Psyllid ID: psy6537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MKYIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK
Secondary Structure (PSIPRED)
cccEEEccccccccccccccccccccccccccEEEEcccccEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccccccccccccccccccEcccccEEccccEccccccccccccccccccc
Coil and Loop (DISEMBL)
MKYIRLClgcatsyvppvttpayyptvscawsefschdrlqcvplsarcngvsdcrdysdevncgk
Flexible Loop (DISEMBL)
MKYIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLsarcngvsdcrdysdevncgk
Low Complexity Region (SEG)
MKYIRLCLGCatsyvppvttpayyptvsCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK
Disordered region (IsUnstruct)
**YIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDY********
Disordered Region (DISOPRED)
MKYIRLCLGCATSYVPP**********SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG*
Disordered Region (DISEMBL)
MKYIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCR**********
Disordered Region (DISPRO)
MKYIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVS*C***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKYIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
Q06561	3375	Basement membrane proteog	no	N/A	0.530	0.010	0.611	3e-06
P46023	1115	G-protein coupled recepto	N/A	N/A	0.545	0.032	0.513	0.0002
Q05793	3707	Basement membrane-specifi	no	N/A	0.606	0.010	0.512	0.0003
P98160	4391	Basement membrane-specifi	yes	N/A	0.545	0.008	0.513	0.0003
Q5VYJ5	1473	MAM and LDL-receptor clas	no	N/A	0.787	0.035	0.444	0.0004
Q6R6I6	758	Relaxin receptor 1 OS=Rat	yes	N/A	0.590	0.051	0.461	0.0004
P98163	1984	Putative vitellogenin rec	no	N/A	0.621	0.020	0.452	0.0006
Q04833	4753	Low-density lipoprotein r	no	N/A	0.590	0.008	0.5	0.0008
Q5R5V8	757	Relaxin receptor 1 OS=Pon	no	N/A	0.590	0.051	0.435	0.0008

>sp|Q06561|UNC52_CAEEL Basement membrane proteoglycan OS=Caenorhabditis elegans GN=unc-52 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 29  CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct: 233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

Probable role in myofilament assembly and/or attachment of the myofilament lattice to the cell membrane. May be an extracellular anchor for integrin receptors in muscle.
Caenorhabditis elegans (taxid: 6239)

>sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 OS=Lymnaea stagnalis PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 28  SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
            C+  EF CH   +C+P+S RC+ V DC D+SDE+NC
Sbjct: 366 KCSQDEFQCH-HGKCIPISKRCDSVHDCVDWSDEMNC 401

Might directly transduce signals carried by large extracellular (lipo)protein(complexe)s into neuronal events.

Lymnaea stagnalis (taxid: 6523)

>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 24  YPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           +P V C  +EF+CH   +CV L  RC+   DCRD SDE+NC
Sbjct: 195 FPRV-CTETEFACHSYNECVALEYRCDRRPDCRDMSDELNC 234

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Mus musculus (taxid: 10090)

>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 28  SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           +C  +EF+CH   +CV L  RC+   DCRD SDE+NC
Sbjct: 198 ACTEAEFACHSYNECVALEYRCDRRPDCRDMSDELNC 234

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Homo sapiens (taxid: 9606)

>sp|Q5VYJ5|CJ112_HUMAN MAM and LDL-receptor class A domain-containing protein C10orf112 OS=Homo sapiens GN=C10orf112 PE=2 SV=3

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 13   SYVPPVTTPAYYPTVS--CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
            S+ P   T    P     C   +FSC   LQCVPLS +C+G  DC D SDE++C
Sbjct: 1251 SFTPECVTGGPVPVQPSPCEADQFSCIYTLQCVPLSGKCDGHEDCIDGSDEMDC 1304

Homo sapiens (taxid: 9606)

>sp|Q6R6I6|RXFP1_RAT Relaxin receptor 1 OS=Rattus norvegicus GN=Rxfp1 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
          VSC    F C +  +C+P    CNGV DC + +DE NCG
Sbjct: 25 VSCPLGSFPCGNISKCLPQLLHCNGVDDCGNQADEDNCG 63

Receptor for relaxins. The activity of this receptor is mediated by G proteins leading to stimulation of adenylate cyclase and an increase of cAMP. Binding of the ligand may also activate a tyrosine kinase pathway that inhibits the activity of a phosphodiesterase that degrades cAMP.

Rattus norvegicus (taxid: 10116)

>sp|P98163|YL_DROME Putative vitellogenin receptor OS=Drosophila melanogaster GN=yl PE=1 SV=2

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 25   PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK 66
            P V C+ ++F+CH   QCV    RC+   DC D+SDE +C K
Sbjct: 1070 PKVLCSPNQFACHSGEQCVDKERRCDNRKDCHDHSDEQHCEK 1111

Involved in uptake of vitellogenin by endocytosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 25   PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
            P V C+  +F C +  QCVPL   C+G SDC D SDE +C
Sbjct: 1224 PPVQCSALQFRCANGRQCVPLRNHCDGQSDCEDGSDEDSC 1263

May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5R5V8|RXFP1_PONAB Relaxin receptor 1 OS=Pongo abelii GN=RXFP1 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
          V C+   F C +  +C+P    CNGV DC + +DE NCG
Sbjct: 25 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 63

Receptor for relaxins. The activity of this receptor is mediated by G proteins leading to stimulation of adenylate cyclase and an increase of cAMP. Binding of the ligand may also activate a tyrosine kinase pathway that inhibits the activity of a phosphodiesterase that degrades cAMP.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
242005391	4375	predicted protein [Pediculus humanus cor	0.651	0.009	0.545	7e-06
328721788	3957	PREDICTED: basement membrane-specific he	0.848	0.014	0.424	1e-05
195059155	1879	GH17685 [Drosophila grimshawi] gi|193896	0.575	0.020	0.552	6e-05
289722	2481	basement membrane proteoglycan [Caenorha	0.545	0.014	0.611	0.0001
392892560	2383	Protein UNC-52, isoform m [Caenorhabditi	0.545	0.015	0.611	0.0001
17536621	2482	Protein UNC-52, isoform a [Caenorhabditi	0.545	0.014	0.611	0.0001
71998539	2389	Protein UNC-52, isoform f [Caenorhabditi	0.545	0.015	0.611	0.0001
392892549	2193	Protein UNC-52, isoform l [Caenorhabditi	0.545	0.016	0.611	0.0001
392892551	2296	Protein UNC-52, isoform k [Caenorhabditi	0.545	0.015	0.611	0.0001
308484131	3425	CRE-UNC-52 protein [Caenorhabditis reman	0.560	0.010	0.594	0.0001

>gi|242005391|ref|XP_002423552.1| predicted protein [Pediculus humanus corporis] gi|212506681|gb|EEB10814.1| predicted protein [Pediculus humanus corporis]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 24  YPT-VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK 66
           YP  V+C + +F+CH   QC+P S+RC+G   CRDYSDE+NCG+
Sbjct: 933 YPGPVTCNFGQFACHSGDQCIPQSSRCDGHYQCRDYSDELNCGE 976

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721788|ref|XP_001945240.2| PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Acyrthosiphon pisum]

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 17/73 (23%)

Query: 8   LGCATSYVPPVTTP---------AYYPT-------VSCAWSEFSCHDRLQCVPLSARCNG 51
           L CA + +P +TTP           YP        V+C W+EF+C +  QCVP SA+CN 
Sbjct: 654 LDCAPT-IPTITTPNVTNIATTTVIYPQYENPPVFVTCNWNEFACRNGRQCVPKSAKCNN 712

Query: 52  VSDCRDYSDEVNC 64
             +C+DYSDE NC
Sbjct: 713 NYECQDYSDEDNC 725

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195059155|ref|XP_001995574.1| GH17685 [Drosophila grimshawi] gi|193896360|gb|EDV95226.1| GH17685 [Drosophila grimshawi]

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 27   VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
            V C  +EF+CHD  QC+  S RC+G  DC+DYSDE++C
Sbjct: 1012 VKCGMAEFTCHDGQQCLEKSKRCDGHKDCQDYSDELHC 1049

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289722|gb|AAA28156.1| basement membrane proteoglycan [Caenorhabditis elegans]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 29  CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct: 233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|392892560|ref|NP_001254444.1| Protein UNC-52, isoform m [Caenorhabditis elegans] gi|379697491|emb|CCG28426.1| Protein UNC-52, isoform m [Caenorhabditis elegans]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 29  CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct: 233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|17536621|ref|NP_497046.1| Protein UNC-52, isoform a [Caenorhabditis elegans] gi|3881357|emb|CAB07706.1| Protein UNC-52, isoform a [Caenorhabditis elegans]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 29  CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct: 233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|71998539|ref|NP_001022488.1| Protein UNC-52, isoform f [Caenorhabditis elegans] gi|50507820|emb|CAH04744.1| Protein UNC-52, isoform f [Caenorhabditis elegans]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 29  CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct: 233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|392892549|ref|NP_001254439.1| Protein UNC-52, isoform l [Caenorhabditis elegans] gi|379697495|emb|CCG28430.1| Protein UNC-52, isoform l [Caenorhabditis elegans]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 29  CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct: 233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|392892551|ref|NP_001254440.1| Protein UNC-52, isoform k [Caenorhabditis elegans] gi|379697494|emb|CCG28429.1| Protein UNC-52, isoform k [Caenorhabditis elegans]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 29  CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct: 233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|308484131|ref|XP_003104266.1| CRE-UNC-52 protein [Caenorhabditis remanei] gi|308258235|gb|EFP02188.1| CRE-UNC-52 protein [Caenorhabditis remanei]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 25/37 (67%)

Query: 28  SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
            C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct: 249 GCKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 285

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
WB|WBGene00006787	3375	unc-52 [Caenorhabditis elegans	0.545	0.010	0.611	1.2e-06
UNIPROTKB|Q06561	3375	unc-52 "Basement membrane prot	0.545	0.010	0.611	1.2e-06
WB|WBGene00015083	551	egg-1 [Caenorhabditis elegans	0.575	0.068	0.5	2.7e-06
UNIPROTKB|E7EPJ0	350	C10orf112 "MAM and LDL-recepto	0.545	0.102	0.555	5.9e-06
UNIPROTKB|H0Y3D6	507	C10orf112 "MAM and LDL-recepto	0.545	0.071	0.555	1.1e-05
WB|WBGene00019811	548	egg-2 [Caenorhabditis elegans	0.575	0.069	0.473	1.2e-05
UNIPROTKB|F1MFJ4	1395	Bt.111928 "Uncharacterized pro	0.545	0.025	0.527	3.7e-05
UNIPROTKB|Q5VYJ5	1473	C10orf112 "MAM and LDL-recepto	0.545	0.024	0.555	4e-05
MGI|MGI:2155445	453	Tmprss3 "transmembrane proteas	0.530	0.077	0.444	5.1e-05
ZFIN|ZDB-GENE-060526-27	1355	si:ch211-12e13.2 "si:ch211-12e	0.545	0.026	0.527	5.9e-05

WB|WBGene00006787 unc-52 [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct:   233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0061199 "striated muscle contraction involved in embryonic body morphogenesis" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0016358 "dendrite development" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0016477 "cell migration" evidence=IGI

GO:0048644 "muscle organ morphogenesis" evidence=IGI

GO:0005604 "basement membrane" evidence=IDA

GO:0005198 "structural molecule activity" evidence=ISS

GO:0031581 "hemidesmosome assembly" evidence=IGI

GO:0040017 "positive regulation of locomotion" evidence=IMP

UNIPROTKB|Q06561 unc-52 "Basement membrane proteoglycan" [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             C  +EF CHDR QCVP S  C+G +DC D SDEV C
Sbjct:   233 CKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDEVGC 268

GO:0003674 "molecular_function" evidence=ND

GO:0030239 "myofibril assembly" evidence=IEP

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

WB|WBGene00015083 egg-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK 66
             C+  +F C     C+PLSA+C+G++DC D SDE NC K
Sbjct:   216 CSKDQFKCPGSNACLPLSAKCDGINDCADASDEKNCSK 253

GO:0016021 "integral to membrane" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007338 "single fertilization" evidence=IMP

UNIPROTKB|E7EPJ0 C10orf112 "MAM and LDL-receptor class A domain-containing protein C10orf112" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             C   +FSC   LQCVPLS +C+G  DC D SDE++C
Sbjct:    97 CEADQFSCIYTLQCVPLSGKCDGHEDCIDGSDEMDC 132

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|H0Y3D6 C10orf112 "MAM and LDL-receptor class A domain-containing protein C10orf112" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             C   +FSC   LQCVPLS +C+G  DC D SDE++C
Sbjct:   254 CEADQFSCIYTLQCVPLSGKCDGHEDCIDGSDEMDC 289

GO:0016020 "membrane" evidence=IEA

WB|WBGene00019811 egg-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 112 (44.5 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK 66
             C+  +F C     C+P+S +C+GVSDC + SDE NC K
Sbjct:   216 CSKDQFKCSGSDACLPISVKCDGVSDCENESDESNCNK 253

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007338 "single fertilization" evidence=IMP

UNIPROTKB|F1MFJ4 Bt.111928 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             C   +FSC   +QCVPL+ +CNG  DC D SDE++C
Sbjct:  1275 CEADQFSCIYVVQCVPLAGKCNGQEDCTDGSDEMDC 1310

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q5VYJ5 C10orf112 "MAM and LDL-receptor class A domain-containing protein C10orf112" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             C   +FSC   LQCVPLS +C+G  DC D SDE++C
Sbjct:  1269 CEADQFSCIYTLQCVPLSGKCDGHEDCIDGSDEMDC 1304

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2155445 Tmprss3 "transmembrane protease, serine 3" [Mus musculus (taxid:10090)]

 Score = 105 (42.0 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             C+  ++ CH   +C+ L+ARC+GVSDC++  DE  C
Sbjct:    73 CS-GKYRCHSSFKCIELTARCDGVSDCKNAEDEYRC 107

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006883 "cellular sodium ion homeostasis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IDA

ZFIN|ZDB-GENE-060526-27 si:ch211-12e13.2 "si:ch211-12e13.2" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query:    29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             C   +FSC  + QC+P S RC+G  DCRD SDE  C
Sbjct:   388 CGEYQFSCSSKTQCIPQSWRCDGSEDCRDGSDESAC 423

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P98160	PGBM_HUMAN	No assigned EC number	0.5135	0.5454	0.0081	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	66
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	6e-08
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	7e-07
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	3e-05

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 43.0 bits (102), Expect = 6e-08
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          C  +EF C +  +C+P S  C+G  DC D SDE NC
Sbjct: 1  CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 40.7 bits (96), Expect = 7e-07
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          C   EF C    +C+P+S  C+G  DC D SDE NC
Sbjct: 3  CGPDEFQCGSG-ECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 36.5 bits (85), Expect = 3e-05
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDE 61
          C   EF C +  +C+P S  C+GV DC D SDE
Sbjct: 2  CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.52
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.48
smart00192	33	LDLa Low-density lipoprotein receptor domain class	99.25
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	97.29
KOG1215|consensus	877		97.16
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	96.59
KOG1215|consensus	877		95.87
KOG2397|consensus	480		92.24

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.52  E-value=1.2e-14  Score=70.73  Aligned_cols=36  Identities=50%  Similarity=1.022  Sum_probs=33.9

Q ss_pred             CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      .|+.++|+|.+ +.||+..|+|||+.||.|||||.+|
T Consensus         2 ~C~~~~f~C~~-~~CI~~~~~CDg~~DC~dgsDE~~C   37 (37)
T PF00057_consen    2 TCPPGEFRCGN-GQCIPKSWVCDGIPDCPDGSDEQNC   37 (37)
T ss_dssp             SSSTTEEEETT-SSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred             cCcCCeeEcCC-CCEEChHHcCCCCCCCCCCcccccC
Confidence            58899999999 8899999999999999999999876

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.48  E-value=2.3e-14  Score=68.84  Aligned_cols=35  Identities=49%  Similarity=0.985  Sum_probs=32.8

Q ss_pred             CCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        29 C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      |+..+|+|.+ ++||+..++|||+.||.|+|||.+|
T Consensus         1 C~~~~f~C~~-~~Ci~~~~~CDg~~DC~dgsDE~~C   35 (35)
T cd00112           1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEENC   35 (35)
T ss_pred             CCCCeEEcCC-CCeeCHHHcCCCccCCCCCcccccC
Confidence            5678999999 9999999999999999999999876

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=99.25  E-value=6.6e-12  Score=59.44  Aligned_cols=32  Identities=53%  Similarity=1.076  Sum_probs=29.7

Q ss_pred             CCCCceeeCCCCceecCCcCCCCCCCCCCCCCC
Q psy6537          29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDE   61 (66)
Q Consensus        29 C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE   61 (66)
                      |+..+|+|.+ +.||+..++|||+.||.|+|||
T Consensus         2 C~~~~f~C~~-~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDN-GRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCC-CCEECchhhCCCcCcCcCCCCC
Confidence            6667999998 8999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=97.29  E-value=0.00029  Score=44.46  Aligned_cols=36  Identities=36%  Similarity=0.697  Sum_probs=32.0

Q ss_pred             CCCCCCCceeeCCCC---ceecCCcCCCCCCC---CCCCCCC
Q psy6537          26 TVSCAWSEFSCHDRL---QCVPLSARCNGVSD---CRDYSDE   61 (66)
Q Consensus        26 ~~~C~~~~f~C~~~g---~Ci~~~~~CDg~~d---C~dgsDE   61 (66)
                      ...|+.+.|.|.|.|   .-|+..++-||+=|   |-|||||
T Consensus        69 TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE  110 (176)
T PF12999_consen   69 TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE  110 (176)
T ss_pred             cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence            356888899999965   68999999999999   9999999

>KOG1215|consensus

Probab=97.16  E-value=0.00061  Score=50.74  Aligned_cols=38  Identities=42%  Similarity=0.962  Sum_probs=33.8

Q ss_pred             CCCCCCceeeC--CCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          27 VSCAWSEFSCH--DRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        27 ~~C~~~~f~C~--~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ..|....|+|.  + .+||+..|+||+..+|.||+||.+|.
T Consensus       136 ~~~~~~~~~c~~~~-~~Cip~~~~cd~~~~C~dg~de~~~~  175 (877)
T KOG1215|consen  136 SHCCLDKFSCRTGS-CKCIPGDWLCDGEADCPDGSDELNCA  175 (877)
T ss_pred             ccccCCCCCCcCcc-ccCCCCceeCCCCCccccchhhhccc
Confidence            55677899998  6 89999999999999999999998873

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=96.59  E-value=0.0015  Score=41.23  Aligned_cols=33  Identities=33%  Similarity=0.552  Sum_probs=27.7

Q ss_pred             CCCceeeCCCCce-ecCCcCCCCCCCCCCCCCCC
Q psy6537          30 AWSEFSCHDRLQC-VPLSARCNGVSDCRDYSDEV   62 (66)
Q Consensus        30 ~~~~f~C~~~g~C-i~~~~~CDg~~dC~dgsDE~   62 (66)
                      ..+.|.|.++..= |+..++.|+.=||+|||||-
T Consensus        34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEP   67 (176)
T PF12999_consen   34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEP   67 (176)
T ss_pred             CCCceEecCCCCceecHHHccCcceeCCCCCCcc
Confidence            3457999984344 89999999999999999996

>KOG1215|consensus

Probab=95.87  E-value=0.0091  Score=44.63  Aligned_cols=40  Identities=33%  Similarity=0.632  Sum_probs=34.8

Q ss_pred             CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ....|...+|.|.+ +.|++..++|+|..||++|+||..|.
T Consensus       256 ~~~~~~~~e~~~~~-~~~~~~~~~~~g~~d~pdg~de~~~~  295 (877)
T KOG1215|consen  256 SDATCEAPEIECAD-GDCSDRQKLCDGDLDCPDGLDEDYCK  295 (877)
T ss_pred             eccccCCcceeecC-CCCccceEEecCccCCCCcccccccc
Confidence            34567777999988 99999999999999999999998775

>KOG2397|consensus

Probab=92.24  E-value=0.14  Score=36.80  Aligned_cols=37  Identities=35%  Similarity=0.629  Sum_probs=32.5

Q ss_pred             CCCCCCCceeeCCCC---ceecCCcCCCCCCCCCCCCCCC
Q psy6537          26 TVSCAWSEFSCHDRL---QCVPLSARCNGVSDCRDYSDEV   62 (66)
Q Consensus        26 ~~~C~~~~f~C~~~g---~Ci~~~~~CDg~~dC~dgsDE~   62 (66)
                      ...|+.+.|.|.|.|   .-|+...+=||+=||-|||||.
T Consensus        75 tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~  114 (480)
T KOG2397|consen   75 TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEY  114 (480)
T ss_pred             cccCCCCceeeeecCCCceeeechhccCcccccccCCCCc
Confidence            457999999998865   5888999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	9e-11
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	3e-10
1cr8_A	42	Protein (LOW density lipoprotein receptor related	3e-09
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-08
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	2e-08
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	4e-08
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	3e-08
3a7q_B	44	Low-density lipoprotein receptor-related protein;	1e-07
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	1e-07
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	1e-07
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	3e-07
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	3e-07
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-06
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	3e-07
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	4e-07
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	7e-07
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	9e-06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-04
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	2e-05
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-04

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 50.0 bits (120), Expect = 9e-11
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
            ++C  ++F C D   C+    RC+GV DCRD SDE  C
Sbjct: 3  MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 48.9 bits (117), Expect = 3e-10
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
           V C+   F C +  +C+P    CNGV DC + +DE NCG
Sbjct: 4  DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 46.1 bits (110), Expect = 3e-09
 Identities = 17/37 (45%), Positives = 21/37 (56%)

Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C   EF C     C+PL  RC+G +DC D SDE +C
Sbjct: 3  GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 44.3 bits (105), Expect = 2e-08
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
             +C  S FSC     CVP    C+G  DC D +DE    
Sbjct: 3  EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 45.0 bits (107), Expect = 2e-08
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          P ++C  + F C+    C+P    C+   DC D SDE   
Sbjct: 38 PVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQ 76

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 44.2 bits (105), Expect = 4e-08
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK 66
          +C+ +EF CHD  +C+     C+   DC D SDE +C  
Sbjct: 2  TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPV 39

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 43.3 bits (103), Expect = 3e-08
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
          C+  EF C    +C+  S RC+G  DC+D SDE NC 
Sbjct: 2  CSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENCA 37

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 42.3 bits (100), Expect = 1e-07
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK 66
          P   C   +F C +  +C+P   RC+   DC D+SDE +C K
Sbjct: 4  PAKECEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDCPK 44

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 43.3 bits (102), Expect = 1e-07
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
             +C  S FSC     CVP    C+G  DC D +DE    
Sbjct: 5  EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 45

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 42.0 bits (99), Expect = 1e-07
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 29 CAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNCG 65
          C   E SC     QC+P+S RC+G +DC    DE NCG
Sbjct: 1  CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 41.3 bits (97), Expect = 3e-07
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 28 SCAWSEFSCHDRL----QCVPLSARCNGVSDCRDYSDEVNCG 65
          SC   +F C +      +C P    C+G  DC D  DE  CG
Sbjct: 6  SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 42.3 bits (100), Expect = 3e-07
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
             ++F+C++  +C+ ++ RC+  +DC D SDE  C
Sbjct: 46 FPLTQFTCNNG-RCININWRCDNDNDCGDNSDEAGC 80

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 40.3 bits (95), Expect = 1e-06
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          +C  ++FSC    +C+P+S  C+   DC D SDE   
Sbjct: 4  TCPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESAS 39

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 41.3 bits (97), Expect = 3e-07
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 26 TVSCAWSEFSCHDRL----QCVPLSARCNGVSDCRDYSDEVNCG 65
          +  C   +F C +      +C P    C+G  DC D  DE  CG
Sbjct: 2  SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 40.7 bits (96), Expect = 4e-07
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          SC+ ++F C+   +C+P    C+G +DC DYSDE + 
Sbjct: 4  SCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHA 39

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 40.0 bits (94), Expect = 7e-07
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
              C   EF+C +  +C+    +C+G +DC D SDE   
Sbjct: 2  SPPQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA 40

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 40.2 bits (93), Expect = 9e-06
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 16  PPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
              +        +C   EF C D   C+  S +C+   DC+D SDEV C
Sbjct: 202 KDKSDEENCAVATCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGC 249

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 20 TPAYYPTVSCAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNC 64
          +     +V+C   +FSC  R+ +C+P   RC+G  DC + SDE  C
Sbjct: 38 SQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 83

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 20  TPAYYPTVSCAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNC 64
           +     +V+C   +FSC  R+ +C+P   RC+G  DC + SDE  C
Sbjct: 56  SQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 101

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 25  PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
            +  C+  EF C    +C+  S RC+G  DC+D SDE NC 
Sbjct: 190 DSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENCA 229

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 36.0 bits (82), Expect = 2e-04
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 25  PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           P  +C+  EF CHD  +C+     C+   DC D SDE +C
Sbjct: 102 PPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASC 140

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 35.6 bits (81), Expect = 3e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
          C  +EF C D  +C+     C+G ++C+D SDE    
Sbjct: 24 CERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQET 59

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 34.8 bits (79), Expect = 6e-04
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 25  PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65
           P ++C  + F C+    C+P    C+   DC D SDE    
Sbjct: 141 PVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQR 180

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 27 VSCAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNCG 65
           SC   E  C     QC+     C+G +DCR+  DE +C 
Sbjct: 53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT 92

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 28  SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           S     F C +  + +     C+G++DC D SDE+ C
Sbjct: 203 SPMDDFFQCVNG-KYISQMKACDGINDCGDQSDELCC 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.61
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.58
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.58
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.57
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.56
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.55
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.54
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.53
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.48
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.48
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.46
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.45
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.45
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.4
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.38
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.35
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.35
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	99.15
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.11
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	99.06
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	99.0
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.97
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.96
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.85
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.76
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	98.61
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.54
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.5

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.61  E-value=8.2e-16  Score=75.81  Aligned_cols=40  Identities=43%  Similarity=0.833  Sum_probs=36.2

Q ss_pred             CCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537          27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK   66 (66)
Q Consensus        27 ~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~   66 (66)
                      ..|...+|+|.++++||+..|+|||+.||.|||||.+|.+
T Consensus         2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~~   41 (42)
T 1cr8_A            2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG   41 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred             CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCCC
Confidence            4688899999855899999999999999999999999964

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.58  E-value=1.4e-15  Score=73.19  Aligned_cols=37  Identities=46%  Similarity=0.922  Sum_probs=34.5

Q ss_pred             CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      .|+..+|+|.+ |+||+..|+|||+.||.|||||.+|.
T Consensus         1 ~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~   37 (37)
T 1ajj_A            1 PCSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCCTTCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCCCCceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence            37889999998 99999999999999999999999984

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.2e-15  Score=75.84  Aligned_cols=40  Identities=38%  Similarity=0.830  Sum_probs=34.1

Q ss_pred             CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537          26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK   66 (66)
Q Consensus        26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~   66 (66)
                      ...|+..+|+|.+ ++||+..|+|||+.||.|+|||.+|.+
T Consensus         5 ~~~C~~~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~~   44 (44)
T 3a7q_B            5 AKECEKDQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCPK   44 (44)
T ss_dssp             ---CCTTEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC--
T ss_pred             CCCCCCCceEcCC-CCEeChhhccCCCCCCCCCccccCCCC
Confidence            4568899999999 999999999999999999999999964

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.57  E-value=2.9e-15  Score=74.15  Aligned_cols=40  Identities=43%  Similarity=0.975  Sum_probs=36.5

Q ss_pred             CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ...|+.++|+|.++++||+..|+|||+.||.|+|||.+|.
T Consensus         4 ~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~   43 (43)
T 2jm4_A            4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG   43 (43)
T ss_dssp             SCSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred             CCCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence            4568899999988679999999999999999999999984

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.56  E-value=2.4e-15  Score=73.07  Aligned_cols=38  Identities=47%  Similarity=1.008  Sum_probs=34.5

Q ss_pred             CCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537          29 CAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEVNCGK   66 (66)
Q Consensus        29 C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~~C~~   66 (66)
                      |++.+|+|.+ +++||+..|+|||+.||.|+|||.+|..
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~~   39 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN   39 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCCC
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCCC
Confidence            6778999986 4899999999999999999999999964

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.55  E-value=1.4e-15  Score=78.14  Aligned_cols=40  Identities=35%  Similarity=0.764  Sum_probs=36.4

Q ss_pred             CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ++..|+..+|+|.+ |+||+..|+|||+.||.|||||.+|.
T Consensus         3 ~p~~C~~~~F~C~n-G~CIp~~~~CDG~~DC~DgSDE~~~~   42 (52)
T 2m0p_A            3 APASCLDTQYTCDN-HQCISKNWVCDTDNDCGDGSDEKNCN   42 (52)
T ss_dssp             CCCSSCSSEEECTT-CCEEETTSTTSSSCSSSSCHHHHSCC
T ss_pred             CCCCCCCCceECCC-CCEEecCccCCCCCCCCCCCccccch
Confidence            45679999999998 99999999999999999999998763

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.54  E-value=5.6e-15  Score=73.87  Aligned_cols=38  Identities=34%  Similarity=0.750  Sum_probs=35.1

Q ss_pred             CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      +..|+..+|+|.+ ++||+..|+|||+.||.|||||..|
T Consensus         3 ~~~C~~~~F~C~~-g~CI~~~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            3 PPQCQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CCBTTBTCEEETT-TEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CCcCCCCceEcCC-CCeEehhhccCCCCCCCCCCCCCCC
Confidence            4568889999999 9999999999999999999999876

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.53  E-value=3.6e-15  Score=74.97  Aligned_cols=40  Identities=38%  Similarity=0.789  Sum_probs=34.7

Q ss_pred             CCCCCCCceeeCC----CCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          26 TVSCAWSEFSCHD----RLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        26 ~~~C~~~~f~C~~----~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ...|++.+|+|.+    .++||+..|+|||+.||.|||||.+|.
T Consensus         4 ~~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~   47 (47)
T 1k7b_A            4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   47 (47)
T ss_dssp             --CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred             CCCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCCC
Confidence            3568899999983    389999999999999999999999884

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.48  E-value=1e-14  Score=73.65  Aligned_cols=39  Identities=44%  Similarity=0.969  Sum_probs=35.9

Q ss_pred             CCCCCCceeeCCCC-ceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537          27 VSCAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNCGK   66 (66)
Q Consensus        27 ~~C~~~~f~C~~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~   66 (66)
                      ..|...+|+|.+ + +||+..|+|||+.||.|||||.+|.+
T Consensus         5 ~~C~~~~F~C~~-g~~CI~~~~~CDG~~DC~DgSDE~~C~~   44 (48)
T 2i1p_A            5 LNCTSAQFKCAD-GSSCINSRYRCDGVYDCRDNSDEAGCPT   44 (48)
T ss_dssp             CCCCSSSEECSS-SSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred             CCCCCCeeECCC-CCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence            568889999999 7 89999999999999999999999863

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.48  E-value=2.8e-14  Score=72.70  Aligned_cols=38  Identities=39%  Similarity=0.684  Sum_probs=34.6

Q ss_pred             CCCCCCCceeeC-CCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          26 TVSCAWSEFSCH-DRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        26 ~~~C~~~~f~C~-~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      ...|++.+|+|. + ++||+..|+|||+.||.|||||..|
T Consensus         4 ~~~C~~~~F~C~~~-g~CI~~~~~CDG~~DC~DgSDE~~C   42 (50)
T 2knx_A            4 GKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIA   42 (50)
T ss_dssp             TCTTCTTEEEETTT-TEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred             CCCCCCCcEEcCCC-CeEcChhhcCCCCCCCCCCCccccc
Confidence            456999999996 6 9999999999999999999999876

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.46  E-value=8.3e-15  Score=73.59  Aligned_cols=39  Identities=36%  Similarity=0.827  Sum_probs=34.9

Q ss_pred             CCCCCCceeeCC----CCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          27 VSCAWSEFSCHD----RLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        27 ~~C~~~~f~C~~----~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ..|+..+|+|.+    .++||+..|+|||+.||.|||||.+|.
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~   45 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   45 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence            468899999983    389999999999999999999998874

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.45  E-value=2.8e-14  Score=70.84  Aligned_cols=37  Identities=41%  Similarity=0.933  Sum_probs=34.1

Q ss_pred             CCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        27 ~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      ..|++.+|+|.+ ++||+..|+|||+.||.|+|||..|
T Consensus         3 ~~C~~~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~~   39 (44)
T 1j8e_A            3 HSCSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSSCTTEEECTT-SCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CCCCCCceEeCC-CCeEecCcccCCCCCCCCCCCCCCc
Confidence            468899999998 9999999999999999999999753

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.45  E-value=1.3e-13  Score=76.29  Aligned_cols=59  Identities=25%  Similarity=0.494  Sum_probs=45.3

Q ss_pred             EEecCCCcccCCCCCCCC-CCCCCCCCCC-CceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537           4 IRLCLGCATSYVPPVTTP-AYYPTVSCAW-SEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus         4 ~~~~~g~~~~~~~~~~~~-~~~~~~~C~~-~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      .++|+|.....  ..+++ .-.....|.+ .+|+|.+ ++||+..|+|||+.||.|||||.+|.
T Consensus        21 ~~~CDg~~DC~--DgsDE~~~C~~~~C~~~~~f~C~~-g~CI~~~~~CDG~~DC~DgSDE~~C~   81 (82)
T 2fyj_A           21 SWTCDLDDDCG--DRSDESASCAYPTCFPLTQFTCNN-GRCININWRCDNDNDCGDNSDEAGCS   81 (82)
T ss_dssp             TSSSSCSSSSC--STTTTTSSCCCSSSCSSSEEECTT-SCEEETTCBSSSSBCCSSSSSCSCCC
T ss_pred             cccCCCcccCC--CccccccccccccCCCCCceECCC-CCeEcHHHccCCCCcCCCCccccCCC
Confidence            45777776643  33333 2234456854 8999998 99999999999999999999999986

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.40  E-value=3.4e-13  Score=74.52  Aligned_cols=39  Identities=38%  Similarity=0.845  Sum_probs=35.5

Q ss_pred             CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCC-CCCC
Q psy6537          26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDE-VNCG   65 (66)
Q Consensus        26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE-~~C~   65 (66)
                      ...|++.+|+|.+ |+||+..|+|||+.||.||||| .+|.
T Consensus         2 ~~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~~C~   41 (82)
T 2fyj_A            2 ARTCPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCA   41 (82)
T ss_dssp             CSSSCTTEEETTS-SCEEETTSSSSCSSSSCSTTTTTSSCC
T ss_pred             CCCCCCCceEeCC-CCEEeccccCCCcccCCCccccccccc
Confidence            3568999999998 9999999999999999999999 7774

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.38  E-value=3.9e-14  Score=78.14  Aligned_cols=59  Identities=27%  Similarity=0.557  Sum_probs=43.0

Q ss_pred             EEecCCCcccCCCCCCCCCCCCCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCC--CCCC
Q psy6537           4 IRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDE--VNCG   65 (66)
Q Consensus         4 ~~~~~g~~~~~~~~~~~~~~~~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE--~~C~   65 (66)
                      .++|+|.....  ..+++.-.....|++.+|+|.+ ++||+..|+|||+.||.|||||  .+|.
T Consensus        19 ~~~CDg~~DC~--DgSDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~dgsDE~~~~C~   79 (80)
T 2fcw_B           19 QFVCDSDRDCL--DGSDEASCPVLTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQRCR   79 (80)
T ss_dssp             GGTTSSSCCST--TCTTTTTHHHHHCCTTEEECTT-SCEEEGGGTTSSSCCSTTCGGGCGGGC-
T ss_pred             ecccCCcccCC--CcccccccccccCCceeeECCC-CCEEecccccCCCcCCCCCCCcCcccCC
Confidence            45666666532  3333332223468889999998 9999999999999999999999  7775

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.35  E-value=4.6e-13  Score=73.82  Aligned_cols=36  Identities=42%  Similarity=0.922  Sum_probs=34.1

Q ss_pred             CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      .|++.+|+|.+ |+||+..|+|||+.||.|||||.+|
T Consensus         2 ~C~~~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C   37 (80)
T 2fcw_B            2 TCSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDEASC   37 (80)
T ss_dssp             CCCTTEEECTT-SCEEEGGGTTSSSCCSTTCTTTTTH
T ss_pred             CCCCCccCCCC-CCEEeeecccCCcccCCCccccccc
Confidence            58899999998 9999999999999999999999886

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.35  E-value=2.3e-13  Score=75.12  Aligned_cols=39  Identities=38%  Similarity=0.657  Sum_probs=34.7

Q ss_pred             CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCC
Q psy6537          25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVN   63 (66)
Q Consensus        25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~   63 (66)
                      +...|++.+|+|.+++.||+..|+|||+.||.|||||..
T Consensus         5 ~~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~   43 (80)
T 2kny_A            5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI   43 (80)
T ss_dssp             SSCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSG
T ss_pred             CCCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCcccc
Confidence            346799999999854899999999999999999999984

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.15  E-value=1.8e-11  Score=78.06  Aligned_cols=40  Identities=35%  Similarity=0.651  Sum_probs=35.2

Q ss_pred             CCCCCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCC--CCC
Q psy6537          26 TVSCAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEV--NCG   65 (66)
Q Consensus        26 ~~~C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~--~C~   65 (66)
                      ...|++.+|+|.+ +|.||+..|+|||..||.|||||.  +|.
T Consensus        51 ~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~   93 (217)
T 2gtl_M           51 EHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS   93 (217)
T ss_dssp             CCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHC
T ss_pred             CCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCC
Confidence            4579999999964 589999999999999999999997  564

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.11  E-value=1.9e-11  Score=77.80  Aligned_cols=38  Identities=39%  Similarity=0.807  Sum_probs=34.8

Q ss_pred             CCCCCCceee--CCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          27 VSCAWSEFSC--HDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        27 ~~C~~~~f~C--~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ..|+.++|+|  .+ |+|||..|+|||..||.|||||.+|.
T Consensus        53 ~~C~~~~F~C~~~~-g~CIp~~~~CDG~~DC~DgSDE~~C~   92 (215)
T 2gtl_O           53 PSCDEHEHQCGGDD-PQCISKLFVCDGHNDCRNGEDEKDCT   92 (215)
T ss_dssp             CSSCTTEEECCSSS-CCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred             CCCCCcceeeCCCC-CcCccccccCCCCCcCCCcccccCCC
Confidence            3588899999  56 99999999999999999999999885

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.06  E-value=1.1e-10  Score=74.42  Aligned_cols=40  Identities=28%  Similarity=0.683  Sum_probs=34.7

Q ss_pred             CCCCCCCceeeC-CCCceecCCcCCCCCCCCCCCCCCC--CCC
Q psy6537          26 TVSCAWSEFSCH-DRLQCVPLSARCNGVSDCRDYSDEV--NCG   65 (66)
Q Consensus        26 ~~~C~~~~f~C~-~~g~Ci~~~~~CDg~~dC~dgsDE~--~C~   65 (66)
                      ...|+..+|+|. ++|+||+..|+|||..||.|||||.  +|.
T Consensus        50 ~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~   92 (220)
T 2gtl_N           50 GTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD   92 (220)
T ss_dssp             CCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGC
T ss_pred             CCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCC
Confidence            356889999995 2389999999999999999999996  774

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=99.00  E-value=2.9e-10  Score=79.67  Aligned_cols=36  Identities=47%  Similarity=0.917  Sum_probs=33.0

Q ss_pred             CCCCCCceeeC-CCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          27 VSCAWSEFSCH-DRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        27 ~~C~~~~f~C~-~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ..|  .+|+|. + |+||+..|+|||..||.|+|||.+|.
T Consensus        66 ~~c--~~f~C~~~-g~Ci~~~~~Cdg~~dC~d~sdE~~c~  102 (537)
T 3ojy_B           66 VRC--EGFVCAQT-GRCVNRRLLCNGDNDCGDQSDEANCR  102 (537)
T ss_dssp             SCC--SSEECTTT-CCEECGGGTTSSSCCSSSSCTTSSCS
T ss_pred             CCC--CccCcCCC-CcEeeccccCCCCCCCCCccccccCC
Confidence            445  799999 7 99999999999999999999999985

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.97  E-value=4.7e-10  Score=78.94  Aligned_cols=41  Identities=34%  Similarity=0.737  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCceeeC-CCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          23 YYPTVSCAWSEFSCH-DRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        23 ~~~~~~C~~~~f~C~-~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      |.....|+ .+|+|. + |+||+..|+|||..||.|+|||.+|.
T Consensus        60 c~~~~~c~-~~f~C~~~-g~Ci~~~~~Cdg~~dC~d~sDE~~C~  101 (554)
T 3ojy_A           60 CVRQAQCG-QDFQCKET-GRCLKRHLVCNGDQDCLDGSDEDDCE  101 (554)
T ss_dssp             C--CCCCS-SSEECSSS-CCEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred             CcccCCCC-CcCccCCC-CEEcccccccCCcccCCCccccccCC
Confidence            33345574 799999 7 99999999999999999999999986

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.96  E-value=6.5e-10  Score=79.05  Aligned_cols=40  Identities=40%  Similarity=0.861  Sum_probs=29.9

Q ss_pred             CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ....|...+|+|.+ ++||+..|+|||..||.|||||.+|.
T Consensus        84 ~~~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsDE~~C~  123 (699)
T 1n7d_A           84 PPKTCSQDEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCP  123 (699)
T ss_dssp             SSCCCCSSCCCSSC-C----CCCTTCSSCCSSSSCSSSSCC
T ss_pred             cccccccCcEEcCC-CCEecHHHcCCCcCcCCCCCccCCcC
Confidence            34568888899988 88999999999999999999998774

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.96  E-value=7.9e-10  Score=78.61  Aligned_cols=59  Identities=27%  Similarity=0.544  Sum_probs=45.4

Q ss_pred             EEecCCCcccCCCCCCCCCCCCCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCC--CCCC
Q psy6537           4 IRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDE--VNCG   65 (66)
Q Consensus         4 ~~~~~g~~~~~~~~~~~~~~~~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE--~~C~   65 (66)
                      .++|+|....  ...+++.-+....|++.+|+|.+ ++||+..|+|||+.||.|+|||  .+|.
T Consensus       104 ~~~Cdg~~dC--~dgsDE~~C~~~~C~~~~f~C~~-~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~  164 (699)
T 1n7d_A          104 QFVCDSDRDC--LDGSDEASCPVLTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQRCR  164 (699)
T ss_dssp             CCTTCSSCCS--SSSCSSSSCCCCCCCSSCCCCSS-SCCCCTTSTTCSSCCSSSSSSSSCSSSS
T ss_pred             HHcCCCcCcC--CCCCccCCcCccccCccccCCCC-CcccchhcccCCCCcCCCCcccccccCC
Confidence            4556666543  23334433455689999999988 9999999999999999999999  7774

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.85  E-value=2.7e-10  Score=82.47  Aligned_cols=60  Identities=30%  Similarity=0.568  Sum_probs=0.0

Q ss_pred             cEEecCCCcccCCCCCCCCCCCCCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537           3 YIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus         3 ~~~~~~g~~~~~~~~~~~~~~~~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ..++|+|....  ....++.-+....|+..+|+|.+ |+||+..|+|||..||.|+|||.+|.
T Consensus        82 ~~~~CDg~~dC--~dgsDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~CDg~~dC~dgsDE~~C~  141 (791)
T 3m0c_C           82 QFWRCDGQVDC--DNGSDEQGCPPKTCSQDEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCP  141 (791)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ccccCCCCcCc--CCCcccCCccCccccCCeEECCC-CCEECHHHcCCCcccCCCCccccccc
Confidence            34567766653  23333333344578888999988 89999999999999999999998874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.76  E-value=8.9e-10  Score=79.77  Aligned_cols=62  Identities=32%  Similarity=0.634  Sum_probs=0.0

Q ss_pred             ccEEecCCCcccCCCCCCCCCC--CCCCCCCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537           2 KYIRLCLGCATSYVPPVTTPAY--YPTVSCAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus         2 ~~~~~~~g~~~~~~~~~~~~~~--~~~~~C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ...++|+|.....  ..+++..  +....|.+.+|+|.+ .++||+..|+|||+.||.|+|||.+|.
T Consensus        38 ~~~~~CDg~~dC~--D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  102 (791)
T 3m0c_C           38 SYKWVCDGSAECQ--DGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCP  102 (791)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             ehhhcCCCCccCC--CCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCcccCCcc
Confidence            3567788877643  3333321  345679999999986 369999999999999999999999884

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=98.61  E-value=4.2e-08  Score=71.94  Aligned_cols=36  Identities=42%  Similarity=1.019  Sum_probs=32.6

Q ss_pred             CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      .|. ..|+|.+ |+||+..|+|||..||.|+|||.+|.
T Consensus       118 ~C~-~~F~C~~-g~ci~~~~~c~g~~dC~d~sde~~C~  153 (913)
T 3t5o_A          118 DCK-NKFRCDS-GRCIARKLECNGENDCGDNSDERDCG  153 (913)
T ss_dssp             CCS-SEEECTT-SCEEEGGGSSSSSCCSSSSGGGTTCS
T ss_pred             Ccc-cccccCC-CceEccceecCCcccCCCccccccCC
Confidence            353 6799998 99999999999999999999999986

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.54  E-value=3.7e-08  Score=68.95  Aligned_cols=37  Identities=30%  Similarity=0.675  Sum_probs=29.2

Q ss_pred             CCCCC-ceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWS-EFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        28 ~C~~~-~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      .|+.. +|+|.+ +.||+..++|||+.||.|+|||.+|.
T Consensus       202 ~c~~~~~~~C~~-~~ci~~~~~Cdg~~dC~d~sDE~~C~  239 (565)
T 2xrc_A          202 DSPMDDFFQCVN-GKYISQMKACDGINDCGDQSDELCCK  239 (565)
T ss_dssp             -------CBCTT-SCBCCTTSTTSSSCCSSSSSSSSSBS
T ss_pred             CCCCcCeeECCC-CCccCHHHcCCCcccCCCCccccccc
Confidence            44444 599998 99999999999999999999999884

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.50  E-value=1.2e-07  Score=66.37  Aligned_cols=58  Identities=28%  Similarity=0.592  Sum_probs=44.6

Q ss_pred             cEEecCCCcccCCCCCCCCCCCCCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537           3 YIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus         3 ~~~~~~g~~~~~~~~~~~~~~~~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ..++|+|....  +..+++..+..  |+..+|+|.+ +.||+..++|||..||.|++||.+|.
T Consensus       219 ~~~~Cdg~~dC--~d~sDE~~C~~--c~~~~~~C~~-~~C~~~~~~cdG~~dC~~gsDE~~C~  276 (565)
T 2xrc_A          219 QMKACDGINDC--GDQSDELCCKA--CQGKGFHCKS-GVCIPSQYQCNGEVDCITGEDEVGCA  276 (565)
T ss_dssp             TTSTTSSSCCS--SSSSSSSSBSS--CSSSCEEETT-TEEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred             HHHcCCCcccC--CCCcccccccc--cCCCceecCC-CcccCccccCCCcccCCCCccccCcC
Confidence            34567776653  33344433222  8888999998 89999999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	66
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-08
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	5e-08
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	1e-07
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-07
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	1e-07
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	2e-07
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-07
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	9e-07
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-06
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	1e-06
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	1e-06
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	1e-06
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	6e-05
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	6e-05
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	8e-05

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-08
 Identities = 17/37 (45%), Positives = 21/37 (56%)

Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C   EF C     C+PL  RC+G +DC D SDE +C
Sbjct: 3  GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 5e-08
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 26 TVSCAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNC 64
          +V+C   +FSC  R+ +C+P   RC+G  DC + SDE  C
Sbjct: 2  SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (97), Expect = 1e-07
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          +C+ +EF CHD  +C+     C+   DC D SDE +C
Sbjct: 2  TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASC 37

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (97), Expect = 1e-07
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          +C   EF C D   C+  S +C+   DC+D SDEV C
Sbjct: 2  TCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGC 37

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 41.0 bits (96), Expect = 1e-07
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 28 SCAWSEFSCHDRL----QCVPLSARCNGVSDCRDYSDEVNCG 65
          SC   +F C +      +C P    C+G  DC D  DE  CG
Sbjct: 1  SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 42

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 2e-07
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 29 CAWSEFSCHDR-LQCVPLSARCNGVSDCRDYSDEVNCG 65
          C   E SC     QC+P+S RC+G +DC    DE NCG
Sbjct: 1  CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 3e-07
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          + SC+ ++F C+   +C+P    C+G +DC DYSDE + 
Sbjct: 2  SHSCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHA 39

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 9e-07
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          C+  EF C    +C+  S RC+G  DC+D SDE NC
Sbjct: 2  CSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC 36

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 1e-06
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
              C   EF+C +  +C+    +C+G +DC D SDE   
Sbjct: 2  SPPQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA 40

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 1e-06
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          ++C  + F C+    C+P    C+   DC D SDE   
Sbjct: 1  LTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQ 37

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 38.6 bits (90), Expect = 1e-06
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 28 SCAWSEFSC-HDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          SC   E  C  D  QC+     C+G +DCR+  DE +C
Sbjct: 2  SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 1e-06
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
           C  +EF C D  +C+     C+G ++C+D SDE   
Sbjct: 7  RCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQE 42

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 6e-05
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
          T+    ++F CH   +C+ L   CN   DCRD+SDE   
Sbjct: 4  TLCEGPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPIK 41

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 34.1 bits (78), Expect = 6e-05
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 29 CAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNC 64
          C    F C     +C+     C+G  DC +  DE   
Sbjct: 2  CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.7 bits (77), Expect = 8e-05
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 29 CAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNC 64
          C   E  C   + +C+     C+G  DCRD SDE   
Sbjct: 3  CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.62
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.61
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.6
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.59
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.58
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.56
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.53
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.52
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.51
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.49
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.48
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.47
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.4
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.39
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.38

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.2e-16  Score=76.90  Aligned_cols=41  Identities=41%  Similarity=0.814  Sum_probs=37.1

Q ss_pred             CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537          26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK   66 (66)
Q Consensus        26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~   66 (66)
                      +..|+.++|+|.++++||+..|+|||+.||.|+|||.+|..
T Consensus         1 P~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C~~   41 (42)
T d1cr8a_           1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG   41 (42)
T ss_dssp             CCCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred             CCCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhccCCC
Confidence            35799999999765899999999999999999999999964

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.7e-16  Score=75.48  Aligned_cols=38  Identities=42%  Similarity=0.866  Sum_probs=35.9

Q ss_pred             CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK   66 (66)
Q Consensus        28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~   66 (66)
                      +|++.+|+|.+ ++||+..|+|||+.||.|+|||.+|.+
T Consensus         2 sC~~~~f~C~~-g~CI~~~~~CDg~~DC~DgsDE~~C~n   39 (39)
T d1f8za_           2 TCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVN   39 (39)
T ss_dssp             CCCTTEEECSS-SCEEETTTSSSCCCCSTTSGGGSSSCC
T ss_pred             CCCCCceEeCC-CCeEChhhcCCCCCcCCCCchhccCcC
Confidence            68999999999 999999999999999999999999964

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-16  Score=74.60  Aligned_cols=37  Identities=46%  Similarity=0.922  Sum_probs=34.8

Q ss_pred             CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      +|+..+|+|.+ ++||+..|+|||+.||.|+|||.+|.
T Consensus         1 PC~~~~f~C~~-g~Ci~~~~~CDg~~DC~dgsDE~~Cs   37 (37)
T d1ajja_           1 PCSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCCTTCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCCCCceEcCC-CCEECchhcCCCCCcCCCCchhhccC
Confidence            48899999998 99999999999999999999999984

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.8e-16  Score=75.44  Aligned_cols=37  Identities=41%  Similarity=0.882  Sum_probs=34.9

Q ss_pred             CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      .|+.++|+|.+ |+||+..|+|||..||.|||||.+|+
T Consensus         2 tC~~~~f~C~~-g~CI~~~~~CDg~~DC~DgsDE~~Cp   38 (39)
T d2fcwb1           2 TCSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCP   38 (39)
T ss_dssp             CCCTTEEECTT-SCEEEGGGTTSSSCCSTTCTTTTTHH
T ss_pred             cCCCCCEEcCC-CCEEcchhcCcCcCcCcCCchhcCCC
Confidence            58899999998 99999999999999999999999884

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.2e-16  Score=74.29  Aligned_cols=39  Identities=41%  Similarity=0.896  Sum_probs=34.7

Q ss_pred             CCCCCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          26 TVSCAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        26 ~~~C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      ...|++++|+|.+ +++||+..|+|||+.||.|||||.+|
T Consensus         2 s~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           2 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TTTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             ccccCCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            3579999999964 26899999999999999999999987

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-15  Score=74.13  Aligned_cols=40  Identities=33%  Similarity=0.688  Sum_probs=36.5

Q ss_pred             CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      ....|++++|+|.+ ++||+..|+|||+.||.|||||.+|.
T Consensus         4 ~~~~C~~~~f~C~~-g~CI~~~~~CDg~~DC~DgsDE~~c~   43 (44)
T d1f5ya1           4 VGDRCERNEFQCQD-GKCISYKWVCDGSAECQDGSDESQET   43 (44)
T ss_dssp             SCCCCCSSSEECSS-SCEECTTTTTSSSCSSSSSGGGTTSS
T ss_pred             CCCccCCCCeEcCC-CCeEChhHcCCCcCcCCCCCcCCCCc
Confidence            34679999999999 99999999999999999999999873

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-15  Score=72.54  Aligned_cols=38  Identities=47%  Similarity=1.015  Sum_probs=33.9

Q ss_pred             CCCCceeeCCC-CceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537          29 CAWSEFSCHDR-LQCVPLSARCNGVSDCRDYSDEVNCGK   66 (66)
Q Consensus        29 C~~~~f~C~~~-g~Ci~~~~~CDg~~dC~dgsDE~~C~~   66 (66)
                      |++++|+|.+. .+||+..|+|||+.||.|+|||.+|.+
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C~~   39 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN   39 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSCCC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhccCCC
Confidence            67889999872 369999999999999999999999974

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5e-15  Score=72.89  Aligned_cols=39  Identities=33%  Similarity=0.734  Sum_probs=35.5

Q ss_pred             CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      ++..|+.++|+|.+ ++||+..++|||+.||.|+|||..+
T Consensus         2 ~p~~C~~~~f~C~~-g~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           2 SPPQCQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CCCBTTBTCEEETT-TEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCcCCCCCeEcCC-CCeEChhhhCcCcCcCCCCCCCCcC
Confidence            35679999999998 9999999999999999999999754

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.51  E-value=1.7e-15  Score=73.35  Aligned_cols=38  Identities=37%  Similarity=0.764  Sum_probs=34.4

Q ss_pred             CCCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        28 ~C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      .|..++|+|.. .++||+..|+|||+.||.|+|||.+|.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C~   40 (41)
T d2gtlo2           2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT   40 (41)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred             CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccCc
Confidence            58899999963 279999999999999999999999985

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.9e-15  Score=72.59  Aligned_cols=37  Identities=41%  Similarity=0.933  Sum_probs=34.6

Q ss_pred             CCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        27 ~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      ..|+.++|+|.+ ++||+..++|||+.||.|+|||..|
T Consensus         3 ~~C~~~~f~C~~-g~CI~~~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           3 HSCSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSSCTTEEECTT-SCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             ccCCCCcEEcCC-CCEEChhhcCcCcccCCCCCcCCCC
Confidence            579999999998 9999999999999999999999865

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.48  E-value=7.3e-15  Score=71.33  Aligned_cols=38  Identities=39%  Similarity=0.865  Sum_probs=33.4

Q ss_pred             CCCCCceeeCCC----CceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDR----LQCVPLSARCNGVSDCRDYSDEVNCG   65 (66)
Q Consensus        28 ~C~~~~f~C~~~----g~Ci~~~~~CDg~~dC~dgsDE~~C~   65 (66)
                      +|++.+|+|.+.    ++|||..|+|||+.||.|+|||.+|+
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~CG   42 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   42 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhccC
Confidence            478899999652    47999999999999999999999985

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.1e-15  Score=70.02  Aligned_cols=36  Identities=33%  Similarity=0.703  Sum_probs=33.2

Q ss_pred             CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC   64 (66)
Q Consensus        28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C   64 (66)
                      +|++++|+|.+ |.||+..|+|||..||.|||||..+
T Consensus         2 tC~~~~f~C~~-g~CI~~~~~CDg~~DC~DgsDE~~~   37 (39)
T d2fcwb2           2 TCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQ   37 (39)
T ss_dssp             HCCTTEEECTT-SCEEEGGGTTSSSCCSTTCGGGCGG
T ss_pred             ccCCCceEcCC-CCeEChhhcCCCCCCCCCCCcCCCC
Confidence            48889999998 9999999999999999999999753

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.40  E-value=1e-13  Score=66.92  Aligned_cols=36  Identities=28%  Similarity=0.654  Sum_probs=32.0

Q ss_pred             CCCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEVN   63 (66)
Q Consensus        28 ~C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~~   63 (66)
                      .|++++|+|.+ +++||+..|+|||+.||.|||||..
T Consensus         1 ~C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           1 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            38899999963 3799999999999999999999964

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.5e-13  Score=66.42  Aligned_cols=34  Identities=44%  Similarity=0.938  Sum_probs=31.1

Q ss_pred             CCC-CCceeeCCCCceecCCcCCCCCCCCCCCCCCC
Q psy6537          28 SCA-WSEFSCHDRLQCVPLSARCNGVSDCRDYSDEV   62 (66)
Q Consensus        28 ~C~-~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~   62 (66)
                      .|. +.+|+|.+ |+||+..|+|||+.||.|+|||.
T Consensus         5 ~C~~~~~f~C~~-g~CI~~~~~CDg~~DC~DgsDE~   39 (44)
T d1xfea2           5 LCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEP   39 (44)
T ss_dssp             SCCSTTEEECTT-SCEEESTTTTCSSCCCSSCSSSC
T ss_pred             cCCCCCeEECCC-CCeEchhhcCCCCCCCCCCCccC
Confidence            454 68999999 99999999999999999999996

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.38  E-value=1.5e-13  Score=66.64  Aligned_cols=35  Identities=37%  Similarity=0.646  Sum_probs=31.6

Q ss_pred             CCCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCC
Q psy6537          28 SCAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEV   62 (66)
Q Consensus        28 ~C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~   62 (66)
                      .|+.++|+|.+ +++||+..|+|||+.||.|||||.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCC
Confidence            48899999974 368999999999999999999995