Psyllid ID: psy64

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILCVT
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccccccccHHHHHHHcccccccHHHHHccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccccEEEccccccccccHcccEcccccHHHHHHHHHHccccEccccccccEccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MKRQLKEHMavhttdrpfvcnmcpstfkLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILCVT
Flexible Loop (DISEMBL)
mkrqlkehmavhttdrpfvcnMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHmrihtgekkyIFIVVKKIIVVIYAkkfsldieilcvt
Low Complexity Region (SEG)
MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEkkyifivvkkiivviyakkfSLDIEILCVT
Disordered region (IsUnstruct)
**********VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILCV*
Disordered Region (DISOPRED)
**RQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILC**
Disordered Region (DISEMBL)
**********VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILCVT
Disordered Region (DISPRO)
****LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILCVT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKxxxxxxxxxxxxxxxxxxxxxVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILCVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q9H9D4	720	Zinc finger protein 408 O	yes	N/A	0.747	0.119	0.361	4e-13
Q5R5S6	660	Zinc finger protein 540 O	yes	N/A	0.739	0.128	0.373	2e-12
P10073	491	Zinc finger and SCAN doma	no	N/A	0.730	0.171	0.37	8e-12
Q8NDQ6	660	Zinc finger protein 540 O	no	N/A	0.739	0.128	0.363	8e-12
A6NJL1	495	Zinc finger and SCAN doma	no	N/A	0.730	0.169	0.37	1e-11
Q92010	448	Zinc finger protein 161 h	no	N/A	0.739	0.189	0.366	1e-11
Q80X44	710	Zinc finger and BTB domai	no	N/A	0.747	0.121	0.313	1e-11
Q08376	449	Zinc finger protein 161 O	no	N/A	0.739	0.189	0.366	1e-11
O43829	449	Zinc finger protein 161 h	no	N/A	0.739	0.189	0.366	1e-11
Q60636	856	PR domain zinc finger pro	no	N/A	0.721	0.096	0.343	2e-11

>sp|Q9H9D4|ZN408_HUMAN Zinc finger protein 408 OS=Homo sapiens GN=ZNF408 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 19/105 (18%)

Query: 2   KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH------------------LKM 43
           +R LKEH  VH+  RPF C+ C   F  +  LR H K H                     
Sbjct: 421 QRDLKEHQVVHSGARPFACDQCGKAFARRPSLRLHRKTHQVPAAPAPCPCPVCGRPLANQ 480

Query: 44  DTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
            +L NHM+ +H   + F C  C RAF    NL+ H+R+HTGE+ Y
Sbjct: 481 GSLRNHMR-LHTGEKPFLCPHCGRAFRQRGNLRGHLRLHTGERPY 524

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|Q5R5S6|ZN540_PONAB Zinc finger protein 540 OS=Pongo abelii GN=ZNF540 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 14/99 (14%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLE--------------NH 49
           QL  H  +HT  +P+ C  C  TF+L  +L +H + H      E              N 
Sbjct: 341 QLTRHQKIHTGVKPYECKECGKTFRLSFYLTEHRRTHAGKKPYECKECGKSFNVRGQLNR 400

Query: 50  MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
            KA+H  I+ F CKVC++AF    +L++H RIHTGEK Y
Sbjct: 401 HKAIHTGIKPFACKVCEKAFSYSGDLRVHSRIHTGEKPY 439

May act as a transcriptional repressor.

Pongo abelii (taxid: 9601)

>sp|P10073|ZSC22_HUMAN Zinc finger and SCAN domain-containing protein 22 OS=Homo sapiens GN=ZSCAN22 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 16/100 (16%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH-----LKMDT----------LEN 48
            L +H  VHT +RP+ C+ C   F    HL QH ++H      K D           L  
Sbjct: 366 HLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIR 425

Query: 49  HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           H++ +H   + +QCKVC +AF    +L  H RIHTGEK Y
Sbjct: 426 HLR-IHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPY 464

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8NDQ6|ZN540_HUMAN Zinc finger protein 540 OS=Homo sapiens GN=ZNF540 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 14/99 (14%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLE--------------NH 49
           QL  H  +HT  +P+ C  C  TF+L  +L +H + H      E              N 
Sbjct: 341 QLTRHQKIHTGVKPYECKECGKTFRLSFYLTEHRRTHAGKKPYECKECGKSFNVRGQLNR 400

Query: 50  MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
            K +H  I+ F CKVC++AF    +L++H RIHTGEK Y
Sbjct: 401 HKTIHTGIKPFACKVCEKAFSYSGDLRVHSRIHTGEKPY 439

May act as a transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|A6NJL1|ZSA5B_HUMAN Zinc finger and SCAN domain-containing protein 5B OS=Homo sapiens GN=ZSCAN5B PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 46/100 (46%), Gaps = 16/100 (16%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTLEN 48
           QL  H   HT DRPF C++C   F     LR H +VH                   TL+ 
Sbjct: 369 QLSIHRRSHTGDRPFQCDLCRKRFLQPSDLRVHQRVHTGERPYMCDVCQKRFAHESTLQG 428

Query: 49  HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           H K +H   R F+CK C + F    NL +H R H+GEK Y
Sbjct: 429 H-KRIHTGERPFKCKYCSKVFSHKGNLNVHQRTHSGEKPY 467

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q92010|ZF161_CHICK Zinc finger protein 161 homolog OS=Gallus gallus GN=ZFP161 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 16/101 (15%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH---------------LKMDTLEN 48
           +L++H  +HT DRPFVC MC   F  + HL++H K+H               ++   L+ 
Sbjct: 289 RLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYKPYSCEVCGKSFIRAPDLKK 348

Query: 49  HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI 89
           H + VH   R F C +CD+AF    +LK H R H GEK ++
Sbjct: 349 HER-VHSNERPFACHMCDKAFKHKSHLKDHERRHRGEKPFV 388

Transcriptional repressor of MYC and thymidine kinase promoters.

Gallus gallus (taxid: 9031)

>sp|Q80X44|ZBT24_MOUSE Zinc finger and BTB domain-containing protein 24 OS=Mus musculus GN=Zbtb24 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 16/102 (15%)

Query: 2   KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH---------------LKMDTL 46
           K  L EHM++H+  + F C+ C   F  K+ L+ HY+VH               + +  L
Sbjct: 361 KHSLLEHMSLHSGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECSHCHRKFMDVSQL 420

Query: 47  ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           + H++  H   + F C++C ++F    +L+ H+RIH GEK Y
Sbjct: 421 KKHLR-THTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPY 461

May be involved in BMP2-induced transcription.

Mus musculus (taxid: 10090)

>sp|Q08376|ZF161_MOUSE Zinc finger protein 161 OS=Mus musculus GN=Zfp161 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 16/101 (15%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH---------------LKMDTLEN 48
           +L++H  +HT DRPFVC MC   F  + HL++H K+H               ++   L+ 
Sbjct: 291 RLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYKPYSCEVCGKSFIRAPDLKK 350

Query: 49  HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI 89
           H + VH   R F C +CD+AF    +LK H R H GEK ++
Sbjct: 351 HER-VHSNERPFACHMCDKAFKHKSHLKDHERRHRGEKPFV 390

Transcriptional repressor of MYC and thymidine kinase promoters.

Mus musculus (taxid: 10090)

>sp|O43829|ZF161_HUMAN Zinc finger protein 161 homolog OS=Homo sapiens GN=ZFP161 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 16/101 (15%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH---------------LKMDTLEN 48
           +L++H  +HT DRPFVC MC   F  + HL++H K+H               ++   L+ 
Sbjct: 291 RLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYKPYSCEVCGKSFIRAPDLKK 350

Query: 49  HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI 89
           H + VH   R F C +CD+AF    +LK H R H GEK ++
Sbjct: 351 HER-VHSNERPFACHMCDKAFKHKSHLKDHERRHRGEKPFV 390

Transcriptional repressor of MYC and thymidine kinase promoters (By similarity). Transcriptional activator of the dopamine transporter (DAT), binding it's promoter at the consensus sequence 5'-CCTGCACAGTTCACGGA-3'.

Homo sapiens (taxid: 9606)

>sp|Q60636|PRDM1_MOUSE PR domain zinc finger protein 1 OS=Mus musculus GN=Prdm1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 5   LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTLENH 49
           LK H+ VH+ +RPF C  C   F    HL++HY VH                    L+ H
Sbjct: 621 LKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTH 680

Query: 50  MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           ++ +H   + +QCKVC   F    +LKLH R+HT E+ +
Sbjct: 681 LR-LHSGEKPYQCKVCPAKFTQFVHLKLHKRLHTRERPH 718

Transcriptional repressor that binds specifically to the PRDI element in the promoter of the beta-interferon gene. Drives the maturation of B-lymphocytes into Ig secreting cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
326665729	332	PREDICTED: zinc finger protein 235-like	0.808	0.280	0.376	8e-13
326666722	313	PREDICTED: zinc finger protein 135-like,	0.904	0.332	0.330	9e-13
160333524	360	zinc finger protein 502-like [Danio reri	0.756	0.241	0.388	2e-12
410931890	239	PREDICTED: zinc finger protein 91-like,	0.852	0.410	0.377	2e-12
444727221	1603	Zinc finger protein 161 like protein [Tu	0.739	0.053	0.366	2e-12
348523916	1111	PREDICTED: zinc finger protein 836-like,	0.808	0.083	0.357	2e-12
354469894	714	PREDICTED: zinc finger protein 408-like	0.747	0.120	0.373	2e-12
291245027	508	PREDICTED: novel KRAB box domain contain	0.739	0.167	0.431	2e-12
432950737	318	PREDICTED: zinc finger protein 25-like [	0.721	0.261	0.373	3e-12
410931141	193	PREDICTED: zinc finger protein 569-like,	0.678	0.404	0.413	3e-12

>gi|326665729|ref|XP_003198098.1| PREDICTED: zinc finger protein 235-like [Danio rerio]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 16/109 (14%)

Query: 2   KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK---------------MDTL 46
           K+ LK HM +HT ++PF C  C  TF    HL+ H +VH K                ++L
Sbjct: 37  KQSLKSHMMIHTGEKPFTCTQCGKTFLRASHLKSHLRVHTKEKPYPCSVCGKNFTRQESL 96

Query: 47  ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK 95
            NH K +H  + +++C  C++ F    NLK+H RIHTGEK YI  +  K
Sbjct: 97  RNHQK-IHTGVGEYRCFECNKTFCRAENLKIHERIHTGEKPYICSLCNK 144

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326666722|ref|XP_003198352.1| PREDICTED: zinc finger protein 135-like, partial [Danio rerio]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 20/124 (16%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTLEN 48
           QL +HM +HT +RPF C  C  +F    HL QH ++H                +   L +
Sbjct: 184 QLNQHMRIHTGERPFTCTQCGKSFSCSSHLNQHMRIHTGEKPFTCTQCGKSFSQSSHLNH 243

Query: 49  HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLD 108
           HM+ +H   + F C  C R+F    +L  HMRIHTGEK +      K     + +  SL+
Sbjct: 244 HMR-IHSGEKPFTCTQCGRSFSCSSHLNQHMRIHTGEKPFTCTQCGK----SFTRSSSLN 298

Query: 109 IEIL 112
           + IL
Sbjct: 299 LHIL 302

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|160333524|ref|NP_001103999.1| zinc finger protein 502-like [Danio rerio] gi|157422893|gb|AAI53401.1| Zgc:173517 protein [Danio rerio]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 16/103 (15%)

Query: 2   KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK---------------MDTL 46
           K+ LK HM +HT ++PF C  C  TF    HL+ H +VH K                 +L
Sbjct: 37  KQSLKSHMRIHTGEKPFTCTQCGKTFLRASHLKSHLRVHTKEKPYPCSVCGKSFKHQRSL 96

Query: 47  ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI 89
            NH K +H  +R+++C  C++ F    +LK+H RIHTGEK YI
Sbjct: 97  RNHQK-IHTGVREYKCFECEKTFCTAESLKIHKRIHTGEKPYI 138

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410931890|ref|XP_003979328.1| PREDICTED: zinc finger protein 91-like, partial [Takifugu rubripes]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 16/114 (14%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFK----LKKHLRQH-----------YKVHLKMDTLEN 48
           +LK HM VHT +RPFVC  C  TF     LK H+R H            K   +  +L+ 
Sbjct: 84  KLKVHMRVHTGERPFVCETCGKTFSINSTLKIHIRSHTGERPYLCKTCGKAFTEGSSLKR 143

Query: 49  HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYA 102
           HM+ +H   R F CK C + F D  +L +HMR+HTGE+ Y+     K    + A
Sbjct: 144 HMR-IHTGDRPFICKTCGKGFIDCSSLNIHMRVHTGERPYLCKTCGKTFKRLSA 196

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444727221|gb|ELW67724.1| Zinc finger protein 161 like protein [Tupaia chinensis]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 16/101 (15%)

Query: 4    QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH---------------LKMDTLEN 48
            +L++H  +HT DRPFVC MC   F  + HL++H K+H               ++   L+ 
Sbjct: 1445 RLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYKPYSCEVCGKSFIRAPDLKK 1504

Query: 49   HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI 89
            H + VH   R F C +CD+AF    +LK H R H GEK ++
Sbjct: 1505 HER-VHSNERPFACHMCDKAFKHKSHLKDHERRHRGEKPFV 1544

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348523916|ref|XP_003449469.1| PREDICTED: zinc finger protein 836-like, partial [Oreochromis niloticus]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 16/109 (14%)

Query: 2   KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTL 46
           KR LK HM +HT ++PF CN+C  +F+ +  + +H ++H                ++  L
Sbjct: 492 KRNLKAHMRIHTGEKPFSCNVCGKSFRHQYTIDRHMRIHTGEKPFGCSDCSKSFAQLGDL 551

Query: 47  ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK 95
             H KAVH  ++ F C VC + F    + K HMR+HTGEK +I  V  K
Sbjct: 552 NRH-KAVHTGLKPFSCNVCGKKFRQRNHFKRHMRVHTGEKPFICDVCGK 599

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354469894|ref|XP_003497347.1| PREDICTED: zinc finger protein 408-like [Cricetulus griseus] gi|344247828|gb|EGW03932.1| Zinc finger protein 408 [Cricetulus griseus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/107 (37%), Positives = 52/107 (48%), Gaps = 21/107 (19%)

Query: 2   KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMD----------------- 44
           +R LKEH  VH+  RPFVC  C   F  +  LR H K H   D                 
Sbjct: 414 RRDLKEHQVVHSGARPFVCEQCGKAFARRPSLRLHRKTHQMPDAPSPCLCPCPVCGRLLA 473

Query: 45  ---TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
              +L+NHM+ +H   + F C  C RAF    NL+ H+R+HTGE+ Y
Sbjct: 474 TQGSLQNHMR-LHTGEKPFLCPHCGRAFRQRGNLRGHLRLHTGERPY 519

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291245027|ref|XP_002742394.1| PREDICTED: novel KRAB box domain containing protein-like [Saccoglossus kowalevskii]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 1   MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF 60
            K  LK HM VHT ++P+ C  C   F  K +L+ H ++H     L++HM+ +H   + +
Sbjct: 273 WKGDLKTHMRVHTGEKPYECKGCNKCFTRKGYLKSHMRMHT--GYLKSHMR-IHTGEQPY 329

Query: 61  QCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           QCKVCD+ F +  NLK HM +HTGEK Y
Sbjct: 330 QCKVCDKCFINTSNLKRHMSVHTGEKPY 357

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|432950737|ref|XP_004084587.1| PREDICTED: zinc finger protein 25-like [Oryzias latipes]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 16/99 (16%)

Query: 5   LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTLENH 49
           LK HM +HT ++PF C  C  +F +  HL+QH + H                ++  L+ H
Sbjct: 124 LKTHMRIHTGEKPFSCKECKKSFNVLSHLKQHMRTHTGEKPFSCNECRKSFNQLSHLKTH 183

Query: 50  MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           M+ +H   + F CK C ++F+++ NLK HMR HTGEK Y
Sbjct: 184 MR-IHTGEKPFSCKECSKSFYEISNLKRHMRTHTGEKPY 221

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410931141|ref|XP_003978954.1| PREDICTED: zinc finger protein 569-like, partial [Takifugu rubripes]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 14/92 (15%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
           QLK H+ +HT +RP+VC  C  TF    HL    KVHL          +VH   R + CK
Sbjct: 66  QLKNHLRIHTGERPYVCQTCGKTFNRNDHL----KVHL----------SVHTGERPYVCK 111

Query: 64  VCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK 95
            C +AF D  +L +HMR+HTGE+ Y+  +  K
Sbjct: 112 TCGKAFIDSTSLNVHMRVHTGERPYLCKICGK 143

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
ZFIN|ZDB-GENE-071004-104	1011	zgc:173517 "zgc:173517" [Danio	0.721	0.082	0.373	2.6e-13
ZFIN|ZDB-GENE-070424-48	419	zgc:162971 "zgc:162971" [Danio	0.695	0.190	0.416	6.9e-13
ZFIN|ZDB-GENE-110411-58	251	si:ch73-57f22.2 "si:ch73-57f22	0.704	0.322	0.402	1.9e-12
ZFIN|ZDB-GENE-050208-385	350	si:dkey-1b17.8 "si:dkey-1b17.8	0.730	0.24	0.397	2.5e-12
ZFIN|ZDB-GENE-110914-58	293	si:ch211-271g18.4 "si:ch211-27	0.695	0.273	0.354	3.8e-12
ZFIN|ZDB-GENE-080219-10	269	zgc:174650 "zgc:174650" [Danio	0.695	0.297	0.354	4.3e-12
ZFIN|ZDB-GENE-050913-139	436	zgc:113381 "zgc:113381" [Danio	0.721	0.190	0.387	4.4e-12
ZFIN|ZDB-GENE-110914-42	272	si:dkey-191j3.3 "si:dkey-191j3	0.721	0.305	0.363	4.5e-12
ZFIN|ZDB-GENE-110913-89	400	si:dkey-23a23.3 "si:dkey-23a23	0.695	0.2	0.364	4.6e-12
ZFIN|ZDB-GENE-041111-134	366	im:7141269 "im:7141269" [Danio	0.617	0.193	0.388	6.2e-12

ZFIN|ZDB-GENE-071004-104 zgc:173517 "zgc:173517" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 37/99 (37%), Positives = 53/99 (53%)

Query:     2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK---------------MDTL 46
             K+ LK HM +HT ++PF C  C  TF    HL+ H +VH K                 +L
Sbjct:   324 KQSLKSHMRIHTGEKPFTCTQCGKTFLRASHLKSHLRVHTKEKPYPCSVCGKSFKHQRSL 383

Query:    47 ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
              NH K +H  +R+++C  C++ F    +LK+H RIHTGE
Sbjct:   384 RNHQK-IHTGVREYKCFECEKTFCTAESLKIHKRIHTGE 421

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-070424-48 zgc:162971 "zgc:162971" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 6.9e-13, P = 6.9e-13
 Identities = 40/96 (41%), Positives = 51/96 (53%)

Query:     5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH---------------LKMDTLENH 49
             LK+H+A HT  + F C+ C  TF    +LR H KVH               L++DTLE H
Sbjct:   294 LKDHLATHTGVKSFSCDQCDKTFVCASYLRAHRKVHIPVKPHVCSFCGKRFLRLDTLEIH 353

Query:    50 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
             M +VH  +R   C  C ++F   YNLK H R HTGE
Sbjct:   354 M-SVHTGVRPHVCSDCGKSFSTSYNLKTHQRTHTGE 388

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-110411-58 si:ch73-57f22.2 "si:ch73-57f22.2" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 39/97 (40%), Positives = 50/97 (51%)

Query:     2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTL 46
             K  LK HM++H+ +RP  C+ C  TF LK +LR H+KVH                + D L
Sbjct:   156 KGSLKTHMSIHSGERPHTCSQCGRTFNLKGNLRAHFKVHTGEKPFTCACCGKSFTRRDIL 215

Query:    47 ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 83
              NHM  VH +     C  C  +F    NLK+HMRIHT
Sbjct:   216 NNHM-TVHLRESCVTCHQCGMSFSKHANLKVHMRIHT 251

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-050208-385 si:dkey-1b17.8 "si:dkey-1b17.8" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 39/98 (39%), Positives = 55/98 (56%)

Query:     2 KRQLKEHMAVHTTDRPFVCNMCPSTF----KLKKHLRQHYKVHL-------KMDTLENHM 50
             K+ LK HM +HT ++P  C+ C  TF    +LKKHLR H K  L       K  +  +H+
Sbjct:   101 KQNLKFHMLIHTGEKPHGCDRCDKTFSRASQLKKHLRVHTKEMLCLCLLCGKSFSQRSHL 160

Query:    51 KA---VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
             KA   +H  +++  C  C++ FF   +LK H RIHTGE
Sbjct:   161 KAHQKIHTGVKEHACFECEKTFFTSGDLKKHQRIHTGE 198

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-110914-58 si:ch211-271g18.4 "si:ch211-271g18.4" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 34/96 (35%), Positives = 49/96 (51%)

Query:     5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH---------------LKMDTLENH 49
             L +HM +HT ++PF C  C  +F    +L QH K+H               ++  +L  H
Sbjct:   193 LNQHMRIHTGEKPFTCTQCGKSFSQSSNLNQHMKIHTGEKPFTCTQCGKSFIQSSSLNQH 252

Query:    50 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
             M+ +H   R F C  C+++F    NLK H RIHTGE
Sbjct:   253 MR-IHTGERPFTCSQCEKSFICSTNLKKHTRIHTGE 287

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080219-10 zgc:174650 "zgc:174650" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 34/96 (35%), Positives = 48/96 (50%)

Query:     5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK---------------MDTLENH 49
             LK HM +HT ++PF C  C  +F    HL QH ++H +                  L  H
Sbjct:   109 LKIHMMIHTGEKPFTCTHCGKSFSQSSHLNQHMRIHTREKPFTCTQCGKSFSRSSHLNEH 168

Query:    50 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
             M  +H + + F C  C ++F   + LK+HMRIHTGE
Sbjct:   169 MM-IHSRKKPFTCTQCGKSFGRNFGLKIHMRIHTGE 203

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050913-139 zgc:113381 "zgc:113381" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 38/98 (38%), Positives = 51/98 (52%)

Query:     2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMD--------------TLE 47
             K  L  HM +HT D+ F+C+ C S+FKLK++  QH K H +                T E
Sbjct:   230 KDHLDRHMRIHTKDKYFICDQCGSSFKLKENFDQHMKNHAEKSLICEQCGRSFFCEATYE 289

Query:    48 NHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
              HM+ VH   + + C  C ++F    NL  HMRIHTGE
Sbjct:   290 KHMR-VHTGEKPYSCTECGKSFSQKENLTSHMRIHTGE 326

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110914-42 si:dkey-191j3.3 "si:dkey-191j3.3" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 36/99 (36%), Positives = 49/99 (49%)

Query:     2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTL 46
             K  LK HM +HT ++PF C  C  +F L  HL QH ++H                +  +L
Sbjct:    78 KSNLKIHMMIHTGEKPFTCTQCGKSFSLSSHLTQHMRIHTGEKPFTCTQCGKSFSQSSSL 137

Query:    47 ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
              +HM  +H   + F C  C R+F    +L  HMRIHTGE
Sbjct:   138 NHHMM-IHTGEKPFTCTQCGRSFSCSSSLNKHMRIHTGE 175

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-89 si:dkey-23a23.3 "si:dkey-23a23.3" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 35/96 (36%), Positives = 49/96 (51%)

Query:     5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTLENH 49
             L +HM +HT ++PF CN C  +F    HL QH ++H                +  +L  H
Sbjct:   165 LNQHMRIHTGEKPFTCNQCGKSFNCLTHLNQHMRIHTGEKPFTCTQCGKSFRQSSSLNQH 224

Query:    50 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
             M+ +H   + F C  C R F  + NLK H+RIHTGE
Sbjct:   225 MR-IHTGEKPFTCTQCGRGFNCLSNLKQHLRIHTGE 259

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-041111-134 im:7141269 "im:7141269" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:     1 MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF 60
             +K+ L +HM +H+ ++ F C  C  TF LK+HL++H +VH              EK  +F
Sbjct:   207 IKQHLNDHMIIHSAEKAFECQQCGKTFFLKRHLKKHIRVHSG------------EK--NF 252

Query:    61 QCKVCDRAFFDVYNLKLHMRIHTGE 85
              C++C  +F  +Y+LK HMRIH+GE
Sbjct:   253 TCQLCGNSFTQMYSLKRHMRIHSGE 277

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG2462|consensus	279		99.92
KOG2462|consensus	279		99.91
KOG1074|consensus	958		99.79
KOG3623|consensus	1007		99.74
KOG3623|consensus	1007		99.74
KOG1074|consensus	958		99.73
KOG3608|consensus	467		99.68
KOG3576|consensus	267		99.66
KOG3576|consensus	267		99.58
PHA00733	128	hypothetical protein	99.39
PHA02768	55	hypothetical protein; Provisional	99.24
KOG3608|consensus	467		99.18
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.09
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.08
PHA02768	55	hypothetical protein; Provisional	99.01
PHA00733	128	hypothetical protein	99.0
KOG3993|consensus	500		98.89
PLN03086	567	PRLI-interacting factor K; Provisional	98.87
PHA00616	44	hypothetical protein	98.82
PLN03086	567	PRLI-interacting factor K; Provisional	98.76
PHA00732	79	hypothetical protein	98.61
PHA00732	79	hypothetical protein	98.5
KOG3993|consensus	500		98.47
PHA00616	44	hypothetical protein	98.46
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.33
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.32
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.2
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.16
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.14
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.97
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.92
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.85
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.83
PRK04860	160	hypothetical protein; Provisional	97.74
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.71
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.7
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.53
smart00355	26	ZnF_C2H2 zinc finger.	97.37
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.35
smart00355	26	ZnF_C2H2 zinc finger.	97.23
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.17
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.98
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.88
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.82
PRK04860	160	hypothetical protein; Provisional	96.69
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.57
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.17
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	96.12
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.64
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.4
KOG1146|consensus	1406		95.15
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.98
COG5048	467	FOG: Zn-finger [General function prediction only]	94.89
COG1592	166	Rubrerythrin [Energy production and conversion]	94.47
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	94.24
KOG2893|consensus	341		94.24
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	93.99
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	93.97
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.73
smart00531	147	TFIIE Transcription initiation factor IIE.	93.71
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	93.69
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.48
KOG1146|consensus	1406		93.27
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	93.08
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	92.95
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	92.88
KOG2893|consensus	341		92.68
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	92.58
COG4049	65	Uncharacterized protein containing archaeal-type C	92.5
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	92.45
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	92.25
KOG2231|consensus	669		91.82
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	91.8
smart00531	147	TFIIE Transcription initiation factor IIE.	91.7
KOG2186|consensus	276		91.67
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	91.22
PRK06266	178	transcription initiation factor E subunit alpha; V	91.04
KOG2186|consensus	276		90.95
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	90.71
KOG2593|consensus	436		90.37
COG5048	467	FOG: Zn-finger [General function prediction only]	90.04
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	90.02
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	89.81
COG4049	65	Uncharacterized protein containing archaeal-type C	89.39
PRK06266	178	transcription initiation factor E subunit alpha; V	89.31
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	89.22
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	88.92
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	88.28
PRK09678	72	DNA-binding transcriptional regulator; Provisional	86.45
KOG2636|consensus	497		85.41
COG3357	97	Predicted transcriptional regulator containing an	85.18
PTZ00255	90	60S ribosomal protein L37a; Provisional	85.16
COG5236	493	Uncharacterized conserved protein, contains RING Z	85.02
PF14353	128	CpXC: CpXC protein	84.95
PHA00626	59	hypothetical protein	84.83
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	84.51
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	84.5
PRK00432	50	30S ribosomal protein S27ae; Validated	84.03
KOG2785|consensus	390		84.02
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	83.49
PF13451	49	zf-trcl: Probable zinc-binding domain	83.36
KOG2593|consensus	436		82.33
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	82.17
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	81.71
COG5236	493	Uncharacterized conserved protein, contains RING Z	80.52
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	80.45
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	80.35
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	80.2

>KOG2462|consensus

Probab=99.92  E-value=1.1e-25  Score=139.57  Aligned_cols=106  Identities=25%  Similarity=0.427  Sum_probs=85.7

Q ss_pred             HHHHHHHHhcCC---CCCeecCCChhhccChhhHHHHHHHhc------------Chh-HHHHHHHHhhcCCCceeccccc
Q psy64             3 RQLKEHMAVHTT---DRPFVCNMCPSTFKLKKHLRQHYKVHL------------KMD-TLENHMKAVHEKIRDFQCKVCD   66 (115)
Q Consensus         3 ~~l~~h~~~h~~---~~~~~C~~C~~~~~~~~~l~~h~~~h~------------~~~-~l~~h~~~~h~~~~~~~C~~c~   66 (115)
                      ++|.+|.+.|..   .+.+.|++||+.|.+...|..|+++|.            .+. .|+-|+| +|+|+|||.|+.|+
T Consensus       144 snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiR-THTGEKPF~C~hC~  222 (279)
T KOG2462|consen  144 SNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIR-THTGEKPFSCPHCG  222 (279)
T ss_pred             cccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccc-cccCCCCccCCccc
Confidence            456677776632   455777777777777777777777775            111 3556666 78999999999999


Q ss_pred             ccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCcc
Q psy64            67 RAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDI  109 (115)
Q Consensus        67 ~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~  109 (115)
                      ++|.+.++|..|+++|.+.|+|.|..|+|+|...+-|..|..+
T Consensus       223 kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  223 KAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             chhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999998753

>KOG2462|consensus

Probab=99.91  E-value=1.3e-25  Score=139.28  Aligned_cols=96  Identities=23%  Similarity=0.421  Sum_probs=88.9

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhc------------------ChhHHHHHHHHhhcCCCceecccccccccChhhHH
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHL------------------KMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLK   76 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~------------------~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~   76 (115)
                      ...|+|++||+.|...++|.+|++.|.                  .+..|++|++ +|  ..+.+|..||+.|.+...|+
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHir-TH--~l~c~C~iCGKaFSRPWLLQ  204 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIR-TH--TLPCECGICGKAFSRPWLLQ  204 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhh-cc--CCCcccccccccccchHHhh
Confidence            345999999999999999999999885                  6788999999 44  47899999999999999999


Q ss_pred             HHHHHhcCCCceeEEeecceehhhhhhccCCcccccc
Q psy64            77 LHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILC  113 (115)
Q Consensus        77 ~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~~  113 (115)
                      -|+++|+|||||.|.+|++.|.+++.|+.|+.+|..+
T Consensus       205 GHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~  241 (279)
T KOG2462|consen  205 GHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV  241 (279)
T ss_pred             cccccccCCCCccCCcccchhcchHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999999764

>KOG1074|consensus

Probab=99.79  E-value=1.2e-20  Score=131.19  Aligned_cols=39  Identities=38%  Similarity=0.801  Sum_probs=35.5

Q ss_pred             HHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhc
Q psy64             3 RQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus         3 ~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      +.|+.|++.|+|++||+|++||..|..+.+|..|...|.
T Consensus       367 SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  367 SALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             hhhhhhhhccCCCCCeeecccccccccccceeeeeeecc
Confidence            678999999999999999999999999999999876553

>KOG3623|consensus

Probab=99.74  E-value=3.7e-19  Score=122.64  Aligned_cols=81  Identities=26%  Similarity=0.462  Sum_probs=75.9

Q ss_pred             CCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            14 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        14 ~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .+-+|.|..|+++|...++|.+|..              -|+|++||+|.+|.++|..+-.|..|.+.|.|||||.|+.|
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKY--------------EHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKC  956 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKY--------------EHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKC  956 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhh--------------hhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhh
Confidence            3457999999999999999999987              45899999999999999999999999999999999999999


Q ss_pred             cceehhhhhhccCCc
Q psy64            94 KKIIVVIYAKKFSLD  108 (115)
Q Consensus        94 ~~~~~~~~~~~~h~~  108 (115)
                      +|.|..+++...|+.
T Consensus       957 lKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  957 LKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhhcccccchHhhhc
Confidence            999999999998875

>KOG3623|consensus

Probab=99.74  E-value=1.1e-18  Score=120.46  Aligned_cols=106  Identities=28%  Similarity=0.467  Sum_probs=84.9

Q ss_pred             HHHHHHHHh-c-CCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHH
Q psy64             3 RQLKEHMAV-H-TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR   80 (115)
Q Consensus         3 ~~l~~h~~~-h-~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~   80 (115)
                      ..|+.|+.- | .++..|.|..|.++|.+.+.|.+|+..|.....-..+.- .....+.|+|.+||++|..+-.|+.|++
T Consensus       224 tslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~slt-qsa~lRKFKCtECgKAFKfKHHLKEHlR  302 (1007)
T KOG3623|consen  224 TSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLT-QSALLRKFKCTECGKAFKFKHHLKEHLR  302 (1007)
T ss_pred             HHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCccccccc-chhhhccccccccchhhhhHHHHHhhhe
Confidence            356778773 4 345569999999999999999999998852111111111 2234567999999999999999999999


Q ss_pred             HhcCCCceeEEeecceehhhhhhccCCcc
Q psy64            81 IHTGEKKYIFIVVKKIIVVIYAKKFSLDI  109 (115)
Q Consensus        81 ~h~~~~~~~C~~C~~~~~~~~~~~~h~~~  109 (115)
                      +|.|||||.|+.|+|.|..++++..|+.+
T Consensus       303 IHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  303 IHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             eecCCCCcCCcccccccccCCcccccccc
Confidence            99999999999999999999999999863

>KOG1074|consensus

Probab=99.73  E-value=6.6e-19  Score=122.66  Aligned_cols=54  Identities=24%  Similarity=0.455  Sum_probs=51.1

Q ss_pred             eecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCcccccc
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILC  113 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~~  113 (115)
                      ..|..||+.|..++.|+.|+++|+++|||.|..|++.|..+..|..|+..|.-+
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~  933 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWV  933 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhcccccc
Confidence            569999999999999999999999999999999999999999999999988643

>KOG3608|consensus

Probab=99.68  E-value=5.2e-17  Score=104.43  Aligned_cols=109  Identities=21%  Similarity=0.395  Sum_probs=86.0

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhc----------------------------------------
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL----------------------------------------   41 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~----------------------------------------   41 (115)
                      |..|.+|++.|++++...|+.||.-|+..+.|-.|.+-.+                                        
T Consensus       192 k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdm  271 (467)
T KOG3608|consen  192 KYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDM  271 (467)
T ss_pred             HHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhccccccccc
Confidence            5789999999999999999999999999999888875432                                        


Q ss_pred             ---ChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe--ecceehhhhhhccCCcccc
Q psy64            42 ---KMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV--VKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        42 ---~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~~~~h~~~h~  111 (115)
                         ..+.|..|++..|..++||+|+.|.+.+.+.+.|+.|...|+ +..|.|..  |.+.+.....+.+|++.+.
T Consensus       272 tc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  272 TCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             CCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence               567788888888888888888888888888888888888776 55666654  6666666666666665443

>KOG3576|consensus

Probab=99.66  E-value=5.6e-18  Score=101.66  Aligned_cols=81  Identities=28%  Similarity=0.613  Sum_probs=61.6

Q ss_pred             CCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            14 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        14 ~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      +...|.|.+|+++|....-|.+|++-|              ...+.+.|.-||+.|...-.|++|.++|+|.+||+|+.|
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch--------------~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c  179 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCH--------------SDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLC  179 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhc--------------cHHHHHHHhhccCcccchhhhhhhhccccCccccchhhh
Confidence            456699999999999999999998855              455666777777777777777777777777777777777


Q ss_pred             cceehhhhhhccCCc
Q psy64            94 KKIIVVIYAKKFSLD  108 (115)
Q Consensus        94 ~~~~~~~~~~~~h~~  108 (115)
                      ++.|+++.+|..|++
T Consensus       180 ~kaftqrcsleshl~  194 (267)
T KOG3576|consen  180 EKAFTQRCSLESHLK  194 (267)
T ss_pred             hHHHHhhccHHHHHH
Confidence            777777777777665

>KOG3576|consensus

Probab=99.58  E-value=2.5e-16  Score=94.60  Aligned_cols=95  Identities=21%  Similarity=0.430  Sum_probs=83.8

Q ss_pred             HHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHh
Q psy64             3 RQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus         3 ~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      .-|.+|+..|...+.+-|..||+.|.....|.+|+++              |+|.+||+|..|+++|...-.|..|.+.-
T Consensus       131 Rmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rt--------------htgvrpykc~~c~kaftqrcsleshl~kv  196 (267)
T KOG3576|consen  131 RMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRT--------------HTGVRPYKCSLCEKAFTQRCSLESHLKKV  196 (267)
T ss_pred             HHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhcc--------------ccCccccchhhhhHHHHhhccHHHHHHHH
Confidence            4578999999999999999999999999999999984              58999999999999999999999997643


Q ss_pred             c-----------CCCceeEEeecceehhhhhhccCCcccc
Q psy64            83 T-----------GEKKYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        83 ~-----------~~~~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      .           .+|.|+|+.||++-........|++.|+
T Consensus       197 hgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  197 HGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             cCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence            3           4578999999999999888888888765

>PHA00733 hypothetical protein

Probab=99.39  E-value=7e-14  Score=80.06  Aligned_cols=89  Identities=13%  Similarity=0.141  Sum_probs=71.2

Q ss_pred             CCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        13 ~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      ...+++.|.+|...|.....|..+..       |..++  .+.+.+||.|+.||+.|.....|..|++.+  +.+|.|++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------l~~~~--~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~  104 (128)
T PHA00733         36 PEQKRLIRAVVKTLIYNPQLLDESSY-------LYKLL--TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPV  104 (128)
T ss_pred             hhhhhHHHHHHhhhccChhhhcchHH-------HHhhc--ccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCC
Confidence            34577889999999988877776632       22222  234588999999999999999999999876  46899999


Q ss_pred             ecceehhhhhhccCCccccc
Q psy64            93 VKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        93 C~~~~~~~~~~~~h~~~h~~  112 (115)
                      |++.|.....|..|+...+.
T Consensus       105 CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        105 CGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCHHHHHHHHHHhcC
Confidence            99999999999999876543

>PHA02768 hypothetical protein; Provisional

Probab=99.24  E-value=2.7e-12  Score=62.17  Aligned_cols=46  Identities=15%  Similarity=0.310  Sum_probs=41.9

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhcc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKF  105 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~  105 (115)
                      ..|+|+.||+.|.....|..|+++|+  +||.|..|++.|...+.|..
T Consensus         4 ~~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          4 LGYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             cccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeEE
Confidence            35899999999999999999999998  79999999999998877754

>KOG3608|consensus

Probab=99.18  E-value=3.7e-11  Score=77.95  Aligned_cols=92  Identities=21%  Similarity=0.393  Sum_probs=70.5

Q ss_pred             hHHHHHHHHh-cCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc--ccccccChhhHHHH
Q psy64             2 KRQLKEHMAV-HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLH   78 (115)
Q Consensus         2 k~~l~~h~~~-h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~--c~~~~~~~~~l~~h   78 (115)
                      .++|..|++. |...+||+|..|++.+...+.|..|...|              . +..|.|..  |...+.+...+..|
T Consensus       276 ~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~H--------------S-~~~y~C~h~~C~~s~r~~~q~~~H  340 (467)
T KOG3608|consen  276 ASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVH--------------S-KTVYQCEHPDCHYSVRTYTQMRRH  340 (467)
T ss_pred             hHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhc--------------c-ccceecCCCCCcHHHHHHHHHHHH
Confidence            4678888884 78889999999999999999999998866              2 45677766  77777777777777


Q ss_pred             HHHhc-CCC--ceeEEeecceehhhhhhccCCc
Q psy64            79 MRIHT-GEK--KYIFIVVKKIIVVIYAKKFSLD  108 (115)
Q Consensus        79 ~~~h~-~~~--~~~C~~C~~~~~~~~~~~~h~~  108 (115)
                      ..-+. |..  +|.|..|.+.|+.-.+|..|+.
T Consensus       341 ~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~  373 (467)
T KOG3608|consen  341 FLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM  373 (467)
T ss_pred             HHHhccCCCCCceeeecchhhhccchhHHHHHH
Confidence            66544 433  4788888888888777777765

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.09  E-value=8.5e-11  Score=49.06  Aligned_cols=25  Identities=48%  Similarity=0.607  Sum_probs=19.3

Q ss_pred             hHHHHHHHhcCCCceeEEeecceeh
Q psy64            74 NLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        74 ~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      +|..|++.|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3667888888888888888888775

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.08  E-value=8.1e-11  Score=49.13  Aligned_cols=26  Identities=35%  Similarity=0.862  Sum_probs=23.9

Q ss_pred             HHHHHHHhcCCCCCeecCCChhhccC
Q psy64             4 QLKEHMAVHTTDRPFVCNMCPSTFKL   29 (115)
Q Consensus         4 ~l~~h~~~h~~~~~~~C~~C~~~~~~   29 (115)
                      +|..|++.|++++||.|+.|+++|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58899999999999999999999863

...

>PHA02768 hypothetical protein; Provisional

Probab=99.01  E-value=1.5e-10  Score=56.07  Aligned_cols=43  Identities=16%  Similarity=0.456  Sum_probs=37.9

Q ss_pred             CeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhH
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL   75 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l   75 (115)
                      -|.|++||+.|...++|..|++.|              .  ++++|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H--------------~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKH--------------N--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhc--------------C--CcccCCcccceeccccee
Confidence            478999999999999999999966              3  689999999999977655

>PHA00733 hypothetical protein

Probab=99.00  E-value=9e-10  Score=63.20  Aligned_cols=62  Identities=23%  Similarity=0.435  Sum_probs=50.9

Q ss_pred             HHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhc
Q psy64             5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus         5 l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      |..|+..+ +.+||.|+.||+.|.....|..|++.+                ..+|.|..|++.|.....|..|+....
T Consensus        62 l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h----------------~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         62 LYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYT----------------EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             HHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcC----------------CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            45554444 578999999999999999999887633                346899999999999999999977654

>KOG3993|consensus

Probab=98.89  E-value=5e-10  Score=74.15  Aligned_cols=78  Identities=19%  Similarity=0.339  Sum_probs=55.2

Q ss_pred             HHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHH------------------HHHH-HhhcCCCceecccc
Q psy64             5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLE------------------NHMK-AVHEKIRDFQCKVC   65 (115)
Q Consensus         5 l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~------------------~h~~-~~h~~~~~~~C~~c   65 (115)
                      |.+|.........|+|++|+|.|.-..+|..|.++|.-+....                  +-.+ .....+..|.|..|
T Consensus       283 LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C  362 (500)
T KOG3993|consen  283 LAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTC  362 (500)
T ss_pred             HhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHh
Confidence            4555555555567999999999999999999999996222211                  0000 00123447899999


Q ss_pred             cccccChhhHHHHHHHh
Q psy64            66 DRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        66 ~~~~~~~~~l~~h~~~h   82 (115)
                      ++.|.+..+|..|+-+|
T Consensus       363 ~KkFrRqAYLrKHqlth  379 (500)
T KOG3993|consen  363 GKKFRRQAYLRKHQLTH  379 (500)
T ss_pred             hhhhHHHHHHHHhHHhh
Confidence            99999999999997666

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.87  E-value=6.4e-09  Score=72.11  Aligned_cols=83  Identities=16%  Similarity=0.342  Sum_probs=47.9

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhc-----------ChhHHHHHHHHhhcCCCceecccccccccC----------hh
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHL-----------KMDTLENHMKAVHEKIRDFQCKVCDRAFFD----------VY   73 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~-----------~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~----------~~   73 (115)
                      ++.+.|+.|++.|. ...|..|+..++           .+..|..|.. .+...+++.|+.|+..+..          ..
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~-thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s  528 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQA-STCPLRLITCRFCGDMVQAGGSAMDVRDRLR  528 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcCCCccCCCCCCcchhHHHhhhh-ccCCCCceeCCCCCCccccCccccchhhhhh
Confidence            34455666666553 344555554321           1223333433 4566777788888777642          23


Q ss_pred             hHHHHHHHhcCCCceeEEeecceehhh
Q psy64            74 NLKLHMRIHTGEKKYIFIVVKKIIVVI  100 (115)
Q Consensus        74 ~l~~h~~~h~~~~~~~C~~C~~~~~~~  100 (115)
                      .|..|.... |.+++.|..|++.+..+
T Consensus       529 ~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr  554 (567)
T PLN03086        529 GMSEHESIC-GSRTAPCDSCGRSVMLK  554 (567)
T ss_pred             hHHHHHHhc-CCcceEccccCCeeeeh
Confidence            677776664 77778887787776654

>PHA00616 hypothetical protein

Probab=98.82  E-value=2.6e-09  Score=49.44  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             ceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      ||+|+.||+.|...+.+..|++.+++++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899999999999999999999999999999874

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.76  E-value=8e-09  Score=71.64  Aligned_cols=101  Identities=17%  Similarity=0.310  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCCCCeecCC--ChhhccChhhHHHHHHH-h----cChhHHHHHHHHhhcCCCceecccccccccChhhH
Q psy64             3 RQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKV-H----LKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL   75 (115)
Q Consensus         3 ~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~-h----~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l   75 (115)
                      .+|..|.... ....-.|+.  ||..|.. ..+..|..- +    .....+..|+...|   +++.|+ ||..+ ....|
T Consensus       420 ~~l~lHe~~C-~r~~V~Cp~~~Cg~v~~r-~el~~H~~C~~Cgk~f~~s~LekH~~~~H---kpv~Cp-Cg~~~-~R~~L  492 (567)
T PLN03086        420 RSIALHEAYC-SRHNVVCPHDGCGIVLRV-EEAKNHVHCEKCGQAFQQGEMEKHMKVFH---EPLQCP-CGVVL-EKEQM  492 (567)
T ss_pred             hHHHHHHhhC-CCcceeCCcccccceeec-cccccCccCCCCCCccchHHHHHHHHhcC---CCccCC-CCCCc-chhHH
Confidence            3455565432 223445874  9988853 345555410 0    14567889988433   789999 99755 66899


Q ss_pred             HHHHHHhcCCCceeEEeecceehh----------hhhhccCCccc
Q psy64            76 KLHMRIHTGEKKYIFIVVKKIIVV----------IYAKKFSLDIE  110 (115)
Q Consensus        76 ~~h~~~h~~~~~~~C~~C~~~~~~----------~~~~~~h~~~h  110 (115)
                      ..|...+..++|+.|..|++.+..          ...|..|..+.
T Consensus       493 ~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        493 VQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             HhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc
Confidence            999999999999999999999941          34677776543

>PHA00732 hypothetical protein

Probab=98.61  E-value=2.2e-08  Score=52.65  Aligned_cols=45  Identities=24%  Similarity=0.304  Sum_probs=38.0

Q ss_pred             ceecccccccccChhhHHHHHHH-hcCCCceeEEeecceehhhhhhccCCcc
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRI-HTGEKKYIFIVVKKIIVVIYAKKFSLDI  109 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~-h~~~~~~~C~~C~~~~~~~~~~~~h~~~  109 (115)
                      ||.|..||+.|.....|..|++. |.   ++.|+.|++.|.   .+..|+++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            58999999999999999999984 55   468999999998   46677654

>PHA00732 hypothetical protein

Probab=98.50  E-value=9.5e-08  Score=50.29  Aligned_cols=48  Identities=27%  Similarity=0.494  Sum_probs=38.2

Q ss_pred             CeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhc
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      ||.|+.|++.|.....|..|++.+             |.   ++.|+.||+.|.   .+..|..+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~-------------H~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRN-------------HT---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcc-------------cC---CCccCCCCCEeC---ChhhhhcccC
Confidence            689999999999999999998732             12   358999999998   4667776554

>KOG3993|consensus

Probab=98.47  E-value=1.2e-08  Score=67.75  Aligned_cols=82  Identities=18%  Similarity=0.241  Sum_probs=66.9

Q ss_pred             eecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhc--------------
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT--------------   83 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~--------------   83 (115)
                      |.|..|-..|.+...|..|.-.-              .---.|+|++|++.|.-..+|.+|.+=|.              
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~R--------------IV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k  333 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPR--------------IVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPK  333 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCe--------------eEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChh
Confidence            78999999999998888885321              11235999999999999999999977551              


Q ss_pred             -------------------CCCceeEEeecceehhhhhhccCCcccccc
Q psy64            84 -------------------GEKKYIFIVVKKIIVVIYAKKFSLDIEILC  113 (115)
Q Consensus        84 -------------------~~~~~~C~~C~~~~~~~~~~~~h~~~h~~~  113 (115)
                                         .+..|.|..|+|+|....-|..|..+|++.
T Consensus       334 ~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  334 QAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             hhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence                               123589999999999999999999888764

>PHA00616 hypothetical protein

Probab=98.46  E-value=1.3e-07  Score=43.83  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=29.4

Q ss_pred             CeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      ||+|+.||+.|.....|..|++.+              .+++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~--------------hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSV--------------HKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHh--------------cCCCccceeE
Confidence            689999999999999999999854              6778888765

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.33  E-value=2.3e-07  Score=59.94  Aligned_cols=53  Identities=25%  Similarity=0.432  Sum_probs=44.4

Q ss_pred             CCCceeccc--ccccccChhhHHHHHHH-h------------------cCCCceeEEeecceehhhhhhccCCc
Q psy64            56 KIRDFQCKV--CDRAFFDVYNLKLHMRI-H------------------TGEKKYIFIVVKKIIVVIYAKKFSLD  108 (115)
Q Consensus        56 ~~~~~~C~~--c~~~~~~~~~l~~h~~~-h------------------~~~~~~~C~~C~~~~~~~~~~~~h~~  108 (115)
                      +.|||+|+.  |.+.|.....|+-|+.- |                  ..+|||+|++|+|.+.+.-.|.-|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            359999988  99999999999888542 2                  13599999999999999999988875

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.32  E-value=1.6e-07  Score=45.99  Aligned_cols=50  Identities=20%  Similarity=0.279  Sum_probs=38.6

Q ss_pred             ceecccccccccChhhHHHHHHH-hcCC-CceeEEeecceehhhhhhccCCcccc
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRI-HTGE-KKYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~-h~~~-~~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      .|.||.|++ ......|..|... |..+ +.++|++|...+..  +|..|+.+++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~--~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVTD--NLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhhh--HHHHHHHHhc
Confidence            489999999 5667789999665 5443 57999999986553  7888887665

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.20  E-value=1.3e-06  Score=35.03  Aligned_cols=23  Identities=30%  Similarity=0.843  Sum_probs=20.9

Q ss_pred             eecCCChhhccChhhHHHHHHHh
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      |.|+.|++.|..+..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.16  E-value=4.5e-06  Score=40.82  Aligned_cols=51  Identities=22%  Similarity=0.435  Sum_probs=37.3

Q ss_pred             CeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcC-CCceecccccccccChhhHHHHHHHhc
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEK-IRDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~-~~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      .|.|++|++ ..+...|..|....             |.. .+.+.||+|...+.  .+|..|+..+.
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~-------------H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDE-------------HRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhH-------------CcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            488999999 56677888887643             333 45789999997544  47888877654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.14  E-value=2.3e-06  Score=34.33  Aligned_cols=22  Identities=41%  Similarity=0.886  Sum_probs=13.6

Q ss_pred             eecccccccccChhhHHHHHHH
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      |+|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.97  E-value=1.3e-06  Score=36.52  Aligned_cols=25  Identities=8%  Similarity=-0.121  Sum_probs=17.3

Q ss_pred             ceeEEeecceehhhhhhccCCcccc
Q psy64            87 KYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      ||.|+.|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4677777777777777777776653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.92  E-value=1.2e-05  Score=32.27  Aligned_cols=23  Identities=43%  Similarity=0.974  Sum_probs=19.2

Q ss_pred             eecCCChhhccChhhHHHHHHHh
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      |.|++|+..|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999998865

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.85  E-value=7.9e-06  Score=34.04  Aligned_cols=24  Identities=42%  Similarity=0.848  Sum_probs=22.2

Q ss_pred             CeecCCChhhccChhhHHHHHHHh
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ||.|..|++.|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            689999999999999999999765

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.83  E-value=3.8e-06  Score=54.46  Aligned_cols=65  Identities=23%  Similarity=0.557  Sum_probs=46.6

Q ss_pred             CCCeecCC--ChhhccChhhHHHHHHHhcChhH-----HHHHHHHhhcCCCceecccccccccChhhHHHHH
Q psy64            15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDT-----LENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM   79 (115)
Q Consensus        15 ~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~-----l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~   79 (115)
                      ++||+|++  |.++|+..-.|+-|+..=+..+.     -...+......+|||.|+.|++.|.....|+-|.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            59999998  99999999999999753221000     0011111346789999999999999998887664

>PRK04860 hypothetical protein; Provisional

Probab=97.74  E-value=1.7e-05  Score=47.26  Aligned_cols=41  Identities=22%  Similarity=0.402  Sum_probs=35.0

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYA  102 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~  102 (115)
                      -+|.|. |+.   ....+..|.++++++++|.|..|+..|.....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~~  158 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKGE  158 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEecc
Confidence            368998 987   66778899999999999999999999876543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.71  E-value=3.9e-05  Score=30.64  Aligned_cols=23  Identities=43%  Similarity=0.959  Sum_probs=11.7

Q ss_pred             eecccccccccChhhHHHHHHHh
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      |.|+.|++.|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45555666666655555555543

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.70  E-value=4.2e-05  Score=41.69  Aligned_cols=62  Identities=27%  Similarity=0.515  Sum_probs=17.1

Q ss_pred             ecCCChhhccChhhHHHHHHHhcCh-----------hHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHh
Q psy64            19 VCNMCPSTFKLKKHLRQHYKVHLKM-----------DTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        19 ~C~~C~~~~~~~~~l~~h~~~h~~~-----------~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      +|..|+..|.....|..|+...+..           ..+....+.  .-...+.|..|++.|.....|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRK--KVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             --------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Ccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            4899999999999999998654421           111111110  1112467777777777777777777754

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.53  E-value=7e-05  Score=35.60  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=22.2

Q ss_pred             cCCCceecccccccccChhhHHHHHHHhcCCCc
Q psy64            55 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus        55 ~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      ..+.|-.|++|+..+....+|.+|+....+.||
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            456778899999888888889888888877766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.37  E-value=0.00019  Score=28.99  Aligned_cols=23  Identities=35%  Similarity=0.800  Sum_probs=20.5

Q ss_pred             eecCCChhhccChhhHHHHHHHh
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            57999999999999999998755

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.35  E-value=2.8e-05  Score=42.38  Aligned_cols=24  Identities=8%  Similarity=-0.078  Sum_probs=21.2

Q ss_pred             ceeEEeecceehhhhhhccCCccc
Q psy64            87 KYIFIVVKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~~~~h~~~h  110 (115)
                      .+.|..|++.|.+...|..|++.+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            689999999999999999999864

>smart00355 ZnF_C2H2 zinc finger

Probab=97.23  E-value=0.00032  Score=28.26  Aligned_cols=23  Identities=39%  Similarity=0.798  Sum_probs=14.4

Q ss_pred             eecccccccccChhhHHHHHHHh
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      |.|..|++.|.....+..|+..|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            35666666666666666666544

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.17  E-value=5.4e-05  Score=30.82  Aligned_cols=22  Identities=9%  Similarity=0.015  Sum_probs=11.9

Q ss_pred             eeEEeecceehhhhhhccCCcc
Q psy64            88 YIFIVVKKIIVVIYAKKFSLDI  109 (115)
Q Consensus        88 ~~C~~C~~~~~~~~~~~~h~~~  109 (115)
                      |.|.+|.+.|.+...+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3455555555555555555543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.98  E-value=0.00019  Score=29.84  Aligned_cols=22  Identities=9%  Similarity=-0.037  Sum_probs=18.3

Q ss_pred             eeEEeecceehhhhhhccCCcc
Q psy64            88 YIFIVVKKIIVVIYAKKFSLDI  109 (115)
Q Consensus        88 ~~C~~C~~~~~~~~~~~~h~~~  109 (115)
                      |.|+.|++.|.+...+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888876

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.88  E-value=0.0015  Score=31.11  Aligned_cols=29  Identities=21%  Similarity=0.694  Sum_probs=20.7

Q ss_pred             CCCCCeecCCChhhccChhhHHHHHHHhc
Q psy64            13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        13 ~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      ..+.|..|++|+..+++..+|++|+...+
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            45678999999999999999999997653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.82  E-value=0.00075  Score=27.29  Aligned_cols=22  Identities=36%  Similarity=0.911  Sum_probs=19.9

Q ss_pred             eecCCChhhccChhhHHHHHHH
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKV   39 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~   39 (115)
                      |.|.+|+..|.+...+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            6799999999999999999864

>PRK04860 hypothetical protein; Provisional

Probab=96.69  E-value=0.0016  Score=38.97  Aligned_cols=40  Identities=20%  Similarity=0.514  Sum_probs=31.1

Q ss_pred             CCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVY   73 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~   73 (115)
                      -+|.|. |+.   ....+..|.+              .+.++++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~r--------------i~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNR--------------VVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHH--------------HhcCCccEECCCCCceeEEec
Confidence            468998 987   5556777777              458899999999998876543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.57  E-value=0.0024  Score=25.55  Aligned_cols=22  Identities=32%  Similarity=0.727  Sum_probs=17.2

Q ss_pred             eecCCChhhccChhhHHHHHHHh
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      |+|+.|+.... ...|..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            68999999998 88999998764

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.17  E-value=0.0056  Score=24.41  Aligned_cols=21  Identities=29%  Similarity=0.573  Sum_probs=9.6

Q ss_pred             eecccccccccChhhHHHHHHH
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      |+|+.|+.... ...|..|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            34555555444 4455555544

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=96.12  E-value=0.0021  Score=27.98  Aligned_cols=24  Identities=17%  Similarity=0.386  Sum_probs=18.3

Q ss_pred             eecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      |+|..||..+....            .++.|++|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            68899987665442            6789999986

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.64  E-value=0.011  Score=24.04  Aligned_cols=21  Identities=33%  Similarity=0.770  Sum_probs=14.2

Q ss_pred             eecccccccccChhhHHHHHHH
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      .+|+.||+.| ....+..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3688888888 55566667543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.40  E-value=0.0044  Score=27.09  Aligned_cols=22  Identities=5%  Similarity=-0.028  Sum_probs=14.8

Q ss_pred             ceeEEeecceehhhhhhccCCc
Q psy64            87 KYIFIVVKKIIVVIYAKKFSLD  108 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~~~~h~~  108 (115)
                      +|.|+.|++.|.+...+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4667777777776666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146|consensus

Probab=95.15  E-value=0.013  Score=45.06  Aligned_cols=98  Identities=16%  Similarity=0.295  Sum_probs=69.1

Q ss_pred             cCCCCCeecCCChhhccChhhHHHHHHHh-cChhH-----HHHHHHH-----hhcCCCceecccccccccChhhHHHHHH
Q psy64            12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH-LKMDT-----LENHMKA-----VHEKIRDFQCKVCDRAFFDVYNLKLHMR   80 (115)
Q Consensus        12 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h-~~~~~-----l~~h~~~-----~h~~~~~~~C~~c~~~~~~~~~l~~h~~   80 (115)
                      +.-.+.+.|+.|++.|+....|-.|++.- .....     ...|.+.     ...+.++|.|..|...+...+.|..|+.
T Consensus       460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             ecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence            34457899999999999999999999873 21111     1111110     1234568999999999999998888866


Q ss_pred             Hhc-------------------------------------CC------CceeEEeecceehhhhhhccCCcc
Q psy64            81 IHT-------------------------------------GE------KKYIFIVVKKIIVVIYAKKFSLDI  109 (115)
Q Consensus        81 ~h~-------------------------------------~~------~~~~C~~C~~~~~~~~~~~~h~~~  109 (115)
                      .-.                                     +.      -.|.|.+|++-......|.-|+..
T Consensus       540 S~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmts  611 (1406)
T KOG1146|consen  540 SDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTA  611 (1406)
T ss_pred             HHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhcccccccc
Confidence            420                                     01      237899999988888888888764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.98  E-value=0.024  Score=24.64  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=20.2

Q ss_pred             CeecCCChhhccChhhHHHHHHH
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKV   39 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~   39 (115)
                      +|.|++|+..|.+...+..|...
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68899999999999999888753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.89  E-value=0.0097  Score=40.23  Aligned_cols=55  Identities=24%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             CceecccccccccChhhHHHHHH--HhcCC--CceeEE--eecceehhhhhhccCCccccc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMR--IHTGE--KKYIFI--VVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~--~h~~~--~~~~C~--~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .++.|..|...|.....+..|.+  .|.++  +|+.|+  .|++.|.....+..|..+|..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  348 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS  348 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccC
Confidence            46889999999999999999999  89999  999999  799999999999999998864

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=94.47  E-value=0.014  Score=35.10  Aligned_cols=25  Identities=24%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      +.|.|+.||.             ++.|+.|.+|++||.
T Consensus       133 ~~~vC~vCGy-------------~~~ge~P~~CPiCga  157 (166)
T COG1592         133 KVWVCPVCGY-------------THEGEAPEVCPICGA  157 (166)
T ss_pred             CEEEcCCCCC-------------cccCCCCCcCCCCCC
Confidence            3799999986             356788999999995

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=94.24  E-value=0.018  Score=25.23  Aligned_cols=26  Identities=15%  Similarity=0.131  Sum_probs=18.2

Q ss_pred             ceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      .|.|..||..+...            +.|..|++|+..
T Consensus         2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~~   27 (34)
T cd00729           2 VWVCPVCGYIHEGE------------EAPEKCPICGAP   27 (34)
T ss_pred             eEECCCCCCEeECC------------cCCCcCcCCCCc
Confidence            47899998765432            256789999863

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2893|consensus

Probab=94.24  E-value=0.012  Score=37.27  Aligned_cols=43  Identities=33%  Similarity=0.665  Sum_probs=33.0

Q ss_pred             eecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHH
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLH   78 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h   78 (115)
                      -.|.+|++.|..+.-|..|++                  .|.|+|.+|.+....-..|..|
T Consensus        11 pwcwycnrefddekiliqhqk------------------akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQK------------------AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ceeeecccccchhhhhhhhhh------------------hccceeeeehhhhccCCCceee
Confidence            369999999999998887765                  5779999998766555555444

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=93.99  E-value=0.022  Score=28.08  Aligned_cols=33  Identities=12%  Similarity=0.107  Sum_probs=21.7

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      -.|.|+.||..--..-     .+-..-..+|+|+.||.
T Consensus        26 v~F~CPnCGe~~I~Rc-----~~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          26 VKFPCPNCGEVEIYRC-----AKCRKLGNPYRCPKCGF   58 (61)
T ss_pred             eEeeCCCCCceeeehh-----hhHHHcCCceECCCcCc
Confidence            3589999995443332     22223357899999995

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=93.97  E-value=0.036  Score=24.72  Aligned_cols=34  Identities=18%  Similarity=0.140  Sum_probs=24.0

Q ss_pred             eecccccccccChhhHHHHHHHhcCCCceeEEeecceeh
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      +.|+.|+..|.-.....     ........|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~-----~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL-----GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHc-----CCCCCEEECCCCCCEEE
Confidence            57999998888776432     12223578999998875

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=93.73  E-value=0.04  Score=30.81  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=24.5

Q ss_pred             eecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccCh
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV   72 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~   72 (115)
                      ..|+.||..|...                         +..|..||.||..|...
T Consensus        10 R~Cp~CG~kFYDL-------------------------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-------------------------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-------------------------CCCCccCCCCCCccCcc
Confidence            5799999999863                         23688999999988776

The function of members of this family is unknown.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=93.71  E-value=0.097  Score=30.90  Aligned_cols=46  Identities=15%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccC
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD   71 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~   71 (115)
                      -+..-.+...|.|+.|+..|.....+..                 ... ...|.||.||.....
T Consensus        90 ~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~-----------------~d~-~~~f~Cp~Cg~~l~~  135 (147)
T smart00531       90 KLEDETNNAYYKCPNCQSKYTFLEANQL-----------------LDM-DGTFTCPRCGEELEE  135 (147)
T ss_pred             HHhcccCCcEEECcCCCCEeeHHHHHHh-----------------cCC-CCcEECCCCCCEEEE
Confidence            3333445667999999988886443221                 011 233899999976543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=93.69  E-value=0.051  Score=24.22  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=24.9

Q ss_pred             eecccccccccChhhHHHHHHHhcCCCceeEEeecceeh
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      ..|+.|+..|.-...-     .-.+....+|+.|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~-----l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK-----LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHH-----cccCCcEEECCCCCcEee
Confidence            4799999888877642     234455789999998874

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.48  E-value=0.0074  Score=37.83  Aligned_cols=44  Identities=14%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             CCceecccccccccChhhHHHHHHH---h-------cCCCc-----eeEEeecceehhh
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRI---H-------TGEKK-----YIFIVVKKIIVVI  100 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~---h-------~~~~~-----~~C~~C~~~~~~~  100 (115)
                      ++.+.||.|+..|....-.....+.   .       .+..|     ++|+.||+.+...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4668999999999976433222221   1       23444     4899999988754

>KOG1146|consensus

Probab=93.27  E-value=0.014  Score=44.99  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=47.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHh-------------------------cCCCceeEEeecceehhhhhhccCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIH-------------------------TGEKKYIFIVVKKIIVVIYAKKFSL  107 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h-------------------------~~~~~~~C~~C~~~~~~~~~~~~h~  107 (115)
                      .+...+.++|+.|+..|.....|..|++.-                         .+.++|.|..|.+.+.....|..|+
T Consensus       459 L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihl  538 (1406)
T KOG1146|consen  459 LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHL  538 (1406)
T ss_pred             eecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHH
Confidence            344558899999999999999999998871                         1337899999999999999999887


Q ss_pred             cc
Q psy64           108 DI  109 (115)
Q Consensus       108 ~~  109 (115)
                      ..
T Consensus       539 qS  540 (1406)
T KOG1146|consen  539 QS  540 (1406)
T ss_pred             HH
Confidence            63

>TIGR00622 ssl1 transcription factor ssl1

Probab=93.08  E-value=0.035  Score=31.16  Aligned_cols=90  Identities=19%  Similarity=0.280  Sum_probs=55.0

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhcC--hhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHLK--MDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~~--~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      +-|-.|++||...-+..+|.+.-  |+.  ...+.+-..  ........|-.|+..|.......  ...-.....|+|+.
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~--~~~~~~~~C~~C~~~f~~~~~~~--~~~~~~~~~y~C~~   86 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPL--EEYNGSRFCFGCQGPFPKPPVSP--FDELKDSHRYVCAV   86 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhh--hccCCCcccccccc--cccCCCCcccCcCCCCCCccccc--ccccccccceeCCC
Confidence            35788999999999999888763  321  111111000  00111224888998887654211  01123345799999


Q ss_pred             ecceehhhhhhccCCccc
Q psy64            93 VKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        93 C~~~~~~~~~~~~h~~~h  110 (115)
                      |...|-...+...|-..|
T Consensus        87 C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        87 CKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             CCCccccccchhhhhhcc
Confidence            999999888887777665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=92.95  E-value=0.14  Score=34.41  Aligned_cols=30  Identities=3%  Similarity=-0.037  Sum_probs=25.9

Q ss_pred             HHHhcCCCceeEEeec-ceehhhhhhccCCc
Q psy64            79 MRIHTGEKKYIFIVVK-KIIVVIYAKKFSLD  108 (115)
Q Consensus        79 ~~~h~~~~~~~C~~C~-~~~~~~~~~~~h~~  108 (115)
                      .+.|.-++.|.|++|| +.+..+..+.+|+.
T Consensus       366 ~klhgLd~ef~CEICgNyvy~GR~~FdrHF~  396 (470)
T COG5188         366 CKLHGLDIEFECEICGNYVYYGRDRFDRHFE  396 (470)
T ss_pred             HHhcCCCcceeeeecccccccchHHHHhhhh
Confidence            3567778899999999 89999999999975

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=92.88  E-value=0.076  Score=23.53  Aligned_cols=34  Identities=12%  Similarity=0.144  Sum_probs=24.3

Q ss_pred             eecccccccccChhhHHHHHHHhcCCCceeEEeecceeh
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      ..|+.|+..|.-....     .-......+|+.|+..|.
T Consensus         3 i~Cp~C~~~y~i~d~~-----ip~~g~~v~C~~C~~~f~   36 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-----IPPKGRKVRCSKCGHVFF   36 (36)
T ss_pred             EECCCCCCEEeCCHHH-----CCCCCcEEECCCCCCEeC
Confidence            5799999888877653     223345679999998873

>KOG2893|consensus

Probab=92.68  E-value=0.072  Score=33.91  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=36.2

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccC
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFS  106 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h  106 (115)
                      .|+ .|=.|++.|....-|.+|++.    |-|+|.+|.|...+-..|..|
T Consensus         9 ~kp-wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen    9 DKP-WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             CCc-eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceee
Confidence            566 488999999999999988765    459999999987777666555

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=92.58  E-value=0.071  Score=26.30  Aligned_cols=33  Identities=12%  Similarity=0.226  Sum_probs=21.4

Q ss_pred             Cceeccccccc-ccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            58 RDFQCKVCDRA-FFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        58 ~~~~C~~c~~~-~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      -.|.|+.||.. ..+-..-      -.-..+|.|+.||..
T Consensus        24 ~~F~CPnCG~~~I~RC~~C------Rk~~~~Y~CP~CGF~   57 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCEKC------RKQSNPYTCPKCGFE   57 (59)
T ss_pred             CEeeCCCCCCeeEeechhH------HhcCCceECCCCCCc
Confidence            45899999986 3332221      122468999999953

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.50  E-value=0.084  Score=25.69  Aligned_cols=29  Identities=17%  Similarity=0.348  Sum_probs=24.6

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHH
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKV   39 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~   39 (115)
                      ...||..+.|+-||..|+......+|.-.
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            34678889999999999999999988754

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=92.45  E-value=0.15  Score=30.55  Aligned_cols=44  Identities=20%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             HHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccC
Q psy64             5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD   71 (115)
Q Consensus         5 l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~   71 (115)
                      +..-+...++..-|.|+.|+..|.....+.                       ..|.||.||.....
T Consensus        97 lk~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~-----------------------~~F~Cp~Cg~~L~~  140 (158)
T TIGR00373        97 LREKLEFETNNMFFICPNMCVRFTFNEAME-----------------------LNFTCPRCGAMLDY  140 (158)
T ss_pred             HHHHHhhccCCCeEECCCCCcEeeHHHHHH-----------------------cCCcCCCCCCEeee
Confidence            334444455667799999998888766532                       25899999966443

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=92.25  E-value=0.073  Score=28.39  Aligned_cols=33  Identities=9%  Similarity=0.070  Sum_probs=23.5

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVI  100 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~  100 (115)
                      ..|.|+.|++.-.        .  -.+...|.|..|++.|..-
T Consensus        34 ~~~~Cp~C~~~~V--------k--R~a~GIW~C~kCg~~fAGg   66 (89)
T COG1997          34 AKHVCPFCGRTTV--------K--RIATGIWKCRKCGAKFAGG   66 (89)
T ss_pred             cCCcCCCCCCcce--------e--eeccCeEEcCCCCCeeccc
Confidence            4689999986411        1  2345689999999998753

>KOG2231|consensus

Probab=91.82  E-value=0.24  Score=36.14  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=50.5

Q ss_pred             cCCChhhccChhhHHHHHHHhc----------------------ChhHHHHHHHHhhcCCC----ceecccccccccChh
Q psy64            20 CNMCPSTFKLKKHLRQHYKVHL----------------------KMDTLENHMKAVHEKIR----DFQCKVCDRAFFDVY   73 (115)
Q Consensus        20 C~~C~~~~~~~~~l~~h~~~h~----------------------~~~~l~~h~~~~h~~~~----~~~C~~c~~~~~~~~   73 (115)
                      |..| ..|.....|..|+...+                      .+..|..|+.....++.    --.|..|...|....
T Consensus       118 ~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~  196 (669)
T KOG2231|consen  118 CLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDD  196 (669)
T ss_pred             Cccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHH
Confidence            4444 44447778888874322                      56667777763222111    136888888888888


Q ss_pred             hHHHHHHHhcCCCceeEEeec------ceehhhhhhccCCccc
Q psy64            74 NLKLHMRIHTGEKKYIFIVVK------KIIVVIYAKKFSLDIE  110 (115)
Q Consensus        74 ~l~~h~~~h~~~~~~~C~~C~------~~~~~~~~~~~h~~~h  110 (115)
                      .+..|++...    |.|-.|.      -.|.+-.+|..|.+.+
T Consensus       197 el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~  235 (669)
T KOG2231|consen  197 ELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKG  235 (669)
T ss_pred             HHHHhhccce----eheeecCcccccchhcccchHHHHHhhhc
Confidence            8888877654    3444442      3444455555555543

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=91.80  E-value=0.022  Score=33.87  Aligned_cols=16  Identities=6%  Similarity=-0.025  Sum_probs=12.5

Q ss_pred             ceeEEeecceehhhhh
Q psy64            87 KYIFIVVKKIIVVIYA  102 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~  102 (115)
                      .+.|+.||++|..-..
T Consensus        28 ~~~c~~c~~~f~~~e~   43 (154)
T PRK00464         28 RRECLACGKRFTTFER   43 (154)
T ss_pred             eeeccccCCcceEeEe
Confidence            4899999999976543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=91.70  E-value=0.36  Score=28.51  Aligned_cols=40  Identities=8%  Similarity=0.127  Sum_probs=27.4

Q ss_pred             cCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceeh
Q psy64            55 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        55 ~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      .+...|.|+.|+..|.....+..    -..+.-|.|+.||....
T Consensus        95 ~~~~~Y~Cp~C~~~y~~~ea~~~----~d~~~~f~Cp~Cg~~l~  134 (147)
T smart00531       95 TNNAYYKCPNCQSKYTFLEANQL----LDMDGTFTCPRCGEELE  134 (147)
T ss_pred             cCCcEEECcCCCCEeeHHHHHHh----cCCCCcEECCCCCCEEE
Confidence            45567899999998886544321    11234499999998763

>KOG2186|consensus

Probab=91.67  E-value=0.15  Score=32.65  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=29.1

Q ss_pred             eecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCC
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSL  107 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~  107 (115)
                      |.|..||....-+. +-.|+....+ .-|.|-.|+++|.. .+...|.
T Consensus         4 FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~   48 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHT   48 (276)
T ss_pred             Eehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhh
Confidence            67788877655443 4457766666 55788888888876 4444443

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=91.22  E-value=0.22  Score=29.85  Aligned_cols=36  Identities=8%  Similarity=-0.025  Sum_probs=28.3

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceeh
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      ..+..-|.|+.|+..|+....+.         .-|.|+.||....
T Consensus       104 e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~  139 (158)
T TIGR00373       104 ETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD  139 (158)
T ss_pred             ccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence            34566789999999888887764         2699999998653

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=91.04  E-value=0.22  Score=30.46  Aligned_cols=41  Identities=17%  Similarity=0.504  Sum_probs=28.4

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccC
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD   71 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~   71 (115)
                      -+..-....-|.|+.|+..|.....+                       +..|.|+.||.....
T Consensus       108 ~l~~e~~~~~Y~Cp~C~~rytf~eA~-----------------------~~~F~Cp~Cg~~L~~  148 (178)
T PRK06266        108 QLEEEENNMFFFCPNCHIRFTFDEAM-----------------------EYGFRCPQCGEMLEE  148 (178)
T ss_pred             HhhhccCCCEEECCCCCcEEeHHHHh-----------------------hcCCcCCCCCCCCee
Confidence            33334455679999999998876542                       135899999976554

>KOG2186|consensus

Probab=90.95  E-value=0.16  Score=32.55  Aligned_cols=51  Identities=25%  Similarity=0.494  Sum_probs=35.7

Q ss_pred             CeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcC
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      -|.|..||.+..-+ .+..|+..              -++ .-|.|..||+.|.. ..+..|..--++
T Consensus         3 ~FtCnvCgEsvKKp-~vekH~sr--------------Crn-~~fSCIDC~k~F~~-~sYknH~kCITE   53 (276)
T KOG2186|consen    3 FFTCNVCGESVKKP-QVEKHMSR--------------CRN-AYFSCIDCGKTFER-VSYKNHTKCITE   53 (276)
T ss_pred             EEehhhhhhhcccc-chHHHHHh--------------ccC-CeeEEeeccccccc-chhhhhhhhcch
Confidence            47899999987754 35556542              234 56899999999999 455667655443

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=90.71  E-value=0.079  Score=24.76  Aligned_cols=31  Identities=13%  Similarity=0.068  Sum_probs=21.7

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceeh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      ..|.|+.||..+......          ....|+.||..+.
T Consensus         2 ~~y~C~~CG~~~~~~~~~----------~~~~Cp~CG~~~~   32 (46)
T PRK00398          2 AEYKCARCGREVELDEYG----------TGVRCPYCGYRIL   32 (46)
T ss_pred             CEEECCCCCCEEEECCCC----------CceECCCCCCeEE
Confidence            358899999877664321          1679999987554

>KOG2593|consensus

Probab=90.37  E-value=0.32  Score=33.56  Aligned_cols=51  Identities=18%  Similarity=0.546  Sum_probs=34.3

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccc
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAF   69 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~   69 (115)
                      +..|..-++.-+....|.|+.|.+.|.....++.                 .-...-.|.|..|+--.
T Consensus       113 ~krled~~~d~t~~~~Y~Cp~C~kkyt~Lea~~L-----------------~~~~~~~F~C~~C~gel  163 (436)
T KOG2593|consen  113 RKRLEDRLRDDTNVAGYVCPNCQKKYTSLEALQL-----------------LDNETGEFHCENCGGEL  163 (436)
T ss_pred             HHHHHHHhhhccccccccCCccccchhhhHHHHh-----------------hcccCceEEEecCCCch
Confidence            3445555566677788999999999987765442                 11234568898887443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.04  E-value=0.056  Score=36.54  Aligned_cols=71  Identities=21%  Similarity=0.331  Sum_probs=55.8

Q ss_pred             CCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCC--Cceecc--cccccccChhhHHHHHHHhcCCCceeEE
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKI--RDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~--~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .++.|..|...|.....+..|.+.            ..|.++  +++.|+  .|++.|.+...+..|...|.+..++.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~------------~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRS------------VNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             cCCCCccccCCccccccccccccc------------cccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            468899999999999988888772            024677  899999  7999999999999999999887776653


Q ss_pred             --eecceeh
Q psy64            92 --VVKKIIV   98 (115)
Q Consensus        92 --~C~~~~~   98 (115)
                        .|.+.+.
T Consensus       356 ~~~~~~~~~  364 (467)
T COG5048         356 LLNSSSKFS  364 (467)
T ss_pred             cccCccccc
Confidence              3444433

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=90.02  E-value=0.049  Score=26.08  Aligned_cols=29  Identities=10%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             eecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      |.|..||..|.....+.      . +.+-.|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~------~-~~~~~CP~Cg~   34 (52)
T TIGR02605         6 YRCTACGHRFEVLQKMS------D-DPLATCPECGG   34 (52)
T ss_pred             EEeCCCCCEeEEEEecC------C-CCCCCCCCCCC
Confidence            78999999888654321      1 34567999986

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=89.81  E-value=0.051  Score=24.51  Aligned_cols=30  Identities=10%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             ceecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      .|+|+.||..|......       .....-.|+.||.
T Consensus         5 ~y~C~~Cg~~fe~~~~~-------~~~~~~~CP~Cg~   34 (41)
T smart00834        5 EYRCEDCGHTFEVLQKI-------SDDPLATCPECGG   34 (41)
T ss_pred             EEEcCCCCCEEEEEEec-------CCCCCCCCCCCCC
Confidence            37899999888765442       1144567999987

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.39  E-value=0.22  Score=24.29  Aligned_cols=28  Identities=14%  Similarity=0.234  Sum_probs=21.2

Q ss_pred             cCCCceecccccccccChhhHHHHHHHh
Q psy64            55 EKIRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        55 ~~~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      .|+.-+.||-||..|.....+..|...-
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKa   40 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKA   40 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHH
Confidence            5666678888888888888887776543

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=89.31  E-value=0.24  Score=30.26  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=26.9

Q ss_pred             cCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceeh
Q psy64            55 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        55 ~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      .+..-|.|+.|+..|+....+.         .-|.|+.||....
T Consensus       113 ~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~  147 (178)
T PRK06266        113 ENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLE  147 (178)
T ss_pred             cCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence            3456789999999888876652         3699999998653

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=89.22  E-value=0.23  Score=23.08  Aligned_cols=27  Identities=11%  Similarity=-0.023  Sum_probs=18.5

Q ss_pred             ceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      .|.|..||..|...           ...+..|+.||..
T Consensus         2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK-----------SKDVVRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC-----------CCCceECCCCCce
Confidence            37888888766643           2345788888864

present in RNA polymerase I, II and III

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=88.92  E-value=0.26  Score=28.31  Aligned_cols=33  Identities=15%  Similarity=0.014  Sum_probs=25.2

Q ss_pred             CeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhh
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYN   74 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~   74 (115)
                      ...|+.||..|...                         +..|..|+.||..|.....
T Consensus         9 Kr~Cp~cg~kFYDL-------------------------nk~p~vcP~cg~~~~~~~~   41 (129)
T TIGR02300         9 KRICPNTGSKFYDL-------------------------NRRPAVSPYTGEQFPPEEA   41 (129)
T ss_pred             cccCCCcCcccccc-------------------------CCCCccCCCcCCccCcchh
Confidence            35799999998863                         3468899999998866633

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=88.28  E-value=0.27  Score=31.74  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=47.8

Q ss_pred             CCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChh------hHHHHHHH----hc
Q psy64            14 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVY------NLKLHMRI----HT   83 (115)
Q Consensus        14 ~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~------~l~~h~~~----h~   83 (115)
                      |.+.|+|..|..-+-.... -.|+..-            +......|+|..|++.-..+=      .-..|.+.    ..
T Consensus       139 GGrif~CsfC~~flCEDDQ-FEHQAsC------------QvLe~E~~KC~SCNrlGq~sCLRCK~cfCddHvrrKg~ky~  205 (314)
T PF06524_consen  139 GGRIFKCSFCDNFLCEDDQ-FEHQASC------------QVLESETFKCQSCNRLGQYSCLRCKICFCDDHVRRKGFKYE  205 (314)
T ss_pred             CCeEEEeecCCCeeeccch-hhhhhhh------------hhhhcccccccccccccchhhhheeeeehhhhhhhcccccc
Confidence            5678999999765544333 3344321            122345678888876554431      11223332    22


Q ss_pred             CCCceeEEeecceehhhhhhccCCccc
Q psy64            84 GEKKYIFIVVKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        84 ~~~~~~C~~C~~~~~~~~~~~~h~~~h  110 (115)
                      ..+++.|+.|++......+|.--.++|
T Consensus       206 k~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  206 KGKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             cCCCCCCCCCCCcccccccceeeeecc
Confidence            347889999998877776665444443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=86.45  E-value=0.17  Score=26.13  Aligned_cols=44  Identities=14%  Similarity=0.144  Sum_probs=26.9

Q ss_pred             eecccccccccChhhHHHHHHHhcCCCceeEE--eecceehhhhhhcc
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI--VVKKIIVVIYAKKF  105 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~--~C~~~~~~~~~~~~  105 (115)
                      +.|+.||........-...  ....+.-+.|.  .||.+|..-.++.+
T Consensus         2 m~CP~Cg~~a~irtSr~~s--~~~~~~Y~qC~N~eCg~tF~t~es~s~   47 (72)
T PRK09678          2 FHCPLCQHAAHARTSRYIT--DTTKERYHQCQNVNCSATFITYESVQR   47 (72)
T ss_pred             ccCCCCCCccEEEEChhcC--hhhheeeeecCCCCCCCEEEEEEEEEE
Confidence            4688898655333322111  22455668897  89999987665543

>KOG2636|consensus

Probab=85.41  E-value=0.37  Score=33.46  Aligned_cols=29  Identities=10%  Similarity=0.031  Sum_probs=25.3

Q ss_pred             HHhcCCCceeEEeec-ceehhhhhhccCCc
Q psy64            80 RIHTGEKKYIFIVVK-KIIVVIYAKKFSLD  108 (115)
Q Consensus        80 ~~h~~~~~~~C~~C~-~~~~~~~~~~~h~~  108 (115)
                      +.|.-...|.|++|| +++..+..+.+|+.
T Consensus       394 KLHGL~~ey~CEICGNy~Y~GrkaF~RHF~  423 (497)
T KOG2636|consen  394 KLHGLDIEYNCEICGNYVYKGRKAFDRHFN  423 (497)
T ss_pred             hhcCCCcccceeeccCccccCcHHHHHHhH
Confidence            456777889999999 99999999999986

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=85.18  E-value=0.4  Score=25.82  Aligned_cols=14  Identities=36%  Similarity=0.752  Sum_probs=12.6

Q ss_pred             CCeecCCChhhccC
Q psy64            16 RPFVCNMCPSTFKL   29 (115)
Q Consensus        16 ~~~~C~~C~~~~~~   29 (115)
                      +|..|..||..|+.
T Consensus        57 ~Pa~CkkCGfef~~   70 (97)
T COG3357          57 RPARCKKCGFEFRD   70 (97)
T ss_pred             cChhhcccCccccc
Confidence            68899999999987

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=85.16  E-value=0.38  Score=25.99  Aligned_cols=32  Identities=13%  Similarity=0.208  Sum_probs=23.2

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   99 (115)
                      ..|.|+.||+.-...          .+...|.|..|+++|..
T Consensus        35 a~y~CpfCgk~~vkR----------~a~GIW~C~~C~~~~AG   66 (90)
T PTZ00255         35 AKYFCPFCGKHAVKR----------QAVGIWRCKGCKKTVAG   66 (90)
T ss_pred             CCccCCCCCCCceee----------eeeEEEEcCCCCCEEeC
Confidence            568999998643222          23468999999999875

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.02  E-value=0.62  Score=31.49  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=18.5

Q ss_pred             ecCCChhhccChhhHHHHHHHh
Q psy64            19 VCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        19 ~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      .|..|..-|.+...|..|++..
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~  243 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLR  243 (493)
T ss_pred             hhhhccceecChHHHHHHHHhh
Confidence            4999999999999999988753

>PF14353 CpXC: CpXC protein

Probab=84.95  E-value=0.61  Score=26.73  Aligned_cols=49  Identities=12%  Similarity=0.158  Sum_probs=27.9

Q ss_pred             eecccccccccChhhHHHH--------HHHhcCC-CceeEEeecceehhhhhhccCCc
Q psy64            60 FQCKVCDRAFFDVYNLKLH--------MRIHTGE-KKYIFIVVKKIIVVIYAKKFSLD  108 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h--------~~~h~~~-~~~~C~~C~~~~~~~~~~~~h~~  108 (115)
                      ..||.||..|.........        .+.-.|+ ..|.|+.||..|.-...+.-|-.
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~   59 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDP   59 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcC
Confidence            3688888877654211111        1122222 45889999988877666554443

>PHA00626 hypothetical protein

Probab=84.83  E-value=0.38  Score=23.48  Aligned_cols=16  Identities=6%  Similarity=-0.184  Sum_probs=12.4

Q ss_pred             CCceeEEeecceehhh
Q psy64            85 EKKYIFIVVKKIIVVI  100 (115)
Q Consensus        85 ~~~~~C~~C~~~~~~~  100 (115)
                      ...|+|..||+.|+..
T Consensus        21 snrYkCkdCGY~ft~~   36 (59)
T PHA00626         21 SDDYVCCDCGYNDSKD   36 (59)
T ss_pred             CcceEcCCCCCeechh
Confidence            3579999999988754

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=84.51  E-value=0.43  Score=19.15  Aligned_cols=11  Identities=27%  Similarity=0.618  Sum_probs=8.5

Q ss_pred             CCceecccccc
Q psy64            57 IRDFQCKVCDR   67 (115)
Q Consensus        57 ~~~~~C~~c~~   67 (115)
                      .-+|.|+.||+
T Consensus        14 ~v~f~CPnCG~   24 (24)
T PF07754_consen   14 AVPFPCPNCGF   24 (24)
T ss_pred             CceEeCCCCCC
Confidence            35789999984

It is likely to bind zinc via its four well-conserved cysteine residues.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=84.50  E-value=0.5  Score=22.50  Aligned_cols=30  Identities=10%  Similarity=0.275  Sum_probs=20.3

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      ...|.|..||+.|.          .-.......|+.||..
T Consensus         4 ~~~Y~C~~Cg~~~~----------~~~~~~~irCp~Cg~r   33 (49)
T COG1996           4 MMEYKCARCGREVE----------LDQETRGIRCPYCGSR   33 (49)
T ss_pred             eEEEEhhhcCCeee----------hhhccCceeCCCCCcE
Confidence            34689999998872          1223456789888864

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=84.03  E-value=0.49  Score=22.62  Aligned_cols=13  Identities=0%  Similarity=-0.210  Sum_probs=10.8

Q ss_pred             CceeEEeecceeh
Q psy64            86 KKYIFIVVKKIIV   98 (115)
Q Consensus        86 ~~~~C~~C~~~~~   98 (115)
                      ..+.|..||+++.
T Consensus        36 ~r~~C~~Cgyt~~   48 (50)
T PRK00432         36 DRWHCGKCGYTEF   48 (50)
T ss_pred             CcEECCCcCCEEe
Confidence            5789999998764

>KOG2785|consensus

Probab=84.02  E-value=0.46  Score=32.30  Aligned_cols=23  Identities=39%  Similarity=0.761  Sum_probs=20.0

Q ss_pred             CeecCCChhhccChhhHHHHHHH
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKV   39 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~   39 (115)
                      .|.|..|...|......+.|.+.
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKS   25 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKS   25 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhh
Confidence            47899999999999888888764

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=83.49  E-value=0.38  Score=25.98  Aligned_cols=32  Identities=9%  Similarity=0.201  Sum_probs=22.1

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   99 (115)
                      ..|.|+.||+.-...          .....|.|..|+++|..
T Consensus        34 ~ky~Cp~Cgk~~vkR----------~a~GIW~C~~C~~~~AG   65 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKR----------VATGIWKCKKCGKKFAG   65 (90)
T ss_dssp             S-BEESSSSSSEEEE----------EETTEEEETTTTEEEE-
T ss_pred             CCCcCCCCCCceeEE----------eeeEEeecCCCCCEEeC
Confidence            568999999754322          23457999999999864

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>PF13451 zf-trcl: Probable zinc-binding domain

Probab=83.36  E-value=0.67  Score=22.07  Aligned_cols=39  Identities=10%  Similarity=0.076  Sum_probs=24.6

Q ss_pred             CCceecccccccccChhhHHHHHHHhcC-CCceeEEeecc
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTG-EKKYIFIVVKK   95 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~-~~~~~C~~C~~   95 (115)
                      ++.+.|..||..|.....-+....--.- ..|-.|..|-.
T Consensus         2 Dk~l~C~dCg~~FvfTa~EQ~fy~eKgf~n~p~RC~~CR~   41 (49)
T PF13451_consen    2 DKTLTCKDCGAEFVFTAGEQKFYAEKGFDNEPKRCPSCRQ   41 (49)
T ss_pred             CeeEEcccCCCeEEEehhHHHHHHhcCCcCCCccCHHHHH
Confidence            5678999999999887765544332111 13566766643

>KOG2593|consensus

Probab=82.33  E-value=1.8  Score=30.17  Aligned_cols=39  Identities=8%  Similarity=0.293  Sum_probs=28.0

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      -+....|.|+.|++.|..-..++   -.-...-.|.|+.|+-
T Consensus       123 ~t~~~~Y~Cp~C~kkyt~Lea~~---L~~~~~~~F~C~~C~g  161 (436)
T KOG2593|consen  123 DTNVAGYVCPNCQKKYTSLEALQ---LLDNETGEFHCENCGG  161 (436)
T ss_pred             ccccccccCCccccchhhhHHHH---hhcccCceEEEecCCC
Confidence            35667899999999888765543   2233345799999985

>TIGR00280 L37a ribosomal protein L37a

Probab=82.17  E-value=0.52  Score=25.50  Aligned_cols=32  Identities=6%  Similarity=0.171  Sum_probs=22.7

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   99 (115)
                      ..|.|+.||+.-..          -.+...|.|..|+++|..
T Consensus        34 a~y~CpfCgk~~vk----------R~a~GIW~C~~C~~~~AG   65 (91)
T TIGR00280        34 AKYVCPFCGKKTVK----------RGSTGIWTCRKCGAKFAG   65 (91)
T ss_pred             cCccCCCCCCCceE----------EEeeEEEEcCCCCCEEeC
Confidence            46899999864222          123458999999999864

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=81.71  E-value=0.49  Score=20.06  Aligned_cols=24  Identities=8%  Similarity=0.297  Sum_probs=10.4

Q ss_pred             ecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            61 QCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        61 ~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      +|+.|+-.+..           .+.-.++|+.|+.
T Consensus         4 ~Cp~C~se~~y-----------~D~~~~vCp~C~~   27 (30)
T PF08274_consen    4 KCPLCGSEYTY-----------EDGELLVCPECGH   27 (30)
T ss_dssp             --TTT-----E-----------E-SSSEEETTTTE
T ss_pred             CCCCCCCccee-----------ccCCEEeCCcccc
Confidence            57777654443           3345677877764

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=80.52  E-value=1.5  Score=29.79  Aligned_cols=23  Identities=30%  Similarity=0.648  Sum_probs=15.0

Q ss_pred             ecccccccccChhhHHHHHHHhc
Q psy64            61 QCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        61 ~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      .|..|...|-....|..|.+...
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~H  244 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRH  244 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhh
Confidence            46667777777777766665543

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=80.45  E-value=1.1  Score=19.32  Aligned_cols=13  Identities=15%  Similarity=0.644  Sum_probs=8.4

Q ss_pred             Cceeccccccccc
Q psy64            58 RDFQCKVCDRAFF   70 (115)
Q Consensus        58 ~~~~C~~c~~~~~   70 (115)
                      .+..|+.||....
T Consensus        16 ~~irC~~CG~RIl   28 (32)
T PF03604_consen   16 DPIRCPECGHRIL   28 (32)
T ss_dssp             STSSBSSSS-SEE
T ss_pred             CcEECCcCCCeEE
Confidence            3568999986543

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=80.35  E-value=0.42  Score=19.53  Aligned_cols=9  Identities=0%  Similarity=-0.381  Sum_probs=4.1

Q ss_pred             eEEeeccee
Q psy64            89 IFIVVKKII   97 (115)
Q Consensus        89 ~C~~C~~~~   97 (115)
                      .|+.||+.|
T Consensus        16 ~Cp~CG~~F   24 (26)
T PF10571_consen   16 FCPHCGYDF   24 (26)
T ss_pred             cCCCCCCCC
Confidence            344444444

Several members are annotated as putative helicases.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=80.20  E-value=0.45  Score=18.78  Aligned_cols=6  Identities=0%  Similarity=-0.363  Sum_probs=2.7

Q ss_pred             EEeecc
Q psy64            90 FIVVKK   95 (115)
Q Consensus        90 C~~C~~   95 (115)
                      |+.||.
T Consensus        16 C~~CG~   21 (23)
T PF13240_consen   16 CPNCGT   21 (23)
T ss_pred             hhhhCC
Confidence            444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-07
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		2e-06
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-05
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		3e-05
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		3e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		5e-05
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		6e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		6e-05
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		4e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		4e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		4e-04
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		4e-04
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-04
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		5e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		6e-04
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		6e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 5   LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
           L EH   HT ++P+ C  C  +F  KK L +H + H                 + ++C  
Sbjct: 37  LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE--------------KPYKCPE 82
Query: 65  CDRAFFDVYNLKLHMRIHTGE 85
           C ++F    NL+ H R HTGE
Sbjct: 83  CGKSFSQRANLRAHQRTHTGE 103

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYN 74
          D+P+ C+ C ++F+ K +L  H              K VH   + ++C +C   F    N
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH--------------KTVHTGEKPYRCNICGAQFNRPAN 60
Query: 75 LKLHMRIHTGE 85
          LK H RIH+GE
Sbjct: 61 LKTHTRIHSGE 71

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          LK H+  HT ++P+ C+   C   F     L +HY+ H                 R FQC
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--------------RPFQC 69
Query: 63 KVCDRAFFDVYNLKLHMRIH 82
          + CDRAF    +L LHM+ H
Sbjct: 70 QKCDRAFSRSDHLALHMKRH 89

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          LK H+  HT ++P+ C+   C   F     L +HY+ H                 R FQC
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--------------RPFQC 68
Query: 63 KVCDRAFFDVYNLKLHMRIH 82
          + CDRAF    +L LHM+ H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 2  KRQLKEHMAVHTTDRPFVCNMC----PSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKI 57
          K +LK HM  HT  +P+ C  C      +  L KHLR                  +H   
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR------------------IHSDE 62
Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R F+C++C  A  +   L +H+R HTG+
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          L+ H   HT ++P+ C+   C   F     L++H + H                ++ FQC
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG--------------VKPFQC 69
Query: 63 KVCDRAFFDVYNLKLHMRIHTGE 85
          K C R F    +LK H R HTGE
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGE 92

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDR 67
          H   HT +RP+ C++C   F+ + HLR H              + +H K + F+C+ C +
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDH--------------RYIHSKEKPFKCQECGK 81
Query: 68 AFFDVYNLKLHMRIH 82
           F     L +H  +H
Sbjct: 82 GFCQSRTLAVHKTLH 96

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          LK H+  HT ++P+ C    C   F     L +HY+ H                 + FQC
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG--------------AKPFQC 78
Query: 63 KVCDRAFFDVYNLKLHMRIH 82
           VC+R+F    +L LHM+ H
Sbjct: 79 GVCNRSFSRSDHLALHMKRH 98

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+ +H+  RP+ C  C   F  K  +++H                +H   +  +C+V
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH--------------TFIHTGEKPHKCQV 62
Query: 65 CDRAFFDVYNLKLHMRIHTG 84
          C +AF    NL  H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
          K Q   HM++H   RP+ C +C   FK+K HL  H K+H                I+ ++
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT--------------GIKPYE 67
Query: 62 CKVCDRAF 69
          C +C + F
Sbjct: 68 CNICAKRF 75

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          +L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 20 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 65
Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 66 ICGRKFARSDERKRHTKIH 84

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          +L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 66
Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          +L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 66
Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          +L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 66
Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+ +HT  +PF C +C   F    HL  H + H                 + F C +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACDI 67
Query: 65 CDRAFFDVYNLKLHMRIH 82
          C R F      K H +IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 1  MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF 60
           K  L  H+ +HT  +PF C +C   F     L QH + H                 + F
Sbjct: 18 QKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE--------------KPF 63
Query: 61 QCKVCDRAFFDVYNLKLHMRIH 82
           C +C R F  ++    H +IH
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
           L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 21 NLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 66
Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV 72
          +RP+ C +  C   F  K +L  H ++H                 + FQC++C R F   
Sbjct: 2  ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ--------------KPFQCRICMRNFSQQ 47
Query: 73 YNLKLHMRIHTGE 85
           +L  H+R HTGE
Sbjct: 48 ASLNAHIRTHTGE 60

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+ +HT  +PF C +C   F    HL  H + H                 + F C +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACDI 67
Query: 65 CDRAFFDVYNLKLHMRIH 82
          C R F      K H +IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	8e-15
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-10
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-15
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-14
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	6e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-13
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	9e-13
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	9e-13
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-11
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-12
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-12
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	8e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-12
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	9e-12
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-10
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-10
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	9e-10
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-11
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-11
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-05
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	6e-09
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	8e-08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	1e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	7e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	8e-07
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-06
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-06
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	7e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-06
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-06
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	4e-06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-05
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-06
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	6e-06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	6e-06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	5e-04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-06
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	7e-06
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	9e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-06
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-06
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-06
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-04
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	8e-06
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	7e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-06
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-06
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	9e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-06
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	1e-05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	8e-05
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-05
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	1e-05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	3e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-05
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	2e-05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-04
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-05
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	2e-05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-05
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	9e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-05
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	3e-05
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	2e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-05
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-04
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-05
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-05
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-05
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-05
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-05
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	6e-05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-05
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-05
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	6e-05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	8e-05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-05
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
1ard_A	29	Yeast transcription factor ADR1; transcription reg	3e-04
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	4e-04

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 64.5 bits (158), Expect = 3e-15
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
                 HT ++P+ C+ C  TF+ K+ L  H+K +             +     F C  
Sbjct: 3  SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY----HDP------NFVPAAFVCSK 52

Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
          C + F     +  H     G    
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDGV 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 64.1 bits (157), Expect = 3e-15
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 13/85 (15%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
                 H+ ++P+ C +C + F     ++ H                  E +  F C  
Sbjct: 3  SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK------------HTENVAKFHCPH 50

Query: 65 CDRAFFDVYNLKLHMR-IHTGEKKY 88
          CD       +L +H+R  H+     
Sbjct: 51 CDTVIARKSDLGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.6 bits (96), Expect = 5e-06
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 28 KLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE-- 85
                R H        + E          + ++C +C   F     +K+H+     E  
Sbjct: 2  SSGSSGRTH--------SGE----------KPYECYICHARFTQSGTMKMHILQKHTENV 43

Query: 86 KKY 88
           K+
Sbjct: 44 AKF 46

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 64.4 bits (158), Expect = 8e-15
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH--EKIRD 59
          K  LK H   HT ++PF C  C   +  K++L +H   +            ++  E+   
Sbjct: 20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN-----------CMNRSEQ--V 66

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F C VC   F     L+LHM  HTGE  Y
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPY 95

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 53.3 bits (129), Expect = 1e-10
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 18/89 (20%)

Query: 2   KRQLKEHM---AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIR 58
           K  L EH     ++ +++ F C++C  TF+ +  LR H   H    T E           
Sbjct: 48  KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH----TGE----------M 93

Query: 59  DFQCKVCDRAFFDVYNLKLHM-RIHTGEK 86
            ++C  C + F    +L+ HM ++H+G  
Sbjct: 94  PYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 51.7 bits (125), Expect = 5e-10
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 17/80 (21%)

Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
           +      C  C   F  K +L+ H + H    T E          + F+C  C + +F 
Sbjct: 2  SSGSSGVECPTCHKKFLSKYYLKVHNRKH----TGE----------KPFECPKCGKCYFR 47

Query: 72 VYNLKLHMR---IHTGEKKY 88
            NL  H     ++  E+ +
Sbjct: 48 KENLLEHEARNCMNRSEQVF 67

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 63.3 bits (155), Expect = 9e-15
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 14/82 (17%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+ +HT  +PF C +C   F    HL  H + H    T E          + F C +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH----TGE----------KPFACDI 67

Query: 65 CDRAFFDVYNLKLHMRIHTGEK 86
          C R F      K H +IH  +K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 48.6 bits (117), Expect = 4e-09
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 16/75 (21%)

Query: 16 RPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 73
          RP+ C +  C   F     L +H ++H    T +          + FQC++C R F    
Sbjct: 3  RPYACPVESCDRRFSQSGSLTRHIRIH----TGQ----------KPFQCRICMRNFSRSD 48

Query: 74 NLKLHMRIHTGEKKY 88
          +L  H+R HTGEK +
Sbjct: 49 HLTTHIRTHTGEKPF 63

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 62.4 bits (153), Expect = 2e-14
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          LK HM  HT  +P+ C  C         L +H ++H    + E          R F+C++
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH----SDE----------RPFKCQI 69

Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
          C  A  +   L +H+R HTG+   
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSGP 93

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 55.9 bits (136), Expect = 6e-12
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
            +  P  C +C   F  K  L+ H + H    T            + ++CK CD A  D
Sbjct: 3  SGSSGPHKCEVCGKCFSRKDKLKTHMRCH----TGV----------KPYKCKTCDYAAAD 48

Query: 72 VYNLKLHMRIHTGEKKY 88
            +L  H+RIH+ E+ +
Sbjct: 49 SSSLNKHLRIHSDERPF 65

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 60.9 bits (149), Expect = 5e-14
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 14/88 (15%)

Query: 1  MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF 60
          M      H  +  +D+P+ C+ C ++F+ K +L  H  VH    T E          + +
Sbjct: 1  MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH----TGE----------KPY 46

Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          +C +C   F    NLK H RIH+GEK Y
Sbjct: 47 RCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 61.8 bits (151), Expect = 6e-14
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 16/86 (18%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          L+ H   HT ++P+ C+   C   F     L++H + H    T            + FQC
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH----TGV----------KPFQC 69

Query: 63 KVCDRAFFDVYNLKLHMRIHTGEKKY 88
          K C R F    +LK H R HTGEK +
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGEKPF 95

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.4 bits (119), Expect = 4e-09
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 16/81 (19%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
           QLK H   HT  +PF C  C   F    HL+ H + H    T E          + F C+
Sbjct: 53  QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH----TGE----------KPFSCR 98

Query: 64  V--CDRAFFDVYNLKLHMRIH 82
              C + F     L  H  +H
Sbjct: 99  WPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 18/80 (22%)

Query: 13 TTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRA 68
          +  RPF+C    C   +    HL+ H + H    T E          + +QC    C+R 
Sbjct: 2  SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH----TGE----------KPYQCDFKDCERR 47

Query: 69 FFDVYNLKLHMRIHTGEKKY 88
          F     LK H R HTG K +
Sbjct: 48 FSRSDQLKRHQRRHTGVKPF 67

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 59.8 bits (146), Expect = 3e-13
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
                   T + F+C  C   F    +L  H + H    T E          R + C +
Sbjct: 5  SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH----TDE----------RPYTCDI 50

Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
          C +AF    +L+ H  IH+ EK +
Sbjct: 51 CHKAFRRQDHLRDHRYIHSKEKPF 74

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 58.2 bits (142), Expect = 1e-12
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
            L  H   HT +RP+ C++C   F+ + HLR H  +H    + E          + F+C+
Sbjct: 32  NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH----SKE----------KPFKCQ 77

Query: 64  VCDRAFFDVYNLKLHMRIHTGEKKY 88
            C + F     L +H  +H      
Sbjct: 78  ECGKGFCQSRTLAVHKTLHMQTSSP 102

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 58.3 bits (142), Expect = 5e-13
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
                +H+ ++P+ C  C   F     L QH +VH    T E          + ++C  
Sbjct: 2  SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH----TGE----------KPYKCLE 47

Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
          C +AF     L  H RIHT     
Sbjct: 48 CGKAFSQNSGLINHQRIHTSGPSS 71

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 59.6 bits (145), Expect = 9e-13
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          Q      +           C  TF     L  H  +      +    +  H      +C 
Sbjct: 12 QELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME----HVGGPEQNNH-VCYWEECP 66

Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
             ++F   Y L  H+R+HTGEK +
Sbjct: 67 REGKSFKAKYKLVNHIRVHTGEKPF 91

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 54.6 bits (132), Expect = 8e-11
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 18/88 (20%)

Query: 5   LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
           L  H+ VHT ++PF C    C   F   ++L+ H + H    T E          + F+C
Sbjct: 78  LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH----TGE----------KPFKC 123

Query: 63  KV--CDRAFFDVYNLKLHMRIHTGEKKY 88
           +   CDR F +  + K HM +HT +K  
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSG 151

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 54.2 bits (131), Expect = 1e-10
 Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 25/96 (26%)

Query: 4   QLKEHMAVHTTDRPFV---------CNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH 54
           +L  H+ +     P           C     +FK K  L  H +VH    T E       
Sbjct: 40  ELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH----TGE------- 88

Query: 55  EKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
              + F C    C + F    NLK+H R HTGEK +
Sbjct: 89  ---KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 57.5 bits (140), Expect = 9e-13
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 14/79 (17%)

Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAF 69
          +  ++  P  C+ C  +   K  LR H ++H      +          R F+C  C    
Sbjct: 2  SSGSSGHPEKCSECSYSCSSKAALRIHERIH----CTD----------RPFKCNYCSFDT 47

Query: 70 FDVYNLKLHMRIHTGEKKY 88
              NL  HM+   G+   
Sbjct: 48 KQPSNLSKHMKKFHGDMSG 66

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.3 bits (98), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          K  L+ H  +H TDRPF CN C    K   +L +H K  
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 58.6 bits (143), Expect = 9e-13
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 16/85 (18%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          Q   HM++H   RP+ C +C   FK+K HL  H K+H    T            + ++C 
Sbjct: 24 QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH----TGI----------KPYECN 69

Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
          +C + F  ++    H  + +  K Y
Sbjct: 70 ICAKRF--MWRDSFHRHVTSCTKSY 92

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 53.6 bits (130), Expect = 7e-11
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 9  MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRA 68
           +  + D+ + C  C  +F  K    +H  +H                 R + C VC + 
Sbjct: 2  SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH----LGL----------RPYGCGVCGKK 46

Query: 69 FFDVYNLKLHMRIHTGEKKY 88
          F   ++L  HM+IHTG K Y
Sbjct: 47 FKMKHHLVGHMKIHTGIKPY 66

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 56.7 bits (138), Expect = 3e-12
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 14/85 (16%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
                      R + C+ C  +F     L +H + H    T E          + ++C 
Sbjct: 5  SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH----TGE----------KPYKCD 50

Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
           C +AF    +L  H R+HTG    
Sbjct: 51 ECGKAFIQRSHLIGHHRVHTGSGPS 75

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 57.5 bits (140), Expect = 4e-12
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 18/88 (20%)

Query: 5   LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
           LK H  VHT ++PF C    C   F L  +LR H ++H    T +          R + C
Sbjct: 50  LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH----TGD----------RPYVC 95

Query: 63  KV--CDRAFFDVYNLKLHMRIHTGEKKY 88
               C++ F    NLK H+  H   K  
Sbjct: 96  PFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 54.1 bits (131), Expect = 8e-11
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 17/86 (19%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          +++H+  H   R  VC  C   F     L++H  VH    T E          + FQC  
Sbjct: 23 MRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVH----TGE----------KPFQCTF 67

Query: 65 --CDRAFFDVYNLKLHMRIHTGEKKY 88
            C + F   +NL+ H+RIHTG++ Y
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPY 93

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 16 RPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 73
          R   C    C   F+    +R+H   H               +     C  C +AF +  
Sbjct: 4  RTIACPHKGCTKMFRDNSAMRKHLHTH-------------GPR--VHVCAECGKAFVESS 48

Query: 74 NLKLHMRIHTGEKKY 88
           LK H  +HTGEK +
Sbjct: 49 KLKRHQLVHTGEKPF 63

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 56.4 bits (137), Expect = 4e-12
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 18/85 (21%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+  HT ++PF C++C   F      ++H  +              H          
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-------------HIL--PILEDK 63

Query: 65 CDRAFFDVYNLKLH---MRIHTGEK 86
           +      Y+L+     ++   GE+
Sbjct: 64 VEELLSKNYHLENEVARLKKLVGER 88

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 15/73 (20%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 75
          +PF C +C   F    HL  H + H    T E          + F C +C R F      
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTH----TGE----------KPFACDICGRKFARSDER 47

Query: 76 KLHMRIHTGEKKY 88
          K H  I       
Sbjct: 48 KRHRDIQH-ILPI 59

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 57.8 bits (141), Expect = 7e-12
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
            L EH   HT ++P+ C  C  +F  KK L +H + H    T E          + ++C 
Sbjct: 36  HLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH----TGE----------KPYKCP 81

Query: 64  VCDRAFFDVYNLKLHMRIHTGEKKY 88
            C ++F    NL+ H R HTGEK Y
Sbjct: 82  ECGKSFSQRANLRAHQRTHTGEKPY 106

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 57.5 bits (140), Expect = 1e-11
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
            L+ H   HT ++P+ C  C  +F    HLR H + H    T E          + ++C 
Sbjct: 92  NLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH----TGE----------KPYKCP 137

Query: 64  VCDRAFFDVYNLKLHMRIHTGEKKY 88
            C ++F    NL  H R HTGEK Y
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPY 162

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 57.5 bits (140), Expect = 1e-11
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
               A+   ++P+ C  C  +F    HL +H + H    T E          + ++C  
Sbjct: 9  SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH----TGE----------KPYKCPE 54

Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
          C ++F D  +L  H R HTGEK Y
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKPY 78

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 55.9 bits (136), Expect = 4e-11
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 14/85 (16%)

Query: 2   KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
              L+ H   HT ++P+ C  C  +F  + +L  H + H    T E          + ++
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH----TGE----------KPYK 163

Query: 62  CKVCDRAFFDVYNLKLHMRIHTGEK 86
           C  C ++F     L +H R HTG+K
Sbjct: 164 CPECGKSFSRRDALNVHQRTHTGKK 188

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.0 bits (100), Expect = 5e-06
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 14/63 (22%)

Query: 26 TFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          +            +       E          + + C  C ++F    +L  H R HTGE
Sbjct: 2  SEFGSSSSVAQAALE----PGE----------KPYACPECGKSFSRSDHLAEHQRTHTGE 47

Query: 86 KKY 88
          K Y
Sbjct: 48 KPY 50

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 55.6 bits (135), Expect = 9e-12
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 13/83 (15%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H   H+ ++P+ C +C   FK K  +  H + H                 + + C+ 
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH------------DGSVGKPYICQS 70

Query: 65 CDRAFFDVYNLKLHM-RIHTGEK 86
          C + F    +L  H+ ++H+G  
Sbjct: 71 CGKGFSRPDHLNGHIKQVHSGPS 93

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 51.7 bits (125), Expect = 3e-10
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 14/76 (18%)

Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
           +      C +C   F+   HL +H   H    + E          + + C VC   F  
Sbjct: 2  SSGSSGVACEICGKIFRDVYHLNRHKLSH----SGE----------KPYSCPVCGLRFKR 47

Query: 72 VYNLKLHMRIHTGEKK 87
             +  H+R H G   
Sbjct: 48 KDRMSYHVRSHDGSVG 63

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 43.6 bits (104), Expect = 5e-07
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
            C++C + F DVY+L  H   H+GEK Y
Sbjct: 8  VACEICGKIFRDVYHLNRHKLSHSGEKPY 36

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 56.8 bits (138), Expect = 2e-11
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 4   QLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
            L  H   HT ++ F C+   C   F  K ++++H+                + KI  + 
Sbjct: 59  HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF------------HNIKICVYV 106

Query: 62  CKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
           C    C +AF     LK+H   HT +  Y
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPY 135

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 18/85 (21%)

Query: 8  HMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK-- 63
            A+    + ++C+   C + +     L+ H   H    T E          + F CK  
Sbjct: 3  EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH----TGE----------KPFPCKEE 48

Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
           C++ F  +++L  H   HTGEK +
Sbjct: 49 GCEKGFTSLHHLTRHSLTHTGEKNF 73

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 52.2 bits (126), Expect = 9e-10
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 4   QLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
           +L+ H+  HT ++PF C    C   F    HL +H   H    T E          ++F 
Sbjct: 29  KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH----TGE----------KNFT 74

Query: 62  CK--VCDRAFFDVYNLKLHMRIHTGEKK 87
           C    CD  F    N+K H       K 
Sbjct: 75  CDSDGCDLRFTTKANMKKHFNRFHNIKI 102

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 15/82 (18%)

Query: 4   QLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
           QLK H   HT   P+ C    C   F L   L++H KVH          K       D  
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH----AGYPCKK-------DDS 169

Query: 62  CKVCDRAFFDVYNLKLHMRIHT 83
           C    + +     LK     H 
Sbjct: 170 CSFVGKTW--TLYLKHVAECHQ 189

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 53.3 bits (129), Expect = 5e-11
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 17/81 (20%)

Query: 12 HTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK--VCDR 67
           +      C+   C   F  +++L  H              K  H   + F C    C +
Sbjct: 2  SSGSSGMPCDFPGCGRIFSNRQYLNHH-------------KKYQHIHQKSFSCPEPACGK 48

Query: 68 AFFDVYNLKLHMRIHTGEKKY 88
          +F    +LK HM++H+  + Y
Sbjct: 49 SFNFKKHLKEHMKLHSDTRDY 69

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 17/68 (25%)

Query: 5  LKEHM-AVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
          L  H    H   + F C    C  +F  KKHL++H K+H    +            RD+ 
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH----SDT----------RDYI 70

Query: 62 CKVCDRAF 69
          C+    + 
Sbjct: 71 CEFSGPSS 78

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 53.2 bits (129), Expect = 7e-11
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+ +H+  RP+ C  C   F  K  +++H  +H    T E          +  +C+V
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH----TGE----------KPHKCQV 62

Query: 65 CDRAFFDVYNLKLHMRIHTG 84
          C +AF    NL  H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 47.4 bits (114), Expect = 1e-08
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 14/71 (19%)

Query: 18 FVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 77
          F C +C  +FK    L  H  +H    +            R + C+ C + F    ++K 
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIH----SDT----------RPYPCQYCGKRFHQKSDMKK 47

Query: 78 HMRIHTGEKKY 88
          H  IHTGEK +
Sbjct: 48 HTFIHTGEKPH 58

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 24/95 (25%)

Query: 4  QLKEHMA---VHTTDRPFVCNMCPST-----FKLKKHLRQHYKVHLKMDTLENHMKAVHE 55
          QL  H+    +H   + FVC+    +     FK +  L  H + H    T E        
Sbjct: 18 QLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH----TGE-------- 65

Query: 56 KIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
            +  +C    C +++  + NLK H+R HTGEK Y
Sbjct: 66 --KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 25/103 (24%)

Query: 5   LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVH-----------------LKMDT 45
           L  HM  HT ++P  C    C  ++   ++L+ H + H                      
Sbjct: 55  LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114

Query: 46  LENHMKAVH--EKIRDFQCKV--CDRAFFDVYNLKLHMRIHTG 84
              H    H  EK   + CK+  C + + D  +L+ H++   G
Sbjct: 115 RAKHQNRTHSNEK--PYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 47.2 bits (113), Expect = 5e-08
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCD-----RAFF 70
               + C   F  ++ L  H                +H + ++F C         R F 
Sbjct: 2  TDCRWDGCSQEFDSQEQLVHHINSE-----------HIHGERKEFVCHWGGCSRELRPFK 50

Query: 71 DVYNLKLHMRIHTGEKKY 88
            Y L +HMR HTGEK +
Sbjct: 51 AQYMLVVHMRRHTGEKPH 68

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.0 bits (125), Expect = 1e-10
 Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 11/77 (14%)

Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
           +      C +C  T + K  L  H + H           A       F C+ C + F  
Sbjct: 2  SSGSSGLQCEICGFTCRQKASLNWHQRKH-----------AETVAALRFPCEFCGKRFEK 50

Query: 72 VYNLKLHMRIHTGEKKY 88
            ++  H          
Sbjct: 51 PDSVAAHRSKSHPALLL 67

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.9 bits (96), Expect = 3e-06
 Identities = 9/42 (21%), Positives = 11/42 (26%), Gaps = 3/42 (7%)

Query: 2  KRQLKEHMAVHTT---DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          K  L  H   H        F C  C   F+    +  H    
Sbjct: 20 KASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 52.2 bits (126), Expect = 2e-10
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 16/81 (19%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          LK H+  HT ++P+ C    C   F     L +HY+ H    T            + FQC
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH----TGA----------KPFQC 78

Query: 63 KVCDRAFFDVYNLKLHMRIHT 83
           VC+R+F    +L LHM+ H 
Sbjct: 79 GVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 42.6 bits (101), Expect = 1e-06
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +L  H   HT  +PF C +C  +F    HL  H K H
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.1 bits (97), Expect = 4e-06
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 18/77 (23%)

Query: 16 RPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC--KVCDRAFFD 71
          R   C+   C   +    HL+ H + H    T E          + ++C  + CD  F  
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTH----TGE----------KPYKCTWEGCDWRFAR 59

Query: 72 VYNLKLHMRIHTGEKKY 88
             L  H R HTG K +
Sbjct: 60 SDELTRHYRKHTGAKPF 76

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 54 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
           EK R   C    C + +    +LK H+R HTGEK Y
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY 46

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 49.5 bits (119), Expect = 1e-09
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 12/73 (16%)

Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
             +  + C +C   +    +  +HY                   ++ + C  C + F  
Sbjct: 5  KEGEHTYRCKVCSRVYTHISNFCRHYVTS------------HKRNVKVYPCPFCFKEFTR 52

Query: 72 VYNLKLHMRIHTG 84
            N+  H++I   
Sbjct: 53 KDNMTAHVKIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 50 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI--HTGEKKY 88
          M+   E    ++CKVC R +  + N   H         K Y
Sbjct: 1  MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVY 41

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.1 bits (87), Expect = 8e-05
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 5  LKEHM--AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
             H   +     + + C  C   F  K ++  H K+  K+
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 47.9 bits (115), Expect = 3e-09
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C++C   F  +  LK H+RIHTG    
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 49.1 bits (118), Expect = 3e-09
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 16/80 (20%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          LK H+  HT ++P+ C+   C   F     L +HY+ H    T            R FQC
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH----TGH----------RPFQC 68

Query: 63 KVCDRAFFDVYNLKLHMRIH 82
          + CDRAF    +L LHM+ H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.1 bits (105), Expect = 3e-07
 Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 16/79 (20%)

Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAF 69
           T         C  T+    HL+ H + H    T E          + + C    C   F
Sbjct: 2  RTATHTCDYAGCGKTYTKSSHLKAHLRTH----TGE----------KPYHCDWDGCGWKF 47

Query: 70 FDVYNLKLHMRIHTGEKKY 88
               L  H R HTG + +
Sbjct: 48 ARSDELTRHYRKHTGHRPF 66

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.7 bits (99), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 16/38 (42%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL 41
          +L  H   HT  RPF C  C   F    HL  H K H 
Sbjct: 52 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 47.5 bits (114), Expect = 6e-09
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 15/72 (20%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 75
          R FVC +C   F  ++HL++HY+ H    T E          + + C +C+RAF     L
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSH----TNE----------KPYPCGLCNRAFTRRDLL 46

Query: 76 KLHM-RIHTGEK 86
            H  +IH+G  
Sbjct: 47 IRHAQKIHSGNL 58

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 41.3 bits (98), Expect = 1e-06
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F C+VC RAF    +LK H R HT EK Y
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPY 31

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 46.2 bits (109), Expect = 3e-08
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 21/85 (24%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
             +   +H  DR   C+ C   F  +  L +                      +   C+
Sbjct: 5  SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR---------------------KTPMCE 43

Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
           C +       L       +G+K  
Sbjct: 44 KCRKDSCQEAALNKDEGNESGKKTS 68

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 44.1 bits (105), Expect = 8e-08
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C+ C   F  V +L+ H+ IHTG    
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
                 ++P+ C  C + F    HLR H  +H
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 11 VHTTDRPFVCNMCPSTFKLKKHLRQHY-KVHLKMDTLENHMKAVHEKIRDFQCKVCDRAF 69
          +           C  TF     L  H    H+      NH           +C    ++F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH------VCYWEECPREGKSF 72

Query: 70 FDVYNLKLHMRIHTGEK 86
             Y L  H+R+HTGEK
Sbjct: 73 KAKYKLVNHIRVHTGEK 89

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 43.8 bits (103), Expect = 2e-07
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          +   C++C + F DVY+L  H   H+GEK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 43.4 bits (103), Expect = 3e-07
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 18/81 (22%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          L  ++      RP+ C +  C   F     L +H ++H    T +          + FQC
Sbjct: 9  LLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIH----TGQ----------KPFQC 52

Query: 63 KVCDRAFFDVYNLKLHMRIHT 83
          ++C R F    +L  H+R HT
Sbjct: 53 RICMRNFSRSDHLTTHIRTHT 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +L  H+ +HT  +PF C +C   F    HL  H + H
Sbjct: 36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 37.7 bits (88), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 42 KMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
           M+ L N++     +   + C V  CDR F     L  H+RIHTG+K +
Sbjct: 5  PMNNLLNYVV-PKMR--PYACPVESCDRRFSRSDELTRHIRIHTGQKPF 50

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 41.9 bits (99), Expect = 7e-07
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C ++F    +L +H R  +     
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 43.2 bits (101), Expect = 8e-07
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFK----LKKHLR--QHYKVHLKMDTLENH-------- 49
             K + ++ T    F C  C + +     L  H+    HY+         N         
Sbjct: 6   SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65

Query: 50  -----MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR 80
                M+   +  +  +C  C  +F  + +L +HM 
Sbjct: 66  RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 41.0 bits (97), Expect = 1e-06
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C+ CD  F    +L+LH  +H GEK  
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPS 41

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 2e-06
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           +  E  + +QC  C ++F   Y L  H   HT EK  
Sbjct: 4  GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPS 41

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +    ++P+ C+ C  +F     L QH+  H
Sbjct: 3  SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 40.2 bits (95), Expect = 2e-06
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F C  C++AF     L +H + H  EK  
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPS 39

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 40.2 bits (95), Expect = 3e-06
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + F+C  C ++F    NL  H RIHTGEK  
Sbjct: 1  GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSG 41

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 34.1 bits (79), Expect = 7e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T  +PF C  C  +F+ K +L  H ++H
Sbjct: 3  SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 40.2 bits (95), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           +     R  +C  C + F    N   H RIHTGEK  
Sbjct: 4  GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPS 41

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 40.2 bits (95), Expect = 3e-06
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           QC  C R F    +L  H RIHTGEK  
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPS 41

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  ++ +   C+ C   F LK HL QH ++H
Sbjct: 3  SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C  C +AF D  NL  H +IHTGEK  
Sbjct: 1  GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS 41

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-06
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                      ++C  C +AF   Y L  H R H GEK  
Sbjct: 1  GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPS 41

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T + P+ C+ C   F  K  L  H + H
Sbjct: 3  SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 39.9 bits (94), Expect = 4e-06
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C+ C ++F    +L LH RIHTG    
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.9 bits (94), Expect = 4e-06
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          FQCK C   F    +L  H+R H      
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPS 41

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++PF C  C   F     L +H + H
Sbjct: 3  SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-06
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + + C VC +AF    +L  H+R+HT E   
Sbjct: 1  GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLS 41

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-05
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 7  EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
             +  T ++P+ CN+C   F L  HL QH +VH
Sbjct: 2  SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-06
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C VC +AF    +L +H RIH+G+K  
Sbjct: 1  GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 39.8 bits (94), Expect = 5e-06
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C+++F     L +H R+HT EK  
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPS 41

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 34.4 bits (80), Expect = 5e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +      P+ C+ C  +F  K  L  H ++H
Sbjct: 3  SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-06
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++CK C + F  + +L  H R+HTGE+  
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSS 41

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  +  +P+ C  C  TF    HL QH +VH
Sbjct: 3  SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-06
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + F+C +C ++F     L  H  +HT EK  
Sbjct: 1  GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS 41

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++PF C++C  +F  +  L +H  VH
Sbjct: 3  SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-06
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C VC +AF D  NL  H +IHTGEK  
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPS 41

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.4 bits (93), Expect = 6e-06
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C  C +AF    NL +H R HTGE   
Sbjct: 1  GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGP 41

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-06
 Identities = 15/29 (51%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F C  C +AF D   L  H RIHTGEK  
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPS 41

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.5 bits (93), Expect = 6e-06
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF    +L +H+R+HTG    
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 34.1 bits (79), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
                 ++P+ C+ C   F  K  L  H +VH
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-06
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C VC ++F    +L +H RIHTGEK  
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPS 41

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 7e-06
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C+ C + +    NL +H R+H GEK  
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTS 41

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 9e-04
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  + ++P+ C  C   +  + +L  H +VH
Sbjct: 3  SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 7e-06
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C+ C + +   +NL +H ++HTGE+  
Sbjct: 1  GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPS 41

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C VC +AF    +L  H R+H+GEK  
Sbjct: 1  GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPS 41

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + F+CK C +AF    +L  H+RIHTGEK  
Sbjct: 1  GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPS 41

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  + ++PF C  C   F+   HL  H ++H
Sbjct: 3  SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 8e-06
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           +C  C +AF     L +H R H  +K  
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHS 41

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P  C  C   F  K  L  H + H
Sbjct: 3  SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 8e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C +C ++F     L +H +IHTGEK  
Sbjct: 1  GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPS 41

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ C++C  +F  K  L  H ++H
Sbjct: 3  SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 9e-06
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + F+C  C +AF     L +H +IHTGEK  
Sbjct: 1  GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPS 41

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T  + F C  C   F  K  L  H K+H
Sbjct: 3  SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 39.7 bits (93), Expect = 9e-06
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 54 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYI 89
            +IR   C    C + +F   +LK H R HTGEK + 
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFS 49

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 18/85 (21%)

Query: 2  KRQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRD 59
                     +  R  +C+   C  T+    HL+ H + H    T E          + 
Sbjct: 2  SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH----TGE----------KP 47

Query: 60 FQCKV--CDRAFFDVYNLKLHMRIH 82
          F C    C+R F     L  H R H
Sbjct: 48 FSCSWKGCERRFARSDELSRHRRTH 72

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 9e-06
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C  C ++F     L +H RIHTGE   
Sbjct: 1  GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPS 41

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ C+ C  +F  K  L  H ++H
Sbjct: 3  SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C VC + F    +L+ H R+HTGEK  
Sbjct: 1  GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPS 41

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 5e-04
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +    ++ + C++C   F    HL+ H +VH
Sbjct: 3  SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F C  C + F    NL +H +IHTGE+  
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPS 41

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T + PF+C+ C   F  K +L  H K+H
Sbjct: 3  SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++CKVC +AF    +L  H + HTGEK  
Sbjct: 1  GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPS 41

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ C +C   F  K HL QH K H
Sbjct: 3  SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + F+C  C + F    +L +H RIHTGEK  
Sbjct: 1  GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPS 41

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +     + F CN C  TF     L  H ++H
Sbjct: 3  SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 7  EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
             +  T  + + CN C   F    HL +H K+H
Sbjct: 2  SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.4 bits (85), Expect = 8e-05
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + + C  C +AF  +++L  H +IHT +   
Sbjct: 1  GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGP 41

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    R ++C  C +AF     L +H RIHTGEK  
Sbjct: 1  GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPS 41

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 7  EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
             +  T +R + C+ C   F  K  L  H ++H
Sbjct: 2  SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 19/83 (22%)

Query: 4  QLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
          QLK H   HT   P+ C    C   F L   L++H K              VH      +
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK--------------VHAGYPCKK 63

Query: 62 CKVCDRAF--FDVYNLKLHMRIH 82
             C      + +Y LK     H
Sbjct: 64 DDSCSFVGKTWTLY-LKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 37.6 bits (88), Expect = 7e-05
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 18/75 (24%)

Query: 18 FVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVY 73
          +VC+   C   FK    L+ H   H    T +            ++C    CD+ F    
Sbjct: 2  YVCHFENCGKAFKKHNQLKVHQFSH----TQQ----------LPYECPHEGCDKRFSLPS 47

Query: 74 NLKLHMRIHTGEKKY 88
           LK H ++H G    
Sbjct: 48 RLKRHEKVHAGYPCK 62

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF     L +H + HTGE+  
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHS 41

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 13/62 (20%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDR 67
            +  +  +P++C  C   F    HL               H+K VH   R  +C+V   
Sbjct: 3  SGSSGSVGKPYICQSCGKGFSRPDHLNG-------------HIKQVHTSERPHKCQVWVS 49

Query: 68 AF 69
            
Sbjct: 50 GP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHM-RIHTGEKKY 88
           +     + + C+ C + F    +L  H+ ++HT E+ +
Sbjct: 4  GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH 42

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F+C  C +AF    NL +H R HTGEK  
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPS 41

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C  C +AF    NL  H RIHTGEK  
Sbjct: 1  GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ C  C   F  K +L QH ++H
Sbjct: 3  SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C ++F     L++H + HTGE+  
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHS 41

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ C+ C  +F  K  LR H K H
Sbjct: 3  SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F+C  C ++F     L  H RIHTGEK  
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPS 41

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 34.0 bits (79), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++PF C  C  +F +   L  H ++H
Sbjct: 3  SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF D  +   H R+HTG++  
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPS 41

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           +     R F+C  C + F    +L  H+R+H+ EK  
Sbjct: 4  GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSS 41

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 3e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  + +RPF CN C   F  + HL  H ++H
Sbjct: 3  SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + CK C ++F     L  H R+H+GEK  
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPS 41

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + + C  C +AF    NL  H +IHT +K  
Sbjct: 1  GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPS 41

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P++C  C   F ++ +L +H K+H
Sbjct: 3  SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C+ C + F    +L  H  +HTGEK  
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPS 41

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 42 KMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 87
          K   L+ H++  H  +R + C  C+ +F    NL  HM+     KK
Sbjct: 13 KPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 35.8 bits (82), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
             LK+H+  HT  RP+ C  C  +FK K +L +H K  
Sbjct: 14 PSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++CK C +AF    +L  H R+HTGEK  
Sbjct: 1  GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPS 41

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 34.4 bits (80), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ C  C   F    HL QH +VH
Sbjct: 3  SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF    NL  H  IHTGEK  
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPS 41

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + +    +L  H R+HTGEK  
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLS 41

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C +AF     L +HMR H+GEK  
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPS 41

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 6e-04
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +    ++P+ C+ C   F  K +L  H + H
Sbjct: 3  SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C  C +AF    +L  H  IHTG+K  
Sbjct: 1  GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS 41

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C+VC +AF    +L  H  +H+GE+  
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPS 41

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 8e-04
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 7  EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
             +  T ++P+ C +C   F++  HL QH+ VH
Sbjct: 2  SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C  C +AF    +L +H   H+GEK  
Sbjct: 1  GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPS 41

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F+C  C + F     L +H ++HTGEK  
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPS 41

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++PF C  C   F  +  L  H+K+H
Sbjct: 3  SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +  + ++P+ C  C  TF     L QH K+H
Sbjct: 3  SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C   F D   L  H ++HT +   
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGP 39

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          +QC  C +AF     L  H R+HTGEK  
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPS 41

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 9e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T  +P+ CN C   F     L +H +VH
Sbjct: 3  SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F+C+ C + F     L  H R+HTGEK  
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPS 41

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  + ++PF C  C   F     L  H +VH
Sbjct: 3  SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C  C + F    +L  H  IHTGEK  
Sbjct: 1  GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + CK C ++F     L  H R+H+GEK  
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPS 41

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F+C+ C + F+       H R H+GEK  
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPS 41

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C +AF    +L  H  IHTGEK  
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPS 41

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.6 bits (88), Expect = 3e-05
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
            C  C + F  +  L++H R+H GEK  
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCS 41

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.3 bits (82), Expect = 3e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  + ++   C+ C   F     LR H +VH
Sbjct: 3  SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C +AF     L  H RIHTGEK  
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPS 41

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  + ++P+VC+ C   F L   L +H ++H
Sbjct: 3  SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    + ++C  C + F    +L  H  IHTGEK  
Sbjct: 1  GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPS 41

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ C+ C   F+   HL +H  +H
Sbjct: 3  SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 37.5 bits (87), Expect = 3e-05
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +    + PF C+ C   F  + +L QH + H
Sbjct: 3  SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEK 86
          F+C  CDR F     L  H R H  + 
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKS 39

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C+ C +AF     L+ H RIHTGEK  
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPS 41

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C +AF     L +H R HTGE   
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGP 41

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T  +P+VCN C   F+ K +L  H + H
Sbjct: 3  SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + F     L  H +IHTGEK  
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPS 41

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++ + CN C   F     L QH K+H
Sbjct: 3  SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          F+C  C +++    +L  H R+HTGEK  
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPS 41

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++PF C  C  ++  + HL QH +VH
Sbjct: 3  SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 4e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF     L +H RIH GEK  
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPS 41

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 7  EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
             +  T +R + C+ C   F  K  L  H ++H
Sbjct: 2  SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 4e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          FQC+ C + F    +L  H R+HTGEK  
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPS 41

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 7  EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
             +  + ++PF C  C   F    HL  H +VH
Sbjct: 2  SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 4e-05
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C + F    +L  H++ H  EK  
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSS 41

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  + +RP+ CN C   F    HL +H K H
Sbjct: 3  SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    R ++C  C +AF    +L  H R HTGEK  
Sbjct: 1  GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPS 41

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.1 bits (79), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T  RP+ C  C   FK K  L  H + H
Sbjct: 3  SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + F     L  H RIHTGEK  
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPS 41

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ CN C   F+   +L +H ++H
Sbjct: 3  SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + F    +L  H RIHTG K  
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPS 41

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ CN C   F    HL  H ++H
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 5e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF     L  H RIHTGEK  
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPS 41

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 9e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P+ CN C   F     L +H ++H
Sbjct: 3  SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 5e-05
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
           +C+ C ++F     L +H RIHTGE   
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPS 41

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 36.7 bits (86), Expect = 6e-05
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C + F     L +H R HTG K  
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T  +P+ C+ C  TF LK  L  H + H
Sbjct: 3  SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-05
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
                    R  +C  C ++F    +L  H RIHTGEK  
Sbjct: 1  GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPS 41

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T +RP  CN C  +F    HL QH ++H
Sbjct: 3  SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-05
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C + F     L  H R HTGEK  
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPS 41

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  + ++P+ CN C  TF  K  L  H + H
Sbjct: 3  SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 36.9 bits (86), Expect = 6e-05
 Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 3/43 (6%)

Query: 48 NHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
          +         + F C    C   F     L  H R H+G K  
Sbjct: 2  SSGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPS 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-05
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF    +L  H RIHTG +  
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPS 41

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 7e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          + C  C ++F    +L  H RIHTGEK  
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPS 41

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T ++P++CN C  +F  K HL +H ++H
Sbjct: 3  SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF     L  H R H GE   
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGP 39

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + F    +L  H RIHTGEK  
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPS 41

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 9e-05
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + F    +L  H  IHTGEK  
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPS 41

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + F    +L  H  IHTGEK  
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPS 41

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
               T  +PF C  C  +F    HL  H K H+ +
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C +AF     L +H R H G    
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGP 41

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + F    +L  H R+HTG K  
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPS 41

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 45

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
           + ++P+ C +C   FK K  +  H + H
Sbjct: 5  SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.6 bits (81), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 42
          +    ++ F CN C  TF   K+L QH ++H +
Sbjct: 5  SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          ++C  C + F     L  H + H+G+   
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGP 41

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.0 bits (79), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
            +  T + P+ C  C   F  K  L  H K H
Sbjct: 3  SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
          R F C+VC RAF    +LK H R HT EK
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens} Length = 30

 Score = 34.7 bits (79), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
          ++ + C  C R F D   L+ H+RIHTGEK
Sbjct: 1  MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.92
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.9
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.89
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.88
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.88
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.87
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.87
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.85
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.85
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.83
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.83
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.82
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.81
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.8
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.79
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.78
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.78
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.75
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.75
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.74
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.71
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.71
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.71
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.71
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.71
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.7
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.7
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.7
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.69
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.69
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.68
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.68
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.67
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.66
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.66
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.66
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.66
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.66
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.66
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.65
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.65
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.65
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.64
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.64
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.64
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.63
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.62
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.62
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.62
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.61
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.61
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.61
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.61
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.6
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.56
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.56
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.55
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.54
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.53
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.52
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.5
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.5
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.49
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.48
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.48
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.47
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.47
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.47
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.47
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.47
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.47
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.47
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.46
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.46
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.46
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.46
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.46
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.45
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.44
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.44
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.44
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.43
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.42
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.41
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.41
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.41
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.41
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.41
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.41
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.4
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.4
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.4
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.4
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.39
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.39
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.39
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.39
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.39
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.38
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.38
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.38
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.38
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.38
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.38
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.37
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.37
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.36
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.35
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.35
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.34
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.34
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.34
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.34
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.33
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.32
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.32
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.31
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.31
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.3
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.3
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.29
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.28
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.28
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.27
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.26
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.26
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.26
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.25
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.25
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.21
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.21
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.21
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.19
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.18
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.17
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.16
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.15
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.14
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.13
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.12
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.12
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.11
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.03
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.03
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.0
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.96
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.95
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.95
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.93
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.91
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.82
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.81
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.8
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.74
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.73
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.7
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.7
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.69
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.69
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.69
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.69
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.67
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.66
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.64
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.64
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.64
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.63
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.62
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.62
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.03
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.6
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.59
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.58
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.99
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.97
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.95
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.54
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.54
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.53
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.52
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.92
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.5
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.48
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.46
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.46
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.46
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.43
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.39
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.35
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.35
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.69
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.33
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.28
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.27
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.25
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.25
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.24
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.22
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.21
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.76
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.56
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.18
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.02
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.61
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.54
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.0
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.84
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	95.07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.92
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	94.27
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	93.44
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	92.94
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	92.87
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.85
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	91.92
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	91.53
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	91.24
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	90.42
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	89.9
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	89.09
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	88.76
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	88.6
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	88.46
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	87.81
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	87.67
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	87.16
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	85.39
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	85.25
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	84.75
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	83.73
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	83.56
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	81.32
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	80.82
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	80.78

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=9.8e-27  Score=140.74  Aligned_cols=110  Identities=28%  Similarity=0.496  Sum_probs=94.1

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhc---------------ChhHHHHHHHHhhcCCCceeccccc
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTLENHMKAVHEKIRDFQCKVCD   66 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~---------------~~~~l~~h~~~~h~~~~~~~C~~c~   66 (115)
                      +..|..|++.|.++++|.|+.|++.|.....|..|++.|.               ....|..|++ .|.++++|.|+.|+
T Consensus        62 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~  140 (190)
T 2i13_A           62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECG  140 (190)
T ss_dssp             HHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHH-HHHCCCCEECTTTC
T ss_pred             HHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH-HhCCCCCeECCCCC
Confidence            3567888888888888888888888888888888887764               4667888888 78889999999999


Q ss_pred             ccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            67 RAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        67 ~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +.|.....|..|+++|.+++||.|++|++.|.....|..|+++|.+
T Consensus       141 ~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  186 (190)
T 2i13_A          141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG  186 (190)
T ss_dssp             CEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC--
T ss_pred             cccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999998875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=6.4e-28  Score=138.82  Aligned_cols=89  Identities=18%  Similarity=0.369  Sum_probs=81.3

Q ss_pred             HHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCce
Q psy64             9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY   88 (115)
Q Consensus         9 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~   88 (115)
                      ..+|+|++||.|++|+++|.....|..|+++              |.+++||.|+.|++.|.....|..|+.+|++++||
T Consensus        14 ~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   79 (133)
T 2lt7_A           14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNI--------------HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY   79 (133)
T ss_dssp             EEEETTEEEEEETTTCCEESCHHHHHHHHHH--------------HHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCE
T ss_pred             eeecCCCcCeECCCCCCCcCCHHHHHHHHHH--------------cCCCCCeeCCccCeecccccchhhhccccCCCccc
Confidence            3467899999999999999999999999884              47889999999999999999999999999999999


Q ss_pred             eEEeecceehhhhhhccCCcccc
Q psy64            89 IFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        89 ~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      .|++|++.|.....|..|+++|+
T Consensus        80 ~C~~C~k~F~~~~~L~~H~~~hh  102 (133)
T 2lt7_A           80 QCLACGKSFINYQFMSSHIKSVH  102 (133)
T ss_dssp             EESSSCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCCCcCCHHHHHHHhHHhc
Confidence            99999999999999999998875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.92  E-value=1.4e-25  Score=135.63  Aligned_cols=110  Identities=27%  Similarity=0.462  Sum_probs=97.5

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhc---------------ChhHHHHHHHHhhcCCCceeccccc
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL---------------KMDTLENHMKAVHEKIRDFQCKVCD   66 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~---------------~~~~l~~h~~~~h~~~~~~~C~~c~   66 (115)
                      +..|..|++.|.++++|.|+.|++.|.....|..|++.|.               ....|..|++ .|.++++|.|+.|+
T Consensus        34 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~  112 (190)
T 2i13_A           34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECG  112 (190)
T ss_dssp             SHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH-HHHTCCCEECTTTC
T ss_pred             HHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHH-hcCCCCCCcCCCCC
Confidence            3578899999999999999999999999999999998874               5678999998 78889999999999


Q ss_pred             ccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            67 RAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        67 ~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +.|.....|..|++.|.+++||.|+.|++.|.....|..|+++|.+
T Consensus       113 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A          113 KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999988764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=4.6e-25  Score=125.01  Aligned_cols=100  Identities=27%  Similarity=0.406  Sum_probs=88.6

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      +..|..|++.|.+++||.|+.|++.|.....|..|+..+.           .+.++++|.|+.|++.|.....|..|++.
T Consensus        20 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~-----------~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (124)
T 2dlq_A           20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC-----------MNRSEQVFTCSVCQETFRRRMELRLHMVS   88 (124)
T ss_dssp             HHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCC-----------CCSCCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhh-----------cCCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            4678889999988899999999999999988888877542           34678999999999999999999999999


Q ss_pred             hcCCCceeEEeecceehhhhhhccCCc-cccc
Q psy64            82 HTGEKKYIFIVVKKIIVVIYAKKFSLD-IEIL  112 (115)
Q Consensus        82 h~~~~~~~C~~C~~~~~~~~~~~~h~~-~h~~  112 (115)
                      |.+++||.|++|++.|.....|..|++ .|.+
T Consensus        89 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             cCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            999999999999999999999999987 4543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=3.6e-25  Score=124.69  Aligned_cols=95  Identities=29%  Similarity=0.530  Sum_probs=87.1

Q ss_pred             hHHHHHHHHhcCCCCCeecC--CChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM   79 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~   79 (115)
                      +..|..|++.|.+++||.|+  .|++.|.....|..|++.              |.++++|.|+.|++.|.....|..|+
T Consensus        21 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~C~~~f~~~~~l~~H~   86 (119)
T 2jp9_A           21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR--------------HTGVKPFQCKTCQRKFSRSDHLKTHT   86 (119)
T ss_dssp             HHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHH--------------HHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHH--------------cCCCCCccCCccCchhCCHHHHHHHH
Confidence            46788999999999999998  699999999988888874              46889999999999999999999999


Q ss_pred             HHhcCCCceeE--EeecceehhhhhhccCCccc
Q psy64            80 RIHTGEKKYIF--IVVKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        80 ~~h~~~~~~~C--~~C~~~~~~~~~~~~h~~~h  110 (115)
                      +.|.+++||.|  +.|++.|.....|..|+++|
T Consensus        87 ~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           87 RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999  89999999999999999876

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.90  E-value=1.8e-24  Score=130.75  Aligned_cols=111  Identities=26%  Similarity=0.409  Sum_probs=99.3

Q ss_pred             hHHHHHHHHhcCCCCCeec--CCChhhccChhhHHHHHHHhc-----------------ChhHHHHHHHHhh-cCCCcee
Q psy64             2 KRQLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVHL-----------------KMDTLENHMKAVH-EKIRDFQ   61 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C--~~C~~~~~~~~~l~~h~~~h~-----------------~~~~l~~h~~~~h-~~~~~~~   61 (115)
                      +..|..|++.|.+++||.|  +.|++.|.....|..|++.|.                 ....|..|++..| .++++|.
T Consensus        27 ~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  106 (190)
T 1tf6_A           27 NWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV  106 (190)
T ss_dssp             HHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCE
T ss_pred             HHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceee
Confidence            4678999999999999999  889999999999999998875                 4667889986577 5788999


Q ss_pred             c--ccccccccChhhHHHHHHHhcCCCceeEEe--ecceehhhhhhccCCccccc
Q psy64            62 C--KVCDRAFFDVYNLKLHMRIHTGEKKYIFIV--VKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        62 C--~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~~~~h~~~h~~  112 (115)
                      |  +.|++.|.....|..|+++|++++||.|+.  |++.|.....|..|+++|.+
T Consensus       107 C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             ECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            9  889999999999999999999999999988  99999999999999999875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=6.5e-24  Score=115.52  Aligned_cols=87  Identities=24%  Similarity=0.454  Sum_probs=81.5

Q ss_pred             cCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        12 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      ..+++||.|++|++.|.....|..|++.              |.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   68 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC--------------HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ   68 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGG--------------CCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHh--------------cCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCC
Confidence            5678999999999999999999999874              46789999999999999999999999999999999999


Q ss_pred             eecceehhhhhhccCCccccc
Q psy64            92 VVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        92 ~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +|++.|.....|..|+++|.+
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           69 ICPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             SSSCEESSHHHHHHHHTTCCS
T ss_pred             CCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=8e-24  Score=120.02  Aligned_cols=96  Identities=28%  Similarity=0.504  Sum_probs=86.7

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc--ccccccChhhHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHM   79 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~--c~~~~~~~~~l~~h~   79 (115)
                      +..|..|++.| ++++|.|++|++.|.....|..|++.              |.++++|.|+.  |++.|.....|..|+
T Consensus        20 ~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~~~C~~~f~~~~~l~~H~   84 (124)
T 1ubd_C           20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV--------------HTGEKPFQCTFEGCGKRFSLDFNLRTHV   84 (124)
T ss_dssp             HHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGG--------------TSCCCCEECCSTTCCCEESCHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHH--------------cCCCCCeeCCCCCCcCccCCHHHHHHHH
Confidence            46789999998 88899999999999999999888774              47889999985  999999999999999


Q ss_pred             HHhcCCCceeEE--eecceehhhhhhccCCccccc
Q psy64            80 RIHTGEKKYIFI--VVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        80 ~~h~~~~~~~C~--~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +.|.++++|.|+  .|++.|.....|..|+++|.+
T Consensus        85 ~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           85 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             HHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             HHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            999999999996  599999999999999998875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.89  E-value=1.1e-23  Score=113.26  Aligned_cols=85  Identities=28%  Similarity=0.574  Sum_probs=78.4

Q ss_pred             CCCCeecC--CChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            14 TDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        14 ~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      |++||.|+  .|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|+..|.+++||.|+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHH--------------HCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHh--------------CCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCC
Confidence            46899998  6999999999999998854              6789999999999999999999999999999999999


Q ss_pred             eecceehhhhhhccCCccccc
Q psy64            92 VVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        92 ~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|++.|.....|..|+++|.+
T Consensus        67 ~C~~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           67 ICGRKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             TTCCEESSHHHHHHHHGGGGC
T ss_pred             CCCchhCCHHHHHHHHHHhcc
Confidence            999999999999999999975

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.88  E-value=8e-24  Score=111.98  Aligned_cols=82  Identities=27%  Similarity=0.425  Sum_probs=76.6

Q ss_pred             CeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      ||.|++|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|+..|.++++|.|++|++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   66 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIH--------------SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKA   66 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH--------------HTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCE
T ss_pred             CccCCCCcccccCchhHHHHHHHc--------------CCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchh
Confidence            689999999999999999998854              678999999999999999999999999999999999999999


Q ss_pred             ehhhhhhccCCccccc
Q psy64            97 IVVIYAKKFSLDIEIL  112 (115)
Q Consensus        97 ~~~~~~~~~h~~~h~~  112 (115)
                      |.....|..|+++|.+
T Consensus        67 f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           67 FSQSSNLITHSRKHTG   82 (82)
T ss_dssp             ESSHHHHHHHHHHHC-
T ss_pred             hCChHHHHHHHHhhCC
Confidence            9999999999998853

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=7.1e-23  Score=117.73  Aligned_cols=86  Identities=21%  Similarity=0.490  Sum_probs=77.8

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      +++|..|+++|++++||.|++|+++|.....|..|+++              |.+++||.|+.||+.|.....|..|+++
T Consensus        35 ~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~C~k~F~~~~~L~~H~~~  100 (133)
T 2lt7_A           35 LTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH--------------HTGERRYQCLACGKSFINYQFMSSHIKS  100 (133)
T ss_dssp             HHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHH--------------HHTCCCEEESSSCCEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccc--------------cCCCccccCCCCCCCcCCHHHHHHHhHH
Confidence            57899999999999999999999999999999999874              4789999999999999999999999999


Q ss_pred             hcCC------CceeEEeecceehhhh
Q psy64            82 HTGE------KKYIFIVVKKIIVVIY  101 (115)
Q Consensus        82 h~~~------~~~~C~~C~~~~~~~~  101 (115)
                      ++++      ++|.|..|++.|....
T Consensus       101 hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A          101 VHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             HTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             hcCCCCCCCCCCeecCCCCchhhhcc
Confidence            8765      4599999999886543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.8e-23  Score=122.54  Aligned_cols=110  Identities=24%  Similarity=0.428  Sum_probs=92.8

Q ss_pred             hHHHHHHHH---hcCCCCCeecCC-----ChhhccChhhHHHHHHHhc-----------------ChhHHHHHHHHhhcC
Q psy64             2 KRQLKEHMA---VHTTDRPFVCNM-----CPSTFKLKKHLRQHYKVHL-----------------KMDTLENHMKAVHEK   56 (115)
Q Consensus         2 k~~l~~h~~---~h~~~~~~~C~~-----C~~~~~~~~~l~~h~~~h~-----------------~~~~l~~h~~~~h~~   56 (115)
                      +.+|..|++   .|.++++|.|+.     |++.|.....|..|++.|.                 ....|..|++ .|.+
T Consensus        16 ~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~   94 (155)
T 2gli_A           16 QEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTG   94 (155)
T ss_dssp             HHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHH-HTTT
T ss_pred             HHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHH-HcCC
Confidence            467888887   577788888764     3478888888888887764                 3456778887 6889


Q ss_pred             CCceeccc--ccccccChhhHHHHH-HHhcCCCceeEEe--ecceehhhhhhccCCccccc
Q psy64            57 IRDFQCKV--CDRAFFDVYNLKLHM-RIHTGEKKYIFIV--VKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        57 ~~~~~C~~--c~~~~~~~~~l~~h~-~~h~~~~~~~C~~--C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +++|.|+.  |++.|.....|..|+ ..|.+++||.|++  |++.|.....|..|+++|++
T Consensus        95 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            99999998  999999999999998 8899999999998  99999999999999998864

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.88  E-value=2.1e-23  Score=116.17  Aligned_cols=87  Identities=25%  Similarity=0.389  Sum_probs=81.5

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      .|++++||.| .|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|++.|.++++|.|
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   68 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMH--------------LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC   68 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHH--------------SCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEEC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHc--------------CCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeC
Confidence            5789999999 9999999999999998854              678999999999999999999999999999999999


Q ss_pred             EeecceehhhhhhccCCccccc
Q psy64            91 IVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        91 ~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ++|++.|.....|..|+++|..
T Consensus        69 ~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           69 NICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             SSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCcchhcCHHHHHHHHHHccc
Confidence            9999999999999999988764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=1.9e-25  Score=125.37  Aligned_cols=98  Identities=10%  Similarity=0.021  Sum_probs=86.3

Q ss_pred             HHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCce-ecccccccc--cChhhHHHHH
Q psy64             3 RQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF-QCKVCDRAF--FDVYNLKLHM   79 (115)
Q Consensus         3 ~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~-~C~~c~~~~--~~~~~l~~h~   79 (115)
                      +.|..|+++|++++||.|++|++.|.....|..|++.+            .+.+.+++ .|+.|++.|  .....|..|+
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~------------~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~   72 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET------------GHYRDDNHETDNNNPKRWSKPRKRSLLEME   72 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHT------------CCCBCSCCCCCCCCCSCCSSCCCCCCCCCC
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHh------------CccccCCCccCCCCCcccccccHHHHHHHh
Confidence            35678899999999999999999999999999998851            13455555 599999999  8889999999


Q ss_pred             HHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            80 RIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        80 ~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ++|.+++||.|++|++.|.....|..|++.|..
T Consensus        73 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           73 GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             hccCCCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            999999999999999999999999999988754

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=8.7e-23  Score=110.80  Aligned_cols=86  Identities=22%  Similarity=0.351  Sum_probs=79.6

Q ss_pred             CCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCC--CceeE
Q psy64            13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE--KKYIF   90 (115)
Q Consensus        13 ~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~--~~~~C   90 (115)
                      +++++|.|++|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|++.|.++  ++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C   68 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSH--------------SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC   68 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHS--------------CSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhc--------------CCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceEC
Confidence            5789999999999999999999998854              6889999999999999999999999999987  99999


Q ss_pred             EeecceehhhhhhccCCc-cccc
Q psy64            91 IVVKKIIVVIYAKKFSLD-IEIL  112 (115)
Q Consensus        91 ~~C~~~~~~~~~~~~h~~-~h~~  112 (115)
                      ++|++.|.....|..|++ .|.+
T Consensus        69 ~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           69 QSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             CCccchhCCHHHHHHHHHHhcCC
Confidence            999999999999999986 7754

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.87  E-value=4.5e-23  Score=114.05  Aligned_cols=88  Identities=23%  Similarity=0.407  Sum_probs=81.3

Q ss_pred             cCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        12 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      ..++++|.|++|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   77 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTH--------------TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ   77 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHH--------------CCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCS
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHc--------------CCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECC
Confidence            35678999999999999999999998744              6789999999999999999999999999999999999


Q ss_pred             eecceehhhhhhccCCcccccc
Q psy64            92 VVKKIIVVIYAKKFSLDIEILC  113 (115)
Q Consensus        92 ~C~~~~~~~~~~~~h~~~h~~~  113 (115)
                      +|++.|.....|..|+++|...
T Consensus        78 ~C~~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           78 ECGKGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             SSCCCCSSHHHHHHHHHHTTSC
T ss_pred             CcCCcccCHHHHHHHHHHhCCC
Confidence            9999999999999999998753

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.87  E-value=1.9e-22  Score=118.33  Aligned_cols=96  Identities=27%  Similarity=0.433  Sum_probs=80.3

Q ss_pred             HHHHHHHHh-cCCCCC--------eecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc--ccccccC
Q psy64             3 RQLKEHMAV-HTTDRP--------FVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAFFD   71 (115)
Q Consensus         3 ~~l~~h~~~-h~~~~~--------~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~--c~~~~~~   71 (115)
                      .+|..|++. |.++.+        |.|++|++.|.....|..|++              .|.++++|.|..  |++.|..
T Consensus        39 ~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~--------------~h~~~~~~~C~~~~C~~~f~~  104 (155)
T 2rpc_A           39 HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR--------------VHTGEKPFPCPFPGCGKIFAR  104 (155)
T ss_dssp             HHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTH--------------HHHCCCSEECSCTTTCCEESC
T ss_pred             HHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHH--------------hcCCCCcccCCcCCCCCccCC
Confidence            466677765 655544        567777777777777766665              457889999998  9999999


Q ss_pred             hhhHHHHHHHhcCCCceeEEe--ecceehhhhhhccCCccccc
Q psy64            72 VYNLKLHMRIHTGEKKYIFIV--VKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        72 ~~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ...|..|++.|.+++||.|++  |++.|.....|..|+++|.+
T Consensus       105 ~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~  147 (155)
T 2rpc_A          105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS  147 (155)
T ss_dssp             HHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTS
T ss_pred             HHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999999997  99999999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=2.9e-23  Score=115.13  Aligned_cols=88  Identities=11%  Similarity=0.141  Sum_probs=80.1

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      +++.|++++||.|++|++.|.....|..|++.|                .++|.|+.|++.|.....|..|+. |.+++|
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H----------------~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~   69 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC----------------RNAAVCPYCSLRFFSPELKQEHES-KCEYKK   69 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH----------------HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGG
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHC----------------CCCccCCCCCCccCCHHHHHHHHH-cCCCCC
Confidence            456789999999999999999999999998865                258999999999999999999995 999999


Q ss_pred             eeEEeecceehhhhhhccCCc-cccc
Q psy64            88 YIFIVVKKIIVVIYAKKFSLD-IEIL  112 (115)
Q Consensus        88 ~~C~~C~~~~~~~~~~~~h~~-~h~~  112 (115)
                      |.|++|++.|.....|..|++ .|..
T Consensus        70 ~~C~~C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           70 LTCLECMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             ccCccccchhCCHHHHHHHHHHHcCC
Confidence            999999999999999999997 7754

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.85  E-value=9.2e-22  Score=118.86  Aligned_cols=107  Identities=23%  Similarity=0.381  Sum_probs=97.3

Q ss_pred             hHHHHHHHHhcCCCCCeecC--CChhhccChhhHHHHH-HHhc------------------ChhHHHHHHHHhhcCCCce
Q psy64             2 KRQLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHY-KVHL------------------KMDTLENHMKAVHEKIRDF   60 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~-~~h~------------------~~~~l~~h~~~~h~~~~~~   60 (115)
                      +..|..|++.|.+++||.|+  .|++.|.....|..|+ +.|.                  ....|..|++ .|.+++||
T Consensus        57 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~  135 (190)
T 1tf6_A           57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPY  135 (190)
T ss_dssp             HHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHG-GGSSSCSS
T ss_pred             HHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHH-HhCCCCCc
Confidence            46899999999999999999  8999999999999998 4441                  4577999998 79999999


Q ss_pred             eccc--ccccccChhhHHHHHHHhcCCCceeEEe---ecceehhhhhhccCCccccc
Q psy64            61 QCKV--CDRAFFDVYNLKLHMRIHTGEKKYIFIV---VKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        61 ~C~~--c~~~~~~~~~l~~h~~~h~~~~~~~C~~---C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|+.  |++.|.....|..|+++|++   |.|..   |++.|.....|..|+++|.+
T Consensus       136 ~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          136 ECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             BCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             cCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            9988  99999999999999999998   99999   99999999999999999874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.85  E-value=8.2e-22  Score=105.71  Aligned_cols=84  Identities=19%  Similarity=0.411  Sum_probs=77.2

Q ss_pred             CCCCeecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc--cccccccChhhHHHHHHHhcCCCcee
Q psy64            14 TDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKYI   89 (115)
Q Consensus        14 ~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~~~~   89 (115)
                      ...+|.|+.  |++.|.....|..|++.              |.++++|.|+  .|++.|.....|..|++.|.+++||.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~   67 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRT--------------HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ   67 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTT--------------SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEE
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHh--------------cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCcc
Confidence            356899999  99999999999999874              4788999997  69999999999999999999999999


Q ss_pred             EEeecceehhhhhhccCCcccc
Q psy64            90 FIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        90 C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      |+.|++.|.....|..|+++|+
T Consensus        68 C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           68 CQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CSSSSCEESSHHHHHHHGGGGC
T ss_pred             CCCCCcccCCHHHHHHHHHhhC
Confidence            9999999999999999999884

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.85  E-value=2.8e-22  Score=100.22  Aligned_cols=56  Identities=21%  Similarity=0.253  Sum_probs=54.5

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ++||+|.+||+.|...+.|..|+++|++++||.|++|++.|.....|..|+++|.+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCC
Confidence            68999999999999999999999999999999999999999999999999999975

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=1.4e-21  Score=109.88  Aligned_cols=86  Identities=27%  Similarity=0.438  Sum_probs=79.9

Q ss_pred             CCCCCeecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc--cccccccChhhHHHHHHHhcCCCce
Q psy64            13 TTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKY   88 (115)
Q Consensus        13 ~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~~~   88 (115)
                      ++++||.|+.  |++.|.....|..|++.|              .++++|.|+  .|++.|.....|..|++.|.++++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   67 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH--------------TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF   67 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHH--------------HTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhh--------------CCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCc
Confidence            5789999997  999999999999998854              678999999  7999999999999999999999999


Q ss_pred             eEEeecceehhhhhhccCCccccc
Q psy64            89 IFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        89 ~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|++|++.|.....|..|+++|.+
T Consensus        68 ~C~~C~~~f~~~~~l~~H~~~h~~   91 (119)
T 2jp9_A           68 QCKTCQRKFSRSDHLKTHTRTHTG   91 (119)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHT
T ss_pred             cCCccCchhCCHHHHHHHHHHhcC
Confidence            999999999999999999998764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.83  E-value=4.4e-21  Score=95.86  Aligned_cols=58  Identities=29%  Similarity=0.690  Sum_probs=54.3

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCC
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      |+||.|++||++|.....|..|+++              |++++||.|++||+.|...+.|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~--------------Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRA--------------HLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH--------------HHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHH--------------hCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            7999999999999999999999984              589999999999999999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.83  E-value=2.3e-21  Score=105.99  Aligned_cols=86  Identities=22%  Similarity=0.405  Sum_probs=78.6

Q ss_pred             CCCCCeecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc--cccccccChhhHHHHHHHhcCCCce
Q psy64            13 TTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKY   88 (115)
Q Consensus        13 ~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~~~   88 (115)
                      ..+++|.|..  |++.|.....|..|++.|              .++++|.|+  .|++.|.....|..|++.|.+++||
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   76 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTH--------------TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF   76 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHH--------------SCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSC
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHh--------------CCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCe
Confidence            3467899997  999999999999998844              678999996  6999999999999999999999999


Q ss_pred             eEEeecceehhhhhhccCCccccc
Q psy64            89 IFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        89 ~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|++|++.|.....|..|+++|.+
T Consensus        77 ~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           77 QCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             ECCCCcCccCCHHHHHHHHHHhCC
Confidence            999999999999999999998863

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=9.9e-21  Score=110.86  Aligned_cols=97  Identities=24%  Similarity=0.359  Sum_probs=86.9

Q ss_pred             CCCeecCCChhhccChhhHHHHHHH---hc--------------------ChhHHHHHHHHhhcCCCceeccc--ccccc
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKV---HL--------------------KMDTLENHMKAVHEKIRDFQCKV--CDRAF   69 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~---h~--------------------~~~~l~~h~~~~h~~~~~~~C~~--c~~~~   69 (115)
                      |.+|.|+.|++.|.+...|..|++.   |.                    ....|..|++ .|.++++|.|+.  |++.|
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f   79 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSY   79 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTH-HHHCCCCCCCCSTTCCCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHH-hcCCCCCccCCCCCCCCcc
Confidence            4689999999999999999999973   32                    3456889988 788999999985  99999


Q ss_pred             cChhhHHHHHHHhcCCCceeEEe--ecceehhhhhhccCC-ccccc
Q psy64            70 FDVYNLKLHMRIHTGEKKYIFIV--VKKIIVVIYAKKFSL-DIEIL  112 (115)
Q Consensus        70 ~~~~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~~~~h~-~~h~~  112 (115)
                      .....|..|++.|.+++||.|++  |++.|.....|..|+ ++|..
T Consensus        80 ~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  125 (155)
T 2gli_A           80 SRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN  125 (155)
T ss_dssp             SSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            99999999999999999999998  999999999999998 77764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=5.4e-21  Score=108.12  Aligned_cols=86  Identities=19%  Similarity=0.315  Sum_probs=79.2

Q ss_pred             CCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHH---hcCCCcee
Q psy64            13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI---HTGEKKYI   89 (115)
Q Consensus        13 ~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~---h~~~~~~~   89 (115)
                      +++++|.|++|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|+..   +.++++|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~   68 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKH--------------TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT   68 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHH--------------SSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEE
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhC--------------CCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeE
Confidence            5789999999999999999999998854              678999999999999999999999985   57899999


Q ss_pred             EEeecceehhhhhhccCCccccc
Q psy64            90 FIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        90 C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      |++|++.|.....|..|+++|..
T Consensus        69 C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           69 CSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CCCCCCccCCHHHHHHHHHHcCC
Confidence            99999999999999999998864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.82  E-value=4.8e-22  Score=106.67  Aligned_cols=85  Identities=24%  Similarity=0.391  Sum_probs=77.4

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeec
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVK   94 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~   94 (115)
                      ++||.|++|++.|.....|..|++.|              .+++||.|+.|++.|.....|..|+..+.+ .+|.|+.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H--------------~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~   65 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTH--------------TGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVE   65 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH--------------HCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHc--------------CCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHH
Confidence            57999999999999999999998844              688999999999999999999999999984 889999999


Q ss_pred             ceehhhhhhccCCccccccc
Q psy64            95 KIIVVIYAKKFSLDIEILCV  114 (115)
Q Consensus        95 ~~~~~~~~~~~h~~~h~~~~  114 (115)
                      +.|.....|..|++.++...
T Consensus        66 ~~f~~~~~L~~H~~~~h~~~   85 (88)
T 1llm_C           66 ELLSKNYHLENEVARLKKLV   85 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhHHHHHHHHHHh
Confidence            99999999999998765543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=4.8e-20  Score=96.79  Aligned_cols=73  Identities=25%  Similarity=0.470  Sum_probs=66.7

Q ss_pred             CCCCCeecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc--ccccccChhhHHHHHHHhcCCCce
Q psy64            13 TTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY   88 (115)
Q Consensus        13 ~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~--c~~~~~~~~~l~~h~~~h~~~~~~   88 (115)
                      +++++|.|..  |++.|.....|..|++.             .|.++++|.|+.  |++.|.....|..|+++|++++||
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~-------------~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~   69 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKY-------------QHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY   69 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHH-------------GGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHH-------------HhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCe
Confidence            5788999997  99999999999999872             246889999999  999999999999999999999999


Q ss_pred             eEEeecceeh
Q psy64            89 IFIVVKKIIV   98 (115)
Q Consensus        89 ~C~~C~~~~~   98 (115)
                      .|++|++.|.
T Consensus        70 ~C~~C~k~F~   79 (79)
T 2dlk_A           70 ICEFSGPSSG   79 (79)
T ss_dssp             SCCSSSCCCC
T ss_pred             eCCCCCCCCC
Confidence            9999999883

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.5e-20  Score=100.12  Aligned_cols=81  Identities=21%  Similarity=0.340  Sum_probs=72.6

Q ss_pred             HHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcC---CCceecccccccccChhhHHHHHH
Q psy64             4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEK---IRDFQCKVCDRAFFDVYNLKLHMR   80 (115)
Q Consensus         4 ~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~---~~~~~C~~c~~~~~~~~~l~~h~~   80 (115)
                      ++.+|+++|++++||.|++|++.|.....|..|++.++             ..   .++|.|..|++.|.....|..|++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~-------------~~~~~~~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH-------------DPNFVPAAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTT-------------CSSCCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhc-------------CCcCCCcceECCCCCChhCCHHHHHHHHH
Confidence            35678999999999999999999999999999987552             22   278999999999999999999999


Q ss_pred             HhcCCCceeEEeeccee
Q psy64            81 IHTGEKKYIFIVVKKII   97 (115)
Q Consensus        81 ~h~~~~~~~C~~C~~~~   97 (115)
                      .|.+++++.|+.|+..+
T Consensus        69 ~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           69 NCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HCCCCCSCCCCCCCCCC
T ss_pred             HccCCCCcccCCCCCCC
Confidence            99999999999999765

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=1.9e-19  Score=98.91  Aligned_cols=72  Identities=18%  Similarity=0.344  Sum_probs=63.3

Q ss_pred             cCCCCCeecCCChhhccChhhHHHHHHH-hcChhHHHHHHHHhh-cCCCceecccccccccChhhHHHH-HHHhcCCCce
Q psy64            12 HTTDRPFVCNMCPSTFKLKKHLRQHYKV-HLKMDTLENHMKAVH-EKIRDFQCKVCDRAFFDVYNLKLH-MRIHTGEKKY   88 (115)
Q Consensus        12 h~~~~~~~C~~C~~~~~~~~~l~~h~~~-h~~~~~l~~h~~~~h-~~~~~~~C~~c~~~~~~~~~l~~h-~~~h~~~~~~   88 (115)
                      -+|++||.|++|+++|.....|..|++. |.            . .+++||.|..||+.|.....|..| +++|++++||
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~------------~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy   80 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHP------------NVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENF   80 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCS------------SCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCC------------CCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCe
Confidence            3688999999999999999999999863 31            1 468999999999999999999999 8999999999


Q ss_pred             eEEeecc
Q psy64            89 IFIVVKK   95 (115)
Q Consensus        89 ~C~~C~~   95 (115)
                      .|.++..
T Consensus        81 ~C~~~~~   87 (102)
T 2ghf_A           81 KLTMVKR   87 (102)
T ss_dssp             EEEECCC
T ss_pred             eCCcccC
Confidence            9998554

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.78  E-value=5.4e-20  Score=104.14  Aligned_cols=84  Identities=26%  Similarity=0.463  Sum_probs=75.3

Q ss_pred             CCCCeecC--CChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            14 TDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        14 ~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .+++|.|+  .|++.|.....|..|++              .| +.++|.|+.|++.|.....|..|+..|.++++|.|+
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~--------------~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   66 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLH--------------TH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT   66 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHG--------------GG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHH--------------Hc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCC
Confidence            35789999  89999999999999986              34 678999999999999999999999999999999998


Q ss_pred             e--ecceehhhhhhccCCccccc
Q psy64            92 V--VKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        92 ~--C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .  |++.|.....|..|+++|.+
T Consensus        67 ~~~C~~~f~~~~~l~~H~~~h~~   89 (124)
T 1ubd_C           67 FEGCGKRFSLDFNLRTHVRIHTG   89 (124)
T ss_dssp             STTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCCCcCccCCHHHHHHHHHHhCC
Confidence            6  99999999999999988864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.78  E-value=9.9e-20  Score=96.61  Aligned_cols=78  Identities=23%  Similarity=0.341  Sum_probs=72.4

Q ss_pred             Ceec--CCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc--ccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            17 PFVC--NMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        17 ~~~C--~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~--c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      ||.|  +.|++.|.....|..|++.|              .++++|+|+.  |++.|.....|..|+++|++   |.|+.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~   63 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSH--------------TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKK   63 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH--------------HTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHh--------------CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCC
Confidence            6899  99999999999999998754              6789999988  99999999999999999998   99999


Q ss_pred             ---ecceehhhhhhccCCcccc
Q psy64            93 ---VKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        93 ---C~~~~~~~~~~~~h~~~h~  111 (115)
                         |++.|.....|..|+++|+
T Consensus        64 ~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           64 DDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCccCCHHHHHHHHHhcC
Confidence               9999999999999998774

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=8.4e-19  Score=91.68  Aligned_cols=66  Identities=26%  Similarity=0.536  Sum_probs=57.1

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      .+.+++||.|++|++.|.....|..|++.              |.++++|.|+.|++.|.....|..|+++|++++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRT--------------HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTT--------------TCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHH--------------cCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            35678899999999999999888888874              4678899999999999999999999999999999887

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.75  E-value=9.1e-19  Score=102.55  Aligned_cols=87  Identities=23%  Similarity=0.261  Sum_probs=77.5

Q ss_pred             CCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCc--------eecccccccccChhhHHHHHHHhcC
Q psy64            13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRD--------FQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        13 ~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~--------~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      ..+.+|.|+.|++.|.....|..|++.+             |.+.++        |.|+.|++.|.....|..|++.|.+
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~-------------H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTME-------------HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTT-------------TSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhh-------------cCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCC
Confidence            4567899999999999999999999862             233333        7999999999999999999999999


Q ss_pred             CCceeEEe--ecceehhhhhhccCCccccc
Q psy64            85 EKKYIFIV--VKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        85 ~~~~~C~~--C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +++|.|+.  |++.|.....|..|+++|..
T Consensus        88 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  117 (155)
T 2rpc_A           88 EKPFPCPFPGCGKIFARSENLKIHKRTHTG  117 (155)
T ss_dssp             CCSEECSCTTTCCEESCHHHHHHHHTTTCS
T ss_pred             CCcccCCcCCCCCccCCHHHHHHHHHhhCC
Confidence            99999998  99999999999999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=2.6e-18  Score=94.77  Aligned_cols=75  Identities=29%  Similarity=0.653  Sum_probs=69.3

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      +..|..|++.|.++++|.|++|++.|.....|..|++.              |.++++|.|..|++.|.....|..|+++
T Consensus        30 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~C~~~f~~~~~L~~H~~~   95 (106)
T 2ee8_A           30 SYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI--------------HSKEKPFKCQECGKGFCQSRTLAVHKTL   95 (106)
T ss_dssp             HHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGG--------------SCCCCTTSCSSSCCCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHH--------------hCCCCCeECCCcCCcccCHHHHHHHHHH
Confidence            46899999999999999999999999999999999874              4788999999999999999999999999


Q ss_pred             hcCCCceeE
Q psy64            82 HTGEKKYIF   90 (115)
Q Consensus        82 h~~~~~~~C   90 (115)
                      |.+++||.+
T Consensus        96 H~~~~~~~~  104 (106)
T 2ee8_A           96 HMQTSSPTA  104 (106)
T ss_dssp             TTSCCCCCC
T ss_pred             hCCCCCCcC
Confidence            999999864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.74  E-value=5.7e-18  Score=90.71  Aligned_cols=71  Identities=32%  Similarity=0.699  Sum_probs=64.6

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      +..|..|++.|.++++|.|+.|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|+++
T Consensus        19 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~   84 (90)
T 1a1h_A           19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--------------TGEKPFACDICGRKFARSDERKRHTKI   84 (90)
T ss_dssp             HHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH--------------HCCCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             HHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHc--------------CCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999999999999999998744              688999999999999999999999999


Q ss_pred             hcCCC
Q psy64            82 HTGEK   86 (115)
Q Consensus        82 h~~~~   86 (115)
                      |++++
T Consensus        85 H~~~k   89 (90)
T 1a1h_A           85 HLRQK   89 (90)
T ss_dssp             GGC--
T ss_pred             hcccC
Confidence            99876

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.74  E-value=6.1e-18  Score=87.74  Aligned_cols=65  Identities=37%  Similarity=0.812  Sum_probs=56.2

Q ss_pred             HhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCce
Q psy64            10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY   88 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~   88 (115)
                      ..+.++++|.|+.|++.|.....|..|++.              |.++++|+|..|++.|.....|..|+++|++++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~--------------H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTV--------------HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHH--------------HCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHH--------------cCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            346778899999999999999999988874              46788999999999999999999999999999886

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.8e-17  Score=89.01  Aligned_cols=73  Identities=33%  Similarity=0.643  Sum_probs=67.3

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      +..|..|++.|.++++|.|++|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|+++
T Consensus        21 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~   86 (96)
T 2dmd_A           21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH--------------SDERPFKCQICPYASRNSSQLTVHLRS   86 (96)
T ss_dssp             HHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHS--------------CCCCCEECSSSSCEESSHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHh--------------CCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999999999999999998844              688999999999999999999999999


Q ss_pred             hcCCCce
Q psy64            82 HTGEKKY   88 (115)
Q Consensus        82 h~~~~~~   88 (115)
                      |+++++.
T Consensus        87 h~~~~~p   93 (96)
T 2dmd_A           87 HTGDSGP   93 (96)
T ss_dssp             CCSCCCC
T ss_pred             hcCCCCC
Confidence            9988753

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.71  E-value=1.3e-18  Score=85.88  Aligned_cols=57  Identities=25%  Similarity=0.411  Sum_probs=50.6

Q ss_pred             CCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            56 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        56 ~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      |++||.|+.|++.|.....|..|+++|.+++||.|+.|++.|.....|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            468999999999999999999999999999999999999999999999999988763

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=5.5e-18  Score=92.49  Aligned_cols=72  Identities=18%  Similarity=0.277  Sum_probs=65.0

Q ss_pred             HHHHHHhcCCCCCeecCCChhhcc-ChhhHHHHHHHhcChhHHHHHHHHhhcC-CCceecccccccccChhhHHHHHHHh
Q psy64             5 LKEHMAVHTTDRPFVCNMCPSTFK-LKKHLRQHYKVHLKMDTLENHMKAVHEK-IRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus         5 l~~h~~~h~~~~~~~C~~C~~~~~-~~~~l~~h~~~h~~~~~l~~h~~~~h~~-~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      +..|+++|.++++|.|++|++.|. ....|..|++.|              .+ +++|.|..|++.|.....|..|++.|
T Consensus        12 ~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h--------------~~~~~~~~C~~C~k~F~~~~~L~~H~~~h   77 (98)
T 2gqj_A           12 EEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVC--------------QKLQDALKCQHCRKQFKSKAGLNYHTMAE   77 (98)
T ss_dssp             CSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHH--------------HHHHHHHSCSSSCCCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHH--------------cCCCCCEECCCCCCccCCHHHHHHHHHHH
Confidence            467999999999999999999999 999999998855              45 78999999999999999999999999


Q ss_pred             cCCCceeE
Q psy64            83 TGEKKYIF   90 (115)
Q Consensus        83 ~~~~~~~C   90 (115)
                      ++++|+..
T Consensus        78 ~~~kp~~~   85 (98)
T 2gqj_A           78 HSAKPSDA   85 (98)
T ss_dssp             SCSCSSCC
T ss_pred             cCCCCCCC
Confidence            99998654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.71  E-value=2.9e-17  Score=86.45  Aligned_cols=69  Identities=33%  Similarity=0.713  Sum_probs=63.2

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      +..|..|++.|.+++||.|+.|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|+++
T Consensus        14 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH--------------TGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             HHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHH--------------HTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             chhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHh--------------cCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            468999999999999999999999999999999998744              688999999999999999999999999


Q ss_pred             hcC
Q psy64            82 HTG   84 (115)
Q Consensus        82 h~~   84 (115)
                      |+|
T Consensus        80 H~g   82 (82)
T 2kmk_A           80 HTG   82 (82)
T ss_dssp             HC-
T ss_pred             hCC
Confidence            875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.1e-18  Score=89.07  Aligned_cols=60  Identities=27%  Similarity=0.351  Sum_probs=57.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|.++++|.|+.|++.|.....|..|++.|.+++||.|++|++.|.....|..|+++|..
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            578899999999999999999999999999999999999999999999999999998864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=3.5e-17  Score=83.98  Aligned_cols=64  Identities=27%  Similarity=0.437  Sum_probs=53.7

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCce
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY   88 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~   88 (115)
                      .+++++||.|++|++.|.....|..|++.              |.++++|.|+.|++.|.....|..|++.|.+++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERI--------------HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGG--------------GCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHH--------------cCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            46778889999999999888888888764              46788899999999999988999998888888774

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.4e-18  Score=88.20  Aligned_cols=61  Identities=21%  Similarity=0.243  Sum_probs=56.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHH-h-cCCCceeEEeecceehhhhhhccCCcccccc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRI-H-TGEKKYIFIVVKKIIVVIYAKKFSLDIEILC  113 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~-h-~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~~  113 (115)
                      .|.+++||.|+.|++.|.....|..|+.. | .+++||.|+.|++.|.....|..|+++|+++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC-
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcCC
Confidence            57899999999999999999999999998 7 6899999999999999999999999988753

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.3e-17  Score=89.78  Aligned_cols=65  Identities=20%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             HHHHHHhcCCCCCeecCCChhhc-cChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHH-HHHh
Q psy64             5 LKEHMAVHTTDRPFVCNMCPSTF-KLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLH-MRIH   82 (115)
Q Consensus         5 l~~h~~~h~~~~~~~C~~C~~~~-~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h-~~~h   82 (115)
                      +..|++.+.+++||.|++|++.| .....|..|++              .| ++++|.|.+||+.|.....|..| +.+|
T Consensus        22 ~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~--------------~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           22 EEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME--------------NC-KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             HHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHH--------------HH-CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHH--------------HH-CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            34444444444555555555555 44444444443              33 44455555555555555555555 4444


Q ss_pred             cC
Q psy64            83 TG   84 (115)
Q Consensus        83 ~~   84 (115)
                      ++
T Consensus        87 ~~   88 (96)
T 2ctd_A           87 NS   88 (96)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=4.6e-17  Score=83.99  Aligned_cols=65  Identities=31%  Similarity=0.594  Sum_probs=59.1

Q ss_pred             HHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCc
Q psy64             9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus         9 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      .++|++++||.|++|++.|.....|..|++.|              .++++|+|+.|++.|.....|..|+++|+++.+
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVH--------------TGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGG--------------GCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhc--------------CCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            45789999999999999999999999998844              788999999999999999999999999987653

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=4.6e-18  Score=87.31  Aligned_cols=60  Identities=12%  Similarity=0.024  Sum_probs=56.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .+.++++|.|..|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|..
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            467899999999999999999999999999999999999999999999999999998864

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=4.7e-18  Score=87.90  Aligned_cols=66  Identities=26%  Similarity=0.424  Sum_probs=58.6

Q ss_pred             HHHHHHHhhcCCCceecc--cccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCcccc
Q psy64            46 LENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        46 l~~h~~~~h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      +..+....+.++++|.|+  .|++.|.....|..|++.|.+++||.|++|++.|.....|..|+++|.
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            344455577899999997  699999999999999999999999999999999999999999999874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.68  E-value=9.6e-18  Score=89.20  Aligned_cols=59  Identities=10%  Similarity=0.120  Sum_probs=54.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCC-cccc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSL-DIEI  111 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~-~~h~  111 (115)
                      .+...++|.|++||+.|.....|..|+++|++++||.|++|++.|.....|..|+ ++|.
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            3456788999999999999999999999999999999999999999999999997 5664

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.67  E-value=1.1e-17  Score=86.81  Aligned_cols=60  Identities=23%  Similarity=0.265  Sum_probs=56.8

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .+.++++|+|..|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|.+
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            457889999999999999999999999999999999999999999999999999998865

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=8.4e-17  Score=88.90  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=65.8

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHH-
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR-   80 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~-   80 (115)
                      +..|..|++.|.  +||.|++|++.|.....|..|+. |              .++++|.|+.|++.|.....|..|++ 
T Consensus        29 ~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H--------------~~~~~~~C~~C~~~f~~~~~L~~H~~~   91 (107)
T 1wjp_A           29 LLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-K--------------CEYKKLTCLECMRTFKSSFSIWRHQVE   91 (107)
T ss_dssp             HHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-H--------------CSTGGGEEGGGTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-c--------------CCCCCccCccccchhCCHHHHHHHHHH
Confidence            467899999984  79999999999999999998874 4              68899999999999999999999997 


Q ss_pred             HhcCCCceeEE
Q psy64            81 IHTGEKKYIFI   91 (115)
Q Consensus        81 ~h~~~~~~~C~   91 (115)
                      .|.++++|.+.
T Consensus        92 ~H~~~~~~~~~  102 (107)
T 1wjp_A           92 VHNQNNMAPTS  102 (107)
T ss_dssp             TSCCCCCCCCC
T ss_pred             HcCCCCCCCCC
Confidence            99999999874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=5e-18  Score=88.70  Aligned_cols=65  Identities=17%  Similarity=0.277  Sum_probs=57.8

Q ss_pred             HHHHHHhhcCCCceecccccccccChhhHHHHHH-HhcCC-CceeEEeecceehhhhhhccCCccccc
Q psy64            47 ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR-IHTGE-KKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        47 ~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~-~h~~~-~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ..|++ .|.+++||.|+.|++.|.....|..|+. .|.++ ++|.|++|++.|.....|..|+++++.
T Consensus         4 ~~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            4 GSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCC-CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             Ccccc-ccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            44555 7899999999999999999999999997 67765 899999999999999999999997654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.9e-17  Score=90.09  Aligned_cols=72  Identities=14%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             hccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccc-cChhhHHHHHHHhcCCCceeEEeecceehhhhhhc
Q psy64            26 TFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAF-FDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKK  104 (115)
Q Consensus        26 ~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~-~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~  104 (115)
                      +|.....+..|++              .+.++++|.|+.|++.| .....|..|+++| +++||.|++|++.|.....|.
T Consensus        15 ~~~~~~~~~~~~~--------------~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~   79 (96)
T 2ctd_A           15 VYAAGSLEEQWYL--------------EIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMK   79 (96)
T ss_dssp             SSCTTCHHHHHHH--------------HHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHH
T ss_pred             CCCCchHHHHHHH--------------HhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHH
Confidence            4455555666655              34678999999999999 9999999999999 999999999999999999999


Q ss_pred             cC-Cccccc
Q psy64           105 FS-LDIEIL  112 (115)
Q Consensus       105 ~h-~~~h~~  112 (115)
                      .| +++|..
T Consensus        80 ~H~~~~H~~   88 (96)
T 2ctd_A           80 YHVMANHNS   88 (96)
T ss_dssp             HHHHHHTCC
T ss_pred             HHhHHhcCC
Confidence            99 888754

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.7e-17  Score=85.88  Aligned_cols=60  Identities=23%  Similarity=0.311  Sum_probs=56.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .+.++++|.|+.|++.|.....|..|++.|.+++||.|++|++.|.....|..|+++|.+
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCC
Confidence            346789999999999999999999999999999999999999999999999999999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.4e-17  Score=86.09  Aligned_cols=70  Identities=20%  Similarity=0.487  Sum_probs=59.8

Q ss_pred             HHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcC-CCceecccccccccChhhHHHHHHHhc
Q psy64             5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEK-IRDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus         5 l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~-~~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      +.+|+++|++++||.|++|++.|.....|..|++..             |.+ .++|+|+.|++.|.....|..|++.+.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~-------------h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK-------------HTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHH-------------SSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHh-------------cCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            456889999999999999999999999999998632             344 489999999999999999999999854


Q ss_pred             -CCCc
Q psy64            84 -GEKK   87 (115)
Q Consensus        84 -~~~~   87 (115)
                       .+.|
T Consensus        70 ~~~~p   74 (77)
T 2ct1_A           70 SYSGP   74 (77)
T ss_dssp             CCSCC
T ss_pred             CCCCC
Confidence             4444

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.66  E-value=2.4e-18  Score=98.05  Aligned_cols=66  Identities=21%  Similarity=0.219  Sum_probs=58.9

Q ss_pred             hHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCcccccc
Q psy64            44 DTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILC  113 (115)
Q Consensus        44 ~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~~  113 (115)
                      ..|..|+  .|.+++||.|+.||+.|.....|..|+++|  ++||.|+.|++.|.....|..|+++|++.
T Consensus        61 ~~l~~h~--~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           61 SYLYRLL--ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHH--HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHH--HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            3444454  367899999999999999999999999999  89999999999999999999999998865

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=3.2e-20  Score=95.97  Aligned_cols=70  Identities=17%  Similarity=0.214  Sum_probs=61.0

Q ss_pred             HHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHh
Q psy64             3 RQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus         3 ~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      ..|..|++.|.+++||.|++|++.|.....|..                     +++|.|+.||+.|.....|..|+++|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~---------------------~~~~~C~~C~~~f~~~~~l~~H~~~H   62 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR---------------------RKTPMCEKCRKDSCQEAALNKDEGNE   62 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC---------------------SSSCCCHHHHHTCSCCCSSCCCSSCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc---------------------CCCCCCCCCChhhcCHHHHHHHHHhh
Confidence            456778889999999999999999988776542                     57899999999999999999999999


Q ss_pred             cCCCceeEEee
Q psy64            83 TGEKKYIFIVV   93 (115)
Q Consensus        83 ~~~~~~~C~~C   93 (115)
                      ++++||.|++|
T Consensus        63 ~~~~~~~C~~C   73 (73)
T 2ctu_A           63 SGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCSSCCCC
T ss_pred             cCCCCCCCCCC
Confidence            99999999887

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=3.1e-18  Score=93.47  Aligned_cols=60  Identities=13%  Similarity=0.120  Sum_probs=56.8

Q ss_pred             hhcCCCceeccccccccc-ChhhHHHHHHHhcC-CCceeEEeecceehhhhhhccCCccccc
Q psy64            53 VHEKIRDFQCKVCDRAFF-DVYNLKLHMRIHTG-EKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~-~~~~l~~h~~~h~~-~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|.++++|.|..|++.|. ....|..|+++|.+ ++||.|++|++.|.....|..|+++|+.
T Consensus        18 ~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A           18 AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             TTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             HhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcC
Confidence            668899999999999999 99999999999999 9999999999999999999999988864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.65  E-value=3.9e-17  Score=80.48  Aligned_cols=54  Identities=17%  Similarity=0.171  Sum_probs=51.9

Q ss_pred             ceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ||.|+.|++.|.....|..|+++|.+++||.|+.|++.|.....|..|+++|..
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999999999999999999999865

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=3.3e-16  Score=83.25  Aligned_cols=62  Identities=23%  Similarity=0.547  Sum_probs=55.2

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHH-HHhcCCC
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM-RIHTGEK   86 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~-~~h~~~~   86 (115)
                      .+.+.++|.|++|+++|.....|..|+++|              .+++||.|+.|++.|.....|..|+ +.|++|+
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H--------------~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLL--------------HAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTT--------------SCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhc--------------cCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            456678899999999999999999999854              7899999999999999999999996 5688775

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=8.7e-16  Score=82.91  Aligned_cols=71  Identities=25%  Similarity=0.635  Sum_probs=63.4

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCC--CceecccccccccChhhHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKI--RDFQCKVCDRAFFDVYNLKLHM   79 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~--~~~~C~~c~~~~~~~~~l~~h~   79 (115)
                      +..|..|++.|.++++|.|++|++.|.....|..|++.|              .++  ++|.|+.|++.|.....|..|+
T Consensus        20 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~~~C~~C~~~f~~~~~L~~H~   85 (95)
T 2yt9_A           20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH--------------DGSVGKPYICQSCGKGFSRPDHLNGHI   85 (95)
T ss_dssp             SHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHH--------------CCCCCSSBCCSSSCCCBSSHHHHHHHH
T ss_pred             hHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHh--------------cCCCCCceECCCccchhCCHHHHHHHH
Confidence            467999999999999999999999999999999999865              444  8999999999999999999998


Q ss_pred             H-HhcCCC
Q psy64            80 R-IHTGEK   86 (115)
Q Consensus        80 ~-~h~~~~   86 (115)
                      + .|.++.
T Consensus        86 ~~~H~~~~   93 (95)
T 2yt9_A           86 KQVHSGPS   93 (95)
T ss_dssp             HHTSCCCS
T ss_pred             HHhcCCCC
Confidence            6 787653

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=5.3e-17  Score=80.83  Aligned_cols=57  Identities=32%  Similarity=0.367  Sum_probs=53.1

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCC-ccccccc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSL-DIEILCV  114 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~-~~h~~~~  114 (115)
                      +||.|+.|++.|.....|..|++.|++++||.|+.|++.|.....|..|+ ++|.+.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            58999999999999999999999999999999999999999999999996 7887654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.7e-16  Score=80.41  Aligned_cols=63  Identities=17%  Similarity=0.502  Sum_probs=55.9

Q ss_pred             HHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhh-cCCCceecccccccccChhhHHHHHHHhcC
Q psy64             9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH-EKIRDFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus         9 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h-~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      +++|++++||.|+.|++.|.....|..|++.+             | .+++||.|+.|++.|.....|..|++.+.+
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~-------------H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTS-------------HKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHH-------------SSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHH-------------cCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            35688999999999999999999999998752             4 578999999999999999999999998865

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=82.66  Aligned_cols=69  Identities=36%  Similarity=0.756  Sum_probs=63.1

Q ss_pred             hHHHHHHHHhcCCCCCeecC--CChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM   79 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~   79 (115)
                      +..|..|++.|.++++|.|+  .|++.|.....|..|++.              |.++++|.|+.|++.|.....|..|+
T Consensus        30 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~C~~~f~~~~~l~~H~   95 (100)
T 2ebt_A           30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK--------------HTGAKPFQCGVCNRSFSRSDHLALHM   95 (100)
T ss_dssp             HHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHH--------------HTSCCSCBCSSSCCBCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHH--------------hCCCCCeECCCCcCccCCHHHHHHHH
Confidence            46899999999999999996  699999999999999874              47889999999999999999999999


Q ss_pred             HHhcC
Q psy64            80 RIHTG   84 (115)
Q Consensus        80 ~~h~~   84 (115)
                      ++|.+
T Consensus        96 ~~H~~  100 (100)
T 2ebt_A           96 KRHQN  100 (100)
T ss_dssp             HHHCC
T ss_pred             HHhCC
Confidence            99864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.62  E-value=5.5e-16  Score=76.28  Aligned_cols=57  Identities=21%  Similarity=0.467  Sum_probs=48.6

Q ss_pred             CCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcC
Q psy64            14 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        14 ~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      |++||.|++|++.|.....|..|++.|              .+++||.|+.|++.|.....|..|++.|.+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTH--------------TGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHH--------------HCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHc--------------CCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            468999999999999999999998844              789999999999999999999999998753

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=5.4e-17  Score=86.17  Aligned_cols=67  Identities=13%  Similarity=0.153  Sum_probs=59.6

Q ss_pred             HHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCC----CceeEEeecceehhhhhhccCCcccccc
Q psy64            46 LENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE----KKYIFIVVKKIIVVIYAKKFSLDIEILC  113 (115)
Q Consensus        46 l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~----~~~~C~~C~~~~~~~~~~~~h~~~h~~~  113 (115)
                      +..|++ .|.++++|.|..|++.|.....|..|+..+.++    ++|.|++|++.|.....|..|+++|...
T Consensus         3 ~~~H~~-~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A            3 SGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             TTCCST-TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             cccccc-eecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCC
Confidence            345566 788999999999999999999999999887765    7999999999999999999999988753

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.62  E-value=1.2e-15  Score=81.34  Aligned_cols=68  Identities=40%  Similarity=0.767  Sum_probs=62.0

Q ss_pred             hHHHHHHHHhcCCCCCeecC--CChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM   79 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~   79 (115)
                      +..|..|++.|.+++||.|+  .|++.|.....|..|++.              |.++++|.|+.|++.|.....|..|+
T Consensus        20 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~C~~~f~~~~~l~~H~   85 (89)
T 2wbs_A           20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK--------------HTGHRPFQCQKCDRAFSRSDHLALHM   85 (89)
T ss_dssp             HHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHH--------------HHCCCCEECSSSSCEESSHHHHHHHG
T ss_pred             HHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHH--------------cCCCCCccCCCCCcccCCHHHHHHHH
Confidence            46899999999999999997  699999999999999874              47889999999999999999999999


Q ss_pred             HHhc
Q psy64            80 RIHT   83 (115)
Q Consensus        80 ~~h~   83 (115)
                      ++|.
T Consensus        86 ~~H~   89 (89)
T 2wbs_A           86 KRHF   89 (89)
T ss_dssp             GGGC
T ss_pred             HhhC
Confidence            8873

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=7.5e-16  Score=80.46  Aligned_cols=68  Identities=19%  Similarity=0.300  Sum_probs=55.5

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHH-HHhcCCCcee
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM-RIHTGEKKYI   89 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~-~~h~~~~~~~   89 (115)
                      +|++++||.|++|++.|.....|..|++.|.           ...++++|.|..|++.|.....|..|+ ..|.++++..
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-----------~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHA-----------ETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHH-----------HHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhh-----------ccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            3788999999999999999999999988652           011378999999999999999999998 5677777654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=6.7e-17  Score=84.51  Aligned_cols=58  Identities=14%  Similarity=0.118  Sum_probs=53.7

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcC---CCceeEEeecceehhhhhhccCCc-ccc
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG---EKKYIFIVVKKIIVVIYAKKFSLD-IEI  111 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~---~~~~~C~~C~~~~~~~~~~~~h~~-~h~  111 (115)
                      |.++++|+|..|++.|.....|..|++.|.+   +++|.|+.|++.|.....|..|++ .|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            5789999999999999999999999999986   899999999999999999999995 443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=2.2e-16  Score=86.60  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             cCCCceecccccccccChhhHHHHHH-Hh---cCCCceeEEeecceehhhhhhccC-Cccccc
Q psy64            55 EKIRDFQCKVCDRAFFDVYNLKLHMR-IH---TGEKKYIFIVVKKIIVVIYAKKFS-LDIEIL  112 (115)
Q Consensus        55 ~~~~~~~C~~c~~~~~~~~~l~~h~~-~h---~~~~~~~C~~C~~~~~~~~~~~~h-~~~h~~  112 (115)
                      +|++||.|..||+.|...+.|..|++ .|   .+++||.|++|++.|..+..|..| +++|.+
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htg   76 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG   76 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTT
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCC
Confidence            68899999999999999999999997 58   678999999999999999999999 788864

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.3e-15  Score=84.31  Aligned_cols=69  Identities=33%  Similarity=0.689  Sum_probs=63.3

Q ss_pred             hHHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      +..|..|++.|.++++|.|++|++.|.....|..|++.              |.++++|.|+.|++.|.....|..|++.
T Consensus        22 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI--------------HTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             HHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT--------------TCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHH--------------cCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            46899999999999999999999999999999999874              4788999999999999999999999998


Q ss_pred             hcC
Q psy64            82 HTG   84 (115)
Q Consensus        82 h~~   84 (115)
                      |..
T Consensus        88 ~~~   90 (110)
T 2csh_A           88 CTK   90 (110)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            753

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.60  E-value=1.4e-15  Score=74.83  Aligned_cols=56  Identities=27%  Similarity=0.606  Sum_probs=51.9

Q ss_pred             CeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCC
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      ||.|++|++.|.....|..|++.              |.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~--------------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT--------------HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--------------TSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh--------------cCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999999999999999884              478899999999999999999999999998876

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.56  E-value=3.8e-15  Score=84.69  Aligned_cols=66  Identities=21%  Similarity=0.345  Sum_probs=58.7

Q ss_pred             HHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHh
Q psy64             3 RQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus         3 ~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      ..|..|+ .|++++||.|++|++.|.....|..|++              .|  ++||.|+.||+.|.....|..|+++|
T Consensus        61 ~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~--------------~H--~~~~~C~~C~k~f~~~~~l~~H~~~h  123 (129)
T 2wbt_A           61 SYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIR--------------YT--EHTKVCPVCKKEFTSTDSALDHVCKK  123 (129)
T ss_dssp             HHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHH--------------HT--CCCCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             HHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHH--------------HC--CCCCCCCCCCcccCCHHHHHHHHHHH
Confidence            4566676 6888999999999999999999999987              34  68899999999999999999999999


Q ss_pred             cCC
Q psy64            83 TGE   85 (115)
Q Consensus        83 ~~~   85 (115)
                      +++
T Consensus       124 ~~~  126 (129)
T 2wbt_A          124 HNI  126 (129)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            875

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=5.3e-16  Score=82.84  Aligned_cols=56  Identities=30%  Similarity=0.539  Sum_probs=53.0

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ++||.|+.|++.|.....|..|+++|.+++||.|+.|++.|.....|..|+++|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999999999999999999999988763

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.7e-15  Score=80.46  Aligned_cols=63  Identities=27%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             CCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCc--------eecccccccccChhhHHHHHHHhcCCCc
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRD--------FQCKVCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~--------~~C~~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      ..+.|+.|++.|.....|..|++.+             |.++++        |.|+.|++.|.....|..|+++|++++|
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~-------------H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   90 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTME-------------HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS   90 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHT-------------TTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHh-------------ccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            3467999999999999999998851             356666        8999999999999999999999999999


Q ss_pred             eeEE
Q psy64            88 YIFI   91 (115)
Q Consensus        88 ~~C~   91 (115)
                      |.|+
T Consensus        91 ~~C~   94 (95)
T 2ej4_A           91 GPSS   94 (95)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            9986

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=7.1e-16  Score=78.22  Aligned_cols=56  Identities=13%  Similarity=0.001  Sum_probs=52.3

Q ss_pred             cCCCceecccccccccChhhHHHHHHHhcCCCceeEE-eecceehhhhhhccCCccccc
Q psy64            55 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI-VVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        55 ~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~-~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      -+.+||.|..|++.|. ...|..|+++ ++++||.|+ .|++.|..+..|..|+++|..
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            4678999999999999 9999999999 999999999 999999999999999998753

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=9e-15  Score=72.58  Aligned_cols=56  Identities=38%  Similarity=0.866  Sum_probs=50.5

Q ss_pred             CCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHH-HHhcCC
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM-RIHTGE   85 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~-~~h~~~   85 (115)
                      +||.|++|++.|.....|..|++.|              .++++|.|+.|++.|.....|..|+ ..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSH--------------TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTT--------------TSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHh--------------CCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            5899999999999999999998844              7889999999999999999999997 677765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.53  E-value=4.9e-15  Score=76.20  Aligned_cols=57  Identities=25%  Similarity=0.399  Sum_probs=53.1

Q ss_pred             hcCCCceeccc--ccccccChhhHHHHHHHhcCCCceeEEe--ecceehhhhhhccCCccc
Q psy64            54 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYIFIV--VKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        54 h~~~~~~~C~~--c~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~~~~h~~~h  110 (115)
                      ....++|.|..  |++.|.....|..|++.|++++||.|++  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            35678999988  9999999999999999999999999975  999999999999999876

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.7e-14  Score=74.29  Aligned_cols=59  Identities=34%  Similarity=0.723  Sum_probs=53.3

Q ss_pred             hcCCCCCeecC--CChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhc
Q psy64            11 VHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        11 ~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      ++.+++||.|+  .|++.|.....|..|++.|              .++++|.|+.||+.|.....|..|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h--------------~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHH--------------HCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhh--------------CCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            47889999997  5999999999999998744              68899999999999999999999998874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=2.4e-14  Score=72.50  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=53.6

Q ss_pred             cCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc-cccccccChhhHHHHHHHhcCCCc
Q psy64            12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK-VCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus        12 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~-~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      ..+++||.|+.|+++|. ...|..|++              . .+++||.|+ .||+.|...+.|..|+++|....|
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~--------------~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQY--------------Q-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHH--------------H-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHH--------------H-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            45789999999999999 999998876              4 688999999 999999999999999999887665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.50  E-value=5.6e-15  Score=72.03  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=43.9

Q ss_pred             hhcCCCceecccccccccChhhHHHHHH-HhcCCCceeEEeecceehh
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMR-IHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~-~h~~~~~~~C~~C~~~~~~   99 (115)
                      .+.+++||.|+.|++.|.....|..|++ +|.+++||.|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4678999999999999999999999997 8999999999999999975

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.49  E-value=4e-15  Score=70.16  Aligned_cols=44  Identities=30%  Similarity=0.387  Sum_probs=40.7

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGS-SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCC-ccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 67899999999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=5.2e-15  Score=69.71  Aligned_cols=44  Identities=25%  Similarity=0.221  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.++++|.|+.||+.|.....|..|+.+|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGS-SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSC-TTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             ccc-CCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 67899999999999999999999999999999999999886

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.48  E-value=1.4e-15  Score=76.25  Aligned_cols=56  Identities=11%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             HHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCC
Q psy64            48 NHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSL  107 (115)
Q Consensus        48 ~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~  107 (115)
                      .|++ .|.+++||.|+.||+.|.....|.   .+|++++||.|+.|++.|....++..+-
T Consensus         4 ~h~~-~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            4 TDER-DSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCSS-SCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             hHHH-HcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccccccc
Confidence            4445 688999999999999999988876   7899999999999999999887776543

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.48  E-value=5.2e-15  Score=69.75  Aligned_cols=41  Identities=27%  Similarity=0.395  Sum_probs=39.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=4.4e-15  Score=69.97  Aligned_cols=44  Identities=27%  Similarity=0.328  Sum_probs=40.7

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.||+.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-CSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccc-ccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 67899999999999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=6.7e-15  Score=68.68  Aligned_cols=41  Identities=24%  Similarity=0.301  Sum_probs=39.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.||+.|.....|..|+++|++++||.|++|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57899999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=5.8e-15  Score=69.55  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=39.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=4.9e-15  Score=69.83  Aligned_cols=44  Identities=30%  Similarity=0.391  Sum_probs=40.5

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.||+.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGS-SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccc-ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344 67899999999999999999999999999999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=5.9e-14  Score=73.21  Aligned_cols=55  Identities=31%  Similarity=0.672  Sum_probs=49.9

Q ss_pred             hHHHHHHHH-hcCCCCCeecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccccccccc
Q psy64             2 KRQLKEHMA-VHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFF   70 (115)
Q Consensus         2 k~~l~~h~~-~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~   70 (115)
                      +.+|..|++ .|.+++||.|++  |++.|.....|..|++.|              .+++||.|..||+.|.
T Consensus        22 ~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H--------------~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH--------------SDTRDYICEFSGPSSG   79 (79)
T ss_dssp             HHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHH--------------HTSCCCSCCSSSCCCC
T ss_pred             HHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHh--------------CCCCCeeCCCCCCCCC
Confidence            468999999 799999999999  999999999999998854              7889999999999884

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=5.8e-15  Score=69.53  Aligned_cols=44  Identities=25%  Similarity=0.305  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||+|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSS-CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCC-CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344 67899999999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=6.3e-15  Score=69.38  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=39.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=5.5e-15  Score=69.63  Aligned_cols=44  Identities=27%  Similarity=0.326  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.||+.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGS-SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-SCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ccc-CCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            344 67899999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.48  E-value=5.4e-15  Score=69.65  Aligned_cols=41  Identities=27%  Similarity=0.385  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=5.7e-15  Score=69.58  Aligned_cols=41  Identities=29%  Similarity=0.405  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||+|+.||+.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=5.6e-15  Score=69.56  Aligned_cols=41  Identities=32%  Similarity=0.414  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6e-15  Score=69.50  Aligned_cols=44  Identities=27%  Similarity=0.407  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.||+.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGS-SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccC-CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            344 67899999999999999999999999999999999999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=5.7e-15  Score=69.61  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.||+.|...+.|..|+++|++++||.|+.|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGS-SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCC-CCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCC-CCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            444 67899999999999999999999999999999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=5.3e-15  Score=69.68  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=5.6e-15  Score=69.60  Aligned_cols=44  Identities=36%  Similarity=0.417  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|..||+.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGS-SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-SCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCC-CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344 67899999999999999999999999999999999999987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.47  E-value=1.2e-13  Score=72.80  Aligned_cols=65  Identities=31%  Similarity=0.473  Sum_probs=59.1

Q ss_pred             hHHHHHHHHhcCCCCCeecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc---ccccccChhhHH
Q psy64             2 KRQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV---CDRAFFDVYNLK   76 (115)
Q Consensus         2 k~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~---c~~~~~~~~~l~   76 (115)
                      +..|..|+++|.+++||.|+.  |++.|.....|..|++.|              .+   |.|+.   |++.|.....|.
T Consensus        16 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~---~~C~~~~~C~~~f~~~~~l~   78 (85)
T 2j7j_A           16 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH--------------AG---YPCKKDDSCSFVGKTWTLYL   78 (85)
T ss_dssp             HHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHH--------------HS---EECCSCSSCCCEESSHHHHH
T ss_pred             HHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHh--------------CC---CCCCCCCCCCCccCCHHHHH
Confidence            468999999999999999998  999999999999999865              34   99999   999999999999


Q ss_pred             HHHHHhc
Q psy64            77 LHMRIHT   83 (115)
Q Consensus        77 ~h~~~h~   83 (115)
                      .|++.|+
T Consensus        79 ~H~~~hh   85 (85)
T 2j7j_A           79 KHVAECH   85 (85)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhcC
Confidence            9998763

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=8e-15  Score=69.02  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.||+.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCC-CCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            444 67899999999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7.6e-15  Score=69.14  Aligned_cols=41  Identities=27%  Similarity=0.464  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7.4e-15  Score=69.17  Aligned_cols=41  Identities=24%  Similarity=0.366  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||+|+.|++.|.....|..|+.+|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6.7e-15  Score=69.33  Aligned_cols=44  Identities=27%  Similarity=0.365  Sum_probs=40.7

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.++++|.|+.||+.|.....|..|+.+|++++||.|+.|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STT-CCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             ccc-CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 67899999999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.47  E-value=3.4e-15  Score=70.32  Aligned_cols=44  Identities=23%  Similarity=0.267  Sum_probs=40.5

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.||+.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCC-CSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccc-CCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344 67899999999999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.4e-15  Score=68.78  Aligned_cols=44  Identities=30%  Similarity=0.289  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.+++||.|+.||+.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-TTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCC-CCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344 67899999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6.7e-15  Score=69.33  Aligned_cols=41  Identities=27%  Similarity=0.332  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6.6e-15  Score=69.33  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             SCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             ccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7.9e-15  Score=69.08  Aligned_cols=41  Identities=27%  Similarity=0.376  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.9e-15  Score=81.78  Aligned_cols=75  Identities=21%  Similarity=0.254  Sum_probs=62.7

Q ss_pred             hHHHHHHHHh--cCCCCCee-cCCChhhc--cChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHH
Q psy64             2 KRQLKEHMAV--HTTDRPFV-CNMCPSTF--KLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLK   76 (115)
Q Consensus         2 k~~l~~h~~~--h~~~~~~~-C~~C~~~~--~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~   76 (115)
                      +..|..|++.  |.+++++. |++|++.|  .....|..|++              .|.+++||.|+.|++.|.....|.
T Consensus        32 ~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~--------------~H~~~~~~~C~~C~k~f~~~~~L~   97 (115)
T 2dmi_A           32 LVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG--------------KEDAQKVLKCMYCGHSFESLQDLS   97 (115)
T ss_dssp             HHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCC--------------SCCCCSSCBCSSSCCBCSSHHHHH
T ss_pred             HHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhh--------------ccCCCcceECCCCCCccCCHHHHH
Confidence            4689999998  77777655 99999999  77777777765              457899999999999999999999


Q ss_pred             HHHHHhcCCCceeE
Q psy64            77 LHMRIHTGEKKYIF   90 (115)
Q Consensus        77 ~h~~~h~~~~~~~C   90 (115)
                      .|++.+........
T Consensus        98 ~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           98 VHMIKTKHYQKVSG  111 (115)
T ss_dssp             HHHHHTTTTTCSCC
T ss_pred             HHHHHhCCcccCCC
Confidence            99999876655443

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=6.6e-15  Score=69.37  Aligned_cols=41  Identities=34%  Similarity=0.411  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.||+.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.8e-15  Score=68.88  Aligned_cols=41  Identities=22%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.||+.|.....|..|+++|++++||.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.46  E-value=5.6e-15  Score=69.61  Aligned_cols=41  Identities=27%  Similarity=0.430  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||+|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            67899999999999999999999999999999999999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.5e-15  Score=69.00  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=39.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8e-15  Score=69.09  Aligned_cols=41  Identities=24%  Similarity=0.430  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.9e-15  Score=68.89  Aligned_cols=41  Identities=27%  Similarity=0.336  Sum_probs=39.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1e-14  Score=68.65  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=39.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=9.5e-15  Score=68.79  Aligned_cols=41  Identities=37%  Similarity=0.445  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.2e-14  Score=68.52  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-14  Score=68.46  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.9e-15  Score=69.04  Aligned_cols=41  Identities=32%  Similarity=0.436  Sum_probs=39.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.||+.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=6.5e-15  Score=69.37  Aligned_cols=41  Identities=24%  Similarity=0.359  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=8.8e-15  Score=68.88  Aligned_cols=41  Identities=24%  Similarity=0.387  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.45  E-value=2.1e-14  Score=68.23  Aligned_cols=43  Identities=30%  Similarity=0.526  Sum_probs=40.5

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      .+.++++|.|..|++.|.....|..|+++|++++||.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4578899999999999999999999999999999999999986

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=8.7e-15  Score=68.92  Aligned_cols=41  Identities=22%  Similarity=0.492  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=7.1e-15  Score=69.24  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=39.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|+|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.7e-14  Score=67.97  Aligned_cols=41  Identities=24%  Similarity=0.406  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.44  E-value=4e-14  Score=66.30  Aligned_cols=42  Identities=19%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeec
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVK   94 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~   94 (115)
                      .|.+++||.|..|++.|.....|..|+++|+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            578899999999999999999999999999999999999996

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.6e-14  Score=67.97  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=39.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.||+.|.....|..|+++|++++||.|+.|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.44  E-value=1.1e-14  Score=68.55  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=39.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=6.6e-15  Score=69.36  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=39.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.6e-14  Score=68.24  Aligned_cols=41  Identities=29%  Similarity=0.381  Sum_probs=39.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHH-HhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMR-IHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~-~h~~~~~~~C~~C   93 (115)
                      .|.+++||.|+.||+.|.....|..|++ .|++++||.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6789999999999999999999999999 9999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.4e-14  Score=68.19  Aligned_cols=44  Identities=32%  Similarity=0.381  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      |++ .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGS-SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-SSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCC-CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344 67899999999999999999999999999999999999865

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=2.2e-14  Score=67.55  Aligned_cols=41  Identities=37%  Similarity=0.497  Sum_probs=38.9

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999875

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=5.2e-14  Score=65.58  Aligned_cols=44  Identities=20%  Similarity=0.335  Sum_probs=39.5

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|+++|.....|..|++.              |.+++||.|+.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT--------------HAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHH--------------HTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            46789999999999999999999999999884              478999999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.41  E-value=3.7e-14  Score=66.74  Aligned_cols=45  Identities=24%  Similarity=0.404  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHH--------------HSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=7.1e-14  Score=65.71  Aligned_cols=45  Identities=20%  Similarity=0.409  Sum_probs=40.6

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHT--------------TSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999986

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=6.3e-14  Score=65.90  Aligned_cols=45  Identities=20%  Similarity=0.313  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|+++|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT--------------HAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHH--------------HTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=6.4e-14  Score=65.84  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=40.6

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHH--------------HSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=4.6e-14  Score=66.35  Aligned_cols=45  Identities=27%  Similarity=0.415  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC--------------HTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHH--------------HSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHh--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999874              478999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=6.2e-14  Score=65.92  Aligned_cols=45  Identities=22%  Similarity=0.439  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHH--------------HHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHh--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999986

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=6.5e-14  Score=65.87  Aligned_cols=45  Identities=24%  Similarity=0.391  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|+++|.....|..|++.              |.+++||+|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR--------------HFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHH--------------HHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHH--------------HcCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=6.8e-14  Score=65.75  Aligned_cols=45  Identities=16%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL--------------HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHH--------------CCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHh--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=8.8e-14  Score=65.38  Aligned_cols=45  Identities=22%  Similarity=0.479  Sum_probs=40.6

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI--------------HTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHH--------------TSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            477889999999999999999999999999884              478999999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=7.1e-14  Score=65.72  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHH--------------HHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999887

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-15  Score=78.44  Aligned_cols=60  Identities=18%  Similarity=0.081  Sum_probs=53.5

Q ss_pred             HHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            45 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        45 ~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|..|++ .|.++++|.|+.||+.|.....|..       +++|.|+.|++.|.....|..|+++|.+
T Consensus         5 ~l~~H~~-~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~   64 (73)
T 2ctu_A            5 SSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESG   64 (73)
T ss_dssp             SCCCCCC-CCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCC
T ss_pred             hHHHHHH-HhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcC
Confidence            4556666 6889999999999999999988765       8999999999999999999999999875

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=7.7e-14  Score=65.60  Aligned_cols=45  Identities=20%  Similarity=0.463  Sum_probs=40.4

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHH--------------HSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHH--------------HCCCCCCCCCCC
Confidence            367889999999999999999999999999884              478999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.40  E-value=7.3e-14  Score=65.70  Aligned_cols=44  Identities=23%  Similarity=0.332  Sum_probs=40.1

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKL--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHH--------------HSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            67889999999999999999999999999884              478999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=6.6e-14  Score=65.84  Aligned_cols=45  Identities=18%  Similarity=0.403  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI--------------HSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGG--------------GSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHH--------------hcCCCCCCCCCC
Confidence            467889999999999999999999999999874              578999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=9.3e-14  Score=65.30  Aligned_cols=45  Identities=20%  Similarity=0.441  Sum_probs=40.4

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI--------------HTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHH--------------HTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            367889999999999999999999999999884              478999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.1e-13  Score=65.08  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVL--------------HMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHH--------------HSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            67789999999999999999999999999884              478999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.39  E-value=7.7e-14  Score=65.59  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=40.4

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTG--------------GGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHh--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999874              478999999886

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=8.3e-14  Score=65.48  Aligned_cols=45  Identities=22%  Similarity=0.392  Sum_probs=40.4

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV--------------HTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHH--------------TTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=9.2e-14  Score=65.30  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT--------------HVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHH--------------CCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            467889999999999999999999999999884              478999999887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=6.6e-14  Score=65.84  Aligned_cols=45  Identities=20%  Similarity=0.390  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTT--------------TCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhh--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999874              478999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=6.1e-14  Score=65.97  Aligned_cols=45  Identities=22%  Similarity=0.295  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGG--------------TSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            367889999999999999999999999999874              578999999886

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=9.8e-14  Score=65.20  Aligned_cols=45  Identities=20%  Similarity=0.439  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGG--------------GCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHh--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999874              578999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=7.2e-14  Score=65.67  Aligned_cols=45  Identities=22%  Similarity=0.468  Sum_probs=40.4

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI--------------HTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGG--------------GSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            367889999999999999999999999999874              578999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=1.2e-13  Score=64.92  Aligned_cols=44  Identities=16%  Similarity=0.276  Sum_probs=39.9

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS--------------HSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHH--------------SCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            66789999999999999999999999999884              478999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=7.6e-14  Score=65.62  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=39.9

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTT--------------TTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            67889999999999999999999999999874              478999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=7.1e-14  Score=65.71  Aligned_cols=45  Identities=24%  Similarity=0.419  Sum_probs=40.3

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV--------------HTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHH--------------HHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHh--------------cCCCCCCCCCCC
Confidence            367789999999999999999999999999874              478999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.1e-13  Score=64.99  Aligned_cols=41  Identities=32%  Similarity=0.446  Sum_probs=39.1

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            57889999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=7.6e-14  Score=65.60  Aligned_cols=45  Identities=20%  Similarity=0.391  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTT--------------TCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            367789999999999999999999999999874              478999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.38  E-value=7e-14  Score=65.73  Aligned_cols=45  Identities=18%  Similarity=0.244  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++              .|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~--------------~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQN--------------VHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGG--------------GGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHH--------------HcCCCCCcCCCCC
Confidence            36788999999999999999999999999987              4578999999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.38  E-value=7e-14  Score=65.71  Aligned_cols=45  Identities=24%  Similarity=0.397  Sum_probs=40.3

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS--------------HTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGG--------------SSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            467889999999999999999999999999874              578999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=7.8e-14  Score=65.60  Aligned_cols=44  Identities=16%  Similarity=0.326  Sum_probs=39.7

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV--------------HMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGG--------------GGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHh--------------cCCCCCCCCCCC
Confidence            66789999999999999999999999999874              478999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.1e-13  Score=65.13  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=39.8

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.|              .+++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H--------------~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH--------------TGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHH--------------HSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHc--------------CCCCCCCCCCC
Confidence            667899999999999999999999999998854              78999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=6.6e-14  Score=65.83  Aligned_cols=45  Identities=22%  Similarity=0.386  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++              .|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~--------------~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRG--------------IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGG--------------GTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhh--------------hcCCCCCCCCCCC
Confidence            36778999999999999999999999999987              4578999999987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=7.8e-14  Score=65.59  Aligned_cols=40  Identities=33%  Similarity=0.388  Sum_probs=37.8

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.+++||+|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             ccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6789999999999999999999999999999999999963

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.38  E-value=1e-13  Score=63.86  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=37.0

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.++++|+|+.|++.|.....|..|+++|++++||.|+
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            578999999999999999999999999999999999984

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=7.9e-14  Score=65.59  Aligned_cols=45  Identities=22%  Similarity=0.378  Sum_probs=40.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTT--------------TSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            467889999999999999999999999999874              578999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.38  E-value=8.5e-14  Score=65.40  Aligned_cols=45  Identities=20%  Similarity=0.372  Sum_probs=40.3

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV--------------HSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGG--------------GTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            367889999999999999999999999999874              578999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=9.7e-14  Score=65.23  Aligned_cols=45  Identities=20%  Similarity=0.380  Sum_probs=40.4

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++              .|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~--------------~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR--------------VHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGG--------------GGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHH--------------HcCCCCCCCCCCC
Confidence            47789999999999999999999999999987              4578999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=8.4e-14  Score=65.43  Aligned_cols=45  Identities=18%  Similarity=0.314  Sum_probs=40.3

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI--------------HTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTT--------------TTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999874              478999999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=9.7e-14  Score=65.26  Aligned_cols=44  Identities=18%  Similarity=0.298  Sum_probs=39.9

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT--------------HSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTT--------------TCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            67789999999999999999999999999874              478999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=8.6e-14  Score=65.42  Aligned_cols=44  Identities=20%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGG--------------GTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            67789999999999999999999999999874              578999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.2e-13  Score=64.92  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=40.4

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHH--------------HSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            367789999999999999999999999999884              478999999887

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=7.6e-14  Score=65.64  Aligned_cols=41  Identities=29%  Similarity=0.372  Sum_probs=39.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            57899999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=9.7e-14  Score=65.21  Aligned_cols=45  Identities=18%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRV--------------HMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTT--------------TCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            467889999999999999999999999999874              578999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=8.8e-14  Score=65.37  Aligned_cols=45  Identities=20%  Similarity=0.390  Sum_probs=40.4

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTT--------------TTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHh--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999874              478999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.37  E-value=4.4e-13  Score=65.15  Aligned_cols=48  Identities=27%  Similarity=0.537  Sum_probs=42.0

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccC
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD   71 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~   71 (115)
                      .+++++||.|++|++.|.....|..|++.             .|.+++||+|+.|++.|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~-------------~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQ-------------VHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHH-------------TSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHH-------------hcCCCCCccCCCCCCCCCC
Confidence            46789999999999999999999999751             3478999999999999975

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=8.4e-14  Score=65.46  Aligned_cols=44  Identities=25%  Similarity=0.361  Sum_probs=39.9

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV--------------HTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTT--------------SCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHh--------------hCCCCCCCCCCC
Confidence            67789999999999999999999999999874              478999999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.37  E-value=7.6e-14  Score=65.65  Aligned_cols=40  Identities=33%  Similarity=0.430  Sum_probs=37.8

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6789999999999999999999999999999999999964

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=9.5e-14  Score=65.28  Aligned_cols=43  Identities=30%  Similarity=0.424  Sum_probs=39.1

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      |++ .|.+++||.|..|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCC-CCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            344 6789999999999999999999999999999999999964

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.37  E-value=1.5e-13  Score=64.57  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=39.8

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM--------------HTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGG--------------GCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            56789999999999999999999999999874              578999999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.6e-13  Score=64.54  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV--------------HTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHH--------------HHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHH--------------HcCCCCCCCCCC
Confidence            56789999999999999999999999999884              478999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.5e-13  Score=64.56  Aligned_cols=45  Identities=20%  Similarity=0.337  Sum_probs=40.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTT--------------TTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            467889999999999999999999999999874              478999999865

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.8e-13  Score=62.98  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|+
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578999999999999999999999999999999999984

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.2e-13  Score=64.88  Aligned_cols=40  Identities=33%  Similarity=0.534  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|+.
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             SCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             ccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            6789999999999999999999999999999999999963

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=9.1e-14  Score=65.37  Aligned_cols=40  Identities=35%  Similarity=0.501  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.+++||+|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            6 SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6789999999999999999999999999999999999963

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1e-13  Score=65.16  Aligned_cols=40  Identities=28%  Similarity=0.381  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            6789999999999999999999999999999999999964

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1e-13  Score=65.15  Aligned_cols=40  Identities=33%  Similarity=0.462  Sum_probs=37.8

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6789999999999999999999999999999999999964

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1e-13  Score=65.15  Aligned_cols=40  Identities=25%  Similarity=0.396  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            6789999999999999999999999999999999999863

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.3e-13  Score=64.82  Aligned_cols=40  Identities=28%  Similarity=0.421  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             cCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6789999999999999999999999999999999999963

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=7.7e-14  Score=65.60  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +|+++|++++||.|++|++.|.....|..|++              .|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~--------------~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR--------------VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGG--------------GGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHH--------------HcCCCCCCCCCCC
Confidence            46788999999999999999999999999887              4578999999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.2e-13  Score=64.93  Aligned_cols=40  Identities=30%  Similarity=0.460  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            6789999999999999999999999999999999999964

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.7e-13  Score=64.63  Aligned_cols=45  Identities=18%  Similarity=0.305  Sum_probs=40.1

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHH-HhcChhHHHHHHHHhhcCCCceecccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK-VHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~-~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      .|+++|++++||.|++|++.|.....|..|++ .|              .+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H--------------~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH--------------TGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTT--------------TTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhc--------------CCCCCCCCCCC
Confidence            36788999999999999999999999999987 55              68899999887

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.2e-13  Score=64.96  Aligned_cols=43  Identities=30%  Similarity=0.412  Sum_probs=39.0

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      |++ .|.+++||.|+.|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             ccc-CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            344 6789999999999999999999999999999999999963

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.1e-13  Score=64.96  Aligned_cols=40  Identities=28%  Similarity=0.486  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6789999999999999999999999999999999999963

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.2e-13  Score=64.94  Aligned_cols=40  Identities=30%  Similarity=0.435  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6789999999999999999999999999999999999963

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=64.64  Aligned_cols=40  Identities=35%  Similarity=0.474  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6789999999999999999999999999999999999964

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.7e-13  Score=64.42  Aligned_cols=40  Identities=33%  Similarity=0.492  Sum_probs=37.8

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6789999999999999999999999999999999999964

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.34  E-value=2.9e-14  Score=71.41  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=45.4

Q ss_pred             HHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhH
Q psy64             5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL   75 (115)
Q Consensus         5 l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l   75 (115)
                      |..|+++|++++||.|++||++|.....|.   +              .|.+++||.|+.||+.|.....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~--------------~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---L--------------FDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---H--------------EETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---h--------------hcCCCCCEECCCCCCccccCccc
Confidence            345788899999999999999999877665   3              56889999999999999877643

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.5e-13  Score=63.32  Aligned_cols=44  Identities=20%  Similarity=0.434  Sum_probs=39.4

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHH--------------HCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            67789999999999999999999999999884              478999999864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.8e-13  Score=63.66  Aligned_cols=39  Identities=26%  Similarity=0.310  Sum_probs=37.0

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.+++||.|+.|++.|.....|..|+.+|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            678999999999999999999999999999999999984

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2e-13  Score=63.46  Aligned_cols=39  Identities=31%  Similarity=0.458  Sum_probs=37.1

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.++++|.|+.|++.|.....|..|+.+|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            678999999999999999999999999999999999984

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.5e-13  Score=63.97  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      |++ .|.+++||.|+.|++.|.....|..|+.+|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGS-SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCC-SSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             Ccc-ccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344 678999999999999999999999999999999999984

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.3e-13  Score=64.77  Aligned_cols=43  Identities=30%  Similarity=0.368  Sum_probs=39.0

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      |++ .|.++++|.|+.|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             ccc-ccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444 6789999999999999999999999999999999999963

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.5e-13  Score=64.58  Aligned_cols=40  Identities=35%  Similarity=0.480  Sum_probs=37.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6789999999999999999999999999999999999963

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.3e-13  Score=64.77  Aligned_cols=40  Identities=33%  Similarity=0.484  Sum_probs=37.6

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6789999999999999999999999999999999999863

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.33  E-value=1.8e-12  Score=66.37  Aligned_cols=57  Identities=30%  Similarity=0.612  Sum_probs=50.2

Q ss_pred             cCCCCCeecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc--ccccccChhhHHHHHHHh
Q psy64            12 HTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        12 h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~--c~~~~~~~~~l~~h~~~h   82 (115)
                      ....++|.|..  |++.|.....|..|++.              |.++++|.|..  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRT--------------HTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHH--------------HSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHh--------------cCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            45678999998  99999999999999884              47899999964  999999999999998764

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.7e-13  Score=63.69  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=37.0

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.++++|.|+.||+.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            678999999999999999999999999999999999984

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.9e-13  Score=64.25  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=38.5

Q ss_pred             HHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        49 h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      |++ .|.+++||+|+.|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCC-CCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             ccc-ccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            444 678999999999999999999999999999999999986

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-13  Score=65.00  Aligned_cols=40  Identities=28%  Similarity=0.392  Sum_probs=37.5

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            6789999999999999999999999999999999999863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.7e-13  Score=64.37  Aligned_cols=39  Identities=28%  Similarity=0.556  Sum_probs=37.1

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.+++||+|+.|++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             SCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            678999999999999999999999999999999999985

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-13  Score=64.52  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=37.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            678999999999999999999999999999999999986

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.32  E-value=4.5e-13  Score=61.62  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=36.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      .|.+++||.|+.||+.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            57899999999999999999999999999999999987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5.7e-13  Score=62.57  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=39.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHH--------------HSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHh--------------cCCCCCCCCCC
Confidence            367889999999999999999999999999884              47899999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.32  E-value=1.2e-12  Score=61.09  Aligned_cols=43  Identities=19%  Similarity=0.405  Sum_probs=38.8

Q ss_pred             HhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccccc
Q psy64            10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCD   66 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~   66 (115)
                      ..|++++||.|++|++.|.....|..|++.              |.++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--------------H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRS--------------HDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHH--------------HSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHH--------------ccCCCCCCCcCCC
Confidence            358899999999999999999999999884              4789999999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=62.38  Aligned_cols=38  Identities=26%  Similarity=0.491  Sum_probs=36.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            67899999999999999999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.8e-13  Score=64.38  Aligned_cols=40  Identities=25%  Similarity=0.415  Sum_probs=37.6

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            6789999999999999999999999999999999999863

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.9e-13  Score=64.27  Aligned_cols=39  Identities=28%  Similarity=0.406  Sum_probs=37.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.++++|+|+.|++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            6 SGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            678999999999999999999999999999999999996

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.31  E-value=6.4e-13  Score=62.38  Aligned_cols=44  Identities=20%  Similarity=0.429  Sum_probs=39.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHH--------------HTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            367889999999999999999999999999884              47899999874

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.31  E-value=5.8e-13  Score=61.29  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=37.1

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      |+++|++++||.|++|+++|.....|..|++.              |.+++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRT--------------HAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGG--------------GCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHh--------------cCCCCCCCCC
Confidence            45789999999999999999999999999874              4788999885

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.5e-13  Score=63.18  Aligned_cols=39  Identities=15%  Similarity=0.230  Sum_probs=36.8

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            678999999999999999999999999999999999984

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.8e-13  Score=63.56  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=37.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.+++||.|+.|++.|.....|..|+.+|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            678999999999999999999999999999999999986

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.9e-13  Score=63.59  Aligned_cols=39  Identities=31%  Similarity=0.506  Sum_probs=37.2

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.++++|.|..|++.|.....|..|+++|++++||.|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            678999999999999999999999999999999999996

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=8.3e-13  Score=61.16  Aligned_cols=40  Identities=23%  Similarity=0.177  Sum_probs=37.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            5688999999999999999999999999999999999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.5e-13  Score=63.85  Aligned_cols=40  Identities=30%  Similarity=0.351  Sum_probs=37.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcC-CCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG-EKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~-~~~~~C~~   92 (115)
                      .|.+++||.|..|++.|.....|..|+++|++ ++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67899999999999999999999999999999 99999863

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.9e-13  Score=62.95  Aligned_cols=38  Identities=26%  Similarity=0.483  Sum_probs=35.9

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      .|.+++||.|+.||+.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            67899999999999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=5.8e-13  Score=61.96  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=36.9

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            578899999999999999999999999999999999984

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.7e-13  Score=61.86  Aligned_cols=44  Identities=20%  Similarity=0.380  Sum_probs=39.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT--------------HSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHH--------------HCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHH--------------cCCCCCCCCCC
Confidence            367789999999999999999999999999884              47899999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.9e-13  Score=61.85  Aligned_cols=44  Identities=27%  Similarity=0.482  Sum_probs=39.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHH--------------HCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            467889999999999999999999999999884              47899999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.7e-13  Score=60.64  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=37.0

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      |+++|++++||.|++|+++|.....|..|++.              |.+++||+|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKM--------------HTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHH--------------TSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHH--------------hCCCCCCCCC
Confidence            45789999999999999999999999999884              4788999874

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.6e-13  Score=61.86  Aligned_cols=44  Identities=18%  Similarity=0.394  Sum_probs=39.1

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.|              .+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H--------------~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH--------------TGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHH--------------HSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhc--------------CCCCCCCCCC
Confidence            3678899999999999999999999999998844              7889999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.3e-13  Score=62.41  Aligned_cols=44  Identities=20%  Similarity=0.316  Sum_probs=39.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTT--------------TSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            367889999999999999999999999999874              47899999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.1e-12  Score=61.52  Aligned_cols=40  Identities=33%  Similarity=0.439  Sum_probs=37.5

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            5788999999999999999999999999999999999963

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=9.6e-13  Score=61.70  Aligned_cols=44  Identities=23%  Similarity=0.391  Sum_probs=39.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHT--------------SCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            367789999999999999999999999999884              47899999874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.7e-13  Score=61.98  Aligned_cols=38  Identities=29%  Similarity=0.525  Sum_probs=35.9

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      .|.+++||+|+.|++.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            57889999999999999999999999999999999987

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.29  E-value=5.5e-13  Score=64.78  Aligned_cols=37  Identities=16%  Similarity=0.277  Sum_probs=34.0

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCcee
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI   89 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~   89 (115)
                      .|.++++|.|..||+.|...+.|..|+++|++++||.
T Consensus        18 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           18 RSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             HHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             hcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            5688999999999999999999999999999999874

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.8e-13  Score=63.62  Aligned_cols=39  Identities=26%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            678999999999999999999999999999999999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1e-12  Score=61.34  Aligned_cols=40  Identities=35%  Similarity=0.451  Sum_probs=37.5

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .|.++++|+|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            5788999999999999999999999999999999999863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=9.3e-13  Score=61.79  Aligned_cols=44  Identities=20%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI--------------HRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGG--------------GCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhH--------------hCCCCCCCCCC
Confidence            367889999999999999999999999999874              47899999874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=9.6e-13  Score=61.76  Aligned_cols=43  Identities=28%  Similarity=0.431  Sum_probs=38.5

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV--------------HTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHH--------------CSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            67789999999999999999999999999885              47899999874

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=61.55  Aligned_cols=44  Identities=30%  Similarity=0.516  Sum_probs=39.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV--------------HTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHH--------------HSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            467889999999999999999999999999884              47889999874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=61.62  Aligned_cols=44  Identities=23%  Similarity=0.355  Sum_probs=39.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS--------------HTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHH--------------HTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHH--------------cCCCCCCCCCC
Confidence            467889999999999999999999999999884              47889999874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-12  Score=59.76  Aligned_cols=38  Identities=32%  Similarity=0.476  Sum_probs=36.0

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      .|.+++||+|+.|++.|.....|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            57889999999999999999999999999999999987

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.3e-13  Score=61.96  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTT--------------TTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHh--------------hCCCCCCCCCC
Confidence            367889999999999999999999999999874              47899999874

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=60.51  Aligned_cols=43  Identities=23%  Similarity=0.422  Sum_probs=38.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      .|+++|++++||.|++|++.|.....|..|++.|              .+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H--------------~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH--------------TGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHT--------------TTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHh--------------CCCCCCCCC
Confidence            3678899999999999999999999999998854              788999884

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.1e-13  Score=62.45  Aligned_cols=39  Identities=23%  Similarity=0.474  Sum_probs=36.7

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|.
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            678999999999999999999999999999999999883

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.7e-13  Score=61.36  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      .|.+++||.|..|++.|.....|..|+++|++++||.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            67899999999999999999999999999999999986

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=61.72  Aligned_cols=41  Identities=24%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             hhcCCCceecc--cccccccChhhHHHHHHHhcCCCceeEEee
Q psy64            53 VHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKYIFIVV   93 (115)
Q Consensus        53 ~h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C   93 (115)
                      .|.++++|.|.  .|++.|.....|..|+++|++++||.|+.|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57889999998  899999999999999999999999999887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=2.3e-12  Score=61.03  Aligned_cols=43  Identities=19%  Similarity=0.370  Sum_probs=38.4

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccc
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDR   67 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~   67 (115)
                      .+.+++||.|++|++.|.....|..|++.              |.+++||.|..|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLS--------------HSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGG--------------SCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHh--------------cCCCCCccCCCCCC
Confidence            46788999999999999999999999874              57899999999985

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=9.1e-13  Score=61.78  Aligned_cols=44  Identities=25%  Similarity=0.511  Sum_probs=38.8

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++              .|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~--------------~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR--------------IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGG--------------GTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHH--------------hcCCCCCcCCCC
Confidence            36788999999999999999999999999987              457899999874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=61.09  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHH--------------HTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHH--------------cCCCCCCCCCC
Confidence            367789999999999999999999999999884              47899999874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8.4e-13  Score=61.34  Aligned_cols=43  Identities=23%  Similarity=0.359  Sum_probs=38.1

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      .|+++|++++||.|++|+++|.....|..|++.              |.+++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKT--------------HSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTT--------------SSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHH--------------cCCCCCCCCC
Confidence            367889999999999999999999999999874              4788999884

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=61.53  Aligned_cols=43  Identities=19%  Similarity=0.431  Sum_probs=38.5

Q ss_pred             HHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         9 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +++|++++||.|++|++.|.....|..|++.              |.+++||.|+.|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI--------------HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTT--------------TSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            4678999999999999999999999999874              478999999887

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8.8e-13  Score=61.86  Aligned_cols=44  Identities=23%  Similarity=0.398  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGG--------------GCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHH--------------cCCCCCCCCCC
Confidence            467889999999999999999999999999874              57899999874

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=61.58  Aligned_cols=44  Identities=18%  Similarity=0.367  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTT--------------TSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHH--------------cCCCCCCCCCC
Confidence            367789999999999999999999999999874              57899999974

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.5e-12  Score=60.44  Aligned_cols=43  Identities=21%  Similarity=0.401  Sum_probs=38.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      +|+++|++++||.|++|++.|.....|..|++.|              .+++||+|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H--------------~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH--------------ARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHC--------------CCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhc--------------CCCCCCCCC
Confidence            4678899999999999999999999999998854              788999884

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.2e-12  Score=61.37  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI--------------HTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGG--------------GSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            467889999999999999999999999999874              47899999874

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=5e-13  Score=71.97  Aligned_cols=56  Identities=20%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             CCceecccccccccChhhHHHHHHH-hcCCCc--------eeEEeecceehhhhhhccCCccccc
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRI-HTGEKK--------YIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~-h~~~~~--------~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ...+.|..|++.|.....|..|++. |.++++        |.|+.|++.|.....|..|+++|.+
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            3457899999999999999999998 999888        9999999999999999999998864

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=61.57  Aligned_cols=43  Identities=19%  Similarity=0.361  Sum_probs=38.3

Q ss_pred             HHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         9 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      +++|++++||.|++|++.|.....|..|++.|              .+++||.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H--------------~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITH--------------TREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHH--------------HHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHc--------------CCCCCCCCCCC
Confidence            45789999999999999999999999998744              68899999987

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.2e-12  Score=61.39  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=38.8

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTT--------------TSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHH--------------cCCCCCCCCCC
Confidence            367889999999999999999999999999874              47899999874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=61.54  Aligned_cols=44  Identities=27%  Similarity=0.425  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||+|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI--------------HTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTT--------------TSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            367889999999999999999999999999874              47899999874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.7e-13  Score=61.72  Aligned_cols=44  Identities=23%  Similarity=0.426  Sum_probs=38.8

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTT--------------TSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHh--------------cCCCCCCCCCC
Confidence            367789999999999999999999999999874              47899999874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-12  Score=61.49  Aligned_cols=44  Identities=20%  Similarity=0.403  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTT--------------TCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            467889999999999999999999999999874              47899999874

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.25  E-value=1.9e-12  Score=59.43  Aligned_cols=41  Identities=15%  Similarity=0.343  Sum_probs=36.4

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceec
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC   62 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C   62 (115)
                      |+++|++++||.|++|+++|.....|..|++.|              .+++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H--------------~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC--------------SQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHT--------------TCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhc--------------CCCCCCCC
Confidence            467899999999999999999999999998854              78899887

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=61.43  Aligned_cols=44  Identities=23%  Similarity=0.442  Sum_probs=38.7

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGG--------------GTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHh--------------cCCCCCCCCCC
Confidence            467889999999999999999999999999874              57889999874

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.3e-12  Score=60.08  Aligned_cols=41  Identities=22%  Similarity=0.434  Sum_probs=36.4

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceec
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC   62 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C   62 (115)
                      |+++|++++||.|++|+++|.....|..|++.              |.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI--------------HTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHH--------------HHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHH--------------cCCCCCCCC
Confidence            56789999999999999999999999999874              478889887

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=60.73  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=38.0

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT--------------HTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTT--------------TCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhh--------------cCCCCCCCCC
Confidence            467889999999999999999999999999874              4788999884

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=61.72  Aligned_cols=43  Identities=28%  Similarity=0.509  Sum_probs=38.2

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV--------------HSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTT--------------TTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHh--------------cCCCCCCCCCC
Confidence            56789999999999999999999999999874              47899999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=60.94  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=38.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      .|+++|++++||.|++|++.|.....|..|++.|              .+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H--------------~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH--------------ERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHH--------------HHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHh--------------CCCCCCCCC
Confidence            4678899999999999999999999999998854              678999986

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.8e-12  Score=60.79  Aligned_cols=44  Identities=25%  Similarity=0.494  Sum_probs=38.7

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +|+++|++++||.|++|++.|.....|..|++.|              .+++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H--------------~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH--------------SREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHH--------------HHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHh--------------CCCCCCCCCC
Confidence            3678899999999999999999999999998854              6889999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.5e-12  Score=61.12  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=38.5

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcC-CCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEK-IRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~-~~~~~C~~   64 (115)
                      .|+++|++++||.|++|+++|.....|..|++.              |.+ ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERI--------------HTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTT--------------CCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHH--------------cCCCCCCCCCCC
Confidence            367889999999999999999999999999874              478 89999863

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.7e-12  Score=60.87  Aligned_cols=44  Identities=20%  Similarity=0.432  Sum_probs=38.8

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI--------------HTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTT--------------SCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            367889999999999999999999999999874              47899999864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.7e-12  Score=60.29  Aligned_cols=43  Identities=30%  Similarity=0.484  Sum_probs=37.8

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKT--------------HAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGG--------------GCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHH--------------cCCCCCcCCC
Confidence            467889999999999999999999999999874              4788999884

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=3.5e-12  Score=59.22  Aligned_cols=42  Identities=14%  Similarity=0.193  Sum_probs=37.2

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||+|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQAL--------------HAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHH--------------HTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHH--------------HCCCCCCCCC
Confidence            56789999999999999999999999999884              4788999884

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.9e-12  Score=60.76  Aligned_cols=43  Identities=23%  Similarity=0.450  Sum_probs=38.0

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV--------------HSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGG--------------SCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH--------------hCCCCCCCCCC
Confidence            56789999999999999999999999999874              47899999874

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.7e-13  Score=69.84  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=54.6

Q ss_pred             HHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            45 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        45 ~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|..|++ .+.+.+|+.|+.|++.|. ...|..|. .+.+++|+.|+.|++.|. ...|..|+++|..
T Consensus         4 ~L~~H~~-~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            4 GSSGHEE-TECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCSCCCC-CCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHHhhCc-ccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccC
Confidence            3455555 578899999999999995 88999999 899999999999999987 5899999887754

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.2e-12  Score=60.15  Aligned_cols=41  Identities=22%  Similarity=0.412  Sum_probs=36.3

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceec
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC   62 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C   62 (115)
                      |+++|++++||.|++|+++|.....|..|++              .|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~--------------~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR--------------VHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGG--------------GTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHH--------------HhCCCCCCCC
Confidence            6678999999999999999999999998877              4578899887

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.6e-12  Score=59.76  Aligned_cols=41  Identities=17%  Similarity=0.490  Sum_probs=36.1

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceec
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC   62 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C   62 (115)
                      |+++|++++||.|++|++.|.....|..|++.              |.+++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI--------------HTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTT--------------TSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHh--------------cCCCCCCCC
Confidence            56789999999999999999999999999874              478888876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.4e-12  Score=59.79  Aligned_cols=43  Identities=23%  Similarity=0.399  Sum_probs=37.8

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      +|+++|++++||.|++|++.|.....|..|++.              |.+++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI--------------HTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHH--------------HCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHH--------------hCCCCCCCCC
Confidence            467889999999999999999999999999884              4788999873

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=6.7e-13  Score=68.86  Aligned_cols=67  Identities=24%  Similarity=0.301  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHh
Q psy64             3 RQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus         3 ~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      ++|..|++.+.+++|+.|..|++.|. ...|..|. .+              .+++|+.|+.|++.|. ...|..|..++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~--------------c~~~~~~C~~C~~~~~-~~~l~~H~~~c   65 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DY--------------CGARTELCGNCGRNVL-VKDLKTHPEVC   65 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HH--------------HHHCEEECSSSCCEEE-TTGGGTHHHHB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hH--------------cCCCceEcccCCCcCc-HHHHHHHHHHc
Confidence            45677888899999999999999995 77788776 33              6789999999999877 48899999998


Q ss_pred             cCCC
Q psy64            83 TGEK   86 (115)
Q Consensus        83 ~~~~   86 (115)
                      .+++
T Consensus        66 ~~~~   69 (75)
T 2d9k_A           66 GREG   69 (75)
T ss_dssp             TTBS
T ss_pred             cCCc
Confidence            8764

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.6e-11  Score=56.70  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             HhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64            10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +.|++++||.|++|++.|.....|..|++.              |.+++||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQ--------------THSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHH--------------HTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHh--------------hCCCCCccCCC
Confidence            468899999999999999999999999884              47899999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.5e-12  Score=58.09  Aligned_cols=42  Identities=21%  Similarity=0.412  Sum_probs=36.9

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceec
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC   62 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C   62 (115)
                      .|+++|++++||.|++|++.|.....|..|++.              |.+++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT--------------HAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGG--------------GSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhH--------------hcCCCCCCC
Confidence            367889999999999999999999999999874              478888876

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.3e-11  Score=57.76  Aligned_cols=42  Identities=17%  Similarity=0.220  Sum_probs=37.0

Q ss_pred             HHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         9 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      +++|++++||.|++|++.|.....|..|++.              |.+++||.|..
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRI--------------HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHH--------------HSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHH--------------hCCCCCCCCCC
Confidence            4578999999999999999999999999884              47899999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7.3e-12  Score=59.08  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=38.7

Q ss_pred             HHHhcCCCCCeecC--CChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccc
Q psy64             8 HMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVC   65 (115)
Q Consensus         8 h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c   65 (115)
                      |.++|++++||.|.  .|++.|.....|..|++.              |.+++||+|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS--------------HSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTT--------------SCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHH--------------hCCCCCCCCCCC
Confidence            34678999999998  899999999999999874              578999999887

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.15  E-value=1.4e-11  Score=55.63  Aligned_cols=37  Identities=24%  Similarity=0.475  Sum_probs=33.5

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcCCCceeE
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIF   90 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C   90 (115)
                      |.+++||.|..||+.|...+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4678999999999999999999999999999999864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2e-11  Score=56.87  Aligned_cols=42  Identities=24%  Similarity=0.444  Sum_probs=36.8

Q ss_pred             HHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64             9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus         9 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .++|++++||.|++|++.|.....|..|++.              |.+++||.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRI--------------HTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTT--------------TSSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHH--------------hCCCCCCCCCC
Confidence            4578999999999999999999999999874              47899999864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=3.4e-11  Score=60.75  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             hcCCCceeccc--ccccccChhhHHHHH-HHhcCCCceeEEe
Q psy64            54 HEKIRDFQCKV--CDRAFFDVYNLKLHM-RIHTGEKKYIFIV   92 (115)
Q Consensus        54 h~~~~~~~C~~--c~~~~~~~~~l~~h~-~~h~~~~~~~C~~   92 (115)
                      ..++|||+|..  |+++|.....|..|+ ++|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            47899999975  999999999999997 6899999999853

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.4e-11  Score=55.40  Aligned_cols=39  Identities=21%  Similarity=0.383  Sum_probs=34.4

Q ss_pred             HhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceec
Q psy64            10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC   62 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C   62 (115)
                      ++|++++||.|++|++.|.....|..|++.              |.+++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERI--------------HTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGG--------------CCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHH--------------hCCCCCcCC
Confidence            468999999999999999999999999874              478899887

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.12  E-value=8.8e-13  Score=64.05  Aligned_cols=47  Identities=6%  Similarity=-0.067  Sum_probs=42.4

Q ss_pred             cccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            66 DRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        66 ~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ++.|.....|..|+++|++++||.|++|++.|.....|..|+++|.+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   49 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            35677788888999999999999999999999999999999998864

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.11  E-value=6e-12  Score=67.14  Aligned_cols=57  Identities=18%  Similarity=0.086  Sum_probs=49.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCcccccc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEILC  113 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~~  113 (115)
                      .|.+++||.|+.|++.|.....|..|+++|++++||.|..|    .....|..|.++|.+.
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~----~~~~~~~~~~~~~~~~   75 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQ----ERRKQLLSKQKYADGA   75 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCC----SCCCCCCCCCCCCCCS
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchh----hhHHHHHhhhcccccc
Confidence            57889999999999999999999999999999999999655    4566677888877664

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.04  E-value=1.5e-10  Score=50.69  Aligned_cols=34  Identities=21%  Similarity=0.491  Sum_probs=29.8

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcCCCc
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      |.++++|.|..|++.|.....|..|++.|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5678899999999999999999999999988875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.03  E-value=1.8e-10  Score=50.54  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=28.4

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcCCCc
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      |.+++||.|..|++.|.....|..|++.|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5678888888888888888888888888888765

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.6e-10  Score=51.31  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=31.5

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCCc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      .|.+++||.|..|++.|.....|..|+++|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            46788999999999999999999999999998875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.03  E-value=1.5e-10  Score=50.31  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCcee
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI   89 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~   89 (115)
                      +||.|+.||+.|...+.|..|+.+|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58999999999999999999999999999985

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=3.1e-12  Score=68.27  Aligned_cols=58  Identities=16%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             HHhcCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcC
Q psy64             9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus         9 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      .++|++++||.|++|++.|.....|..|++.|              .+++||+|..|.    ....+..|.+++.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~H--------------t~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIH--------------NEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHH--------------HHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHh--------------CCCCCcccchhh----hHHHHHhhhccccc
Confidence            34689999999999999999999999998854              678899998765    34455566777766

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.96  E-value=4.9e-10  Score=50.38  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=31.5

Q ss_pred             cCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceec
Q psy64            12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC   62 (115)
Q Consensus        12 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C   62 (115)
                      |++++||.|++|++.|.....|..|++.|              .+++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H--------------~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVH--------------RRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTT--------------CCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHc--------------CCCcccee
Confidence            57889999999999999999999998854              67888764

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.95  E-value=3.3e-10  Score=50.26  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=25.1

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      .|.+++||+|+.|++.|.....|..|+++|+++
T Consensus         5 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             cCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            567777888888888888888888887777654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=4.7e-10  Score=50.08  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=31.8

Q ss_pred             hcCCCceecc--cccccccChhhHHHHHHHhcCCCce
Q psy64            54 HEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKY   88 (115)
Q Consensus        54 h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~~~   88 (115)
                      |.+++||.|.  .|++.|.....|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3578999999  5999999999999999999999987

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.93  E-value=2.4e-10  Score=50.76  Aligned_cols=33  Identities=33%  Similarity=0.535  Sum_probs=30.4

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      |+++|++++||.|++|++.|.....|..|++.|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            567899999999999999999999999998866

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=1.2e-09  Score=55.12  Aligned_cols=42  Identities=24%  Similarity=0.465  Sum_probs=35.0

Q ss_pred             cCCCCCeecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccccc
Q psy64            12 HTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCD   66 (115)
Q Consensus        12 h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~   66 (115)
                      .++++||.|..  |+++|.....|..|++.             .|++++|+.|.+-+
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rr-------------iHTgEKP~~~~~~~   65 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQA-------------VHKSDLPAFSAEVE   65 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHH-------------HSSSCCCCCCCSCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhh-------------hCCCCCCccccccc
Confidence            57899999975  99999999999999731             45899999987643

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1e-09  Score=48.31  Aligned_cols=34  Identities=35%  Similarity=0.539  Sum_probs=28.8

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      .|.+++||+|+.|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4678889999999999999999999988888764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.1e-09  Score=48.22  Aligned_cols=34  Identities=35%  Similarity=0.538  Sum_probs=28.0

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      .|.+++||+|+.|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4677888888888888888888888888887764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=8.1e-10  Score=48.96  Aligned_cols=31  Identities=19%  Similarity=0.611  Sum_probs=28.5

Q ss_pred             HhcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64            10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ++|++++||.|++|+++|.....|..|++.|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h   32 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTN   32 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHH
Confidence            4689999999999999999999999999865

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.5e-09  Score=47.70  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      .|.++++|.|+.|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4578899999999999999999999999998874

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.4e-09  Score=48.18  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=28.2

Q ss_pred             hhcCCCceecccccccccCh-hhHHHHHHHhcCCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDV-YNLKLHMRIHTGEK   86 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~-~~l~~h~~~h~~~~   86 (115)
                      .|.+++||.|+.|++.|... ..|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            46778888999999988888 88888888888764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=2.1e-09  Score=47.29  Aligned_cols=34  Identities=35%  Similarity=0.599  Sum_probs=29.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      .+.+++||.|+.|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4567889999999999999999999999998764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.6e-09  Score=47.73  Aligned_cols=33  Identities=21%  Similarity=0.446  Sum_probs=23.9

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcCCC
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      |.+++||.|..|++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            456777777777777777777777777776653

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=2e-09  Score=48.34  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=25.6

Q ss_pred             hcCCCceeccc--ccccccChhhHHHHHHHhcCC
Q psy64            54 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        54 h~~~~~~~C~~--c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      +.+++||+|+.  |++.|...+.|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46778888875  888888888888888888765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.83  E-value=3.6e-09  Score=46.12  Aligned_cols=30  Identities=23%  Similarity=0.471  Sum_probs=27.5

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +|++++||.|++|++.|.....|..|++.|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h   30 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREV   30 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHH
Confidence            378899999999999999999999999866

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.82  E-value=3.4e-09  Score=46.26  Aligned_cols=30  Identities=43%  Similarity=0.824  Sum_probs=27.4

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +|++++||.|++|++.|.....|..|++.|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H   30 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHc
Confidence            478999999999999999999999998865

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.81  E-value=6.5e-10  Score=49.35  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             hcCCCceecccccccccChhhHHHHH
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHM   79 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~   79 (115)
                      ..+++||+|++||+.|...+.|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            36889999999999999999999998

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.5e-09  Score=48.24  Aligned_cols=31  Identities=19%  Similarity=0.445  Sum_probs=28.3

Q ss_pred             HhcCCCCCeecCCChhhccChhhHHHH-HHHh
Q psy64            10 AVHTTDRPFVCNMCPSTFKLKKHLRQH-YKVH   40 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~~~l~~h-~~~h   40 (115)
                      ++|++++||.|+.|+++|.....|..| ++.|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            468999999999999999999999999 7765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.80  E-value=2.5e-09  Score=50.37  Aligned_cols=34  Identities=18%  Similarity=0.547  Sum_probs=28.3

Q ss_pred             hcCCCceecccccccccChhhHHHHHH-HhcCCCc
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMR-IHTGEKK   87 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~-~h~~~~~   87 (115)
                      |++++||.|..||+.|.....|..|++ +|+++.+
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            578899999999999999999999999 8988754

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.6e-09  Score=46.95  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=23.1

Q ss_pred             hhcCCCceecccccccccChhhHHHH-HHHhcCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLH-MRIHTGE   85 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h-~~~h~~~   85 (115)
                      .|.+++||+|+.|++.|.....|..| +..|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            35667777777777777777777777 6666653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=5.7e-10  Score=49.21  Aligned_cols=32  Identities=3%  Similarity=-0.129  Sum_probs=29.4

Q ss_pred             HhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            81 IHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        81 ~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      .|++++||.|+.|++.|.....|..|+++|..
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            47889999999999999999999999999864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=7e-09  Score=46.51  Aligned_cols=31  Identities=26%  Similarity=0.369  Sum_probs=27.7

Q ss_pred             hcCCCCCeecCC--ChhhccChhhHHHHHHHhc
Q psy64            11 VHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        11 ~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~   41 (115)
                      .+++++||.|+.  |+++|.....|..|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            367899999986  9999999999999999773

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.74  E-value=2.2e-10  Score=49.38  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=17.4

Q ss_pred             ceecccccccccChhhHHHHHHHhcCCCce
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKY   88 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~   88 (115)
                      ||+|..||+.|...+.|..|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            455556666665555555555555555554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.73  E-value=8.5e-09  Score=45.66  Aligned_cols=33  Identities=30%  Similarity=0.630  Sum_probs=27.7

Q ss_pred             hcCCCceecc--cccccccChhhHHHHHHHhcCCC
Q psy64            54 HEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        54 h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      |.+++||.|.  .||+.|...+.|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            5678889998  49999999999999988888764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=9.1e-09  Score=45.16  Aligned_cols=30  Identities=27%  Similarity=0.680  Sum_probs=27.9

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      .|++++||.|++|++.|.....|..|++.|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            578999999999999999999999999866

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=8.8e-09  Score=45.49  Aligned_cols=31  Identities=23%  Similarity=0.462  Sum_probs=28.3

Q ss_pred             HhcCCCCCeecCCChhhccCh-hhHHHHHHHh
Q psy64            10 AVHTTDRPFVCNMCPSTFKLK-KHLRQHYKVH   40 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~-~~l~~h~~~h   40 (115)
                      ++|++++||.|++|++.|... ..|..|++.|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            368899999999999999999 9999999866

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.70  E-value=1.3e-08  Score=43.96  Aligned_cols=25  Identities=36%  Similarity=0.810  Sum_probs=22.7

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|++|++.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H   25 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLH   25 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHh
Confidence            5899999999999999999998854

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.3e-08  Score=44.56  Aligned_cols=30  Identities=23%  Similarity=0.600  Sum_probs=27.9

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +|++++||.|++|++.|.....|..|++.|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            578999999999999999999999999866

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.70  E-value=1.5e-08  Score=44.97  Aligned_cols=29  Identities=34%  Similarity=0.746  Sum_probs=26.1

Q ss_pred             cCCCCCeecC--CChhhccChhhHHHHHHHh
Q psy64            12 HTTDRPFVCN--MCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        12 h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h   40 (115)
                      |++++||.|+  .|+++|.....|..|++.|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   31 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHh
Confidence            5789999999  5999999999999998855

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.69  E-value=1.8e-09  Score=44.47  Aligned_cols=25  Identities=4%  Similarity=-0.072  Sum_probs=13.4

Q ss_pred             CceeEEeecceehhhhhhccCCccc
Q psy64            86 KKYIFIVVKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        86 ~~~~C~~C~~~~~~~~~~~~h~~~h  110 (115)
                      +||.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4555555555555555555555444

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.69  E-value=1.2e-08  Score=42.43  Aligned_cols=29  Identities=31%  Similarity=0.701  Sum_probs=22.9

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +||.|+.||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            46788888888888888888888887653

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.69  E-value=1.3e-08  Score=42.48  Aligned_cols=30  Identities=30%  Similarity=0.671  Sum_probs=24.0

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCC
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      ++||.|..||+.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            367888888888888888888888887764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.69  E-value=9.7e-09  Score=48.30  Aligned_cols=31  Identities=32%  Similarity=0.791  Sum_probs=28.0

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHH-Hhc
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYK-VHL   41 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~-~h~   41 (115)
                      +|++++||.|.+|+++|.....|..|++ .|.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4789999999999999999999999998 774

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.67  E-value=1.9e-08  Score=41.70  Aligned_cols=29  Identities=55%  Similarity=0.875  Sum_probs=25.7

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +||.|+.||+.|.....|..|++.|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47899999999999999999999998764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=1.7e-08  Score=41.85  Aligned_cols=29  Identities=45%  Similarity=0.864  Sum_probs=25.3

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47899999999999999999999988764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.64  E-value=1.7e-08  Score=41.73  Aligned_cols=29  Identities=38%  Similarity=0.818  Sum_probs=25.4

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +||.|+.||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47899999999999999999999988764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.2e-08  Score=43.78  Aligned_cols=30  Identities=30%  Similarity=0.664  Sum_probs=27.7

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      .|++++||.|++|++.|.....|..|++.|
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            478899999999999999999999999866

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.64  E-value=2.2e-08  Score=41.73  Aligned_cols=30  Identities=30%  Similarity=0.624  Sum_probs=26.4

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK   87 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~   87 (115)
                      ++|.|..||+.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            478999999999999999999999988764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.64  E-value=3.6e-09  Score=43.76  Aligned_cols=25  Identities=32%  Similarity=0.764  Sum_probs=12.3

Q ss_pred             CceecccccccccChhhHHHHHHHh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      +||.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            3445555555555555555554444

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=2.9e-08  Score=43.47  Aligned_cols=30  Identities=30%  Similarity=0.773  Sum_probs=27.5

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      .|.+++||.|++|++.|.....|..|++.|
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            467899999999999999999999999866

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=2.4e-08  Score=50.20  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=33.8

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcCCCceeEEeec
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVK   94 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~   94 (115)
                      +.+++||+|..|++.|.....|..|+++|+++.. .+.++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~-~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL-QLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC-CCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc-cccccc
Confidence            5678999999999999999999999999998753 444444

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.62  E-value=1.9e-08  Score=44.53  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=24.1

Q ss_pred             cCCCCCeecCCChhhccChhhHHHHH
Q psy64            12 HTTDRPFVCNMCPSTFKLKKHLRQHY   37 (115)
Q Consensus        12 h~~~~~~~C~~C~~~~~~~~~l~~h~   37 (115)
                      +.+++||.|++||++|...+.|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            46899999999999999999999886

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.62  E-value=1.7e-08  Score=47.18  Aligned_cols=34  Identities=24%  Similarity=0.586  Sum_probs=28.2

Q ss_pred             hhcCCCceecc--cccccccChhhHHHHHHHhcCCC
Q psy64            53 VHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        53 ~h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      .|.+++||.|.  .||+.|...+.|..|+++|++++
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            46788889995  69999998888888988888764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.03  E-value=5e-09  Score=42.60  Aligned_cols=25  Identities=16%  Similarity=0.024  Sum_probs=20.4

Q ss_pred             CceeEEeecceehhhhhhccCCccc
Q psy64            86 KKYIFIVVKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        86 ~~~~C~~C~~~~~~~~~~~~h~~~h  110 (115)
                      +||.|+.|++.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4788888888888888888887776

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.60  E-value=3.8e-08  Score=41.85  Aligned_cols=30  Identities=30%  Similarity=0.571  Sum_probs=24.4

Q ss_pred             CCceecc--cccccccChhhHHHHHHHhcCCC
Q psy64            57 IRDFQCK--VCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        57 ~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      ++||.|.  .||+.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3678888  78888888888888888888764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.59  E-value=3.5e-08  Score=40.31  Aligned_cols=26  Identities=27%  Similarity=0.820  Sum_probs=23.9

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHh
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ++||.|+.||+.|.....|..|++.|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            47999999999999999999999876

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.58  E-value=3.4e-08  Score=41.75  Aligned_cols=29  Identities=45%  Similarity=0.801  Sum_probs=23.6

Q ss_pred             Cceecc--cccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCK--VCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +||.|+  .||+.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            478887  88888888888888888888764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=6.6e-09  Score=43.52  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=14.5

Q ss_pred             CceeEEeecceehhhhhhccCCcccc
Q psy64            86 KKYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        86 ~~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      +||.|+.|++.|.....|..|+++|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            45555555555555555555555543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.97  E-value=7.7e-09  Score=43.07  Aligned_cols=25  Identities=4%  Similarity=-0.093  Sum_probs=12.7

Q ss_pred             ceeEEeecceehhhhhhccCCcccc
Q psy64            87 KYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      ||.|+.|++.|.....|..|+++|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            4555555555555555555554443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.95  E-value=8.8e-09  Score=43.13  Aligned_cols=30  Identities=47%  Similarity=0.857  Sum_probs=27.0

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCC
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      ++||.|..||+.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            368999999999999999999999998764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.54  E-value=7.9e-09  Score=44.29  Aligned_cols=27  Identities=7%  Similarity=-0.021  Sum_probs=25.2

Q ss_pred             CceeEEeecceehhhhhhccCCccccc
Q psy64            86 KKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        86 ~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +||.|+.|++.|.....|..|+++|.+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~   27 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFI   27 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHcc
Confidence            589999999999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.54  E-value=5.7e-08  Score=39.65  Aligned_cols=25  Identities=28%  Similarity=0.675  Sum_probs=14.9

Q ss_pred             CceecccccccccChhhHHHHHHHh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      +||.|..||+.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4566666666666666666665554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.53  E-value=5e-08  Score=40.11  Aligned_cols=27  Identities=11%  Similarity=0.050  Sum_probs=25.1

Q ss_pred             CCceeEEeecceehhhhhhccCCcccc
Q psy64            85 EKKYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        85 ~~~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      ++||.|+.|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            579999999999999999999999885

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.52  E-value=4.6e-08  Score=40.04  Aligned_cols=27  Identities=22%  Similarity=0.566  Sum_probs=24.4

Q ss_pred             CCceecccccccccChhhHHHHHHHhc
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      ++||+|+.||+.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999998763

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.92  E-value=1.1e-08  Score=42.53  Aligned_cols=27  Identities=41%  Similarity=0.778  Sum_probs=24.4

Q ss_pred             CceecccccccccChhhHHHHHHHhcC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      +||.|..||+.|...+.|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            479999999999999999999988863

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.50  E-value=4.8e-08  Score=40.76  Aligned_cols=29  Identities=34%  Similarity=0.705  Sum_probs=22.3

Q ss_pred             CceecccccccccChhhHHHH-HHHhcCCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLH-MRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h-~~~h~~~~   86 (115)
                      +||.|+.||+.|...+.|..| +..|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            467888888888888888888 67777653

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.48  E-value=9.5e-08  Score=48.00  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=28.1

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhc
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      .+.+++||.|.+|++.|.....|..|+++|+
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            3678899999999999999999999999774

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.46  E-value=1.5e-07  Score=41.47  Aligned_cols=30  Identities=23%  Similarity=0.610  Sum_probs=27.0

Q ss_pred             hcCCCCCeecCC--ChhhccChhhHHHHHHHh
Q psy64            11 VHTTDRPFVCNM--CPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        11 ~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h   40 (115)
                      .|++++||.|.+  |++.|.....|..|++.|
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            378899999995  999999999999999866

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.46  E-value=7.6e-08  Score=39.14  Aligned_cols=26  Identities=31%  Similarity=0.851  Sum_probs=17.5

Q ss_pred             ceecccccccccChhhHHHHHHHhcC
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      ||+|..||+.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46677777777777777777766654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.46  E-value=1.6e-08  Score=41.98  Aligned_cols=27  Identities=7%  Similarity=-0.101  Sum_probs=25.0

Q ss_pred             CceeEEeecceehhhhhhccCCccccc
Q psy64            86 KKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        86 ~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +||.|+.|++.|.....|..|+++|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcC
Confidence            589999999999999999999999864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.43  E-value=1e-08  Score=47.94  Aligned_cols=34  Identities=29%  Similarity=0.623  Sum_probs=29.7

Q ss_pred             HHHHhcCCCCCeecC--CChhhccChhhHHHHHHHh
Q psy64             7 EHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h   40 (115)
                      .|...|++++||.|+  .|+++|.....|..|++.|
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            445668999999996  7999999999999999876

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=2.2e-07  Score=38.52  Aligned_cols=26  Identities=23%  Similarity=0.627  Sum_probs=23.8

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHh
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ++||.|+.|++.|.....|..|++.|
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTT
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHh
Confidence            47999999999999999999999866

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.35  E-value=3.1e-08  Score=42.16  Aligned_cols=28  Identities=11%  Similarity=-0.145  Sum_probs=25.7

Q ss_pred             CCceeEE--eecceehhhhhhccCCccccc
Q psy64            85 EKKYIFI--VVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        85 ~~~~~C~--~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ++||.|+  .|++.|.....|..|+++|.+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            5799999  899999999999999999864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.35  E-value=3.3e-08  Score=40.28  Aligned_cols=26  Identities=12%  Similarity=-0.054  Sum_probs=23.3

Q ss_pred             ceeEEeecceehhhhhhccCCccccc
Q psy64            87 KYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ||.|+.|++.|.....|..|+++|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            68999999999999999999998864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.69  E-value=5.6e-08  Score=39.29  Aligned_cols=26  Identities=27%  Similarity=0.685  Sum_probs=23.5

Q ss_pred             CceecccccccccChhhHHHHHHHhc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      +||.|+.||+.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999988763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.33  E-value=3.7e-07  Score=37.53  Aligned_cols=25  Identities=44%  Similarity=1.123  Sum_probs=23.0

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|++|++.|.....|..|++.|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHh
Confidence            5899999999999999999999866

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.28  E-value=5.9e-08  Score=40.95  Aligned_cols=27  Identities=4%  Similarity=-0.124  Sum_probs=24.8

Q ss_pred             CceeEE--eecceehhhhhhccCCccccc
Q psy64            86 KKYIFI--VVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        86 ~~~~C~--~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      +||.|+  .|++.|.....|..|+++|.+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            589998  999999999999999999875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=6.4e-07  Score=36.73  Aligned_cols=25  Identities=28%  Similarity=0.782  Sum_probs=23.0

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|++|++.|.....|..|++.|
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHh
Confidence            5899999999999999999999866

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.25  E-value=1.3e-07  Score=39.03  Aligned_cols=25  Identities=40%  Similarity=0.747  Sum_probs=14.5

Q ss_pred             ceecc--cccccccChhhHHHHHHHhc
Q psy64            59 DFQCK--VCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        59 ~~~C~--~c~~~~~~~~~l~~h~~~h~   83 (115)
                      +|.|.  .||+.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45555  56666666666666655554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.25  E-value=7.5e-07  Score=36.54  Aligned_cols=26  Identities=8%  Similarity=-0.110  Sum_probs=24.1

Q ss_pred             CceeEE--eecceehhhhhhccCCcccc
Q psy64            86 KKYIFI--VVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        86 ~~~~C~--~C~~~~~~~~~~~~h~~~h~  111 (115)
                      +||.|+  .|++.|.....|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            589999  99999999999999999885

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.24  E-value=6e-07  Score=36.78  Aligned_cols=25  Identities=28%  Similarity=0.668  Sum_probs=23.0

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|+.|+++|.....|..|++.|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHh
Confidence            5899999999999999999999866

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.22  E-value=8e-07  Score=36.68  Aligned_cols=25  Identities=20%  Similarity=0.486  Sum_probs=22.9

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|++|++.|.....|..|++.|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h   25 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHH
Confidence            4799999999999999999998866

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.21  E-value=9.4e-08  Score=39.82  Aligned_cols=27  Identities=11%  Similarity=-0.107  Sum_probs=24.5

Q ss_pred             CceeEEeecceehhhhhhccC-Cccccc
Q psy64            86 KKYIFIVVKKIIVVIYAKKFS-LDIEIL  112 (115)
Q Consensus        86 ~~~~C~~C~~~~~~~~~~~~h-~~~h~~  112 (115)
                      +||.|+.|++.|.....|..| +++|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccC
Confidence            589999999999999999999 788865

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.76  E-value=8.1e-06  Score=40.60  Aligned_cols=48  Identities=10%  Similarity=0.117  Sum_probs=40.9

Q ss_pred             ccccccccChhhHHHHH-HHhcCCC------ceeEE--eecceehhhhhhccCCccc
Q psy64            63 KVCDRAFFDVYNLKLHM-RIHTGEK------KYIFI--VVKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        63 ~~c~~~~~~~~~l~~h~-~~h~~~~------~~~C~--~C~~~~~~~~~~~~h~~~h  110 (115)
                      ..|++.|.....|..|+ ..|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            45999999999999998 4787665      79995  9999999999999998754

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.56  E-value=7.3e-06  Score=45.87  Aligned_cols=27  Identities=7%  Similarity=-0.028  Sum_probs=13.8

Q ss_pred             hcCCCceeEEeecceehhhhhhccCCc
Q psy64            82 HTGEKKYIFIVVKKIIVVIYAKKFSLD  108 (115)
Q Consensus        82 h~~~~~~~C~~C~~~~~~~~~~~~h~~  108 (115)
                      ++|++||.|..|++.|.+...|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            444455555555555555555555544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.18  E-value=9.3e-05  Score=41.42  Aligned_cols=30  Identities=33%  Similarity=0.438  Sum_probs=26.8

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHh
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      -++|.++|.|..|++.|.+...|..|.++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            468899999999999999999999997653

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.0022  Score=31.58  Aligned_cols=55  Identities=20%  Similarity=0.324  Sum_probs=39.5

Q ss_pred             cCCChhhccChhhHHHHHH-HhcChhHHHHHHHHhhcCCCceecc--cccccccChhhHHHHHHHh
Q psy64            20 CNMCPSTFKLKKHLRQHYK-VHLKMDTLENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        20 C~~C~~~~~~~~~l~~h~~-~h~~~~~l~~h~~~~h~~~~~~~C~--~c~~~~~~~~~l~~h~~~h   82 (115)
                      ...|++.|.+...|..|+. .|.....        -....+|.|.  .|++.+.....|..|++..
T Consensus         6 W~~C~~~f~~~~~l~~Hv~~~Hv~~~~--------~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLLKDHVSQDF--------KHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHHHHSCCCCC--------CCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCHHHHHHHHHhhccCccc--------CCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            4569999999999999974 4421100        0012379997  8999999999999998764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.61  E-value=0.0035  Score=35.23  Aligned_cols=83  Identities=11%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             CCCeecCCChhhccChhhHHHHH--HHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHhcCCCceeEEe
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHY--KVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIV   92 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~--~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~   92 (115)
                      .+++.|.+|...|.+...+..|.  +.|...  +..-.. ......+    .-++.+....    +.....+...|-|.+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~--v~~~~~-~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANK--VRRYMA-INQGEDS----VPAKKFKAAP----AEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHH--HHHHHH-HTTCCCC----CSCCCCSCCS----SCCSSCCCTTTEETT
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHH--HHHHhc-ccCcccC----CCCCccCCCc----cccccCCCCCeEcCC
Confidence            36788999999999999999998  444211  111100 0100111    0112222111    112345667789999


Q ss_pred             ecceehhhhhhccCCc
Q psy64            93 VKKIIVVIYAKKFSLD  108 (115)
Q Consensus        93 C~~~~~~~~~~~~h~~  108 (115)
                      |.+.|.+...+..|+.
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999888875

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.54  E-value=0.0024  Score=35.88  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             CCceecccccccccChhhHHHHH
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHM   79 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~   79 (115)
                      .+++.|..|...|.....+..|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHH
Confidence            35788999999999998888886

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.00  E-value=0.0044  Score=28.41  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             CCeecCCChhhccChhhHHHHHH
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYK   38 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~   38 (115)
                      -++.|+.|+..|+....|+.|++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            57899999999999999999987

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.84  E-value=0.0093  Score=27.34  Aligned_cols=28  Identities=25%  Similarity=0.277  Sum_probs=24.0

Q ss_pred             CceecccccccccChhhHHHHHHHhcCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      .+|.|+.|+..|.....|..|+.-..++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcc
Confidence            5789999999999999999999865544

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=95.07  E-value=0.023  Score=29.04  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=37.6

Q ss_pred             CCCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCC
Q psy64            56 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSL  107 (115)
Q Consensus        56 ~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~  107 (115)
                      ..-.|.|..||..... ..+..|.....+...|.|..|++.|.. .+...|.
T Consensus         7 ~MV~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Ht   56 (79)
T 1wjv_A            7 GMVFFTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHV   56 (79)
T ss_dssp             CCCEEEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCC
T ss_pred             ceeEEEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeCC-CCEeCEe
Confidence            3456899999976554 467788776666678999999999985 5566664

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.92  E-value=0.056  Score=31.60  Aligned_cols=52  Identities=12%  Similarity=0.206  Sum_probs=34.1

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCcccc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      .+..|+.|+..+ ....+..|....-..++-.|+.|+..+.. .++..|..++.
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~  160 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCP  160 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCC
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCc
Confidence            456777777766 44556777776666777778888776654 35556655544

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=94.27  E-value=0.013  Score=30.02  Aligned_cols=50  Identities=20%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             CeecCCChhhccChhhHHHHHHH-------hcChhHHHHHHHHhhcCCCceecccccccccCh
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKV-------HLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV   72 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~-------h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~   72 (115)
                      -.+|++||.+..+.. |...|-.       ...+..+....     .+-.|+||.||.-|...
T Consensus         8 ~~~~PlCG~~L~W~e-LIeQML~~en~~ei~kDr~~Fl~~~-----e~F~FkCP~CgEEFyG~   64 (95)
T 2k5c_A            8 MAKCPICGSPLKWEE-LIEEMLIIENFEEIVKDRERFLAQV-----EEFVFKCPVCGEEFYGK   64 (95)
T ss_dssp             CEECSSSCCEECHHH-HHHHSTTCSTHHHHTTCHHHHHHHH-----HHSEEECTTTCCEEETT
T ss_pred             cccCCcCCCccCHHH-HHHHHHhhccHHHHHhhHHHHHHHH-----HHHhhcCCCccHHHhcc
Confidence            357999999988654 4444321       11333333222     24578999999877654

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=93.44  E-value=0.016  Score=35.22  Aligned_cols=28  Identities=14%  Similarity=0.144  Sum_probs=21.6

Q ss_pred             CCCceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            56 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        56 ~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      +...|.|+.||..+.             |+.|+.|++|+..
T Consensus       168 ~~~~~~C~~CG~i~~-------------g~~p~~CP~C~~~  195 (202)
T 1yuz_A          168 DDKFHLCPICGYIHK-------------GEDFEKCPICFRP  195 (202)
T ss_dssp             SCCEEECSSSCCEEE-------------SSCCSBCTTTCCB
T ss_pred             CCcEEEECCCCCEEc-------------CcCCCCCCCCCCC
Confidence            345789999998765             2568999999864

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=92.94  E-value=0.11  Score=26.60  Aligned_cols=52  Identities=21%  Similarity=0.410  Sum_probs=35.7

Q ss_pred             cCCCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHH
Q psy64            12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM   79 (115)
Q Consensus        12 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~   79 (115)
                      +.....|.|+.||.+++-+ .+..|..              .-.+...|.|..|++.|.... ++.|.
T Consensus         5 ~~~MV~F~C~~Cgd~lKK~-kv~~H~~--------------~Cr~~~~~SCIDC~~~F~~~~-y~~Ht   56 (79)
T 1wjv_A            5 SSGMVFFTCNACGESVKKI-QVEKHVS--------------NCRNCECLSCIDCGKDFWGDD-YKSHV   56 (79)
T ss_dssp             SCCCCEEEESSSCCEEETT-HHHHHHH--------------HCTTCCEEEETTTTEEEEGGG-TTTCC
T ss_pred             CCceeEEEcCCCCCeeecc-cchhHHh--------------hCCCCCcEEecccCCeeCCCC-EeCEe
Confidence            3445679999999988754 5666653              223445689999999998643 44453

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=92.87  E-value=0.0052  Score=27.17  Aligned_cols=22  Identities=9%  Similarity=0.040  Sum_probs=9.6

Q ss_pred             eeEEeecceehhhhhhccCCccc
Q psy64            88 YIFIVVKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        88 ~~C~~C~~~~~~~~~~~~h~~~h  110 (115)
                      |.|+.|++.+.. ..+..|..+|
T Consensus        10 ~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A           10 VPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             EECTTTCCEEEG-GGHHHHHHHH
T ss_pred             cccccccCcCCc-ccccchhhHH
Confidence            444444444444 2334444443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.85  E-value=0.1  Score=22.23  Aligned_cols=23  Identities=26%  Similarity=0.659  Sum_probs=20.7

Q ss_pred             CeecCCChhhccChhhHHHHHHH
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKV   39 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~   39 (115)
                      .|.|++|.+.|.+...|..|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            48999999999999999999764

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=91.92  E-value=0.02  Score=26.27  Aligned_cols=37  Identities=11%  Similarity=0.209  Sum_probs=21.9

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      +.|+|..||..+.......  .....-..-|.|++|+..
T Consensus         3 ~~y~C~vCGyvyd~~~Gd~--t~f~~lP~dw~CP~Cg~~   39 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPAEHDN--VPFDQLPDDWCCPVCGVS   39 (46)
T ss_dssp             CCEEETTTCCEECGGGGTT--CCGGGSCTTCBCTTTCCB
T ss_pred             CEEECCCCCeEEeCCcCCC--cchhhCCCCCcCcCCCCc
Confidence            4689999998887542211  111112223799999864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=91.53  E-value=0.085  Score=30.81  Aligned_cols=48  Identities=10%  Similarity=0.068  Sum_probs=29.2

Q ss_pred             CCceecc--cccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCC
Q psy64            57 IRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSL  107 (115)
Q Consensus        57 ~~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~  107 (115)
                      .....|+  .|+..+. ...+..|.. .-...+..|+.|+..+ .+..|..|+
T Consensus        80 ~l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~  129 (170)
T 3hcs_A           80 SLMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHI  129 (170)
T ss_dssp             TSEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHH
T ss_pred             hcccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHh
Confidence            3455674  4665544 345667753 3345677888888877 455566665

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=91.24  E-value=0.042  Score=29.67  Aligned_cols=31  Identities=19%  Similarity=0.178  Sum_probs=22.2

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecceeh
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIV   98 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   98 (115)
                      ..|++|..||..|.           -.-.+|-+|+.|.....
T Consensus        65 v~p~~C~~CG~~F~-----------~~~~kPsrCP~CkSe~I   95 (105)
T 2gmg_A           65 IKPAQCRKCGFVFK-----------AEINIPSRCPKCKSEWI   95 (105)
T ss_dssp             ECCCBBTTTCCBCC-----------CCSSCCSSCSSSCCCCB
T ss_pred             EECcChhhCcCeec-----------ccCCCCCCCcCCCCCcc
Confidence            46899999999981           22346778888876543

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=90.42  E-value=0.057  Score=31.85  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      ..|.|+.||..+.             ++-|-.|++|+.
T Consensus       137 ~~~~C~~CG~i~~-------------~~~p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAV-------------DEAPEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEE-------------SCCCSBCTTTCC
T ss_pred             CeeEeCCCCCeeC-------------CCCCCCCCCCCC
Confidence            4689999998775             256779999995

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=89.90  E-value=0.33  Score=20.84  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHh
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ...+.|..|+-+|.....+..|++..
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             cCcCeeccccceehhhHHHhhhheec
Confidence            45688999999999999999998754

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=89.09  E-value=0.082  Score=29.04  Aligned_cols=33  Identities=12%  Similarity=0.085  Sum_probs=23.3

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVI  100 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~  100 (115)
                      ..|.|+.||+.-.....          ...|.|..|+++|..-
T Consensus        59 akytCPfCGk~~vKR~a----------vGIW~C~~Cgk~fAGG   91 (116)
T 3cc2_Z           59 EDHACPNCGEDRVDRQG----------TGIWQCSYCDYKFTGG   91 (116)
T ss_dssp             SCEECSSSCCEEEEEEE----------TTEEEETTTCCEEECC
T ss_pred             cCCcCCCCCCceeEecC----------ceeEECCCCCCEEECC
Confidence            46899999973222211          2589999999998753

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=88.76  E-value=0.093  Score=27.19  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=24.1

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhh
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVI  100 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~  100 (115)
                      ...|.|+.||.......          +...|.|+.|++.|..-
T Consensus        25 ~~~y~Cp~CG~~~v~r~----------atGiW~C~~Cg~~~agg   58 (83)
T 1vq8_Z           25 NEDHACPNCGEDRVDRQ----------GTGIWQCSYCDYKFTGG   58 (83)
T ss_dssp             HSCEECSSSCCEEEEEE----------ETTEEEETTTCCEEECC
T ss_pred             cccCcCCCCCCcceecc----------CCCeEECCCCCCEecCC
Confidence            35799999997443332          23479999999988653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=88.60  E-value=0.36  Score=25.14  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCcee
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI   89 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~   89 (115)
                      .....|.+||+.|..   |..|+.++.|..|..
T Consensus        19 ~d~iiClecGK~fK~---LkRHL~~~hgltpee   48 (87)
T 2jsp_A           19 DDHIVCLECGGSFKS---LKRHLTTHHSMTPEE   48 (87)
T ss_dssp             SSCEECTBTCCEESB---HHHHHHHTTCSCHHH
T ss_pred             CCceEecccchhhHH---HHHHHHHccCCCHHH
Confidence            445689999998884   679999977776643

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=88.46  E-value=0.29  Score=23.01  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=19.2

Q ss_pred             eecCCChhhccChhhHHHHHH
Q psy64            18 FVCNMCPSTFKLKKHLRQHYK   38 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~   38 (115)
                      -.|..|+..|.....++.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            589999999999999999974

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=87.81  E-value=0.25  Score=22.55  Aligned_cols=15  Identities=27%  Similarity=0.594  Sum_probs=10.9

Q ss_pred             CeecCCChhhccChh
Q psy64            17 PFVCNMCPSTFKLKK   31 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~   31 (115)
                      .|.|.-||..|....
T Consensus         3 iY~C~rCg~~fs~~e   17 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQ   17 (48)
T ss_dssp             --CCCCTTTTCCCCC
T ss_pred             EEEeeccCCCccHHH
Confidence            588999999998653

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=87.67  E-value=0.16  Score=25.48  Aligned_cols=32  Identities=13%  Similarity=0.313  Sum_probs=23.5

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   99 (115)
                      ..|.|+.||+.-...          .....|.|..|+++|..
T Consensus        25 ~ky~C~fCgk~~vkR----------~a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           25 ARYDCSFCGKKTVKR----------GAAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             SCBCCSSCCSSCBSB----------CSSSCBCCSSSCCCCCC
T ss_pred             cCccCCCCCCceeEe----------cCCCeEECCCCCCEEeC
Confidence            468999999763222          33568999999998864

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=87.16  E-value=0.15  Score=28.11  Aligned_cols=27  Identities=19%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCce-eEEeecce
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY-IFIVVKKI   96 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~-~C~~C~~~   96 (115)
                      ..|.|..||..|...            +.++ .|+.|+..
T Consensus        72 ~~~~C~~CG~~~e~~------------~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           72 VELECKDCSHVFKPN------------ALDYGVCEKCHSK   99 (119)
T ss_dssp             CEEECSSSSCEECSC------------CSTTCCCSSSSSC
T ss_pred             ceEEcCCCCCEEeCC------------CCCCCcCccccCC
Confidence            358999999988762            4567 89999865

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=85.39  E-value=0.097  Score=31.42  Aligned_cols=26  Identities=8%  Similarity=0.209  Sum_probs=19.5

Q ss_pred             ceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      .|.|+.||..+...            +.|-.|++|+..
T Consensus       155 ~~~C~~CG~~~~g~------------~~p~~CP~C~~~  180 (191)
T 1lko_A          155 KWRCRNCGYVHEGT------------GAPELCPACAHP  180 (191)
T ss_dssp             EEEETTTCCEEEEE------------ECCSBCTTTCCB
T ss_pred             eEEECCCCCEeeCC------------CCCCCCCCCcCC
Confidence            68999999887621            455599999874

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=85.25  E-value=0.17  Score=26.13  Aligned_cols=32  Identities=13%  Similarity=0.194  Sum_probs=23.4

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   99 (115)
                      ..|.|+.||+.-...          .....|.|..|+++|..
T Consensus        34 ~ky~CpfCGk~~vkR----------~a~GIW~C~kCg~~~AG   65 (83)
T 3j21_i           34 QKHTCPVCGRKAVKR----------ISTGIWQCQKCGATFAG   65 (83)
T ss_dssp             SCBCCSSSCSSCEEE----------EETTEEEETTTCCEEEC
T ss_pred             cccCCCCCCCceeEe----------cCcCeEEcCCCCCEEeC
Confidence            468999999763222          33568999999999864

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=83.73  E-value=0.23  Score=26.69  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=23.6

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   99 (115)
                      ..|.|+.||+.-...          .....|.|..|+++|..
T Consensus        35 aky~CpfCgk~~vKR----------~a~GIW~C~kCg~~~AG   66 (103)
T 4a17_Y           35 AKYGCPFCGKVAVKR----------AAVGIWKCKPCKKIIAG   66 (103)
T ss_dssp             SCEECTTTCCEEEEE----------EETTEEEETTTTEEEEC
T ss_pred             cCCCCCCCCCceeee----------cCcceEEcCCCCCEEeC
Confidence            568999999763222          23568999999998865

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=83.56  E-value=0.76  Score=27.92  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=22.2

Q ss_pred             CCCeecCCChhhccC-hhhHHHHHHHh
Q psy64            15 DRPFVCNMCPSTFKL-KKHLRQHYKVH   40 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~-~~~l~~h~~~h   40 (115)
                      ..|.+|..|+..|.+ ...|+.|...+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            358899999999987 89999998755

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=81.32  E-value=0.38  Score=24.01  Aligned_cols=28  Identities=7%  Similarity=0.084  Sum_probs=20.4

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecc
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKK   95 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~   95 (115)
                      .-.|.|..||..|...          .++ +..|..||.
T Consensus        26 ~v~Y~C~~CG~~~e~~----------~~d-~irCp~CG~   53 (70)
T 1twf_L           26 TLKYICAECSSKLSLS----------RTD-AVRCKDCGH   53 (70)
T ss_dssp             CCCEECSSSCCEECCC----------TTS-TTCCSSSCC
T ss_pred             eEEEECCCCCCcceeC----------CCC-CccCCCCCc
Confidence            4568999999887764          223 347999998

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=80.82  E-value=1.5  Score=17.68  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=15.9

Q ss_pred             eecccccccccChhhHHHHHH
Q psy64            60 FQCKVCDRAFFDVYNLKLHMR   80 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~   80 (115)
                      +.|+.|.........++.|..
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            678888877777777777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	6e-07
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	5e-05
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	5e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	7e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.004
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	9e-06
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	9e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	2e-05
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	2e-05
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	3e-05
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	6e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	8e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	2e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	5e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	0.002
d2epra1	35	g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [	0.002
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	0.003
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.003
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.004

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 40.7 bits (96), Expect = 6e-07
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
          R F C+VC RAF    +LK H R HT EK
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (94), Expect = 1e-06
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          +H   + + C  C +AF     L  H R+HTGE
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (83), Expect = 5e-05
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +H+ ++P+ C  C   F     L QH +VH
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 5e-06
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEK 86
          F C  C + F    +L  H++ H  +K
Sbjct: 3  FACPECPKRFMRSDHLSKHIKTHQNKK 29

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 7e-06
 Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 60 FQCKVCDRAFFDVYNLKLHMR-IHTGEKKY 88
          + C+ C + F    +L  H++ +HT E+ +
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPH 35

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.7 bits (70), Expect = 0.004
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 13/52 (25%)

Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          +  +P++C  C   F    HL               H+K VH   R  +C+V
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNG-------------HIKQVHTSERPHKCQV 39

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (88), Expect = 9e-06
 Identities = 8/42 (19%), Positives = 23/42 (54%)

Query: 45 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
          +++ ++K + +K  +     C + F   YN++ H++ H  ++
Sbjct: 6  SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (88), Expect = 9e-06
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
               T  +PF C  C  +F    HL  H K H+ +
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 2e-05
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 60 FQCK--VCDRAFFDVYNLKLHMRIHTGEKKY 88
          F C    C ++F    +LK HM++H+  + Y
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 32

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (85), Expect = 2e-05
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTG 84
          FQC++C R F    +L  H+R HTG
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTG 28

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 3e-05
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
                  R + C+ C  +F     L +H + H
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 6e-05
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 49 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
                 + R ++C  C ++F    +L  H R HTGE
Sbjct: 3  SEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 6e-05
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
           H   + + C  CD+ F     L +H + +    
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
           HT ++P+ C+ C  TF+ K+ L  H+K +
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRY 31

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 8e-05
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEK 86
          R F C    C + F     L+ H R HTGEK
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGE 85
          +  +C    C +++  + NLK H+R HTGE
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 2e-04
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R F C++C  AF    N   H+++HT  
Sbjct: 6  RPFVCRICLSAFTTKANCARHLKVHTDT 33

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.6 bits (72), Expect = 0.001
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
           +  RPFVC +C S F  K +  +H KVH
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKVH 30

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 5e-04
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 15/68 (22%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYN 74
          D+ + C  C  +F  K    +H  +HL +              R + C VC + F   ++
Sbjct: 1  DKLYPCQ-CGKSFTHKSQRDRHMSMHLGL--------------RPYGCGVCGKKFKMKHH 45

Query: 75 LKLHMRIH 82
          L  HM+IH
Sbjct: 46 LVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (72), Expect = 0.002
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          K Q   HM++H   RP+ C +C   FK+K HL  H K+H
Sbjct: 15 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (71), Expect = 0.002
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGE 85
          + FQC    C + F   +NL+ H+RIHTG+
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (70), Expect = 0.002
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
          +   C++C + F DVY+L  H   H+GEK Y
Sbjct: 4  KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.1 bits (71), Expect = 0.003
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTG 84
          R + C V  CDR F    +L  H+RIHTG
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (71), Expect = 0.003
 Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 53 VHEKIRDFQCKVCDRAFFDVYNLKLH-MRIHTGE 85
           H   + ++C +C   F     +K+H ++ HT  
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.7 bits (70), Expect = 0.004
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
           H+ ++P+ C +C + F     ++ H    
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQK 31

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 30.8 bits (70), Expect = 0.004
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGE 85
          R + C    CD+AF   ++L  H + H  +
Sbjct: 2  RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.82
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.74
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.45
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.45
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.41
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.4
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.38
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.35
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.34
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.34
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.31
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.3
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.29
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.28
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.27
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.26
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.19
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.17
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.16
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.16
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.15
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.05
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.04
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.01
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.98
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.98
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.98
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.97
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.87
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.85
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.7
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.68
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.67
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.66
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.65
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.6
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.6
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.49
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.46
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.42
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.4
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.3
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.18
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.11
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.1
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.04
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.01
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.95
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.85
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.79
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.73
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.71
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.7
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.68
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.62
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.62
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.49
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.49
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.42
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.41
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.41
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.36
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.34
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.32
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.28
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.25
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.23
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.2
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.2
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.14
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.13
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.12
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.12
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.05
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.04
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.95
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.83
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.81
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.81
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.72
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.61
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.48
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.26
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.68
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.67
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.43
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	95.23
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.73
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	94.7
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.51
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.11
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.03
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.88
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.73
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.73
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	93.69
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.3
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.19
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.14
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.91
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.34
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	89.32
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	89.16
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	87.44
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	86.91
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	85.31
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	83.51
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	82.94
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	82.5
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	81.55
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	81.43

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-21  Score=93.95  Aligned_cols=53  Identities=21%  Similarity=0.269  Sum_probs=51.1

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecceehhhhhhccCCccc
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIE  110 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h  110 (115)
                      +|||+| +||+.|.....|..|+++|+|++||.|+.|++.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            589999 59999999999999999999999999999999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-18  Score=83.54  Aligned_cols=53  Identities=32%  Similarity=0.679  Sum_probs=49.2

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccccChhhHHHHHHHh
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      |+||.|+ ||++|.....|..|+++              |++++||.|.+||+.|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~--------------Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSM--------------HLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHH--------------HSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhc--------------cccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            6899995 99999999999999884              58999999999999999999999999876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-15  Score=67.31  Aligned_cols=37  Identities=24%  Similarity=0.469  Sum_probs=34.0

Q ss_pred             CCCceecccccccccChhhHHHHHH-HhcCCCceeEEe
Q psy64            56 KIRDFQCKVCDRAFFDVYNLKLHMR-IHTGEKKYIFIV   92 (115)
Q Consensus        56 ~~~~~~C~~c~~~~~~~~~l~~h~~-~h~~~~~~~C~~   92 (115)
                      .++||+|.+||+.|...+.|..|++ +|++|+||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999999999999999999976 799999999964

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.5e-14  Score=61.04  Aligned_cols=32  Identities=38%  Similarity=0.662  Sum_probs=26.5

Q ss_pred             hcCCCceecccccccccChhhHHHHHHHhcCC
Q psy64            54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        54 h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      |++++||+|.+||+.|...+.|..|+++|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            67888888888888888888888888888875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=6.1e-16  Score=68.23  Aligned_cols=33  Identities=15%  Similarity=0.023  Sum_probs=18.1

Q ss_pred             HHhcCCCceeEEeecceehhhhhhccCCccccc
Q psy64            80 RIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        80 ~~h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~  112 (115)
                      ++|+||+||.|+.|++.|..+..|..|+++|+.
T Consensus         4 R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            445555555555555555555555555555543

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-14  Score=63.88  Aligned_cols=33  Identities=33%  Similarity=0.691  Sum_probs=27.4

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      .|++++||+|++||+.|...+.|..|+++|+||
T Consensus         6 ~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           6 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            677888888888888888888888888888876

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.3e-14  Score=62.71  Aligned_cols=30  Identities=33%  Similarity=0.637  Sum_probs=16.7

Q ss_pred             cCCCceecccccccccChhhHHHHHHHhcC
Q psy64            55 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        55 ~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      +|++||+|.+|++.|...+.|..|+++|++
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccCC
Confidence            455555555555555555555555555544

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=61.10  Aligned_cols=38  Identities=34%  Similarity=0.771  Sum_probs=33.2

Q ss_pred             CCCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceeccc
Q psy64            14 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV   64 (115)
Q Consensus        14 ~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~   64 (115)
                      .++||.|++||++|....+|..|++.             .|++++||+|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~-------------~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQ-------------VHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH-------------TSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcC-------------ccCCCcCcCCcC
Confidence            57999999999999999999999752             468999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=4.3e-14  Score=62.18  Aligned_cols=34  Identities=32%  Similarity=0.547  Sum_probs=31.4

Q ss_pred             HHHhcCCCCCeecCCChhhccChhhHHHHHHHhc
Q psy64             8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus         8 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      |.++|+|++||.|++|+++|...++|..|++.|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5688999999999999999999999999998773

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.9e-13  Score=59.05  Aligned_cols=32  Identities=34%  Similarity=0.743  Sum_probs=29.9

Q ss_pred             HhcCCCCCeecCCChhhccChhhHHHHHHHhc
Q psy64            10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      ++|+|++||.|++||++|...+.|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            57999999999999999999999999999774

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.2e-13  Score=57.15  Aligned_cols=31  Identities=32%  Similarity=0.698  Sum_probs=28.9

Q ss_pred             hcCCCCCeecCCChhhccChhhHHHHHHHhc
Q psy64            11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        11 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      +|++++||.|++||++|...+.|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            5899999999999999999999999999773

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.5e-14  Score=62.50  Aligned_cols=35  Identities=20%  Similarity=0.447  Sum_probs=32.2

Q ss_pred             HHHHhcCCCCCeecCCChhhccChhhHHHHHHHhc
Q psy64             7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus         7 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      +|+.+|++++||.|++||++|...++|..|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            47789999999999999999999999999999763

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.4e-13  Score=57.72  Aligned_cols=33  Identities=21%  Similarity=0.493  Sum_probs=25.3

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhcCC
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      +|+|++||+|.+||+.|...+.|..|+++|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            467778888888888888888888887777754

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=7.3e-13  Score=57.12  Aligned_cols=33  Identities=6%  Similarity=0.113  Sum_probs=31.0

Q ss_pred             hcCCCceeEEeecceehhhhhhccCCccccccc
Q psy64            82 HTGEKKYIFIVVKKIIVVIYAKKFSLDIEILCV  114 (115)
Q Consensus        82 h~~~~~~~C~~C~~~~~~~~~~~~h~~~h~~~~  114 (115)
                      |+||+||.|.+|++.|..+..|..|+++|....
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            689999999999999999999999999998764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.29  E-value=7.2e-13  Score=54.88  Aligned_cols=29  Identities=55%  Similarity=0.875  Sum_probs=27.2

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +||+|++||+.|...+.|..|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-12  Score=54.26  Aligned_cols=29  Identities=28%  Similarity=0.701  Sum_probs=27.1

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      |||.|++||+.|...+.|..|+++|+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-12  Score=56.89  Aligned_cols=31  Identities=19%  Similarity=0.612  Sum_probs=28.1

Q ss_pred             HhcCCCCCeecCCChhhccChhhHHHHHHHh
Q psy64            10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        10 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ++|+|++||.|++|+++|....+|..|++.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            4799999999999999999999999997643

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.5e-12  Score=53.27  Aligned_cols=28  Identities=43%  Similarity=0.854  Sum_probs=22.8

Q ss_pred             CCceecccccccccChhhHHHHHHHhcC
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      +|||+|++|++.|...+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4788888888888888888888888875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.7e-12  Score=55.28  Aligned_cols=32  Identities=34%  Similarity=0.704  Sum_probs=30.1

Q ss_pred             eeccc--ccccccChhhHHHHHHHhcCCCceeEE
Q psy64            60 FQCKV--CDRAFFDVYNLKLHMRIHTGEKKYIFI   91 (115)
Q Consensus        60 ~~C~~--c~~~~~~~~~l~~h~~~h~~~~~~~C~   91 (115)
                      |.|+.  ||+.|.....|..|+++|+||+||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            67876  999999999999999999999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.5e-12  Score=50.19  Aligned_cols=26  Identities=38%  Similarity=0.709  Sum_probs=20.3

Q ss_pred             CceecccccccccChhhHHHHHHHhc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      |||+|.+||++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            57888888888888888888887774

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=8.5e-12  Score=51.00  Aligned_cols=27  Identities=33%  Similarity=0.844  Sum_probs=25.2

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhc
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      |+||.|++|+++|...++|..|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999773

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.2e-12  Score=49.74  Aligned_cols=25  Identities=28%  Similarity=0.723  Sum_probs=24.0

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||+|++||++|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            6999999999999999999999987

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-11  Score=53.68  Aligned_cols=31  Identities=19%  Similarity=0.529  Sum_probs=23.0

Q ss_pred             hhcCCCceecccccccccChhhHHHHHHHhc
Q psy64            53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        53 ~h~~~~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      +|+|++||+|+.|++.|...+.|..|+..+.
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            4677888888888888888888888865543

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.05  E-value=6.7e-11  Score=48.78  Aligned_cols=25  Identities=44%  Similarity=1.123  Sum_probs=23.5

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|++|+++|...+.|..|+++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~H   25 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCcc
Confidence            6999999999999999999999966

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=4.2e-11  Score=55.00  Aligned_cols=33  Identities=24%  Similarity=0.655  Sum_probs=29.6

Q ss_pred             hcCCCceeccc--ccccccChhhHHHHHHHhcCCC
Q psy64            54 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        54 h~~~~~~~C~~--c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      |.+++||+|+.  |++.|...+.|..|+++|+||+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            78899999976  9999999999999999999885

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1e-10  Score=48.47  Aligned_cols=28  Identities=39%  Similarity=0.848  Sum_probs=25.2

Q ss_pred             Cceeccc--ccccccChhhHHHHHHHhcCC
Q psy64            58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        58 ~~~~C~~--c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      +||.|+.  ||+.|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899988  999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.7e-10  Score=47.45  Aligned_cols=25  Identities=40%  Similarity=0.887  Sum_probs=23.6

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|++||++|...+.|..|+++|
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~H   25 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTH   25 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCcc
Confidence            6999999999999999999999976

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=1.2e-11  Score=56.85  Aligned_cols=37  Identities=27%  Similarity=0.617  Sum_probs=31.8

Q ss_pred             HHHHHHHHhcCCCCCeecCC--ChhhccChhhHHHHHHHh
Q psy64             3 RQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus         3 ~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h   40 (115)
                      +.+..|+ .|++++||.|.+  |+++|...++|..|+++|
T Consensus         5 ~~l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~H   43 (47)
T d1ncsa_           5 GSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             SSGGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             chhcchh-hccCCCCeECCcCCCCccccCchHHHhhcccc
Confidence            3455666 499999999987  999999999999999976

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.6e-10  Score=47.95  Aligned_cols=28  Identities=46%  Similarity=0.985  Sum_probs=24.5

Q ss_pred             Cceeccc--ccccccChhhHHHHHHHhcCC
Q psy64            58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        58 ~~~~C~~--c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      +||.|+.  ||+.|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5889976  999999999999999999886

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.7e-10  Score=48.24  Aligned_cols=29  Identities=45%  Similarity=0.801  Sum_probs=25.6

Q ss_pred             Cceecc--cccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCK--VCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~--~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +||.|+  .||+.|...+.|..|+++|+||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589995  59999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.1e-10  Score=48.09  Aligned_cols=32  Identities=44%  Similarity=1.029  Sum_probs=28.6

Q ss_pred             eecCC--ChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecc
Q psy64            18 FVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK   63 (115)
Q Consensus        18 ~~C~~--C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~   63 (115)
                      |.|+.  |+++|.....|.+|+++              |+|++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~--------------Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL--------------HSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH--------------HHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe--------------eCCCCCEeCC
Confidence            77876  99999999999999985              4899999996

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=9e-11  Score=46.20  Aligned_cols=27  Identities=15%  Similarity=0.149  Sum_probs=18.6

Q ss_pred             CCceeEEeecceehhhhhhccCCcccc
Q psy64            85 EKKYIFIVVKKIIVVIYAKKFSLDIEI  111 (115)
Q Consensus        85 ~~~~~C~~C~~~~~~~~~~~~h~~~h~  111 (115)
                      |+||.|++||+.|..+....+|.++|+
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            466777777777777777777766665

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.2e-09  Score=43.94  Aligned_cols=27  Identities=52%  Similarity=0.994  Sum_probs=18.6

Q ss_pred             Cceeccc--ccccccChhhHHHHHHHhcC
Q psy64            58 RDFQCKV--CDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        58 ~~~~C~~--c~~~~~~~~~l~~h~~~h~~   84 (115)
                      +||.|+.  ||+.|.....|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4677755  77777777777777777664

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.9e-09  Score=43.24  Aligned_cols=26  Identities=23%  Similarity=0.727  Sum_probs=23.9

Q ss_pred             CCeecCC--ChhhccChhhHHHHHHHhc
Q psy64            16 RPFVCNM--CPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        16 ~~~~C~~--C~~~~~~~~~l~~h~~~h~   41 (115)
                      +||.|+.  |+++|...+.|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            6999999  9999999999999999773

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.6e-09  Score=43.11  Aligned_cols=26  Identities=38%  Similarity=0.933  Sum_probs=23.7

Q ss_pred             CCeecCC--ChhhccChhhHHHHHHHhc
Q psy64            16 RPFVCNM--CPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        16 ~~~~C~~--C~~~~~~~~~l~~h~~~h~   41 (115)
                      +||.|++  |+++|...+.|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            6999988  9999999999999999773

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=5.8e-09  Score=43.64  Aligned_cols=27  Identities=37%  Similarity=0.784  Sum_probs=25.0

Q ss_pred             CCCeecCC--ChhhccChhhHHHHHHHhc
Q psy64            15 DRPFVCNM--CPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        15 ~~~~~C~~--C~~~~~~~~~l~~h~~~h~   41 (115)
                      |+||.|+.  |+++|...++|..|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            68999998  9999999999999999874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=7.1e-10  Score=45.46  Aligned_cols=27  Identities=11%  Similarity=0.004  Sum_probs=24.6

Q ss_pred             CceeEEe--ecceehhhhhhccCCccccc
Q psy64            86 KKYIFIV--VKKIIVVIYAKKFSLDIEIL  112 (115)
Q Consensus        86 ~~~~C~~--C~~~~~~~~~~~~h~~~h~~  112 (115)
                      |||.|+.  |++.|..+..|.+|+++|.+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999977  99999999999999998864

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.1e-08  Score=42.76  Aligned_cols=28  Identities=32%  Similarity=0.617  Sum_probs=18.6

Q ss_pred             CCceeccc--ccccccChhhHHHHHHHhcC
Q psy64            57 IRDFQCKV--CDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        57 ~~~~~C~~--c~~~~~~~~~l~~h~~~h~~   84 (115)
                      ++||.|+.  ||+.|.....|..|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            35667765  77777777777777766653

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.2e-08  Score=41.58  Aligned_cols=32  Identities=41%  Similarity=0.866  Sum_probs=29.0

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCcee
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYI   89 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~   89 (115)
                      +...|.+||+.|.....|.+|.-.|++|+||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            44689999999999999999999999999983

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.3e-09  Score=41.74  Aligned_cols=26  Identities=35%  Similarity=0.834  Sum_probs=23.9

Q ss_pred             CCeecCC--ChhhccChhhHHHHHHHhc
Q psy64            16 RPFVCNM--CPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        16 ~~~~C~~--C~~~~~~~~~l~~h~~~h~   41 (115)
                      +||.|+.  ||++|...++|..|++.|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999998  9999999999999999873

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.4e-09  Score=41.73  Aligned_cols=26  Identities=35%  Similarity=0.750  Sum_probs=18.2

Q ss_pred             Cceeccc--ccccccChhhHHHHHHHhc
Q psy64            58 RDFQCKV--CDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        58 ~~~~C~~--c~~~~~~~~~l~~h~~~h~   83 (115)
                      +||.|+.  ||+.|...+.|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4677766  7777777777777777664

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.3e-08  Score=41.02  Aligned_cols=25  Identities=36%  Similarity=0.906  Sum_probs=22.5

Q ss_pred             CCeecC--CChhhccChhhHHHHHHHh
Q psy64            16 RPFVCN--MCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~--~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|+  .|+++|...++|..|+++|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~H   27 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTH   27 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcc
Confidence            689996  5999999999999999866

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.4e-08  Score=37.19  Aligned_cols=26  Identities=46%  Similarity=0.855  Sum_probs=22.1

Q ss_pred             ceecccccccccChhhHHHHHHHhcC
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTG   84 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~   84 (115)
                      |.+|+.|++.|++...|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56788999999999999999888875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=8.4e-08  Score=38.12  Aligned_cols=29  Identities=28%  Similarity=0.611  Sum_probs=24.4

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCC
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      ++||.|+.|+..|.....+.-|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            47889999999999998888888888763

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=9.6e-08  Score=37.39  Aligned_cols=27  Identities=33%  Similarity=0.669  Sum_probs=24.7

Q ss_pred             CCceecccccccccChhhHHHHHHHhc
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      ++||.|..||+.|..+....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999988874

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1e-07  Score=37.08  Aligned_cols=29  Identities=38%  Similarity=0.767  Sum_probs=23.7

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCC
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      ++||+|..|......++.|..|.+.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            46888888888888888888888888774

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.1e-07  Score=36.95  Aligned_cols=26  Identities=31%  Similarity=0.804  Sum_probs=24.1

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHh
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ++||.|++|...|+.+..+.-|.+.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            68999999999999999999999866

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-07  Score=36.09  Aligned_cols=24  Identities=33%  Similarity=0.829  Sum_probs=21.8

Q ss_pred             CeecCCChhhccChhhHHHHHHHh
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      |++|+.|++.|..+..|..|++.|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CCccchhhhHhcchhHHHHHhhcc
Confidence            678999999999999999998865

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.9e-07  Score=37.93  Aligned_cols=32  Identities=22%  Similarity=0.529  Sum_probs=27.3

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCce
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF   60 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~   60 (115)
                      .+...|+.||+.|+.-..|.+|.-              +|.++|||
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhkl--------------shs~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKL--------------SHSGEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG--------------GSCSCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhc--------------ccCCCCCC
Confidence            356789999999999999999876              56899987

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.1e-07  Score=34.64  Aligned_cols=26  Identities=42%  Similarity=0.790  Sum_probs=21.7

Q ss_pred             eecccccccccChhhHHHHHHHhcCC
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      ..|.+||++|..++.|++|+-.|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46888888888888888888888875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8e-07  Score=34.47  Aligned_cols=26  Identities=35%  Similarity=0.860  Sum_probs=23.7

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHh
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ++||+|..|.++.+..+.|..|.+.|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~h   26 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSH   26 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTC
T ss_pred             CCcceeeecccccCCchheEEeeecc
Confidence            58999999999999999999998865

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.5e-06  Score=33.87  Aligned_cols=27  Identities=30%  Similarity=0.479  Sum_probs=24.9

Q ss_pred             eecccccccccChhhHHHHHHHhcCCC
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      |.|+.||.....++-|+.|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999999874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=2e-06  Score=32.66  Aligned_cols=26  Identities=50%  Similarity=1.003  Sum_probs=24.5

Q ss_pred             ecccccccccChhhHHHHHHHhcCCC
Q psy64            61 QCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        61 ~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +|+.|.+.|.+...|..|-+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999985

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.1e-07  Score=38.95  Aligned_cols=24  Identities=17%  Similarity=0.045  Sum_probs=17.1

Q ss_pred             CCCceeEEeecceehhhhhhccCC
Q psy64            84 GEKKYIFIVVKKIIVVIYAKKFSL  107 (115)
Q Consensus        84 ~~~~~~C~~C~~~~~~~~~~~~h~  107 (115)
                      |-|||.|++|+|.|.-+.++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            557777777777777777776664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.4e-06  Score=32.07  Aligned_cols=26  Identities=42%  Similarity=0.844  Sum_probs=17.9

Q ss_pred             CceecccccccccChhhHHHHHHHhc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      +||+|..|..+-..++.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            56777777777777777777776664

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=6.1e-06  Score=35.23  Aligned_cols=26  Identities=27%  Similarity=0.738  Sum_probs=23.5

Q ss_pred             CCCCCeecCCChhhccChhhHHHHHH
Q psy64            13 TTDRPFVCNMCPSTFKLKKHLRQHYK   38 (115)
Q Consensus        13 ~~~~~~~C~~C~~~~~~~~~l~~h~~   38 (115)
                      +|.+||.|..|++.|-+..+..+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            47899999999999999999998874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.79  E-value=9.6e-06  Score=31.43  Aligned_cols=25  Identities=32%  Similarity=0.650  Sum_probs=18.4

Q ss_pred             Cceeccc--ccccccChhhHHHHHHHh
Q psy64            58 RDFQCKV--CDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        58 ~~~~C~~--c~~~~~~~~~l~~h~~~h   82 (115)
                      .||+|+.  |++.|...+.|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4677766  777787777777777665

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.5e-06  Score=31.49  Aligned_cols=24  Identities=33%  Similarity=0.617  Sum_probs=21.3

Q ss_pred             CeecCCChhhccChhhHHHHHHHh
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      .+.|.+||++|...+.|.+|.-.|
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvh   25 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVH   25 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGT
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcc
Confidence            468999999999999999998765

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.6e-05  Score=31.37  Aligned_cols=25  Identities=32%  Similarity=0.829  Sum_probs=22.5

Q ss_pred             CCeecCC--ChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNM--CPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~--C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|.+  |+++|..+++|+.|++.+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            6899998  999999999999999864

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.8e-05  Score=31.23  Aligned_cols=24  Identities=25%  Similarity=0.696  Sum_probs=12.8

Q ss_pred             ceeccc--ccccccChhhHHHHHHHh
Q psy64            59 DFQCKV--CDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        59 ~~~C~~--c~~~~~~~~~l~~h~~~h   82 (115)
                      ||.|..  |++.+...++|..|++++
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhh
Confidence            455544  555555555555555543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.9e-05  Score=30.26  Aligned_cols=25  Identities=24%  Similarity=0.691  Sum_probs=23.4

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +|++|..|.++-...++|..|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            7999999999999999999999876

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.62  E-value=2.2e-05  Score=33.18  Aligned_cols=27  Identities=30%  Similarity=0.714  Sum_probs=24.3

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHhc
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      .+.|.|.+|++.|.+...|-.|+..|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            467999999999999999999998773

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.62  E-value=3.2e-05  Score=29.93  Aligned_cols=25  Identities=40%  Similarity=0.851  Sum_probs=22.4

Q ss_pred             CCeecCC--ChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNM--CPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~--C~~~~~~~~~l~~h~~~h   40 (115)
                      -||.|+.  |++.|..++.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4899987  999999999999998865

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=4.7e-05  Score=29.65  Aligned_cols=26  Identities=31%  Similarity=0.643  Sum_probs=22.2

Q ss_pred             CceecccccccccChhhHHHHHHHhc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      +||+|..|......+++|..|+.+-.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            58999999999999999999987743

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=5e-05  Score=31.87  Aligned_cols=27  Identities=37%  Similarity=0.833  Sum_probs=23.9

Q ss_pred             CCCCeecCC--ChhhccChhhHHHHHHHh
Q psy64            14 TDRPFVCNM--CPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        14 ~~~~~~C~~--C~~~~~~~~~l~~h~~~h   40 (115)
                      .++||.|..  |+..|.+...|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            379999955  999999999999998866

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.5e-05  Score=31.07  Aligned_cols=27  Identities=26%  Similarity=0.655  Sum_probs=17.5

Q ss_pred             Cceeccc--ccccccChhhHHHHH-HHhcC
Q psy64            58 RDFQCKV--CDRAFFDVYNLKLHM-RIHTG   84 (115)
Q Consensus        58 ~~~~C~~--c~~~~~~~~~l~~h~-~~h~~   84 (115)
                      +||.|..  |.++|...+.-..|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4666655  777777777666665 55553

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.42  E-value=7.6e-05  Score=31.48  Aligned_cols=29  Identities=31%  Similarity=0.730  Sum_probs=23.5

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      +.|+|..|++.|.+...|--|+..|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            56888888888888888888888886554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=5.9e-06  Score=34.78  Aligned_cols=28  Identities=25%  Similarity=0.502  Sum_probs=18.6

Q ss_pred             CCCceec--ccccccccChhhHHHHHHHhc
Q psy64            56 KIRDFQC--KVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        56 ~~~~~~C--~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      .++||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3677777  447777777777777766553

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.41  E-value=3e-05  Score=28.88  Aligned_cols=23  Identities=35%  Similarity=0.827  Sum_probs=21.0

Q ss_pred             eecCCChhhccChhhHHHHHHHh
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      |+|..|.++|-.++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            68999999999999999998876

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=7e-06  Score=31.91  Aligned_cols=23  Identities=4%  Similarity=-0.184  Sum_probs=14.3

Q ss_pred             ceeEEeecceehhhhhhccCCcc
Q psy64            87 KYIFIVVKKIIVVIYAKKFSLDI  109 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~~~~h~~~  109 (115)
                      ||.|..|...|..++.|..|+++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            56666666666666666666554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.34  E-value=5.1e-05  Score=30.15  Aligned_cols=23  Identities=26%  Similarity=0.717  Sum_probs=20.8

Q ss_pred             CeecCCChhhccChhhHHHHHHH
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKV   39 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~   39 (115)
                      ||.|.+|++.|.....|.+|+..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            79999999999999999999753

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.32  E-value=0.0001  Score=28.57  Aligned_cols=28  Identities=39%  Similarity=0.803  Sum_probs=20.8

Q ss_pred             Cceeccc--ccccccChhhHHHHHHHhcCC
Q psy64            58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        58 ~~~~C~~--c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      +||.|..  |.+.|..--.|.+|.-+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4677765  778888877788887777764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=7.5e-05  Score=28.44  Aligned_cols=22  Identities=32%  Similarity=0.652  Sum_probs=19.9

Q ss_pred             CeecCCChhhccChhhHHHHHH
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYK   38 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~   38 (115)
                      ||+|..||+.|..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999998854

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.0002  Score=27.64  Aligned_cols=28  Identities=46%  Similarity=0.858  Sum_probs=23.9

Q ss_pred             CceecccccccccChhhHHHHHHHhcCC
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      ..|.|..|...|...-.|..|+-.|+||
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4588999999999999999998888875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00016  Score=27.23  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.8

Q ss_pred             ecCCChhhccChhhHHHHHHHh
Q psy64            19 VCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        19 ~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +|+.|.++|.++..|..|-+.|
T Consensus         2 qcp~c~k~f~skyylkvhnr~h   23 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKH   23 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccccc
Confidence            6999999999999999998755

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.20  E-value=9.6e-05  Score=27.46  Aligned_cols=23  Identities=35%  Similarity=0.947  Sum_probs=16.8

Q ss_pred             eecccccccccChhhHHHHHHHh
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      |+|..|.+.|...+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            56777777777777777777665

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00015  Score=28.17  Aligned_cols=25  Identities=20%  Similarity=0.486  Sum_probs=21.8

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|..|.......++|..|.+.-
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhcc
Confidence            6899999999999999999888753

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=1.8e-05  Score=31.46  Aligned_cols=26  Identities=12%  Similarity=-0.003  Sum_probs=22.0

Q ss_pred             CceeEEe--ecceehhhhhhccCC-cccc
Q psy64            86 KKYIFIV--VKKIIVVIYAKKFSL-DIEI  111 (115)
Q Consensus        86 ~~~~C~~--C~~~~~~~~~~~~h~-~~h~  111 (115)
                      +||.|+.  |.|.|.++++-..|. ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6999977  999999999988885 6664

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.13  E-value=0.00014  Score=28.89  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=19.2

Q ss_pred             ceecccccccccChhhHHHHHHH
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      ||.|..|++.|.+..-+.+|+..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            68899999999999888888654

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=2.1e-05  Score=29.33  Aligned_cols=21  Identities=5%  Similarity=-0.045  Sum_probs=13.2

Q ss_pred             ceeEEeecceehhhhhhccCC
Q psy64            87 KYIFIVVKKIIVVIYAKKFSL  107 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~~~~h~  107 (115)
                      ||.|+.|+.-|..+.+|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            566666666666666665553

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00022  Score=27.65  Aligned_cols=24  Identities=42%  Similarity=0.757  Sum_probs=21.0

Q ss_pred             CCeecCCChhhccChhhHHHHHHH
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKV   39 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~   39 (115)
                      +||+|+.|.--.+..++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            699999999888889999988764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00018  Score=27.36  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=19.4

Q ss_pred             ceecccccccccChhhHHHHHHH
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      ||+|..||+.+....+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999999999999988888543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00027  Score=27.32  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=22.6

Q ss_pred             ceecccccccccChhhHHHHHHHhc
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      ||.|..|...|...++|..|+..-+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            7899999999999999999988654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00034  Score=26.99  Aligned_cols=24  Identities=25%  Similarity=0.617  Sum_probs=21.3

Q ss_pred             eecCCChhhccChhhHHHHHHHhc
Q psy64            18 FVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        18 ~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      |.|++||.....++-|..|.+.|+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             ccccccCcccCCHHHHHHHHHHhc
Confidence            789999999999999999988663

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00043  Score=25.62  Aligned_cols=22  Identities=27%  Similarity=0.742  Sum_probs=20.1

Q ss_pred             ceecccccccccChhhHHHHHH
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMR   80 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~   80 (115)
                      ||+|..|...|.....|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999863

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0007  Score=25.83  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=19.6

Q ss_pred             ceecccccccccChhhHHHHHHHhc
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      |.+|++|.+.......|..|.+.|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4578888888888888888887775

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=7.6e-05  Score=30.34  Aligned_cols=20  Identities=5%  Similarity=-0.071  Sum_probs=13.7

Q ss_pred             ceeEEeecceehhhhhhccC
Q psy64            87 KYIFIVVKKIIVVIYAKKFS  106 (115)
Q Consensus        87 ~~~C~~C~~~~~~~~~~~~h  106 (115)
                      .|+|+.|+++|..+-.+.+|
T Consensus         4 afvcskcgktftrrntm~rh   23 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARH   23 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHH
T ss_pred             eeeecccccchhcchHHHHH
Confidence            46777777777776666555

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00068  Score=27.43  Aligned_cols=27  Identities=22%  Similarity=0.487  Sum_probs=23.9

Q ss_pred             ceecccccccccChhhHHHHHHHhcCC
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      .|.|..||+.|.+...+.+|.....|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            589999999999999999998887663

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00061  Score=25.99  Aligned_cols=25  Identities=32%  Similarity=0.580  Sum_probs=22.2

Q ss_pred             CeecCCChhhccChhhHHHHHHHhc
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKVHL   41 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~h~   41 (115)
                      |-+|++|.++..++..|+.|.++|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999988773

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.0013  Score=25.23  Aligned_cols=26  Identities=35%  Similarity=0.805  Sum_probs=23.3

Q ss_pred             CCCeecCCChhhccChhhHHHHHHHh
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      +..|.|..|...|+..-.|+.|+..|
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsh   27 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSH   27 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecc
Confidence            45799999999999999999999865

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0014  Score=25.28  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=18.0

Q ss_pred             CceecccccccccChhhHHHHHHHhc
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      +||+|..|.......++|..|++.-.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            36777777777777777777765543

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0011  Score=29.06  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=22.3

Q ss_pred             ceecccccccccChhhHHHHHHHhc
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h~   83 (115)
                      .|.|..||+.|.....|..|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5789999999999999999988774

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.26  E-value=0.0019  Score=24.88  Aligned_cols=25  Identities=36%  Similarity=0.781  Sum_probs=21.4

Q ss_pred             CCeecCC--ChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNM--CPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~--C~~~~~~~~~l~~h~~~h   40 (115)
                      +||.|.+  |.+.|.+...|.+|.-.|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~th   27 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTH   27 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhccc
Confidence            5788876  999999999999997755

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0014  Score=28.76  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=22.2

Q ss_pred             CCeecCCChhhccChhhHHHHHHHh
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      ..|.|..||+.|.....|+.|...|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            3578999999999999999998766

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.68  E-value=0.0049  Score=22.75  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=17.9

Q ss_pred             eecccccccccChhhHHHHHHH
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~   81 (115)
                      |.|+.|-+.|.+..++..|..+
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6788888888888888888664

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.67  E-value=0.00041  Score=28.18  Aligned_cols=26  Identities=19%  Similarity=0.121  Sum_probs=20.5

Q ss_pred             cCCCceeEEeecceehhhhhhccCCc
Q psy64            83 TGEKKYIFIVVKKIIVVIYAKKFSLD  108 (115)
Q Consensus        83 ~~~~~~~C~~C~~~~~~~~~~~~h~~  108 (115)
                      .|+..|+|.+|.+++...+.+.+|.-
T Consensus         4 Eg~~~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           4 EGEHTYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCcEEEeehhhHHHHHHHHHHHHHH
Confidence            35667888888888888888887754

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0068  Score=22.90  Aligned_cols=23  Identities=30%  Similarity=0.688  Sum_probs=19.2

Q ss_pred             eecccccccccChhhHHHHHHHh
Q psy64            60 FQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      |.|+.|+....+.+.|..|++.-
T Consensus         3 ~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHT
T ss_pred             ccCCcchhheeehhhhhHHhhhc
Confidence            78999998888999888887753

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=95.23  E-value=0.0014  Score=27.38  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=19.6

Q ss_pred             CCCceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            56 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        56 ~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      +++.|.|+.||..             +.|+.|-.|++|+..
T Consensus         2 ~~~~~vC~vCGyi-------------~~g~~Pe~CPvCg~~   29 (36)
T d1yuza2           2 DDKFHLCPICGYI-------------HKGEDFEKCPICFRP   29 (36)
T ss_dssp             SCCEEECSSSCCE-------------EESSCCSBCTTTCCB
T ss_pred             CCCEEECCCCCCE-------------eeCCCCCcCCCCCCc
Confidence            3566889999864             345667788888853

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0086  Score=24.29  Aligned_cols=24  Identities=50%  Similarity=0.702  Sum_probs=18.3

Q ss_pred             cccccccccChhhHHHHHHHhcCC
Q psy64            62 CKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        62 C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      |+--++.|.....|..|++.|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            333456688888999999999986

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.70  E-value=0.0023  Score=26.95  Aligned_cols=27  Identities=15%  Similarity=0.245  Sum_probs=19.5

Q ss_pred             CCceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        57 ~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      .+.|.|+.||..             +.|+.|-.|++|+..
T Consensus         3 ~~~~~C~vCG~i-------------~~g~~P~~CPvCg~~   29 (37)
T d1nnqa2           3 KKVYICPICGYT-------------AVDEAPEYCPVCGAP   29 (37)
T ss_dssp             SCEEECTTTCCE-------------EESCCCSBCTTTCCB
T ss_pred             CcEEECCCCCCE-------------ecCCCCCcCCCCCCc
Confidence            356889999864             345667788888863

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.017  Score=21.88  Aligned_cols=18  Identities=28%  Similarity=0.663  Sum_probs=13.8

Q ss_pred             ccccccChhhHHHHHHHh
Q psy64            65 CDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        65 c~~~~~~~~~l~~h~~~h   82 (115)
                      |++.|...+.+..|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            778888888777777665

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.034  Score=21.24  Aligned_cols=24  Identities=21%  Similarity=0.553  Sum_probs=19.4

Q ss_pred             ceecccccccccChhhHHHHHHHh
Q psy64            59 DFQCKVCDRAFFDVYNLKLHMRIH   82 (115)
Q Consensus        59 ~~~C~~c~~~~~~~~~l~~h~~~h   82 (115)
                      .|.|..||+.......++-|....
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEeec
Confidence            378999999999998888886553

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.03  E-value=0.016  Score=23.06  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             CCeecCCChhhccChhhHHHHHH
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYK   38 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~   38 (115)
                      ..|.|+.||-.|.+.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            45889999999999999988864

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.88  E-value=0.032  Score=24.24  Aligned_cols=27  Identities=22%  Similarity=0.735  Sum_probs=23.4

Q ss_pred             CCCCeecCCChhhccChhhHHHHHHHh
Q psy64            14 TDRPFVCNMCPSTFKLKKHLRQHYKVH   40 (115)
Q Consensus        14 ~~~~~~C~~C~~~~~~~~~l~~h~~~h   40 (115)
                      .+.|..|++|+-..+...+|++|....
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~   47 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999998753

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.0091  Score=28.01  Aligned_cols=40  Identities=18%  Similarity=0.365  Sum_probs=27.9

Q ss_pred             cCCCceecccccccccChhhHHHHHHHhcCCCceeEEeeccee
Q psy64            55 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKII   97 (115)
Q Consensus        55 ~~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~   97 (115)
                      .....|.|+.|++.|..-...+.   .......|.|..|+...
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCBC
T ss_pred             ccCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCEE
Confidence            34567999999998887655432   33345679999998643

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.73  E-value=0.052  Score=23.52  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             CCCceecccccccccChhhHHHHHHHhcCCC
Q psy64            56 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK   86 (115)
Q Consensus        56 ~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~~   86 (115)
                      .+.|-.|+.|+-....+.+|.+|...-.-.+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            4567788888888888888888876644333

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.0035  Score=30.00  Aligned_cols=19  Identities=47%  Similarity=0.878  Sum_probs=9.4

Q ss_pred             eecccccccccChhhHHHH
Q psy64            60 FQCKVCDRAFFDVYNLKLH   78 (115)
Q Consensus        60 ~~C~~c~~~~~~~~~l~~h   78 (115)
                      |-|..|++.|.+...|..|
T Consensus        16 fYCv~C~K~F~se~~l~~H   34 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTH   34 (67)
T ss_dssp             SEETTTTEECSSHHHHHHH
T ss_pred             EecccccCccCCHHHHHHH
Confidence            4455555555555544444

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.30  E-value=0.054  Score=21.01  Aligned_cols=28  Identities=32%  Similarity=0.743  Sum_probs=19.6

Q ss_pred             Cceecc--cccccccChhhHHHHHHHhcCC
Q psy64            58 RDFQCK--VCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        58 ~~~~C~--~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      +.|.|.  .|+-.|.....|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            345563  4777777777788887777765

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.19  E-value=0.039  Score=20.57  Aligned_cols=24  Identities=38%  Similarity=0.683  Sum_probs=18.3

Q ss_pred             eecc--cccccccChhhHHHHHHHhc
Q psy64            60 FQCK--VCDRAFFDVYNLKLHMRIHT   83 (115)
Q Consensus        60 ~~C~--~c~~~~~~~~~l~~h~~~h~   83 (115)
                      |.|.  .|+++|.....|..|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            4453  38999999988988887764

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.065  Score=24.96  Aligned_cols=30  Identities=33%  Similarity=0.640  Sum_probs=25.3

Q ss_pred             CCCceecccccccccChhhHHHHHHHhcCC
Q psy64            56 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGE   85 (115)
Q Consensus        56 ~~~~~~C~~c~~~~~~~~~l~~h~~~h~~~   85 (115)
                      +...|+|..|.-.|...+.|..|...|.+|
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            445689999999999999999999888643

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.051  Score=25.77  Aligned_cols=25  Identities=4%  Similarity=-0.118  Sum_probs=22.0

Q ss_pred             CCceeEEeecceehhhhhhccCCcc
Q psy64            85 EKKYIFIVVKKIIVVIYAKKFSLDI  109 (115)
Q Consensus        85 ~~~~~C~~C~~~~~~~~~~~~h~~~  109 (115)
                      ...|-|..|++.|.+...|..|+++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3458999999999999999999875

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.12  Score=19.53  Aligned_cols=19  Identities=26%  Similarity=0.394  Sum_probs=15.4

Q ss_pred             ccccccccChhhHHHHHHH
Q psy64            63 KVCDRAFFDVYNLKLHMRI   81 (115)
Q Consensus        63 ~~c~~~~~~~~~l~~h~~~   81 (115)
                      +.||+.|+....|..|.+-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            4599999999999888664

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=89.32  E-value=0.023  Score=24.78  Aligned_cols=37  Identities=11%  Similarity=0.213  Sum_probs=22.1

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecce
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKI   96 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~   96 (115)
                      +.|+|..||..+.....-  -.....-..-|.|++|+..
T Consensus         2 ~~y~C~~CgyiYd~~~Gd--gt~Fe~LP~dw~CP~C~a~   38 (45)
T d6rxna_           2 QKYVCNVCGYEYDPAEHD--NVPFDQLPDDWCCPVCGVS   38 (45)
T ss_dssp             CCEEETTTCCEECGGGGT--TCCGGGSCTTCBCTTTCCB
T ss_pred             CCeEeCCCCeEECcccCC--CCCHHHCCCCCCCcCCCCc
Confidence            358999999888654321  0111122234889999864

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.44  E-value=0.085  Score=27.20  Aligned_cols=29  Identities=24%  Similarity=0.569  Sum_probs=21.6

Q ss_pred             CCeecCCChhhccChhhHHHHHHHhcChhHHHHHHHHhhcCCCceecccccccc
Q psy64            16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAF   69 (115)
Q Consensus        16 ~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~l~~h~~~~h~~~~~~~C~~c~~~~   69 (115)
                      .|..|..||..|+..                         -.+|-+||.|.-.+
T Consensus        66 ~Pp~CrkCGfvFr~~-------------------------~kkPSRCP~CKSE~   94 (105)
T d2gmga1          66 KPAQCRKCGFVFKAE-------------------------INIPSRCPKCKSEW   94 (105)
T ss_dssp             CCCBBTTTCCBCCCC-------------------------SSCCSSCSSSCCCC
T ss_pred             eChhhhhcCCeeccc-------------------------CCCCCCCCCCCCcc
Confidence            578899999999632                         14678999996443

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=86.91  E-value=0.27  Score=18.60  Aligned_cols=22  Identities=27%  Similarity=0.842  Sum_probs=17.7

Q ss_pred             CeecCC--ChhhccChhhHHHHHH
Q psy64            17 PFVCNM--CPSTFKLKKHLRQHYK   38 (115)
Q Consensus        17 ~~~C~~--C~~~~~~~~~l~~h~~   38 (115)
                      .|.|..  |+..|..+.++..|-.
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHh
Confidence            467765  9999999999988853

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=85.31  E-value=0.085  Score=25.33  Aligned_cols=32  Identities=16%  Similarity=0.216  Sum_probs=23.4

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   99 (115)
                      ..|.|+.||+.-...          .....|.|..|+++|..
T Consensus        26 ~ky~Cp~Cgk~~vkR----------~a~GIW~C~kC~~~~AG   57 (73)
T d1vqoz1          26 EDHACPNCGEDRVDR----------QGTGIWQCSYCDYKFTG   57 (73)
T ss_dssp             SCBCCSSSSCSCEEE----------EETTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCceeEE----------EEEEEEECCCCCCEEeC
Confidence            468999999753222          23458999999999875

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.51  E-value=0.11  Score=24.88  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=22.9

Q ss_pred             CceecccccccccChhhHHHHHHHhcCCCceeEEeecceehh
Q psy64            58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYIFIVVKKIIVV   99 (115)
Q Consensus        58 ~~~~C~~c~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   99 (115)
                      ..|.|+.||+.-...          .....|.|..|++.|..
T Consensus        26 ~ky~Cp~Cgk~~vkR----------~a~GIW~C~kC~~~~AG   57 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKR----------AGTGIWMCGHCGYKIAG   57 (73)
T ss_dssp             SCBCCSSSCCSCEEE----------EETTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCCceEE----------EEEEEEECCCCCCEEeC
Confidence            468999999643222          22458999999999875

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.94  E-value=0.42  Score=17.39  Aligned_cols=18  Identities=28%  Similarity=0.571  Sum_probs=14.0

Q ss_pred             ecCCChhhccChhhHHHH
Q psy64            19 VCNMCPSTFKLKKHLRQH   36 (115)
Q Consensus        19 ~C~~C~~~~~~~~~l~~h   36 (115)
                      .|++|...|.++..-..|
T Consensus         2 vcpycslrf~sp~lk~eh   19 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEH   19 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHh
Confidence            599999999987755544

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=0.29  Score=21.23  Aligned_cols=22  Identities=18%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             CeecCCChhhccChhhHHHHHH
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYK   38 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~   38 (115)
                      +-.|..|+..|....+++.|.-
T Consensus         6 ~~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHT
T ss_pred             cccCcccceeeeeecchHhhhh
Confidence            3689999999999999999974

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=0.21  Score=20.16  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             CeecCCChhhccChhhHHHHHHH
Q psy64            17 PFVCNMCPSTFKLKKHLRQHYKV   39 (115)
Q Consensus        17 ~~~C~~C~~~~~~~~~l~~h~~~   39 (115)
                      ...|-+|-++|++..++.+|+..
T Consensus         3 kltclecmrtfkssfsiwrhqve   25 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQVE   25 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhhe
Confidence            35799999999999999999753

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.43  E-value=0.97  Score=17.95  Aligned_cols=24  Identities=29%  Similarity=0.674  Sum_probs=21.3

Q ss_pred             CCCeecCCChhhccChhhHHHHHH
Q psy64            15 DRPFVCNMCPSTFKLKKHLRQHYK   38 (115)
Q Consensus        15 ~~~~~C~~C~~~~~~~~~l~~h~~   38 (115)
                      .+.|.|+.|-+=.++...+.+|+.
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHH
Confidence            467999999999999999999975