence            5677   57766665432          246889999988888777642 3578899999998 777666 588888875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.15  E-value=0.06  Score=29.20  Aligned_cols=71  Identities=11%  Similarity=-0.032  Sum_probs=50.7

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-EecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .......+.+.   ++|...++...++.+..++.. +.... ........+..+.+.+++..+++...++.+..+|
T Consensus        18 ~~~~p~~i~~d---~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           18 PDSGPYGITSS---EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS   89 (300)
T ss_dssp             TTCCEEEEEEC---TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCCCcceeeEC---CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence            44567888888   788888877677889999876 54332 2223346788899999998887766667777664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.91  E-value=0.087  Score=29.07  Aligned_cols=71  Identities=14%  Similarity=-0.012  Sum_probs=47.2

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      +.....-...+.|+|  .++..+++...++.+..|+...+.. ..+. ....+.++.+++++.++++.  +..+.+|
T Consensus         8 ~~~~~~~~Egp~w~~--~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~   78 (297)
T 3g4e_A            8 LPENCRCGESPVWEE--VSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCAL   78 (297)
T ss_dssp             ECCCCSBEEEEEEET--TTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEE
T ss_pred             eccCCccccCCeEEC--CCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEE
Confidence            334445567889994  3556777777778899999876654 2232 34578889999999966653  3445544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=95.87  E-value=0.12  Score=30.22  Aligned_cols=67  Identities=13%  Similarity=0.039  Sum_probs=49.2

Q ss_pred             CEEEEEEEecCCCCcEEEEEe-CCCCEEEEECCCCCEEEEecCC---------------CCeEEEEEECCCCCeEEEecC
Q psy6444          17 PVVHLAFSDITESGYFLISAC-KDGKPMLRQGDTGDWIGTFEGH---------------KGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      ....++++   ++|+.+++-. .++.|..|+..++. +..+.++               ......+++++++.++++-..
T Consensus       324 ~P~gia~d---~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~  399 (409)
T 3hrp_A          324 QPNGMTVD---EDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW  399 (409)
T ss_dssp             SEEEEEEC---TTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred             CCeEEEEe---CCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence            36678888   7898777777 77889999976565 3333332               245788999999888888778


Q ss_pred             CCeEEEc
Q psy6444          81 DFQAKAL   87 (88)
Q Consensus        81 d~~i~~~   87 (88)
                      ++.|+.+
T Consensus       400 n~~Ir~i  406 (409)
T 3hrp_A          400 GKAIRKY  406 (409)
T ss_dssp             TCEEEEE
T ss_pred             CCeEEEE
Confidence            8888754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.78  E-value=0.094  Score=28.42  Aligned_cols=70  Identities=10%  Similarity=-0.009  Sum_probs=47.7

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEE-ecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGT-FEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...+..+.+.   +++...++....+.+..++. .+..... .......+..+.+.+++..+++...++.|..+|
T Consensus       187 ~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          187 AAAPVGITSG---NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             TCCEEEEEEC---TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             CCCcceEEEC---CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            3456778888   67877776666667888887 4443322 233456678899999998777766667776654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.47  E-value=0.15  Score=28.76  Aligned_cols=72  Identities=7%  Similarity=-0.099  Sum_probs=46.3

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeC-----CCCEEEEECCCCCEEEEecCC------CCeEEEEEECCC-CCeEEEec--
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACK-----DGKPMLRQGDTGDWIGTFEGH------KGCVWGVDINKD-ASKAASGA--   79 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~~~~~~--   79 (88)
                      +...+..++++   ++++.++.-..     +..+..||..+++.+..+...      ......++++++ +..+++-.  
T Consensus        65 ~~~~p~gv~~d---~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           65 TFDTVLGIKSD---GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCSCEEEEEEC---SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             ceeEeeEEEEc---CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence            45678899998   67876554432     467889998877765555321      234577888875 44455544  


Q ss_pred             -CCCeEEEcC
Q psy6444          80 -ADFQAKALK   88 (88)
Q Consensus        80 -~d~~i~~~~   88 (88)
                       .++.+.+||
T Consensus       142 ~~~~~i~v~d  151 (343)
T 2qe8_A          142 DDKAALIRVD  151 (343)
T ss_dssp             GGGCEEEEEE
T ss_pred             CCCCeEEEEE
Confidence             556666654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.28  E-value=0.1  Score=29.45  Aligned_cols=59  Identities=2%  Similarity=-0.094  Sum_probs=41.4

Q ss_pred             EEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEEEecC
Q psy6444          19 VHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      ..++++   ++|..+++...++.|..|+..++........ .......+++.+++.++++.+.
T Consensus       251 dgia~d---~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          251 DGISID---KDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             SCEEEC---TTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             ceEEEC---CCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence            346777   7888888888888999999844543222221 2456788999999888777653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.81  E-value=0.25  Score=27.69  Aligned_cols=69  Identities=17%  Similarity=0.022  Sum_probs=44.1

Q ss_pred             CEEEEEEEecCCCCcEEEE-EeCCCCEEEEECC--CC-C-----EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          17 PVVHLAFSDITESGYFLIS-ACKDGKPMLRQGD--TG-D-----WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ....++|+   ++++.++. ...++.|.+|+..  ++ .     ....+.........+.+.+++.++++...++.|..|
T Consensus       180 ~~~~i~~s---~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~  256 (326)
T 2ghs_A          180 IPNSICFS---PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY  256 (326)
T ss_dssp             SEEEEEEC---TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             ccCCeEEc---CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence            34567888   78876554 4456778899875  44 2     122233334566788899999877766555667766


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       257 d  257 (326)
T 2ghs_A          257 D  257 (326)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=94.58  E-value=0.17  Score=31.47  Aligned_cols=66  Identities=12%  Similarity=-0.108  Sum_probs=45.8

Q ss_pred             EEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCC------------EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444          19 VHLAFSDITESGYFLISACK-DGKPMLRQGDTGD------------WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ..+.++   ++|++++.++. +..+.++++.+..            ...... -....++++|+++|..+.+.-.|+.+.
T Consensus       280 hGv~~s---PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~  355 (595)
T 1fwx_A          280 HGCNMA---PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVV  355 (595)
T ss_dssp             CCEEEC---TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred             eEEEEc---CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEE
Confidence            457788   79987776554 5679999987432            222222 335678899999995555667888888


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +||
T Consensus       356 kwd  358 (595)
T 1fwx_A          356 KWN  358 (595)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.47  E-value=0.26  Score=27.26  Aligned_cols=65  Identities=9%  Similarity=0.043  Sum_probs=37.0

Q ss_pred             EEEEEEEecCCCCcEEEE----EeC-------------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444          18 VVHLAFSDITESGYFLIS----ACK-------------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      +..+.++   ++|...++    +..             .+.+..++..++..... . .......++|+|++..+..+..
T Consensus       133 ~~~i~~d---~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-~-~~~~p~gl~~spdg~~lyv~~~  207 (305)
T 3dr2_A          133 PNDLIVA---RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-A-DLDHPNGLAFSPDEQTLYVSQT  207 (305)
T ss_dssp             CCCEEEC---TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-E-EESSEEEEEECTTSSEEEEEEC
T ss_pred             CCCEEEC---CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-e-cCCCCcceEEcCCCCEEEEEec
Confidence            3457777   68887775    221             13355555544443222 2 3345678899999986654433


Q ss_pred             C------CeEEEc
Q psy6444          81 D------FQAKAL   87 (88)
Q Consensus        81 d------~~i~~~   87 (88)
                      .      +.|.+|
T Consensus       208 ~~~~~~~~~i~~~  220 (305)
T 3dr2_A          208 PEQGHGSVEITAF  220 (305)
T ss_dssp             CC---CCCEEEEE
T ss_pred             CCcCCCCCEEEEE
Confidence            3      566655

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.31  E-value=0.35  Score=27.14  Aligned_cols=57  Identities=14%  Similarity=0.028  Sum_probs=41.4

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC-CCCCeEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN-KDASKAA   76 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   76 (88)
                      .....+.+.   ++|...++...++.+..|+. .+..+..+......+.+++|. +++..++
T Consensus       230 ~~p~gi~~d---~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          230 GGMDGSVCD---AEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL  287 (326)
T ss_dssp             SEEEEEEEC---TTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             CCCCeeEEC---CCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence            345567777   78887777666677888887 567667776666678999998 7776554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=93.34  E-value=0.013  Score=33.64  Aligned_cols=55  Identities=13%  Similarity=0.016  Sum_probs=23.8

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..++.++.++.+..||..+++.+..+..+.    ...++|++..++.++.++.+..||
T Consensus        92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             ---CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence            4456667777889999988887665554432    123455667777777788888775

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.29  E-value=0.77  Score=27.71  Aligned_cols=71  Identities=7%  Similarity=-0.021  Sum_probs=49.0

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EE--------EEecCCCCeEEEEEECCCCCeEEE--ecCCC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WI--------GTFEGHKGCVWGVDINKDASKAAS--GAADF   82 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~i~~~~~~~~~~~~~~--~~~d~   82 (88)
                      ..+|..+.|+|....+..++.-..|+.|++||+....  ..        .........+.+++|..++-.+..  ...+|
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~G  203 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGG  203 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCC
Confidence            4679999999866667799999999999999997522  11        111222356778888887665544  44666


Q ss_pred             eEE
Q psy6444          83 QAK   85 (88)
Q Consensus        83 ~i~   85 (88)
                      .|.
T Consensus       204 DIY  206 (452)
T 3pbp_A          204 DIF  206 (452)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=92.65  E-value=0.53  Score=29.55  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=36.4

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE-EEEEECCCCCeEEE
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV-WGVDINKDASKAAS   77 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~   77 (88)
                      ..+..++.++.|+.++.||..+++.+..+....+.. .-+.+..+|.+++.
T Consensus       484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            467788999999999999999999887776432211 23455667776654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=92.14  E-value=1.1  Score=26.49  Aligned_cols=66  Identities=8%  Similarity=0.022  Sum_probs=40.7

Q ss_pred             EEEEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444          19 VHLAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDAS-KAASGAADFQAKAL   87 (88)
Q Consensus        19 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~   87 (88)
                      ..++++   + ++..+++-..++.|..++...+....... ........++++|++. .+++-...+.|..+
T Consensus       229 ~giavd---p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          229 NGAETH---PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             CCEEEC---TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEe---CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence            345667   5 67766666666778888876444312221 1224467899999998 45555566666654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.60  E-value=0.95  Score=27.35  Aligned_cols=68  Identities=16%  Similarity=0.025  Sum_probs=47.2

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC------------EEEEecC------CCCeEEEEEECCC---CCeE
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD------------WIGTFEG------HKGCVWGVDINKD---ASKA   75 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~------~~~~i~~~~~~~~---~~~~   75 (88)
                      .+..+..+   ++|.+++..+.. .+.+..++.+.            ..+.+.-      ....|..+.|+|-   +..+
T Consensus        67 ~i~qlvlS---psG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L  142 (452)
T 3pbp_A           67 DTFHVISS---TSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI  142 (452)
T ss_dssp             TTCEEEEC---TTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred             ceeEEEEC---CCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence            45667888   799999887654 67777776322            1112221      2467999999995   4477


Q ss_pred             EEecCCCeEEEcC
Q psy6444          76 ASGAADFQAKALK   88 (88)
Q Consensus        76 ~~~~~d~~i~~~~   88 (88)
                      +.-..|+.||+||
T Consensus       143 VVLtsD~~Ir~yD  155 (452)
T 3pbp_A          143 VVLKEDDTITMFD  155 (452)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEEecCCEEEEEE
Confidence            7888999999996

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=91.22  E-value=1.6  Score=26.52  Aligned_cols=57  Identities=5%  Similarity=-0.063  Sum_probs=40.3

Q ss_pred             EEEEEecCCCCcEEEEEe-------------------CCCCEEEEECCCCCEEEEecCC-C-CeEEEEEE--CCCCCeEE
Q psy6444          20 HLAFSDITESGYFLISAC-------------------KDGKPMLRQGDTGDWIGTFEGH-K-GCVWGVDI--NKDASKAA   76 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~~--~~~~~~~~   76 (88)
                      .+.|+   ++++.+++..                   ....|.+|+..+++.+..+... . .....++|  +|++.+..
T Consensus       192 d~~~~---p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aY  268 (462)
T 2ece_A          192 DFWWN---LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGF  268 (462)
T ss_dssp             CEEEE---TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEE
T ss_pred             eEEEC---CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEE
Confidence            46678   7888888874                   3568999999887777766552 2 34456666  99988776


Q ss_pred             Eec
Q psy6444          77 SGA   79 (88)
Q Consensus        77 ~~~   79 (88)
                      .++
T Consensus       269 V~~  271 (462)
T 2ece_A          269 INM  271 (462)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.19  E-value=1.2  Score=25.02  Aligned_cols=56  Identities=11%  Similarity=-0.038  Sum_probs=36.3

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...+.....++.+.++|..+.+.+..+.... .-+.++  +++..++.+..+..+.++|
T Consensus       106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iD  161 (268)
T 3nok_A          106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHE  161 (268)
T ss_dssp             SCEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEEC
T ss_pred             CEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEc
Confidence            4555556667889999999888887776532 223333  3566665555577777765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=91.17  E-value=1  Score=24.30  Aligned_cols=67  Identities=9%  Similarity=-0.002  Sum_probs=39.4

Q ss_pred             EEEEEEEecCCCC-cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEEc
Q psy6444          18 VVHLAFSDITESG-YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKAL   87 (88)
Q Consensus        18 v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~~   87 (88)
                      ...++++   +++ ..+++-..++.|..++...................+++.+++. .+++-...+.|.++
T Consensus        38 ~~gi~~d---~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~  106 (267)
T 1npe_A           38 IIGLAFD---CVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (267)
T ss_dssp             EEEEEEE---TTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEEEe---cCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEE
Confidence            4577888   544 4555555567888888764433222322334667888888644 44454555566543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=91.03  E-value=1.2  Score=24.69  Aligned_cols=73  Identities=18%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLI-SACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      .+.+-...+..++|+   ++++.++ ....++.+...+.. ++.+..+.- -..-.-.+++.+++.++++.-.++.+.+
T Consensus        21 ~l~g~~~~lSGla~~---~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           21 EIAGITNNISSLTWS---AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             ECTTCCSCEEEEEEE---TTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred             ECCCcccCcceeEEe---CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence            456666789999999   5665555 46666677777876 776666632 2244566777777776666545555544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=90.76  E-value=1.2  Score=24.58  Aligned_cols=68  Identities=12%  Similarity=0.050  Sum_probs=46.4

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC---------CCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH---------KGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ..+..++++|  ..+.+++....++.+..+|.. +..+..+.-.         ..+.-.+++.++|..+++ ++...+..
T Consensus       173 ~d~S~l~~dp--~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~  248 (255)
T 3qqz_A          173 DDVSGAEFNQ--QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR  248 (255)
T ss_dssp             SCCCEEEEET--TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred             CCceeEEEcC--CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence            3567889997  667777777777778888865 5544444322         236688999999997776 55555554


Q ss_pred             c
Q psy6444          87 L   87 (88)
Q Consensus        87 ~   87 (88)
                      +
T Consensus       249 f  249 (255)
T 3qqz_A          249 F  249 (255)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=89.22  E-value=2.8  Score=26.27  Aligned_cols=61  Identities=13%  Similarity=0.112  Sum_probs=35.1

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEE-eCCC--CEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeEE
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISA-CKDG--KPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKAA   76 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~   76 (88)
                      .+..|...+.  .|+   ++++.++.. ..++  .+.+|+.. +.....+.. ..+.+..+.+++++..++
T Consensus       322 ~l~~~~~~~~--~~s---~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~  386 (693)
T 3iuj_A          322 DLIPERQQVL--TVH---SGSGYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALY  386 (693)
T ss_dssp             EEECCCSSCE--EEE---EETTEEEEEEEETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEE
T ss_pred             EEecCCCCEE--EEE---EECCEEEEEEEECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEE
Confidence            4455555554  777   467665544 4454  46777776 444444432 335566667777776554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=88.93  E-value=1.9  Score=24.02  Aligned_cols=56  Identities=11%  Similarity=0.056  Sum_probs=34.8

Q ss_pred             cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          31 YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ...+....++.+.++|..+.+.+..+......-+.  +++++..++.+..++.+.++|
T Consensus        77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD  132 (266)
T 2iwa_A           77 KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEID  132 (266)
T ss_dssp             EEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEEC
T ss_pred             EEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEE
Confidence            44455556778999999888877777532111133  344666555555677787765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=88.68  E-value=0.95  Score=28.41  Aligned_cols=48  Identities=15%  Similarity=0.022  Sum_probs=29.5

Q ss_pred             CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          40 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +.+.-||..+++.+-..... .......+...+..++.++.|+.+++||
T Consensus       457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            56777888877765444322 1222223444566677778889888875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=88.66  E-value=2.1  Score=24.06  Aligned_cols=64  Identities=13%  Similarity=0.015  Sum_probs=41.1

Q ss_pred             EEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeE--EEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          18 VVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCV--WGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..-+.|+    ++.++.+.+.++.+..+|..+++.+... -. ...  -.+.+..+ ..+.....++.+.++|
T Consensus        57 tqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           57 TQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEE
T ss_pred             cceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEE
Confidence            4677776    4678888888888999999988876665 22 222  22444432 3333455667777664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=88.64  E-value=2.3  Score=24.65  Aligned_cols=69  Identities=6%  Similarity=-0.021  Sum_probs=35.0

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCeEEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAKA   86 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~i~~   86 (88)
                      .....++|++  .++..+.+-...+.|..++...+...............+++.+. +.++++-...+.|.+
T Consensus       116 ~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~  185 (386)
T 3v65_B          116 ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV  185 (386)
T ss_dssp             SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred             CccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence            4466788883  34445555555667777777644432222222223344566553 344445444445544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=88.27  E-value=2.2  Score=23.82  Aligned_cols=59  Identities=8%  Similarity=-0.160  Sum_probs=36.8

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCC-----CeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHK-----GCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ++|+.++.+..++.+.+.|..+.+.+..+....     ...+.+.+. ++..++....+..|.+.
T Consensus       114 ~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          114 TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence            466655555556788888988777666665322     135566776 66666665555666543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=88.13  E-value=2.7  Score=26.73  Aligned_cols=55  Identities=11%  Similarity=-0.065  Sum_probs=33.2

Q ss_pred             EEEEEecCCCCcEEEEEeCCC-----CEEEEECCCCC--EEEEec-CCCCeEEEEEECCCCCeEEE
Q psy6444          20 HLAFSDITESGYFLISACKDG-----KPMLRQGDTGD--WIGTFE-GHKGCVWGVDINKDASKAAS   77 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~   77 (88)
                      .+.|+   ++++.++....+.     .|..+++.++.  ....+. ........+.|+|++++++-
T Consensus       225 ~~~Ws---pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~  287 (751)
T 2xe4_A          225 EIVWG---PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI  287 (751)
T ss_dssp             CCEEC---SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE
T ss_pred             eEEEe---cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE
Confidence            46788   7887776665542     35566765542  112222 22234567889999998764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=88.01  E-value=2.9  Score=25.44  Aligned_cols=51  Identities=18%  Similarity=0.167  Sum_probs=35.2

Q ss_pred             CCCcEEEEEeCC------CCEEEEECCCCCEEEEecCCCC---eEEEEEECCCCCeEEEec
Q psy6444          28 ESGYFLISACKD------GKPMLRQGDTGDWIGTFEGHKG---CVWGVDINKDASKAASGA   79 (88)
Q Consensus        28 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~   79 (88)
                      ++| .++++..+      +.+.+.|..+.+.+..+.....   .-..+.|+|+++.++++.
T Consensus       147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~  206 (462)
T 2ece_A          147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE  206 (462)
T ss_dssp             SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred             CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence            677 77766555      6788999888888777763211   123467799999888774

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=87.62  E-value=2.6  Score=24.07  Aligned_cols=69  Identities=6%  Similarity=-0.021  Sum_probs=34.3

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCC-CCeEEEecCCCeEEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKD-ASKAASGAADFQAKA   86 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~i~~   86 (88)
                      .....++|++  .++..+.+-...+.|..++...+...............+++.+. +..+++-...+.|.+
T Consensus        73 ~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~  142 (349)
T 3v64_C           73 ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV  142 (349)
T ss_dssp             SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEEec--cccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEE
Confidence            3456788883  34444445455667777777644322222222233345566553 444445444444443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=87.49  E-value=1.6  Score=27.52  Aligned_cols=48  Identities=15%  Similarity=-0.025  Sum_probs=30.7

Q ss_pred             CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          40 GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +.+.-||..+++.+-....+.. .....+...+.+++.++.|+.++.||
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             eeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEE
Confidence            5577888888876655543321 11223344566777788999999886

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=87.30  E-value=3.5  Score=25.22  Aligned_cols=66  Identities=8%  Similarity=0.007  Sum_probs=39.5

Q ss_pred             EEEEEecCCCCcEEEEEeCCCCEEEEECC-------CCCE-----------EEE-e-cCCCCeEEEEEECCCCC-eEEEe
Q psy6444          20 HLAFSDITESGYFLISACKDGKPMLRQGD-------TGDW-----------IGT-F-EGHKGCVWGVDINKDAS-KAASG   78 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----------~~~-~-~~~~~~i~~~~~~~~~~-~~~~~   78 (88)
                      .++.+|  .++.++++-..++.+..++..       ++..           ... + .........++++|++. .+++-
T Consensus       251 giavdp--~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          251 GATIHP--INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CEEECT--TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             EEEEcC--CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            345663  355666667677778888875       3332           111 1 12234457899999998 45555


Q ss_pred             cCCCeEEEc
Q psy6444          79 AADFQAKAL   87 (88)
Q Consensus        79 ~~d~~i~~~   87 (88)
                      ...+.|+.+
T Consensus       329 ~~~h~I~ki  337 (496)
T 3kya_A          329 INNHYFMRS  337 (496)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCEEEEE
Confidence            566666653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=86.93  E-value=2.7  Score=23.49  Aligned_cols=55  Identities=11%  Similarity=0.076  Sum_probs=34.0

Q ss_pred             cEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          31 YFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ........++.+.++|..+.+.+..+.... .-+.++  +++..++.+..+..+.++|
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iD  152 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLD  152 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEEC
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEc
Confidence            444455567789999999888888776532 112333  3555555544466677665

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=85.92  E-value=3  Score=26.24  Aligned_cols=50  Identities=16%  Similarity=0.168  Sum_probs=34.7

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCC-eEEEEEECCCCCeEEE
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKG-CVWGVDINKDASKAAS   77 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~   77 (88)
                      ..+..++.++.++.+..||..+++.+..+....+ ...-+.+..++.+++.
T Consensus       486 ~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            4667888889999999999999998887764321 1123445567765543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=85.05  E-value=3.3  Score=22.73  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=23.7

Q ss_pred             CCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEE
Q psy6444          29 SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAAS   77 (88)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   77 (88)
                      ++. +..+..++.+..++.. +.....+......+..+...+++..++.
T Consensus       147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~  193 (330)
T 3hxj_A          147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG  193 (330)
T ss_dssp             TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE
T ss_pred             CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE
Confidence            444 4445555667777766 5544444333333344444455554443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=84.92  E-value=4.4  Score=24.04  Aligned_cols=63  Identities=10%  Similarity=-0.030  Sum_probs=36.9

Q ss_pred             EEEEecCC-CCcEEEEEeCCCCEEEEECCCCCEEEEe-c-CCCCeEEEEEECCCCC-eEEEecCCCeEEE
Q psy6444          21 LAFSDITE-SGYFLISACKDGKPMLRQGDTGDWIGTF-E-GHKGCVWGVDINKDAS-KAASGAADFQAKA   86 (88)
Q Consensus        21 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~   86 (88)
                      ++++   + ++..+++-..++.+..++..++.....+ . +.......++++|++. ++++-...+.|+.
T Consensus       233 iavd---~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~  299 (433)
T 4hw6_A          233 CAVH---PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR  299 (433)
T ss_dssp             CEEC---TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEe---CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence            5556   4 6666666555667777777655542222 1 1122334689999998 5555556666665

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.83  E-value=5  Score=26.52  Aligned_cols=37  Identities=16%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF   56 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (88)
                      .+.++...   ++..++++-+.|+.+++|++.++..+...
T Consensus       237 ~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEE---TTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeec---CCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            45666666   67789999999999999999888766543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=83.84  E-value=3.2  Score=23.49  Aligned_cols=57  Identities=11%  Similarity=-0.014  Sum_probs=35.1

Q ss_pred             CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEE-EEECCCCCeEEEecCCCeEEEcC
Q psy6444          30 GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWG-VDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..++.+..++.+..++..+++.+.........+.. ...  .+..+..++.++.+..|+
T Consensus       318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            356777778888999998888876655542222211 111  134555667788887664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=83.32  E-value=4.9  Score=23.36  Aligned_cols=66  Identities=17%  Similarity=0.157  Sum_probs=42.3

Q ss_pred             EEEEEEEecCCCCcEEEEEeCC-CCEEEEECCCCCEEEEec--C----CCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          18 VVHLAFSDITESGYFLISACKD-GKPMLRQGDTGDWIGTFE--G----HKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ...++..   ++|+..++.+.. +.|...+.. +..+..+.  .    .......+.++|++..++....++.+..+
T Consensus       139 ~nDvavD---~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f  211 (334)
T 2p9w_A          139 VVQSAQD---RDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAF  211 (334)
T ss_dssp             EEEEEEC---TTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred             CceeEEC---CCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence            5677788   789998888777 666655554 33222221  1    11224588999999888766557776654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.13  E-value=3.3  Score=22.87  Aligned_cols=64  Identities=13%  Similarity=-0.126  Sum_probs=35.8

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE-----EEecC--CCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI-----GTFEG--HKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      .+.+++|+   |+|.+.+.  .++.+.-.+..+....     ....+  --....++-|.+++.++++  .|+.|.-+
T Consensus        42 ~~~~laf~---P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLS---PGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TCSEEEEC---TTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred             cceeEEEC---CCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence            56689999   78875555  5665544444331110     01110  0111356778999998887  55777543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=82.96  E-value=4.3  Score=22.46  Aligned_cols=58  Identities=17%  Similarity=0.174  Sum_probs=40.1

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      .....++|+   +++..+++-..++.|..++... .....+. .......+++.+++.++++.
T Consensus        32 ~~pegia~~---~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad   89 (306)
T 2p4o_A           32 TFLENLASA---PDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATG   89 (306)
T ss_dssp             CCEEEEEEC---TTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEE
T ss_pred             CCcceEEEC---CCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEe
Confidence            456788898   7888777766778888888653 3333222 23567889999998876654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=81.86  E-value=3.6  Score=26.16  Aligned_cols=60  Identities=10%  Similarity=0.028  Sum_probs=35.6

Q ss_pred             CEEEEEEEecCCCCcEEEEEeC-CC----CEEEEECCCC-CEEE-EecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444          17 PVVHLAFSDITESGYFLISACK-DG----KPMLRQGDTG-DWIG-TFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      .+...+|+|  ++|+.++.... +|    .+.++++.++ ..+. .+.   .....+.|+|++..++-...+
T Consensus       175 ~~~~~~~S~--PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAP--PEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECT--TTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecC--CCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEEC
Confidence            466778882  48877664433 33    3888898877 5211 111   112356899999877654443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=80.94  E-value=6.3  Score=23.02  Aligned_cols=71  Identities=13%  Similarity=-0.037  Sum_probs=36.1

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCC----CEEEEecCCCCeEEEEEECC-CCCeEEEecCCCeEEEc
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTG----DWIGTFEGHKGCVWGVDINK-DASKAASGAADFQAKAL   87 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~i~~~   87 (88)
                      ...+..++|++  .++..+.+-...+.|..++....    ...............+++.+ .+.++++-...+.|.+.
T Consensus       111 ~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~  186 (400)
T 3p5b_L          111 LRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  186 (400)
T ss_dssp             CSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence            45677888883  33444444445566777776531    12222222334556667665 34455554455555543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=80.75  E-value=5.2  Score=21.93  Aligned_cols=45  Identities=16%  Similarity=0.043  Sum_probs=23.2

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA   76 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   76 (88)
                      .++...+. .  +.+..++ .++............+..+...+++..++
T Consensus       186 ~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v  230 (330)
T 3hxj_A          186 KDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV  230 (330)
T ss_dssp             TTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE
T ss_pred             CCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE
Confidence            34544433 3  5666777 55555544443334455555566655444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=80.75  E-value=8.1  Score=24.11  Aligned_cols=60  Identities=13%  Similarity=0.086  Sum_probs=35.1

Q ss_pred             CCcEEEEEeCCC-----------CEEEEECCCCCEE--EEecC-CCCeEEEEEECCCCCeEEEecC-CCeEEEcC
Q psy6444          29 SGYFLISACKDG-----------KPMLRQGDTGDWI--GTFEG-HKGCVWGVDINKDASKAASGAA-DFQAKALK   88 (88)
Q Consensus        29 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~~~~~~~-d~~i~~~~   88 (88)
                      +++.++.++.+.           .+.+||..++...  ..+.. +.......++..++..++.++. +..+.+||
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd  271 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  271 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence            778888776542           4677888766532  22221 2222334566778888887763 34566654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 1e-08
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 10  TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
           T  GH   V  + F      G F++S   D    +        + T   H+  V  +D +
Sbjct: 242 TLVGHDNWVRGVLFHS---GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298

Query: 70  KDASKAASGAAD 81
           K A    +G+ D
Sbjct: 299 KTAPYVVTGSVD 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 4e-07
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGV 66
            SGH  PV  + F         ++SA +D    +   +TGD+  T +GH   V  +
Sbjct: 12 ALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 6e-05
 Identities = 16/57 (28%), Positives = 22/57 (38%)

Query: 29  SGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85
            G FL+S  +D    +    TG  + T  GH   V GV  +       S A D   +
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 272

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (108), Expect = 5e-08
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 11  CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK 70
                  +  ++FS   +SG  L++   D    +      D  G   GH   V  + +  
Sbjct: 266 HDNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 71  DASKAASGAAD 81
           D    A+G+ D
Sbjct: 323 DGMAVATGSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 9e-07
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 10  TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
           T  GH   +  + +         L+SA +DGK ++    T + +         V      
Sbjct: 50  TLRGHLAKIYAMHWG---TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 70  KD 71
             
Sbjct: 107 PS 108

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.3 bits (77), Expect = 7e-04
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 30  GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAAD 81
               +S   D    L     G    TF GH+  +  +    + +  A+G+ D
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.2 bits (74), Expect = 0.002
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 10  TCSGHTRPVVHLAFSDITESGYFLISACKDG--KPMLRQGDTGDWIGTFEGHKGCVWGVD 67
           T +GH   +  + F     +G    +   D   +    + D      + +     +  V 
Sbjct: 221 TFTGHESDINAICFF---PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 68  INKDASKAASGAADFQAK 85
            +K      +G  DF   
Sbjct: 278 FSKSGRLLLAGYDDFNCN 295

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 7e-08
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 6  QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWG 65
          + P    GH   V+          G  ++S   D    +    TG  + T  GH G VW 
Sbjct: 7  KSPKVLKGHDDHVITCLQFC----GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 66 VDINKD 71
            +  +
Sbjct: 63 SQMRDN 68

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 4e-07
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
          T  GH   V+     +      ++I+   D    +       ++    GH G VW +   
Sbjct: 7  TLRGHMTSVITCLQFE----DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 70 KDASKAASG 78
                +  
Sbjct: 63 HGGILVSGS 71

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 1e-06
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDIN 69
          S    P+   A++   +    +     + +  + +     W  +   + H G V GVD  
Sbjct: 4  SFLVEPISCHAWN---KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 70 KDASKAASGAADFQAK 85
           D+++  +   D  A 
Sbjct: 61 PDSNRIVTCGTDRNAY 76

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 5e-05
 Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 10  TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI- 68
           T  GH   V+ +A +   ++  +++S  KD   +     +G+ +   +GH+  V  V + 
Sbjct: 303 TYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359

Query: 69  -----NKDASKAASGAADFQAK 85
                  + +  A+G+ D +A+
Sbjct: 360 NGSSLGPEYNVFATGSGDCKAR 381

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.5 bits (72), Expect = 0.003
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 1   MASIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--------- 51
           +  +     + +GH   V  + F+     G  ++S   D    L      +         
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 52  ---WIGTFEGHKGCVWGVDINKDASKAASGAADFQAK 85
                 T+ GHK  V  V   ++     SG+ D    
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 2e-04
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 11  CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINK 70
              H   V+ L F+     G + +S  KD      +   G  I         V   DI+ 
Sbjct: 261 LHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV 316

Query: 71  DASKAASGAADFQAK 85
           D     +G+ D +A 
Sbjct: 317 DDKYIVTGSGDKKAT 331

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-EGHKGCVWGVDI 68
             GH + +  L+ S     G  L SA  +G        TG     F + H   + G+  
Sbjct: 7  VRYGHNKAITALSSS---ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 69 N 69
           
Sbjct: 64 T 64

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (74), Expect = 0.002
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVW 64
          S  ++ V  L +         ++S  +D    +   +T +      GH G V 
Sbjct: 12 SETSKGVYCLQYD-----DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (74), Expect = 0.002
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 12/62 (19%)

Query: 10 TCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN 69
          T SGH + +  L  +        LIS   DG+ M     +       + H   +  +D +
Sbjct: 8  TISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55

Query: 70 KD 71
          K 
Sbjct: 56 KA 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.81
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.79
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.74
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.73
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.7
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.69
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.67
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.67
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.67
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.66
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.64
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.64
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.63
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.63
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.62
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.62
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.62
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.55
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.52
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.5
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.45
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.41
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.39
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.37
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.33
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.29
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.24
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.2
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.19
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.18
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.11
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.04
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.69
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.64
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.55
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.51
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.27
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.24
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.18
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.12
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.82
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.61
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.5
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.45
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.9
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	94.72
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	94.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.46
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.42
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	94.09
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	93.87
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.68
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	93.58
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	92.63
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	89.47
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	88.88
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	88.23

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=4.1e-19  Score=95.78  Aligned_cols=82  Identities=22%  Similarity=0.285  Sum_probs=77.1

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++++.++.+|...+.++.++   ++++.+++++.|+.+++|++.+++.+..+.+|.+.|.+++|+|++.++++++.|++
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         236 TGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             TTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             CCcEEEEEeCCCCCEEEEEEC---CCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence            456788899999999999999   79999999999999999999999989999999999999999999999999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++||
T Consensus       313 i~iWd  317 (317)
T d1vyhc1         313 VKVWE  317 (317)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=2.4e-18  Score=93.92  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=75.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +..++|+||++.|.+++|+   ++++++++++.|+.|++|++.++..+..+..|...|.+++|+|++.++++++.|+.++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s---~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWG---TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEC---TTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             eeeEEECCCCCCEEEEEEC---CCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee
Confidence            4678899999999999999   7999999999999999999999999999999999999999999999999999999998


Q ss_pred             EcC
Q psy6444          86 ALK   88 (88)
Q Consensus        86 ~~~   88 (88)
                      +|+
T Consensus       123 ~~~  125 (340)
T d1tbga_         123 IYN  125 (340)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.3e-17  Score=92.75  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=66.2

Q ss_pred             EecCCCCCEEEEEEEecCCCCcEEEEEeCCCC---EEEEECCCCCEEEEe-------------cCCCCeEEEEEECCCCC
Q psy6444          10 TCSGHTRPVVHLAFSDITESGYFLISACKDGK---PMLRQGDTGDWIGTF-------------EGHKGCVWGVDINKDAS   73 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~   73 (88)
                      .+.+|..+|.+++|+   |+|+.+++++.|+.   +++||+.++..+..+             .+|.+.|.+++|+|+++
T Consensus       226 ~l~~h~~~V~~l~~s---pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~  302 (393)
T d1sq9a_         226 SMINNSNSIRSVKFS---PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE  302 (393)
T ss_dssp             ---CCCCCEEEEEEC---SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred             ccccccceEEEcccc---cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC
Confidence            456789999999999   79999999998874   889999988776665             37999999999999999


Q ss_pred             eEEEecCCCeEEEcC
Q psy6444          74 KAASGAADFQAKALK   88 (88)
Q Consensus        74 ~~~~~~~d~~i~~~~   88 (88)
                      ++++++.|++|++||
T Consensus       303 ~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EEEEEETTSEEEEEE
T ss_pred             eeEEECCCCEEEEEE
Confidence            999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=9.5e-17  Score=86.93  Aligned_cols=80  Identities=21%  Similarity=0.165  Sum_probs=70.9

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      |...+++.||++.|.+++|+   ++++.+++++.|+.+++|++.++..+..+. .|...|.+++|+|++.+ ++++.|+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s---~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSS---ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDH   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTE
T ss_pred             CccceEcCCCCCCcEEEEEC---CCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceee
Confidence            56788999999999999999   799999999999999999999888877774 58899999999999875 45667899


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++|+
T Consensus        78 v~~~~   82 (299)
T d1nr0a2          78 LKVVP   82 (299)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=9.1e-17  Score=87.58  Aligned_cols=74  Identities=22%  Similarity=0.270  Sum_probs=69.2

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..+...+..+.|+   ++++.+++++.|+.+++|++.++..+..+.+|.+.|.+++|+|++.++++++.|+.|++||
T Consensus       267 ~~~~~~i~~~~~s---~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         267 DNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCCSCEEEEEEC---SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccCceEEEEEC---CCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            3456779999999   7999999999999999999999999999999999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.7e-16  Score=85.37  Aligned_cols=79  Identities=27%  Similarity=0.360  Sum_probs=71.6

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      ....+|+||+++|.+++|+   ++++++++++.|+.|++|++.++..+..+.+|...|..+++++++..++++..++.+.
T Consensus         8 ~~~~~L~GH~~~I~~l~~s---p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             SCSCEEECCSSCEEEEEEC---SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             CccEEEcCCCCCeEEEEEc---CCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            3456799999999999999   7999999999999999999999999999999999999999999999999888877765


Q ss_pred             Ec
Q psy6444          86 AL   87 (88)
Q Consensus        86 ~~   87 (88)
                      .|
T Consensus        85 ~~   86 (317)
T d1vyhc1          85 LW   86 (317)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=4.1e-16  Score=85.07  Aligned_cols=75  Identities=21%  Similarity=0.382  Sum_probs=66.1

Q ss_pred             eEEecCCCCCE-EEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           8 PLTCSGHTRPV-VHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         8 ~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      ..+|+||...| .|+++     +++++++++.|+.|++||+.+++.+..+.+|.+.|.+++|+++ ..+++++.|+.+++
T Consensus         5 ~~tL~GH~~~vitc~~~-----~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE-----ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEEE-----CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccc
Confidence            56789999885 56554     4789999999999999999999999999999999999999985 57889999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      |+
T Consensus        79 w~   80 (355)
T d1nexb2          79 WD   80 (355)
T ss_dssp             EE
T ss_pred             cc
Confidence            85

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.1e-16  Score=85.31  Aligned_cols=78  Identities=9%  Similarity=-0.010  Sum_probs=65.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC-----EEEEecCCCCeEEEEEECCCCCeEEEecC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD-----WIGTFEGHKGCVWGVDINKDASKAASGAA   80 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   80 (88)
                      +.+.++ .|...|.+++|+   ++|+++++++ |+.|++|++....     ......+|.+.|.+++|+|++.++++++.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs---~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~  117 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTIS---NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEEC---SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             eEEEEC-CCCCcEEEEEEC---CCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence            445555 699999999999   7999999987 7899999987543     22334568899999999999999999999


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      |+.|++||
T Consensus       118 dg~i~iwd  125 (337)
T d1gxra_         118 ASTLSIWD  125 (337)
T ss_dssp             SSEEEEEE
T ss_pred             cccccccc
Confidence            99999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=5.4e-16  Score=86.18  Aligned_cols=80  Identities=23%  Similarity=0.380  Sum_probs=71.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEE------CCCCCeEEEec
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDI------NKDASKAASGA   79 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~   79 (88)
                      ........|...+.+++|+   ++++.+++++.|+.|++||+.+++.+..+.+|.+.|.++++      +|++.++++++
T Consensus       299 ~~~~~~~~~~~~v~~~~~s---~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         299 TCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             ceeeecccccceEEEEEEC---CCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence            3455666788999999999   79999999999999999999999999999999999998865      56788999999


Q ss_pred             CCCeEEEcC
Q psy6444          80 ADFQAKALK   88 (88)
Q Consensus        80 ~d~~i~~~~   88 (88)
                      .|++|++|+
T Consensus       376 ~Dg~I~iW~  384 (388)
T d1erja_         376 GDCKARIWK  384 (388)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.1e-16  Score=84.03  Aligned_cols=79  Identities=24%  Similarity=0.381  Sum_probs=68.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      +.++.++|+||++.|.. +++   ++|+.+++++.|+.|++|++.+++.+..+.+|.+.|.+++|+++  ++++++.|+.
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~---~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQ---FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEE---EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             CCCcCEEECCcCCceEE-EEE---ECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccc
Confidence            34567789999999754 355   46899999999999999999999999999999999999999864  8899999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++|+
T Consensus        79 ~~~~~   83 (342)
T d2ovrb2          79 LKVWN   83 (342)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            99885

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-15  Score=82.78  Aligned_cols=77  Identities=22%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             eEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444           8 PLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ......|...|.+++|+   ++++.+++++.|+.+++|+..++..+..+. |...|.+++|+|+++++++++.|++|++|
T Consensus       258 ~~~~~~~~~~i~~v~~s---~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         258 KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             cccccccccccceEEEC---CCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            34566788999999999   799999999999999999999888877665 67889999999999999999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       334 d  334 (337)
T d1gxra_         334 E  334 (337)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=8.4e-15  Score=80.40  Aligned_cols=82  Identities=29%  Similarity=0.399  Sum_probs=72.3

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe-------cCCCCeEEEEEECCCCCeEE
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF-------EGHKGCVWGVDINKDASKAA   76 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~   76 (88)
                      .++....+.+|...|.++.|+   ++++.+++++.|+.+.+|+...+.....+       .+|...|.+++|+|++.+++
T Consensus       178 ~~~~~~~~~~~~~~i~~v~~~---p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  254 (311)
T d1nr0a1         178 PFKFKSTFGEHTKFVHSVRYN---PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA  254 (311)
T ss_dssp             TBEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccC---ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEE
Confidence            456677888899999999999   79999999999999999999887766554       35678899999999999999


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      +++.|+.+++||
T Consensus       255 tgs~Dg~v~iwd  266 (311)
T d1nr0a1         255 SASADKTIKIWN  266 (311)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EEeCCCeEEEEE
Confidence            999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.1e-15  Score=82.84  Aligned_cols=80  Identities=11%  Similarity=-0.009  Sum_probs=67.2

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE---EEEecCCCCeEEEEEECCCC-CeEEEecCC
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW---IGTFEGHKGCVWGVDINKDA-SKAASGAAD   81 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d   81 (88)
                      +.+..+++|...|.+++|+   +++++|++++.|+.|++|++..+..   +....+|...|.+++|++++ .++++++.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fs---p~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKII---PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEE---GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CeEEcCCCCCCCEEEEEEe---CCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            4567788999999999999   7999999999999999999865442   23334689999999999864 477899999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++|+
T Consensus        79 ~~v~~w~   85 (342)
T d1yfqa_          79 GEILKVD   85 (342)
T ss_dssp             SCEEEEC
T ss_pred             cceeeee
Confidence            9999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=8.3e-16  Score=85.83  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=64.9

Q ss_pred             CCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          15 TRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        15 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      ..+|.|++|+   +++..+++++.++.|.+|+...++  .+..+.+|.+.|.+++|+|++.++++++.|+++++||
T Consensus         7 ~~pIt~~~~s---~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWN---KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEEC---TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEEC---CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            4789999999   899999999999999999987664  5677889999999999999999999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.5e-15  Score=79.08  Aligned_cols=75  Identities=17%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      .+....+|...|.|++     ++++.+++++.|+.|++|++.+++.+..+.+|.+.|.+++|  ++.++++++.|+.+++
T Consensus         7 ~i~~~~~~~~~V~c~~-----~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQ-----YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CEECCCSSCCCEEEEE-----CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             EEeccCCCCCCEEEEE-----EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence            3445566778898864     46899999999999999999999999999999999998876  5679999999999999


Q ss_pred             cC
Q psy6444          87 LK   88 (88)
Q Consensus        87 ~~   88 (88)
                      |+
T Consensus        80 ~~   81 (293)
T d1p22a2          80 WD   81 (293)
T ss_dssp             EE
T ss_pred             cc
Confidence            85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=5.7e-15  Score=81.09  Aligned_cols=82  Identities=23%  Similarity=0.203  Sum_probs=73.7

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      .++....+.+|...|.+++|+   ++++ .+++++.|+.+++|+..++.....+..|...|.++.++|++.++++++.|+
T Consensus       135 ~~~~~~~l~~h~~~v~~v~~~---~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~  211 (311)
T d1nr0a1         135 TGTSNGNLTGQARAMNSVDFK---PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  211 (311)
T ss_dssp             TCCBCBCCCCCSSCEEEEEEC---SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccc---ccceeeecccccccccccccccccccccccccccccccccccCccccccccccccc
Confidence            345667788999999999999   6776 588899999999999998888888999999999999999999999999999


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+++||
T Consensus       212 ~v~~~d  217 (311)
T d1nr0a1         212 TIVLYN  217 (311)
T ss_dssp             CEEEEE
T ss_pred             cccccc
Confidence            999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=6.5e-15  Score=82.16  Aligned_cols=79  Identities=10%  Similarity=0.049  Sum_probs=69.6

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCE--EEEecCCCCeEEEEEECCCCCeEEEecCCCeE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDW--IGTFEGHKGCVWGVDINKDASKAASGAADFQA   84 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i   84 (88)
                      .+..+++|.++|.+++|+   ++++.+++++.|+.+++|++..+..  ...+.++...+.+++|+|+++.+++++.|+.+
T Consensus        43 ~~~~l~gH~~~V~~l~fs---p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i  119 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWA---PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI  119 (371)
T ss_dssp             EEEEEECCSSCEEEEEEE---TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSE
T ss_pred             EEEEecCCCCCEEEEEEC---CCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcc
Confidence            567789999999999999   7999999999999999999876653  34456788899999999999999999999999


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++|+
T Consensus       120 ~i~~  123 (371)
T d1k8kc_         120 SICY  123 (371)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            9884

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=4e-15  Score=82.62  Aligned_cols=73  Identities=21%  Similarity=0.317  Sum_probs=63.5

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec------------------CCCCeEEEEEECCCCC
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE------------------GHKGCVWGVDINKDAS   73 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~   73 (88)
                      .+|++.|.+++|+   ++|+++++|+ |+.+++|++.++..+..+.                  .+...|.+++|+|++.
T Consensus        59 ~~H~~~V~~l~fs---~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          59 LDHTSVVCCVKFS---NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             EECSSCCCEEEEC---TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCCcEEEEEEC---CCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            3699999999999   7999999986 7899999998887665553                  3556799999999999


Q ss_pred             eEEEecCCCeEEEcC
Q psy6444          74 KAASGAADFQAKALK   88 (88)
Q Consensus        74 ~~~~~~~d~~i~~~~   88 (88)
                      ++++++.|+.+++||
T Consensus       135 ~l~s~~~dg~v~i~~  149 (388)
T d1erja_         135 FLATGAEDRLIRIWD  149 (388)
T ss_dssp             EEEEEETTSCEEEEE
T ss_pred             cceeccccccccccc
Confidence            999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=5.6e-14  Score=75.57  Aligned_cols=78  Identities=13%  Similarity=0.066  Sum_probs=65.0

Q ss_pred             EecCCCCCEEEEEEEec-------CCCCcEEEEEeCCCCEEEEECCC-CCEEEEecCCCCeEEEEEECCCCCeEEEecCC
Q psy6444          10 TCSGHTRPVVHLAFSDI-------TESGYFLISACKDGKPMLRQGDT-GDWIGTFEGHKGCVWGVDINKDASKAASGAAD   81 (88)
Q Consensus        10 ~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   81 (88)
                      .+.+|..+|.+++|+|.       ..++..+++++.|+.+++|++.+ ...+..+.+|...|.++.|++++ .+++++.|
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC
Confidence            45679999999999842       13457899999999999999876 44667778899999999999876 58899999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++|+
T Consensus       279 ~~v~iW~  285 (287)
T d1pgua2         279 ACIKRWN  285 (287)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            9999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=4.3e-14  Score=77.75  Aligned_cols=76  Identities=25%  Similarity=0.280  Sum_probs=62.7

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEEC---CCCCeEEEecCCCeEEEc
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDIN---KDASKAASGAADFQAKAL   87 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~d~~i~~~   87 (88)
                      ..+|...|.+++|+|  ..+..+++++.|+.+++|+..++..+..+.+|...+..+.|+   +++.++++++.|+.+++|
T Consensus       201 ~~~~~~~v~~v~~~p--d~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iw  278 (325)
T d1pgua1         201 HHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW  278 (325)
T ss_dssp             SSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred             ccCCCCccEEeeecc--ccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEE
Confidence            345678899999994  356899999999999999999999888888877665443333   678899999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       279 d  279 (325)
T d1pgua1         279 D  279 (325)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.50  E-value=2.1e-13  Score=73.56  Aligned_cols=75  Identities=20%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEE---EEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWI---GTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ...|...|.+++|+   ++++.+++++.++.+.+|++.++...   ..+.+|...|.+++|+|++.++++++.|+.+++|
T Consensus       175 ~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         175 TIVHPAEITSVAFS---NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             EEECSSCEEEEEEC---TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEE
Confidence            34588999999999   79999999999999999998776544   3456688999999999999999999999999999


Q ss_pred             C
Q psy6444          88 K   88 (88)
Q Consensus        88 ~   88 (88)
                      |
T Consensus       252 d  252 (299)
T d1nr0a2         252 N  252 (299)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=1.4e-12  Score=70.02  Aligned_cols=73  Identities=11%  Similarity=0.046  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE-EecCCCCeEEEEEECCC----------CCeEEEecCC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG-TFEGHKGCVWGVDINKD----------ASKAASGAAD   81 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~----------~~~~~~~~~d   81 (88)
                      .|...+.+++|+   +++.++++++.++.+++|+..++.... .+.+|...|.+++|+|.          +.++++++.|
T Consensus       160 ~~~~~v~~~~~s---~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D  236 (287)
T d1pgua2         160 PLRAKPSYISIS---PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  236 (287)
T ss_dssp             CCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             ccCCceeEEEec---cCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence            367889999999   799999999999999999998776543 46778999999999874          4578999999


Q ss_pred             CeEEEcC
Q psy6444          82 FQAKALK   88 (88)
Q Consensus        82 ~~i~~~~   88 (88)
                      +.+++||
T Consensus       237 ~~i~iw~  243 (287)
T d1pgua2         237 TNIFIYS  243 (287)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            9999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=5.9e-12  Score=69.09  Aligned_cols=82  Identities=15%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCc-EEEEEeCCCCEEEEECCCCCEEEEe---cCCCCeEEEEEECCC-CCeEEEe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGY-FLISACKDGKPMLRQGDTGDWIGTF---EGHKGCVWGVDINKD-ASKAASG   78 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~-~~~~~~~   78 (88)
                      .++.+..+.+|...+.++.|+   ++++ .+++++.|+.+++|+....+.....   ..+...|.+++|+|+ +.+++++
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~---~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~  224 (325)
T d1pgua1         148 SGNSLGEVSGHSQRINACHLK---QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV  224 (325)
T ss_dssp             TCCEEEECCSCSSCEEEEEEC---SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             ccccceeeeeccccccccccc---ccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccc
Confidence            456778888999999999999   5664 5778999999999998776654444   456778999999996 6788899


Q ss_pred             cCCCeEEEcC
Q psy6444          79 AADFQAKALK   88 (88)
Q Consensus        79 ~~d~~i~~~~   88 (88)
                      +.|+.+++||
T Consensus       225 ~~d~~i~iwd  234 (325)
T d1pgua1         225 GSDRKISCFD  234 (325)
T ss_dssp             ETTCCEEEEE
T ss_pred             ccccceeeee
Confidence            9999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.8e-12  Score=72.67  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=58.8

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEe------cCCCCeEEEEEECCCCCeEEEecCCCe---E
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTF------EGHKGCVWGVDINKDASKAASGAADFQ---A   84 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~d~~---i   84 (88)
                      +...+.+++|+   +++ .+++++.|+.|++|++.+++.+..+      .+|...|.+++|+|++.++++++.|++   +
T Consensus       183 ~~~~~~~v~~s---~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i  258 (393)
T d1sq9a_         183 PSQFATSVDIS---ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI  258 (393)
T ss_dssp             SCCCCCEEEEC---TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred             CCCcEEEEEEC---CCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCccee
Confidence            44557889998   676 8899999999999999888765543      467889999999999999999998864   7


Q ss_pred             EEcC
Q psy6444          85 KALK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      ++||
T Consensus       259 ~lwd  262 (393)
T d1sq9a_         259 TLYE  262 (393)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            8885

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.9e-12  Score=68.38  Aligned_cols=77  Identities=27%  Similarity=0.426  Sum_probs=60.9

Q ss_pred             eeEEecC---CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-----CCCCeEEEEEECCCCCeEEEe
Q psy6444           7 IPLTCSG---HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-----GHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus         7 ~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      ....+.+   |...+.++.+     +++.+++++.|+.|++|++.+++.+..+.     +|...|++++|+|++..++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g  323 (342)
T d2ovrb2         249 CLQTLQGPNKHQSAVTCLQF-----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG  323 (342)
T ss_dssp             EEEEECSTTSCSSCEEEEEE-----CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             ccccccccceeeeceeeccc-----CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEE
Confidence            3444444   4455666655     46799999999999999999998877763     467789999999999999999


Q ss_pred             cCCCe----EEEcC
Q psy6444          79 AADFQ----AKALK   88 (88)
Q Consensus        79 ~~d~~----i~~~~   88 (88)
                      +.||+    +++||
T Consensus       324 ~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         324 SRNGTEETKLLVLD  337 (342)
T ss_dssp             CSSSSSCCEEEEEE
T ss_pred             eCCCCCeeEEEEEe
Confidence            88885    88886

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=4.6e-11  Score=64.79  Aligned_cols=80  Identities=21%  Similarity=0.189  Sum_probs=71.0

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+....++...+.+..++   +++..+++++.|+.+++|+..++..+..+.+|...|.++++++  .++++++.|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~  264 (355)
T d1nexb2         190 QMKCLYILSGHTDRIYSTIYD---HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGS  264 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSE
T ss_pred             cccceeeeecccccccccccc---ccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccc
Confidence            345666777888889999999   7999999999999999999999999999999999999998874  68899999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |++||
T Consensus       265 i~iwd  269 (355)
T d1nexb2         265 IRGWD  269 (355)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            99996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.29  E-value=6.6e-11  Score=64.64  Aligned_cols=72  Identities=11%  Similarity=0.101  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCC--CEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDG--KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +|...+.+++|+   ++|+.++.++.+.  .+.+|+...+. +..+..+...+..++|+|++.++++++.++.+++|+
T Consensus        40 ~~~~~v~~~~~s---pDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          40 PEPLRIRYVRRG---GDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD  113 (360)
T ss_dssp             SCCSCEEEEEEC---SSSEEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCEEEEEEC---CCCCEEEEEEcCCCCEEEEEECCCCc-EEEeeCCCceEEeeeecccccccceecccccccccc
Confidence            688999999999   7999888766543  68899998665 456778899999999999999999999999999885

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1.2e-11  Score=66.72  Aligned_cols=71  Identities=23%  Similarity=0.111  Sum_probs=55.8

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      +|...+.+++|+   +++..|++++.|+.|++||+.+++.+..+..+. ....++|++++..+++++.|...++|
T Consensus       249 ~~~~~v~~l~~s---p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         249 NLAYPVNSIEFS---PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             SSCCCEEEEEEC---TTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             cccccceeEEec---CCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence            456678999999   799999999999999999999888888776432 23345677788888888777665544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=4.7e-11  Score=68.04  Aligned_cols=82  Identities=16%  Similarity=0.010  Sum_probs=64.1

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCC--EEEEe---cCCCCeEEEEEECCCCCeE-E
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGD--WIGTF---EGHKGCVWGVDINKDASKA-A   76 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~i~~~~~~~~~~~~-~   76 (88)
                      ..++.+..+..+ ..+..++|+   ++|+.+++++.|+.+.+||+.++.  .+..+   ..+.+.+....|+|||+++ +
T Consensus        50 ~t~~v~~~~~~g-~~~~~v~fS---pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v  125 (432)
T d1qksa2          50 STYEIKTVLDTG-YAVHISRLS---ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA  125 (432)
T ss_dssp             TTCCEEEEEECS-SCEEEEEEC---TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             CCCcEEEEEeCC-CCeeEEEEC---CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence            456778888876 468999999   899999999999999999987665  22333   3445556666788899976 5


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      ++..++++++||
T Consensus       126 s~~~~~~v~i~d  137 (432)
T d1qksa2         126 GAYWPPQYVIMD  137 (432)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EcCCCCeEEEEe
Confidence            778899999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.19  E-value=5.8e-11  Score=67.21  Aligned_cols=82  Identities=10%  Similarity=-0.063  Sum_probs=63.9

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEE--Ee---cCCCCeEEEEEECCCCCeEE-
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIG--TF---EGHKGCVWGVDINKDASKAA-   76 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~~~~~~-   76 (88)
                      .+++.+.++..| ..+..++|+   |+|+.+++++.|+.+.+||+.++....  .+   .++.+.+..+.|+|||++++ 
T Consensus        50 ~t~~~~~~l~~g-~~~~~vafS---PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v  125 (426)
T d1hzua2          50 DSKKIVKVIDTG-YAVHISRMS---ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA  125 (426)
T ss_dssp             TTCSEEEEEECC-SSEEEEEEC---TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             CCCcEEEEEeCC-CCeeEEEEC---CCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence            456788888877 458899999   899999999999999999998776322  22   34555666778889999875 


Q ss_pred             EecCCCeEEEcC
Q psy6444          77 SGAADFQAKALK   88 (88)
Q Consensus        77 ~~~~d~~i~~~~   88 (88)
                      ++..++.+++||
T Consensus       126 ~~~~~~~v~i~d  137 (426)
T d1hzua2         126 GAYWPPQFAIMD  137 (426)
T ss_dssp             EEEESSEEEEEE
T ss_pred             eecCCCeEEEEc
Confidence            555888899885

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.4e-10  Score=58.10  Aligned_cols=78  Identities=24%  Similarity=0.331  Sum_probs=65.3

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQ   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   83 (88)
                      .++.+..+.++...+..+.++     +..+++++.|+.+++|++.+...+....++...+...  ++++..+++++.|+.
T Consensus       167 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~  239 (293)
T d1p22a2         167 TCEFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGK  239 (293)
T ss_dssp             TCCEEEEEECCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--ECCSSEEEEEETTSC
T ss_pred             CCcEEEEEcccccccccccCC-----CCeEEEecCCCEEEEEecccceeeeeecccceeeeec--cccceEEEEEcCCCE
Confidence            456677888888888877665     5689999999999999999888888888888877654  567788999999999


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      +++||
T Consensus       240 i~iwd  244 (293)
T d1p22a2         240 IKVWD  244 (293)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.11  E-value=6.3e-10  Score=60.70  Aligned_cols=71  Identities=14%  Similarity=0.074  Sum_probs=62.3

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      +..+..+..|...+.+++|+   +++..+++++.++.+.+|+...+.....+..+...+..++|+|++++++.+
T Consensus        75 ~~~~~~~~~~~~~v~~~~~s---pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          75 TGKAEKFEENLGNVFAMGVD---RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             TCCEEECCCCCCSEEEEEEC---TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             CCcEEEeeCCCceEEeeeec---ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence            34456677899999999999   899999999999999999999888888888888888999999999998753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.04  E-value=1.1e-09  Score=61.97  Aligned_cols=56  Identities=13%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          32 FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+++...++.+.+||..+++.+..+..+. .+..++|+|||+++++++.|+.+++||
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd   89 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMID   89 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEE
Confidence            45778889999999999999999998764 588999999999999999999999996

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.93  E-value=2e-09  Score=58.32  Aligned_cols=61  Identities=7%  Similarity=-0.126  Sum_probs=52.3

Q ss_pred             CCCcEEEEEeCCCCEEEEECCCCCEEEEecC-CCCeEEEEEECCCCCeE-EEecCCCeEEEcC
Q psy6444          28 ESGYFLISACKDGKPMLRQGDTGDWIGTFEG-HKGCVWGVDINKDASKA-ASGAADFQAKALK   88 (88)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~d~~i~~~~   88 (88)
                      ++++++++++.++.|.+||+.+++.+..+.. +...+..+.|+||++++ +++..++.+.+||
T Consensus         6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d   68 (346)
T d1jmxb_           6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID   68 (346)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence            7899999999999999999999988887764 45567889999999977 4667889999986

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.88  E-value=9e-09  Score=58.55  Aligned_cols=56  Identities=13%  Similarity=0.061  Sum_probs=50.5

Q ss_pred             EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          32 FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+++.+.++.+.+||..+++.+..+..+ ..+..++|+|||+++++++.|+.+++||
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d   89 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMID   89 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEE
Confidence            3578999999999999999999999876 4689999999999999999999999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.76  E-value=1.5e-07  Score=50.64  Aligned_cols=70  Identities=13%  Similarity=-0.070  Sum_probs=55.2

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .+...+....++   +++..++..  ++.+.+||+.++..+..+. +...+.+++|+|+|.+++.++.++.|++||
T Consensus       238 ~~~~~~~~~~~~---~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         238 IMDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             ECSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CCCcceEEEEec---ccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            344556666677   677777655  3679999999888777765 456678899999999999999999999996

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=5.2e-08  Score=52.63  Aligned_cols=73  Identities=11%  Similarity=-0.059  Sum_probs=56.4

Q ss_pred             ecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          11 CSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      +..+...+....++   +++..++.... +.+.+||..+++.+..+. ....+..++|+||+.++++++.|+.|++||
T Consensus       247 ~~~~~~~~~~~~~~---~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         247 FADLTELYFTGLRS---PKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             EEECSSCEEEEEEC---SSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             eecccceeEEEEEe---CCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            34466667777777   56655555554 469999999888777665 345688999999999999999999999997

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.69  E-value=4.9e-08  Score=52.53  Aligned_cols=58  Identities=5%  Similarity=-0.076  Sum_probs=48.4

Q ss_pred             cEEEEEeCCCCEEEEECCCCCEEEEecC--CCCeEEEEEECCCCCeE-EEecCCCeEEEcC
Q psy6444          31 YFLISACKDGKPMLRQGDTGDWIGTFEG--HKGCVWGVDINKDASKA-ASGAADFQAKALK   88 (88)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~d~~i~~~~   88 (88)
                      +++++++.++.|.+||..+.+.+..+..  +...+..++++||++++ ++++.++.|.+||
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D   62 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE
Confidence            5789999999999999999888887754  34556789999999987 4667889999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.64  E-value=8.9e-07  Score=46.92  Aligned_cols=69  Identities=9%  Similarity=-0.041  Sum_probs=52.1

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeC---CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeE-EEecCCCeEEEcC
Q psy6444          16 RPVVHLAFSDITESGYFLISACK---DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKA-ASGAADFQAKALK   88 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~d~~i~~~~   88 (88)
                      .....+.++   +++..++.+..   ++.+.+||..+++.+..+..+ ..+..++|+|+++++ ++++.+++|++||
T Consensus       200 ~~~~~~~~~---~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         200 AAPSGIAVN---PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             SEEEEEEEC---TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCcceeecc---ccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            345567788   67876665433   356999999988877776643 457899999999976 5778899999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.55  E-value=2.7e-06  Score=45.00  Aligned_cols=81  Identities=12%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             CccceeEEecCCCCCEEEEEEEecCCCCcEE-EEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEE-EecC
Q psy6444           3 SIRQIPLTCSGHTRPVVHLAFSDITESGYFL-ISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAA-SGAA   80 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~   80 (88)
                      .+++.+.++... .....++|+   ++|+++ +++..++.+.+||..++..+..+..+. ....+.+++++..++ +...
T Consensus        20 ~t~~~~~~i~~g-~~p~~va~s---pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   94 (301)
T d1l0qa2          20 TSNKVTATIPVG-SNPMGAVIS---PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMA   94 (301)
T ss_dssp             TTTEEEEEEECS-SSEEEEEEC---TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETT
T ss_pred             CCCeEEEEEECC-CCceEEEEe---CCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccc
Confidence            345666666643 456789999   799876 566778899999999888888887664 457889999988665 4556


Q ss_pred             CCeEEEcC
Q psy6444          81 DFQAKALK   88 (88)
Q Consensus        81 d~~i~~~~   88 (88)
                      +..+.+|+
T Consensus        95 ~~~~~~~~  102 (301)
T d1l0qa2          95 SSTLSVID  102 (301)
T ss_dssp             TTEEEEEE
T ss_pred             cceeeecc
Confidence            67777764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=5.5e-07  Score=48.45  Aligned_cols=72  Identities=8%  Similarity=-0.023  Sum_probs=51.1

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEE-EeCCCCEEEEECCCCCEEE---EecCCCCeEEEEEECCCCCeEEEecC-CCeEEEc
Q psy6444          13 GHTRPVVHLAFSDITESGYFLIS-ACKDGKPMLRQGDTGDWIG---TFEGHKGCVWGVDINKDASKAASGAA-DFQAKAL   87 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~-d~~i~~~   87 (88)
                      .|.+.+..++|+   ++|+.|+. +..++.+.+|++.......   ........+..++|+|++++++.++. +..+.+|
T Consensus        34 ~~~~~v~~la~s---pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          34 DVPGQVQPMVVS---PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             ECSSCCCCEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cCCCCEeEEEEe---CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            466888999999   79998855 4457899999986543221   12223455677999999999887764 5667665

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=2.6e-07  Score=49.75  Aligned_cols=58  Identities=10%  Similarity=0.038  Sum_probs=43.2

Q ss_pred             cEEEEEeCCCCEEEEECCCCCEE--EEecCCCCeEEEEEECCCCCeEE-EecCCCeEEEcC
Q psy6444          31 YFLISACKDGKPMLRQGDTGDWI--GTFEGHKGCVWGVDINKDASKAA-SGAADFQAKALK   88 (88)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~i~~~~   88 (88)
                      ..++++..++.|++|++.....+  .....+.+.+..++|+||+++++ ++..|+.+++|+
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~   65 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR   65 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            45677888999999998754332  22234668889999999999885 555688998874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.27  E-value=2.3e-06  Score=48.53  Aligned_cols=72  Identities=11%  Similarity=-0.037  Sum_probs=54.5

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEeC---------CCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCC
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISACK---------DGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADF   82 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~   82 (88)
                      ..|...+.++.|+   |+|+.++.++.         ++.+.+|++.++. +..+..+...+..+.|+|+|..++.. .+.
T Consensus        58 ~~~~~~i~~~~~S---pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~  132 (470)
T d2bgra1          58 DEFGHSINDYSIS---PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNN  132 (470)
T ss_dssp             TTSSSCCCEEEEC---TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETT
T ss_pred             hhccCccceeEEC---CCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecc
Confidence            3345678999999   89998887754         3457789998655 56677788889999999999999875 445


Q ss_pred             eEEEcC
Q psy6444          83 QAKALK   88 (88)
Q Consensus        83 ~i~~~~   88 (88)
                      .+.+|+
T Consensus       133 ~l~~~~  138 (470)
T d2bgra1         133 DIYVKI  138 (470)
T ss_dssp             EEEEES
T ss_pred             cceEEE
Confidence            566553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.24  E-value=1.5e-05  Score=43.53  Aligned_cols=56  Identities=11%  Similarity=-0.051  Sum_probs=43.1

Q ss_pred             EEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCe--EEEecCCCeEEEcC
Q psy6444          32 FLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASK--AASGAADFQAKALK   88 (88)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~d~~i~~~~   88 (88)
                      .++....++.+.+|+..+++.+..+. +...+..+.|+||++.  +++.+.|+++++||
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            33445556678889998888777665 4566889999999984  46788999999997

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.18  E-value=1.1e-05  Score=44.15  Aligned_cols=72  Identities=11%  Similarity=-0.020  Sum_probs=53.5

Q ss_pred             cCCCCCEEEEEEEecCCCCcEEEEEe-----CCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEec-------
Q psy6444          12 SGHTRPVVHLAFSDITESGYFLISAC-----KDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGA-------   79 (88)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------   79 (88)
                      ..+.+++..++++   ++|+.++...     ....+.+||..+++.+..+..+..  ..+.|+|||.+++.++       
T Consensus        17 ~~~~~p~~~~a~s---pdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPG---ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccC---CCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCccc
Confidence            4567788889999   7898776542     234588899999998888776543  3689999999988754       


Q ss_pred             ---CCCeEEEcC
Q psy6444          80 ---ADFQAKALK   88 (88)
Q Consensus        80 ---~d~~i~~~~   88 (88)
                         .++.+.+||
T Consensus        92 ~~~~~~~v~v~D  103 (373)
T d2madh_          92 KGKRTDYVEVFD  103 (373)
T ss_pred             ccccceEEEEEE
Confidence               346788886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.12  E-value=1.4e-05  Score=43.33  Aligned_cols=64  Identities=13%  Similarity=0.106  Sum_probs=46.8

Q ss_pred             EEEEecCCCCcEEEEEeCC----------CCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC--eEEEecCCCeEEEcC
Q psy6444          21 LAFSDITESGYFLISACKD----------GKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS--KAASGAADFQAKALK   88 (88)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~i~~~~   88 (88)
                      ++++   +++..++....+          ..+.+|+..+++.+..+.. ...+..++|+|+++  +++++..|+.|++||
T Consensus       254 ~~~~---~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         254 VAYH---RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHD  329 (355)
T ss_dssp             EEEE---TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             EEEe---CCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence            5667   677666654432          2578999988887776653 35578899999987  445777899999996

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.82  E-value=5.2e-05  Score=41.61  Aligned_cols=79  Identities=13%  Similarity=-0.170  Sum_probs=53.0

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEe----------CCCCEEEEECCCCCEEEEecCCC-------CeEEEEE
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISAC----------KDGKPMLRQGDTGDWIGTFEGHK-------GCVWGVD   67 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~   67 (88)
                      ++.+.++..+...  .+.|+   ++|+.++..+          .++.|.+||..+++.+..+..+.       .....+.
T Consensus        56 ~~~~~~~~~~~~~--~~a~s---pDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a  130 (368)
T d1mdah_          56 GVTLGHSLGAFLS--LAVAG---HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG  130 (368)
T ss_dssp             TEEEEEEEECTTC--EEEEC---TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred             CcEEEEEeCCCCC--cceEC---CCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceE
Confidence            3444555554444  46788   7998777654          25569999999888776654321       1223578


Q ss_pred             ECCCCCeEEEec-CCCeEEEcC
Q psy6444          68 INKDASKAASGA-ADFQAKALK   88 (88)
Q Consensus        68 ~~~~~~~~~~~~-~d~~i~~~~   88 (88)
                      |+||+++++.+. .++.+.+||
T Consensus       131 ~SpDGk~l~va~~~~~~v~~~d  152 (368)
T d1mdah_         131 NCASSACLLFFLFGSSAAAGLS  152 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEE
T ss_pred             ECCCCCEEEEEeCCCCeEEEEE
Confidence            999999887654 568888875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.00026  Score=38.80  Aligned_cols=47  Identities=11%  Similarity=0.005  Sum_probs=36.5

Q ss_pred             CEEEEECCCCCEEEEecCCCCeEEEEEECCCCC--eEEEecCCCeEEEcC
Q psy6444          41 KPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS--KAASGAADFQAKALK   88 (88)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~i~~~~   88 (88)
                      .+.+||..+++.+..+.. ...+..++|+||++  .+++...++.+.+||
T Consensus       295 ~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D  343 (368)
T d1mdah_         295 NTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             EEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            477889988887766653 35677899999987  345777889999997

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.50  E-value=0.00026  Score=38.13  Aligned_cols=44  Identities=7%  Similarity=0.115  Sum_probs=34.1

Q ss_pred             CCEEEEEEEecCCCCc--EEEEEeCCCCEEEEECCCCCEEEEecCCCCe
Q psy6444          16 RPVVHLAFSDITESGY--FLISACKDGKPMLRQGDTGDWIGTFEGHKGC   62 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (88)
                      ..+.+++|+   ++|+  .++++..++.|.+||..+++.+..+......
T Consensus       300 ~~~~~~a~s---pDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         300 HEIDSINVS---QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG  345 (355)
T ss_dssp             EEECEEEEC---CSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred             CCEEEEEEc---CCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence            346688999   7886  4556777899999999999998888765443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.45  E-value=0.0018  Score=34.70  Aligned_cols=75  Identities=16%  Similarity=0.160  Sum_probs=52.4

Q ss_pred             ceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEE
Q psy6444           6 QIPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAK   85 (88)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~   85 (88)
                      +.+..+... ..+..++++   ++|+.+++...++.|..++.. +. ...+......+..+++.+++.++++...++.+.
T Consensus        19 ~v~~~~p~~-~~~e~iAv~---pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASA---PDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEEECTT-CCEEEEEEC---TTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cEEEECCCC-CCcCCEEEC---CCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEE
Confidence            344444432 247789999   899999998888888777754 43 334444557889999999999888766555544


Q ss_pred             E
Q psy6444          86 A   86 (88)
Q Consensus        86 ~   86 (88)
                      .
T Consensus        93 ~   93 (302)
T d2p4oa1          93 V   93 (302)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.34  E-value=0.00053  Score=38.72  Aligned_cols=71  Identities=7%  Similarity=-0.129  Sum_probs=49.7

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCC------------------CCeEEEEEE
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGH------------------KGCVWGVDI   68 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~i~~~~~   68 (88)
                      .+..+..+...+..+.|+   |+|+.++... +..+.+++...+.........                  .+....+.|
T Consensus       103 ~~~~l~~~~~~~~~~~~S---PDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1         103 QLITEERIPNNTQWVTWS---PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             EECCSSCCCTTEEEEEEC---SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             cccccccCCccccccccc---cCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence            355667788889999999   7999988865 567888888766544332211                  122344679


Q ss_pred             CCCCCeEEEecCC
Q psy6444          69 NKDASKAASGAAD   81 (88)
Q Consensus        69 ~~~~~~~~~~~~d   81 (88)
                      +|||..++....|
T Consensus       179 SPDGk~ia~~~~d  191 (470)
T d2bgra1         179 SPNGTFLAYAQFN  191 (470)
T ss_dssp             CTTSSEEEEEEEE
T ss_pred             CCCCCccceeEec
Confidence            9999999876644

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.004  Score=32.26  Aligned_cols=71  Identities=14%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             ccceeEEecCCCCCEEEEEEEecCCCCcEEEEEeCCC-C--EEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444           4 IRQIPLTCSGHTRPVVHLAFSDITESGYFLISACKDG-K--PMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      ++...+.+..+...+...+|+   |+|+.++...... .  +...+...+. ......+........|+|++..++..
T Consensus        27 dG~~~~~l~~~~~~~~sP~wS---PDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~i~~~  100 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWS---PDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSKLAFA  100 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEecCCCceeeeEEC---CCCCEEEEEEeeccCcceeeeecccCc-eeEEeeeecccccceecCCCCeeeEe
Confidence            444445555566778899999   8999888654433 2  4444554444 34555566777888999999988753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.90  E-value=0.0086  Score=32.38  Aligned_cols=64  Identities=8%  Similarity=-0.023  Sum_probs=46.5

Q ss_pred             EEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCC-eEEEecCCCeEEE
Q psy6444          20 HLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDAS-KAASGAADFQAKA   86 (88)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~i~~   86 (88)
                      .+++.   .+|+..++....+.|..|+...+..+..+........+++|.++++ ++++.+.++.|..
T Consensus       230 GiavD---~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         230 GMDFD---EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EEEEB---TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeEEe---cCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            46666   7888878777778899998776655555555556778899999886 5567777777654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.06  E-value=0.027  Score=28.99  Aligned_cols=48  Identities=17%  Similarity=0.138  Sum_probs=35.3

Q ss_pred             CC--CcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEE
Q psy6444          28 ES--GYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAAS   77 (88)
Q Consensus        28 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   77 (88)
                      |+  |+.++... ++.+.+.++..+.. ..+..+.+......|+|||+.++-
T Consensus         8 Pdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf   57 (281)
T d1k32a2           8 PDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAI   57 (281)
T ss_dssp             EEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEE
T ss_pred             CCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEE
Confidence            46  77766554 35677778886664 556667778888999999998873

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.032  Score=28.71  Aligned_cols=58  Identities=10%  Similarity=0.074  Sum_probs=35.5

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCC-CCEEEE--ECCCCCEEEEecCCCCeEEEEEECCCCCeEE
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKD-GKPMLR--QGDTGDWIGTFEGHKGCVWGVDINKDASKAA   76 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   76 (88)
                      .........|+   +++..++..+.+ +...+|  +...+..  .............|+|||+.|+
T Consensus       169 ~~~~~~~~~~s---pdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         169 EGSQNQDADVS---SDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             SSSEEEEEEEC---TTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEE
T ss_pred             ccccccccccc---cccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEE
Confidence            34456667888   788877765554 444444  4433332  2333444556778999999886

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.72  E-value=0.048  Score=28.37  Aligned_cols=68  Identities=10%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          17 PVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      ....++++   +++..+++...++.+..++...................+++.+++.++++-...+.+..+
T Consensus       141 ~p~~i~~~---~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         141 DPDGVAVD---NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             SCCEEEEC---TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             Ccceeeec---CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEE
Confidence            34567777   688887777777778888876444333223344667889999999988887777766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.08  E-value=0.089  Score=27.59  Aligned_cols=71  Identities=14%  Similarity=0.189  Sum_probs=50.4

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec--CCCCeEEEEEECCCCCeEEEec-CCCeEEEcC
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE--GHKGCVWGVDINKDASKAASGA-ADFQAKALK   88 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~-~d~~i~~~~   88 (88)
                      +......+++.   ++++.+++....+.+.+|+.. +..+..+.  +.......+++.++++.+++-. .+..+.+++
T Consensus       155 ~~~~~~~i~~d---~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         155 HLEFPNGVVVN---DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             TCSSEEEEEEC---SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             cccccceeeec---cceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence            44556777787   688888888888889999864 66666663  3445678889999998776643 344566653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.72  E-value=0.13  Score=27.63  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=43.9

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEecCCCCeEEEEEECCCCCeEEEe
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFEGHKGCVWGVDINKDASKAASG   78 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   78 (88)
                      ..+..+.|.   ++|+++++-...+.|..++...+...............+++.+++.++++.
T Consensus        40 ~~lEG~~~D---~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~   99 (319)
T d2dg1a1          40 LQLEGLNFD---RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCY   99 (319)
T ss_dssp             CCEEEEEEC---TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEE
T ss_pred             cCcEeCEEC---CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEe
Confidence            345678898   789877777777888877776555444454555667889999999987764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.69  E-value=0.17  Score=28.91  Aligned_cols=78  Identities=13%  Similarity=-0.066  Sum_probs=49.8

Q ss_pred             eeEEecCCCCCEEEEEEEecCCCCcEEE-EEeCCCCEEEEECCCCC-----------EEEEecCCCCeEEEEEECCCCCe
Q psy6444           7 IPLTCSGHTRPVVHLAFSDITESGYFLI-SACKDGKPMLRQGDTGD-----------WIGTFEGHKGCVWGVDINKDASK   74 (88)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~   74 (88)
                      .+..+...+.+ ..+.++   ++|++++ ++..++.+.+||+.+-.           .+.......-...+.+|.+++..
T Consensus       250 v~~~IPvgksP-hGv~vS---PDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~  325 (441)
T d1qnia2         250 FTRYIPVPKNP-HGLNTS---PDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA  325 (441)
T ss_dssp             SEEEECCBSSC-CCEEEC---TTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred             eEEEEeCCCCc-cCceEC---CCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence            34444544443 457788   7998665 56778899999975311           11111111223456689999988


Q ss_pred             EEEecCCCeEEEcC
Q psy6444          75 AASGAADFQAKALK   88 (88)
Q Consensus        75 ~~~~~~d~~i~~~~   88 (88)
                      +.+...|..+..|+
T Consensus       326 yts~~~ds~v~kw~  339 (441)
T d1qnia2         326 YTTLFIDSQVCKWN  339 (441)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEcccccceEEEec
Confidence            88888999998885

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.46  E-value=0.12  Score=26.38  Aligned_cols=69  Identities=9%  Similarity=0.022  Sum_probs=42.4

Q ss_pred             cceeEEecCCCCCEEEEEEEecCCCCcEEEEEeC-CC-----CEEEEECCCCCEEEEecCC-------CCeEEEEEECCC
Q psy6444           5 RQIPLTCSGHTRPVVHLAFSDITESGYFLISACK-DG-----KPMLRQGDTGDWIGTFEGH-------KGCVWGVDINKD   71 (88)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~   71 (88)
                      +...+.|..+.+......|+   |+|+.++.... ++     .+.+++...+.. ..+...       ........|+|+
T Consensus        30 ~g~~~~Lt~~~~~~~~p~~S---PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~-~~lt~~~~~~~~~~~~~~~~~~spd  105 (281)
T d1k32a2          30 SGSTRKIVSNLGVINNARFF---PDGRKIAIRVMRGSSLNTADLYFYNGENGEI-KRITYFSGKSTGRRMFTDVAGFDPD  105 (281)
T ss_dssp             TCCEEEEECSSSEEEEEEEC---TTSSEEEEEEEESTTCCEEEEEEEETTTTEE-EECCCCCEEEETTEECSEEEEECTT
T ss_pred             CCCEEEEecCCCcccCEEEC---CCCCEEEEEEeeCCCCCceEEEEEEecCCce-EEeeecCCCccCccccccccccCCC
Confidence            34455666677778899999   89988875432 22     255556654543 222211       123356789999


Q ss_pred             CCeEEE
Q psy6444          72 ASKAAS   77 (88)
Q Consensus        72 ~~~~~~   77 (88)
                      +..++.
T Consensus       106 g~~l~~  111 (281)
T d1k32a2         106 GNLIIS  111 (281)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            998764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.42  E-value=0.14  Score=26.79  Aligned_cols=69  Identities=16%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEeC-CCCEEEEECCCCCEEEEecC--CCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          14 HTRPVVHLAFSDITESGYFLISACK-DGKPMLRQGDTGDWIGTFEG--HKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      .......+++.   ++|+.+++-.. +..+.+|+. +++.+..+..  .......+++.+++.++++ ..+..|++|
T Consensus       198 ~~~~P~giavD---~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~f  269 (279)
T d1q7fa_         198 ITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIY  269 (279)
T ss_dssp             TSCSEEEEEEC---TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEE
T ss_pred             cccCCcccccc---cCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEE
Confidence            33456778888   78887776543 446888874 4776665543  3346788899999986665 467888876

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=94.09  E-value=0.2  Score=27.36  Aligned_cols=69  Identities=13%  Similarity=0.038  Sum_probs=45.3

Q ss_pred             CEEEEEEEecCCCCcEEEEEeCC-CCEEEEECCC-CCEE--EEec--CCCCeEEEEEECCCCCeEE-EecCCCeEEEcC
Q psy6444          17 PVVHLAFSDITESGYFLISACKD-GKPMLRQGDT-GDWI--GTFE--GHKGCVWGVDINKDASKAA-SGAADFQAKALK   88 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~--~~~~~i~~~~~~~~~~~~~-~~~~d~~i~~~~   88 (88)
                      .+..+.|+   ++|++++.+... ..+.+|+... +...  ....  ......+++.|+|++.++. +...+++|.+|+
T Consensus       146 h~h~v~~s---PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         146 GIHGMVFD---PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             CEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cceEEEEC---CCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            46789999   799988877653 3577776543 3221  2221  2345778999999999775 445667777653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.87  E-value=0.18  Score=28.82  Aligned_cols=58  Identities=10%  Similarity=0.005  Sum_probs=41.6

Q ss_pred             CCCCEEEEEEEecCCCCcEEEEEe-CCCCEEEEECCCCCEEEEec-CCCCeEEEEEECCCCCe
Q psy6444          14 HTRPVVHLAFSDITESGYFLISAC-KDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASK   74 (88)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~   74 (88)
                      |..........   ++|++++... .+..+.++|+.+.+....+. ........++++|+++.
T Consensus        70 hhP~~s~t~gt---pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t  129 (441)
T d1qnia2          70 HHPHISMTDGR---YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT  129 (441)
T ss_dssp             CCCEEEEETTE---EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC
T ss_pred             cCCCcceeccc---CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE
Confidence            44445566667   6898886655 56679999998877655544 24567889999998884

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.68  E-value=0.22  Score=26.33  Aligned_cols=71  Identities=11%  Similarity=-0.026  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCC--CCEEEEe-cCCCCeEEEEEECCCCCeEEEecCCCeEEE
Q psy6444          13 GHTRPVVHLAFSDITESGYFLISACKDGKPMLRQGDT--GDWIGTF-EGHKGCVWGVDINKDASKAASGAADFQAKA   86 (88)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~   86 (88)
                      .....+..++++   ++|+.+++...++.+..++...  +...... .........+.+.+++..+++-+.++.+..
T Consensus        65 ~~~~~~~gla~~---~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~  138 (302)
T d2p4oa1          65 TVEGKVSGLAFT---SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL  138 (302)
T ss_dssp             ECSSEEEEEEEC---TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCCCCcceEEEc---CCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeecccccccee
Confidence            344567788999   7999888887777776665432  2221111 223455678888999988877666655543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.58  E-value=0.21  Score=25.82  Aligned_cols=68  Identities=9%  Similarity=0.076  Sum_probs=45.3

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCeEEEEEECCCCCeEEEecCCCeEEEc
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGCVWGVDINKDASKAASGAADFQAKAL   87 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~   87 (88)
                      .....+++.   ++|+++++....+.+..++..... ...+. ........+++.+++..+++-..+++|+.+
T Consensus       182 ~~p~gi~~d---~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         182 TAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CSEEEEEEC---TTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             CCCccceee---eeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            445677888   688888877777777777654332 22222 223456789999999888876677777654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=92.63  E-value=0.38  Score=26.23  Aligned_cols=68  Identities=12%  Similarity=-0.039  Sum_probs=40.7

Q ss_pred             EEEEEEEecCCCCcEEEEEeCC------CCEEEEECCCCCEEE------EecCCCCeEEEEEECC-CCCeEEEe-cCCCe
Q psy6444          18 VVHLAFSDITESGYFLISACKD------GKPMLRQGDTGDWIG------TFEGHKGCVWGVDINK-DASKAASG-AADFQ   83 (88)
Q Consensus        18 v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~-~~~~~~~~-~~d~~   83 (88)
                      ...+.++   ++|++++.+...      ..+..|++.....+.      .........+.++++| ++++++.+ ..++.
T Consensus       257 ~~~i~~s---pdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~  333 (365)
T d1jofa_         257 ADVCALT---FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EEEEEEC---TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             ccceEEC---CCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCe
Confidence            4567788   799988876431      126666654322111      1122234456688898 78877654 57788


Q ss_pred             EEEcC
Q psy6444          84 AKALK   88 (88)
Q Consensus        84 i~~~~   88 (88)
                      |.+|+
T Consensus       334 v~v~~  338 (365)
T d1jofa_         334 LEIYR  338 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88873

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.28  Score=27.88  Aligned_cols=60  Identities=15%  Similarity=0.075  Sum_probs=36.5

Q ss_pred             CCEEEEEEEecCCCCcEEEEEeCCCCEEEEECCCCCEEEEec-CCCCe-----------------EEEEEECCCCCeEEE
Q psy6444          16 RPVVHLAFSDITESGYFLISACKDGKPMLRQGDTGDWIGTFE-GHKGC-----------------VWGVDINKDASKAAS   77 (88)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------------i~~~~~~~~~~~~~~   77 (88)
                      ..+....|+   |+|+.++... ++.+.+.+...+..++... +..+.                 -.++-|||||..|+.
T Consensus       114 ~~l~~~~wS---PDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf  189 (465)
T d1xfda1         114 AKLQYAGWG---PKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY  189 (465)
T ss_dssp             CCCSBCCBC---SSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred             cccceeeec---cCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEE
Confidence            344557889   7998887765 4456666665444333322 11111                 245679999999986


Q ss_pred             ec
Q psy6444          78 GA   79 (88)
Q Consensus        78 ~~   79 (88)
                      ..
T Consensus       190 ~~  191 (465)
T d1xfda1         190 AA  191 (465)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.88  E-value=0.19  Score=28.58  Aligned_cols=58  Identities=10%  Similarity=0.003  Sum_probs=36.9

Q ss_pred             CEEEEEEEecCCCCcEEEEEeC---------CCCEEEEECCCCCEEEE--ecCCCCeEEEEEECCCCCeEEE
Q psy6444          17 PVVHLAFSDITESGYFLISACK---------DGKPMLRQGDTGDWIGT--FEGHKGCVWGVDINKDASKAAS   77 (88)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~   77 (88)
                      .+....++   ++++.++....         .+...++|+.++.....  .......+....|+|+|..++=
T Consensus        62 ~~~~~~~S---pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iaf  130 (465)
T d1xfda1          62 RAIRYEIS---PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIF  130 (465)
T ss_dssp             TCSEEEEC---TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred             ccceeEEC---CCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEE
Confidence            45567788   79987766543         34567788876653222  2223344556789999998764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.23  E-value=1  Score=23.94  Aligned_cols=67  Identities=9%  Similarity=-0.061  Sum_probs=41.8

Q ss_pred             EEEEEEecCCCCcEE-EEEeCCCCEEEEECCCC-CEEE-------EecCCCCeEEEEEECCCCCeEEEecCCCeEEEcC
Q psy6444          19 VHLAFSDITESGYFL-ISACKDGKPMLRQGDTG-DWIG-------TFEGHKGCVWGVDINKDASKAASGAADFQAKALK   88 (88)
Q Consensus        19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~d~~i~~~~   88 (88)
                      .-++|+   ++++.+ ++-...+.|..|++... ....       .........-.+++..+|+++++...++.|.++|
T Consensus       180 nGia~s---~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         180 NGIALS---TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeec---cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            347888   788755 45555677888876532 1111       1111223455788888998887777778887764