Psyllid ID: psy6621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MYDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFYH
Secondary Structure (PSIPRED)
ccccccccEEEccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEc
Coil and Loop (DISEMBL)
MYDCTEEELTCLGgvvvkthsgaecrlaginsiikgpvrvfqpmgwdafglpaenaahqhgidprewtvgnIATMKSQLqgfgckfnweselatcdpkyyKWTQALFLDLYHAGlvyrkevdysqnlptkfyh
Flexible Loop (DISEMBL)
MYDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKevdysqnlptkfyh
Low Complexity Region (SEG)
MYDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFYH
Disordered region (IsUnstruct)
******EELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYS*********
Disordered Region (DISOPRED)
***CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY*
Disordered Region (DISEMBL)
********LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFYH
Disordered Region (DISPRO)
*YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFYH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
B7JYA9	856	Leucine--tRNA ligase OS=C	yes	N/A	0.616	0.095	0.658	3e-27
Q5NMK1	846	Leucine--tRNA ligase OS=Z	yes	N/A	0.609	0.095	0.666	4e-27
Q7V1I2	858	Leucine--tRNA ligase OS=P	yes	N/A	0.609	0.094	0.641	5e-27
A3PCW8	856	Leucine--tRNA ligase OS=P	yes	N/A	0.609	0.094	0.641	1e-26
Q31AX4	856	Leucine--tRNA ligase OS=P	yes	N/A	0.609	0.094	0.641	1e-26
P73274	869	Leucine--tRNA ligase OS=S	N/A	N/A	0.616	0.094	0.609	2e-26
B0TBJ3	846	Leucine--tRNA ligase OS=H	yes	N/A	0.624	0.098	0.614	2e-26
A2BWL7	864	Leucine--tRNA ligase OS=P	yes	N/A	0.609	0.093	0.617	3e-26
A2BR45	856	Leucine--tRNA ligase OS=P	yes	N/A	0.609	0.094	0.629	3e-26
B1WSK6	853	Leucine--tRNA ligase OS=C	yes	N/A	0.616	0.096	0.634	4e-26

>sp|B7JYA9|SYL_CYAP8 Leucine--tRNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=leuS PE=3 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 60/82 (73%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
           RV  PMGWDAFGLPAENAA   GI P EWT  N++ MK QLQ  G   +WE E+ATC P+
Sbjct: 72  RVLHPMGWDAFGLPAENAAIDRGIPPAEWTYKNMSQMKQQLQTLGLSIDWEREVATCAPE 131

Query: 99  YYKWTQALFLDLYHAGLVYRKE 120
           YYKWTQ LFL LY AGL Y+KE
Sbjct: 132 YYKWTQWLFLQLYQAGLAYQKE 153

Cyanothece sp. (strain PCC 8801) (taxid: 41431)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 4

>sp|Q5NMK1|SYL_ZYMMO Leucine--tRNA ligase OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=leuS PE=3 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 61/81 (75%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFG+PAENAA +  I PREWT+ NIATM+ QL+  G   +W  ELATC+P Y
Sbjct: 78  VLHPMGWDAFGMPAENAAMERKIHPREWTMSNIATMREQLKRIGFAIDWSRELATCEPSY 137

Query: 100 YKWTQALFLDLYHAGLVYRKE 120
           Y   QALFLDLY AGLVYRKE
Sbjct: 138 YGQEQALFLDLYKAGLVYRKE 158

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q7V1I2|SYL_PROMP Leucine--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=leuS PE=3 SV=1

 Score =  119 bits (299), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 61/81 (75%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA + GI+P +WT  NIA MKSQL+  G   +W+ E ATCD  Y
Sbjct: 84  VLHPMGWDAFGLPAENAAIERGINPDKWTKQNIAHMKSQLKLLGLSVDWDREFATCDENY 143

Query: 100 YKWTQALFLDLYHAGLVYRKE 120
           Y WTQ LFL+L+ AGLVY+KE
Sbjct: 144 YVWTQFLFLELHKAGLVYQKE 164

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A3PCW8|SYL_PROM0 Leucine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9301) GN=leuS PE=3 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 59/81 (72%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA + GI P  WT  NI+ MKSQL+  G   +W+ E ATCD  Y
Sbjct: 84  VLHPMGWDAFGLPAENAAIERGISPSVWTKKNISHMKSQLKLLGLSVDWDREFATCDENY 143

Query: 100 YKWTQALFLDLYHAGLVYRKE 120
           Y WTQ LFL+LY AGLVY+KE
Sbjct: 144 YVWTQYLFLELYKAGLVYQKE 164

Prochlorococcus marinus (strain MIT 9301) (taxid: 167546)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q31AX4|SYL_PROM9 Leucine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9312) GN=leuS PE=3 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 59/81 (72%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA + GI P  WT  NI+ MKSQL+  G   +W+ E ATCD  Y
Sbjct: 84  VLHPMGWDAFGLPAENAAIERGISPSVWTKKNISHMKSQLKLLGLSVDWDREFATCDENY 143

Query: 100 YKWTQALFLDLYHAGLVYRKE 120
           Y WTQ LFL+LY AGLVY+KE
Sbjct: 144 YIWTQYLFLELYKAGLVYQKE 164

Prochlorococcus marinus (strain MIT 9312) (taxid: 74546)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|P73274|SYL_SYNY3 Leucine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=leuS PE=3 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 62/82 (75%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
           +V  PMGWDAFGLPAENAA + GI P++WT  NIA M++QLQ  G   +WE E+ATC P 
Sbjct: 72  QVLHPMGWDAFGLPAENAAIERGIPPKQWTEKNIAQMRAQLQQLGLSIDWEREVATCAPD 131

Query: 99  YYKWTQALFLDLYHAGLVYRKE 120
           YY+WTQ LFL+ + AGL Y+KE
Sbjct: 132 YYRWTQWLFLEFFQAGLAYQKE 153

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|B0TBJ3|SYL_HELMI Leucine--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuS PE=3 SV=1

 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 61/83 (73%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA +H + P +WT  NIA M+ QLQ  G  ++WE E+ATC P Y
Sbjct: 73  VLHPMGWDAFGLPAENAAIKHKVPPADWTWSNIANMRRQLQSMGISYDWEREVATCHPDY 132

Query: 100 YKWTQALFLDLYHAGLVYRKEVD 122
           YKWTQ LFL LY AGL Y+K+ +
Sbjct: 133 YKWTQWLFLQLYKAGLAYKKKAN 155

Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) (taxid: 498761)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A2BWL7|SYL_PROM5 Leucine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9515) GN=leuS PE=3 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 61/81 (75%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           +  PMGWDAFGLPAENAA + GI+P +WT  NIA MKSQL+  G   +W+ E ATCD  Y
Sbjct: 88  LLHPMGWDAFGLPAENAAIERGINPNDWTKKNIAHMKSQLKLLGLSVDWDKEFATCDENY 147

Query: 100 YKWTQALFLDLYHAGLVYRKE 120
           Y WTQ LFL+L+ +GLVY+KE
Sbjct: 148 YLWTQFLFLELHKSGLVYQKE 168

Prochlorococcus marinus (strain MIT 9515) (taxid: 167542)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A2BR45|SYL_PROMS Leucine--tRNA ligase OS=Prochlorococcus marinus (strain AS9601) GN=leuS PE=3 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 59/81 (72%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA + GI P  WT  NI+ MKSQL+  G   +W+ E ATCD  Y
Sbjct: 84  VLHPMGWDAFGLPAENAAIERGISPSVWTKKNISHMKSQLKLLGLSVDWDREFATCDENY 143

Query: 100 YKWTQALFLDLYHAGLVYRKE 120
           Y WTQ LFL+LY +GLVY+KE
Sbjct: 144 YIWTQYLFLELYKSGLVYQKE 164

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|B1WSK6|SYL_CYAA5 Leucine--tRNA ligase OS=Cyanothece sp. (strain ATCC 51142) GN=leuS PE=3 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 57/82 (69%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
           RV  PMGWDAFGLPAENAA    I P +WT  NIA MK QLQ  G   +W+ E+ATC P 
Sbjct: 72  RVLHPMGWDAFGLPAENAAIDRNIPPADWTYKNIAQMKQQLQTLGLSIDWDREVATCSPD 131

Query: 99  YYKWTQALFLDLYHAGLVYRKE 120
           YYKWTQ LFL  Y AGL Y+KE
Sbjct: 132 YYKWTQWLFLQFYQAGLAYQKE 153

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
195491875	869	GE21469 [Drosophila yakuba] gi|194179852	0.616	0.094	0.646	4e-26
91078378	866	PREDICTED: similar to Leucyl-tRNA synthe	0.781	0.120	0.559	4e-26
195428976	877	GK16600 [Drosophila willistoni] gi|19415	0.759	0.115	0.535	6e-26
195587864	869	GD13863 [Drosophila simulans] gi|1941956	0.616	0.094	0.646	6e-26
194866776	870	GG15248 [Drosophila erecta] gi|190653726	0.616	0.094	0.646	6e-26
21355409	869	Leucyl-tRNA synthetase [Drosophila melan	0.616	0.094	0.646	6e-26
328702417	872	PREDICTED: probable leucyl-tRNA syntheta	0.624	0.095	0.638	9e-26
195337561	869	GM14681 [Drosophila sechellia] gi|194128	0.616	0.094	0.646	9e-26
427712401	856	leucyl-tRNA synthetase [Synechococcus sp	0.616	0.095	0.646	2e-25
257060679	856	leucyl-tRNA synthetase [Cyanothece sp. P	0.616	0.095	0.658	2e-25

>gi|195491875|ref|XP_002093751.1| GE21469 [Drosophila yakuba] gi|194179852|gb|EDW93463.1| GE21469 [Drosophila yakuba]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 62/82 (75%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           VFQPMGWD+FGLPAENAA+Q G++P  WT  NI+ MK QLQ  GC F+W  EL+TC PKY
Sbjct: 102 VFQPMGWDSFGLPAENAANQRGVEPASWTKQNISQMKEQLQRLGCSFDWNHELSTCSPKY 161

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           YKWTQ LFL L+  GL Y+ E 
Sbjct: 162 YKWTQHLFLMLHRHGLAYQNEA 183

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078378|ref|XP_974191.1| PREDICTED: similar to Leucyl-tRNA synthetase CG7479-PA [Tribolium castaneum] gi|270003885|gb|EFA00333.1| hypothetical protein TcasGA2_TC003172 [Tribolium castaneum]

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 71/109 (65%), Gaps = 5/109 (4%)

Query: 12  LGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGN 71
           +G V V T S    R   +N        V  P+GWDAFGLPAENAA +  I P++WT  N
Sbjct: 79  MGHVRVYTISDVIARFQRMNG-----KNVIHPIGWDAFGLPAENAAIERQIAPQDWTQSN 133

Query: 72  IATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 120
           I+ MKSQLQ  GC F W  ELATCDP YYKWTQ LFL LY +GLVY+K+
Sbjct: 134 ISHMKSQLQRLGCSFEWGRELATCDPSYYKWTQDLFLKLYDSGLVYQKK 182

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428976|ref|XP_002062540.1| GK16600 [Drosophila willistoni] gi|194158625|gb|EDW73526.1| GK16600 [Drosophila willistoni]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 74/112 (66%), Gaps = 11/112 (9%)

Query: 12  LGGVVVKTHSGAECR---LAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWT 68
           +G V V T S A  R   + G N        VFQP+GWD+FGLPAENAA+Q G++P +WT
Sbjct: 79  MGHVRVYTISDAVARFHRMCGKN--------VFQPIGWDSFGLPAENAANQRGVEPSQWT 130

Query: 69  VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 120
             NI+ MK QL+  GC F+W  EL+TC PKYYKWTQ LFL L+  GL Y+ E
Sbjct: 131 DQNISQMKQQLERLGCSFDWSHELSTCSPKYYKWTQKLFLMLHQQGLAYQNE 182

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587864|ref|XP_002083681.1| GD13863 [Drosophila simulans] gi|194195690|gb|EDX09266.1| GD13863 [Drosophila simulans]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 62/82 (75%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           VFQPMGWD+FGLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL+TC PKY
Sbjct: 102 VFQPMGWDSFGLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELSTCSPKY 161

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           YKWTQ LFL L+  GL Y+ E 
Sbjct: 162 YKWTQHLFLMLHRHGLAYQNEA 183

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194866776|ref|XP_001971943.1| GG15248 [Drosophila erecta] gi|190653726|gb|EDV50969.1| GG15248 [Drosophila erecta]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 62/82 (75%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           VFQPMGWD+FGLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL+TC PKY
Sbjct: 102 VFQPMGWDSFGLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELSTCSPKY 161

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           YKWTQ LFL L+  GL Y+ E 
Sbjct: 162 YKWTQHLFLMLHRHGLAYQNEA 183

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21355409|ref|NP_647932.1| Leucyl-tRNA synthetase [Drosophila melanogaster] gi|7292541|gb|AAF47943.1| Leucyl-tRNA synthetase [Drosophila melanogaster] gi|19528361|gb|AAL90295.1| LD44376p [Drosophila melanogaster]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 62/82 (75%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           VFQPMGWD+FGLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL+TC PKY
Sbjct: 102 VFQPMGWDSFGLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELSTCSPKY 161

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           YKWTQ LFL L+  GL Y+ E 
Sbjct: 162 YKWTQHLFLMLHRHGLAYQNEA 183

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702417|ref|XP_003241894.1| PREDICTED: probable leucyl-tRNA synthetase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 61/83 (73%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           VFQPMGWDAFGLPAENAA  HG+   +WT  NI  MK QLQ  GC F+W +EL TCDP Y
Sbjct: 103 VFQPMGWDAFGLPAENAAILHGLPADKWTSSNIDHMKKQLQELGCSFDWSNELTTCDPTY 162

Query: 100 YKWTQALFLDLYHAGLVYRKEVD 122
           YKWTQ  FL ++ +GLVY KE +
Sbjct: 163 YKWTQWFFLKMFQSGLVYSKEAE 185

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337561|ref|XP_002035397.1| GM14681 [Drosophila sechellia] gi|194128490|gb|EDW50533.1| GM14681 [Drosophila sechellia]

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 61/82 (74%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           VFQPMGWD+FGLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL TC PKY
Sbjct: 102 VFQPMGWDSFGLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELTTCSPKY 161

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           YKWTQ LFL L+  GL Y+ E 
Sbjct: 162 YKWTQHLFLMLHRHGLAYQNEA 183

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427712401|ref|YP_007061025.1| leucyl-tRNA synthetase [Synechococcus sp. PCC 6312] gi|427376530|gb|AFY60482.1| leucyl-tRNA synthetase [Synechococcus sp. PCC 6312]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 60/82 (73%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
           RV  PMGWDAFGLPAENAA + GI P EWT  NIA MK+QLQ  G  ++W  ELATC P 
Sbjct: 72  RVLHPMGWDAFGLPAENAAIERGIPPAEWTEANIAQMKTQLQPLGLSYDWSRELATCRPD 131

Query: 99  YYKWTQALFLDLYHAGLVYRKE 120
           YY+WTQ LFL  + AGL Y+KE
Sbjct: 132 YYRWTQWLFLQFFQAGLAYQKE 153

Source: Synechococcus sp. PCC 6312

Species: Synechococcus sp. PCC 6312

Genus: Synechococcus

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|257060679|ref|YP_003138567.1| leucyl-tRNA synthetase [Cyanothece sp. PCC 8802] gi|256590845|gb|ACV01732.1| leucyl-tRNA synthetase [Cyanothece sp. PCC 8802]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 60/82 (73%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
           RV  PMGWDAFGLPAENAA   GI P EWT  N++ MK QLQ  G   +WE E+ATC P+
Sbjct: 72  RVLHPMGWDAFGLPAENAAIDRGIPPAEWTYKNMSQMKQQLQTLGLSIDWEREVATCAPE 131

Query: 99  YYKWTQALFLDLYHAGLVYRKE 120
           YYKWTQ LFL LY AGL Y+KE
Sbjct: 132 YYKWTQWLFLQLYQAGLAYQKE 153

Source: Cyanothece sp. PCC 8802

Species: Cyanothece sp. PCC 8802

Genus: Cyanothece

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
FB|FBgn0027085	869	Aats-leu "Leucyl-tRNA syntheta	0.609	0.093	0.654	2.9e-26
UNIPROTKB|E1BXI7	906	LARS2 "Uncharacterized protein	0.624	0.091	0.578	9.3e-24
UNIPROTKB|I3LLA2	203	LOC100738466 "Uncharacterized	0.631	0.413	0.559	1.8e-23
ZFIN|ZDB-GENE-070928-3	891	lars2 "leucyl-tRNA synthetase	0.616	0.092	0.573	1.9e-23
TIGR_CMR|ECH_0794	829	ECH_0794 "leucyl-tRNA syntheta	0.624	0.100	0.578	7.3e-23
ASPGD|ASPL0000008770	990	AN6526 [Emericella nidulans (t	0.631	0.084	0.581	1.6e-22
TIGR_CMR|CHY_0393	821	CHY_0393 "leucyl-tRNA syntheta	0.609	0.098	0.573	1.9e-22
TIGR_CMR|GSU_2209	824	GSU_2209 "leucyl-tRNA syntheta	0.601	0.097	0.587	1.9e-22
UNIPROTKB|F1MGP9	616	LARS2 "Uncharacterized protein	0.624	0.134	0.566	2.2e-22
SGD|S000004374	894	NAM2 "Mitochondrial leucyl-tRN	0.654	0.097	0.568	2.2e-22

FB|FBgn0027085 Aats-leu "Leucyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 307 (113.1 bits), Expect = 2.9e-26, P = 2.9e-26
 Identities = 53/81 (65%), Positives = 62/81 (76%)

Query:    40 VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
             VFQPMGWD+FGLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL+TC PKY
Sbjct:   102 VFQPMGWDSFGLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELSTCSPKY 161

Query:   100 YKWTQALFLDLYHAGLVYRKE 120
             YKWTQ LFL L+  GL Y+ E
Sbjct:   162 YKWTQHLFLMLHRHGLAYQNE 182

GO:0006429 "leucyl-tRNA aminoacylation" evidence=ISS;NAS

GO:0004823 "leucine-tRNA ligase activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|E1BXI7 LARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 284 (105.0 bits), Expect = 9.3e-24, P = 9.3e-24
 Identities = 48/83 (57%), Positives = 59/83 (71%)

Query:    38 VRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDP 97
             ++V  PMGWDAFGLPAENAA +HG+ P  WT  NI  M+ Q    G  F WE E+ TC P
Sbjct:   120 MQVLNPMGWDAFGLPAENAAIEHGLHPASWTQSNIQHMREQFDALGLSFTWEREITTCLP 179

Query:    98 KYYKWTQALFLDLYHAGLVYRKE 120
             +YYKWTQ LFL L+ +G+VY+KE
Sbjct:   180 EYYKWTQYLFLKLFESGMVYQKE 202

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|I3LLA2 LOC100738466 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query:    38 VRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDP 97
             ++V  PMGWDAFGLPAENAA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P
Sbjct:   119 MQVINPMGWDAFGLPAENAAIERNLHPESWTQSNIRHMRKQLDRLGLCFSWDREITTCLP 178

Query:    98 KYYKWTQALFLDLYHAGLVYRKEV 121
              YY+WTQ LF+ LY AGL Y+KEV
Sbjct:   179 DYYRWTQYLFIKLYEAGLAYQKEV 202

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

ZFIN|ZDB-GENE-070928-3 lars2 "leucyl-tRNA synthetase 2, mitochondrial" [Danio rerio (taxid:7955)]

 Score = 281 (104.0 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 47/82 (57%), Positives = 60/82 (73%)

Query:    39 RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
             +V  PMGWDAFGLPAENAA +  +DP +WT  NI +M++QL   G  FNW+ E+ TC P 
Sbjct:   108 QVLNPMGWDAFGLPAENAAIERNLDPEDWTRSNIESMRTQLDSLGLCFNWDREITTCLPD 167

Query:    99 YYKWTQALFLDLYHAGLVYRKE 120
             YYKWTQ LF+ ++ AGL Y+KE
Sbjct:   168 YYKWTQYLFIKMFEAGLAYQKE 189

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

TIGR_CMR|ECH_0794 ECH_0794 "leucyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 275 (101.9 bits), Expect = 7.3e-23, P = 7.3e-23
 Identities = 48/83 (57%), Positives = 57/83 (68%)

Query:    38 VRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDP 97
             + VF P+GWDAFGLPAENAA  + I+P  WT  NI  M+ QL+  G  ++W+ ELATCDP
Sbjct:    63 INVFHPIGWDAFGLPAENAALSYNINPHTWTESNIDNMRCQLKSIGLSYDWDKELATCDP 122

Query:    98 KYYKWTQALFLDLYHAGLVYRKE 120
              YYK  QA FLD    GL YRKE
Sbjct:   123 SYYKHEQAFFLDFLKCGLAYRKE 145

GO:0004823 "leucine-tRNA ligase activity" evidence=ISS

GO:0006429 "leucyl-tRNA aminoacylation" evidence=ISS

ASPGD|ASPL0000008770 AN6526 [Emericella nidulans (taxid:162425)]

 Score = 273 (101.2 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/86 (58%), Positives = 59/86 (68%)

Query:    40 VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
             V  PMGWDAFGLPAENAA QHG+ P  WT  NIA MK QL+     FNWE E ATC P++
Sbjct:   128 VLHPMGWDAFGLPAENAAIQHGVSPAGWTTENIAKMKEQLRSISTSFNWEREFATCSPEF 187

Query:   100 YKWTQALFLDLYHAGLVYRKE--VDY 123
             Y+ TQ +FL LY  GL Y+ +  V+Y
Sbjct:   188 YEHTQRIFLMLYEKGLAYQADAMVNY 213

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0000372 "Group I intron splicing" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

TIGR_CMR|CHY_0393 CHY_0393 "leucyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 271 (100.5 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 47/82 (57%), Positives = 59/82 (71%)

Query:    40 VFQPMGWDAFGLPAENAAHQHG-IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
             V  PMGWDAFGLPAENAA +HG + P +WT  NIA M+ QL+  G  ++W  E+ATC P+
Sbjct:    73 VLHPMGWDAFGLPAENAAIKHGNVHPADWTWDNIANMRRQLKELGISYDWRREIATCHPE 132

Query:    99 YYKWTQALFLDLYHAGLVYRKE 120
             YY+WTQ LFL  Y  GL Y+K+
Sbjct:   133 YYRWTQWLFLQFYKKGLAYKKK 154

GO:0004823 "leucine-tRNA ligase activity" evidence=ISS

GO:0006429 "leucyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|GSU_2209 GSU_2209 "leucyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 271 (100.5 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 47/80 (58%), Positives = 58/80 (72%)

Query:    40 VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
             V  PMGWDAFG+PAENAA +HG  P +WT  NI  M+SQL+  G  ++W  ELATCD  Y
Sbjct:    73 VLHPMGWDAFGMPAENAAIKHGSHPAKWTYENIDYMRSQLKKMGLSYDWGRELATCDVDY 132

Query:   100 YKWTQALFLDLYHAGLVYRK 119
             YKW Q +FL++Y  GLVY+K
Sbjct:   133 YKWEQKMFLEMYEKGLVYKK 152

GO:0004823 "leucine-tRNA ligase activity" evidence=ISS

GO:0006429 "leucyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|F1MGP9 LARS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 47/83 (56%), Positives = 57/83 (68%)

Query:    38 VRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDP 97
             ++V  PMGWDAFGLPAENAA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P
Sbjct:   120 MQVINPMGWDAFGLPAENAAIERNLHPESWTQSNIRHMRKQLDQLGLCFSWDREVTTCLP 179

Query:    98 KYYKWTQALFLDLYHAGLVYRKE 120
              YYKWTQ LF+ LY AGL Y+KE
Sbjct:   180 DYYKWTQYLFIKLYEAGLAYQKE 202

GO:0005524 "ATP binding" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

SGD|S000004374 NAM2 "Mitochondrial leucyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 271 (100.5 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 50/88 (56%), Positives = 61/88 (69%)

Query:    35 KGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELAT 94
             KG   V  PMGWDAFGLPAENAA +  I+P  WT  NIA MK Q+Q     F+W+ E+ T
Sbjct:    83 KG-YNVIHPMGWDAFGLPAENAAIERSINPAIWTRDNIAKMKQQMQSMLANFDWDREITT 141

Query:    95 CDPKYYKWTQALFLDLYHAGLVYRKEVD 122
             CDP+YYK+TQ +FL L+  GL YRKE +
Sbjct:   142 CDPEYYKFTQWIFLKLFENGLAYRKEAE 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0006450 "regulation of translational fidelity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA;IDA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0000372 "Group I intron splicing" evidence=IMP

GO:0003729 "mRNA binding" evidence=IPI

GO:0032543 "mitochondrial translation" evidence=IGI

GO:0005759 "mitochondrial matrix" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3M3A3	SYL_ANAVT	6, ., 1, ., 1, ., 4	0.5975	0.6165	0.0940	yes	N/A
Q0SV78	SYL_CLOPS	6, ., 1, ., 1, ., 4	0.6296	0.6090	0.0992	yes	N/A
Q8XML8	SYL_CLOPE	6, ., 1, ., 1, ., 4	0.6296	0.6090	0.0992	yes	N/A
Q0AG57	SYL_NITEC	6, ., 1, ., 1, ., 4	0.6125	0.6015	0.0921	yes	N/A
B0TBJ3	SYL_HELMI	6, ., 1, ., 1, ., 4	0.6144	0.6240	0.0981	yes	N/A
A1WCP8	SYL_ACISJ	6, ., 1, ., 1, ., 4	0.5046	0.7593	0.1109	yes	N/A
Q2G3C3	SYL_NOVAD	6, ., 1, ., 1, ., 4	0.6296	0.6090	0.0955	yes	N/A
A6M268	SYL_CLOB8	6, ., 1, ., 1, ., 4	0.6296	0.6090	0.0992	yes	N/A
Q0TTD0	SYL_CLOP1	6, ., 1, ., 1, ., 4	0.6296	0.6090	0.0992	yes	N/A
Q2JHX0	SYL_SYNJB	6, ., 1, ., 1, ., 4	0.6172	0.6090	0.0918	yes	N/A
A5D416	SYL_PELTS	6, ., 1, ., 1, ., 4	0.5853	0.6090	0.0979	yes	N/A
B7JYA9	SYL_CYAP8	6, ., 1, ., 1, ., 4	0.6585	0.6165	0.0957	yes	N/A
B0C1R1	SYL_ACAM1	6, ., 1, ., 1, ., 4	0.5975	0.6165	0.0959	yes	N/A
B2J7T9	SYL_NOSP7	6, ., 1, ., 1, ., 4	0.6097	0.6165	0.0941	yes	N/A
Q31LW9	SYL_SYNE7	6, ., 1, ., 1, ., 4	0.5609	0.6165	0.0947	yes	N/A
A4XKG9	SYL_CALS8	6, ., 1, ., 1, ., 4	0.5744	0.6466	0.1052	yes	N/A
Q7V1I2	SYL_PROMP	6, ., 1, ., 1, ., 4	0.6419	0.6090	0.0944	yes	N/A
A5GT82	SYL_SYNR3	6, ., 1, ., 1, ., 4	0.5975	0.6165	0.0949	yes	N/A
B1I5R7	SYL_DESAP	6, ., 1, ., 1, ., 4	0.6075	0.5939	0.0956	yes	N/A
Q820M7	SYL_NITEU	6, ., 1, ., 1, ., 4	0.6125	0.6015	0.0920	yes	N/A
A2BR45	SYL_PROMS	6, ., 1, ., 1, ., 4	0.6296	0.6090	0.0946	yes	N/A
Q5NMK1	SYL_ZYMMO	6, ., 1, ., 1, ., 4	0.6666	0.6090	0.0957	yes	N/A
A6WDL7	SYL_KINRD	6, ., 1, ., 1, ., 4	0.5555	0.6090	0.0947	yes	N/A
A5CR89	SYL_CLAM3	6, ., 1, ., 1, ., 4	0.5679	0.6090	0.0951	yes	N/A
B1WSK6	SYL_CYAA5	6, ., 1, ., 1, ., 4	0.6341	0.6165	0.0961	yes	N/A
Q8DH61	SYL_THEEB	6, ., 1, ., 1, ., 4	0.5975	0.6165	0.0956	yes	N/A
A5G068	SYL_ACICJ	6, ., 1, ., 1, ., 4	0.5925	0.6090	0.0937	yes	N/A
Q97LB6	SYL_CLOAB	6, ., 1, ., 1, ., 4	0.6172	0.6090	0.0997	yes	N/A
B0RDA6	SYL_CLAMS	6, ., 1, ., 1, ., 4	0.5679	0.6090	0.0950	yes	N/A
Q2GG41	SYL_EHRCR	6, ., 1, ., 1, ., 4	0.5783	0.6240	0.1001	yes	N/A
Q2JV13	SYL_SYNJA	6, ., 1, ., 1, ., 4	0.6172	0.6090	0.0927	yes	N/A
B7KCI7	SYL_CYAP7	6, ., 1, ., 1, ., 4	0.5975	0.6165	0.0960	yes	N/A
A1WYZ7	SYL_HALHL	6, ., 1, ., 1, ., 4	0.6202	0.5939	0.0966	yes	N/A
B8HM05	SYL_CYAP4	6, ., 1, ., 1, ., 4	0.5975	0.6165	0.0955	yes	N/A
A2BWL7	SYL_PROM5	6, ., 1, ., 1, ., 4	0.6172	0.6090	0.0937	yes	N/A
B1XP90	SYL_SYNP2	6, ., 1, ., 1, ., 4	0.6219	0.6165	0.0962	yes	N/A
A6TQK3	SYL_ALKMQ	6, ., 1, ., 1, ., 4	0.5925	0.6090	0.0983	yes	N/A
Q114V5	SYL_TRIEI	6, ., 1, ., 1, ., 4	0.5975	0.6165	0.0882	yes	N/A
Q2RKZ1	SYL_MOOTA	6, ., 1, ., 1, ., 4	0.6049	0.6090	0.0977	yes	N/A
A3PCW8	SYL_PROM0	6, ., 1, ., 1, ., 4	0.6419	0.6090	0.0946	yes	N/A
A7FPP5	SYL_CLOB1	6, ., 1, ., 1, ., 4	0.6172	0.6090	0.0996	yes	N/A
A5VA89	SYL_SPHWW	6, ., 1, ., 1, ., 4	0.6172	0.6090	0.0970	yes	N/A
A8G4T7	SYL_PROM2	6, ., 1, ., 1, ., 4	0.6296	0.6090	0.0946	yes	N/A
Q0ABN3	SYL_ALHEH	6, ., 1, ., 1, ., 4	0.625	0.6015	0.0925	yes	N/A
Q31AX4	SYL_PROM9	6, ., 1, ., 1, ., 4	0.6419	0.6090	0.0946	yes	N/A
A5HY79	SYL_CLOBH	6, ., 1, ., 1, ., 4	0.6172	0.6090	0.0996	yes	N/A
A7G9T9	SYL_CLOBL	6, ., 1, ., 1, ., 4	0.6172	0.6090	0.0996	yes	N/A
Q8YS09	SYL_NOSS1	6, ., 1, ., 1, ., 4	0.5975	0.6165	0.0940	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
PRK00390	805	PRK00390, leuS, leucyl-tRNA synthetase; Validated	4e-48
TIGR00396	842	TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba	4e-40
COG0495	814	COG0495, LeuS, Leucyl-tRNA synthetase [Translation	2e-38
cd00812	314	cd00812, LeuRS_core, catalytic core domain of leuc	3e-38
PLN02563	963	PLN02563, PLN02563, aminoacyl-tRNA ligase	3e-30
PRK13208	800	PRK13208, valS, valyl-tRNA synthetase; Reviewed	1e-17
cd00817	382	cd00817, ValRS_core, catalytic core domain of valy	7e-14
cd00668	312	cd00668, Ile_Leu_Val_MetRS_core, catalytic core do	2e-13
COG0525	877	COG0525, ValS, Valyl-tRNA synthetase [Translation,	2e-13
TIGR00422	861	TIGR00422, valS, valyl-tRNA synthetase	6e-11
COG0143	558	COG0143, MetG, Methionyl-tRNA synthetase [Translat	4e-06
cd00814	319	cd00814, MetRS_core, catalytic core domain of meth	7e-06
pfam09334	388	pfam09334, tRNA-synt_1g, tRNA synthetases class I	1e-04
TIGR00398	530	TIGR00398, metG, methionyl-tRNA synthetase	1e-04
pfam00133	606	pfam00133, tRNA-synt_1, tRNA synthetases class I (	3e-04
PRK00133	673	PRK00133, metG, methionyl-tRNA synthetase; Reviewe	8e-04
PRK12268	556	PRK12268, PRK12268, methionyl-tRNA synthetase; Rev	0.001
PRK11893	511	PRK11893, PRK11893, methionyl-tRNA synthetase; Rev	0.001
TIGR00392	861	TIGR00392, ileS, isoleucyl-tRNA synthetase	0.001

>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated

 Score =  164 bits (417), Expect = 4e-48
 Identities = 52/82 (63%), Positives = 59/82 (71%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA + G  P EWT  NIA MK QL+  G  ++W  E+ATCDP+Y
Sbjct: 72  VLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEY 131

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           YKWTQ +FL LY  GL YRKE 
Sbjct: 132 YKWTQWIFLKLYEKGLAYRKES 153

Length = 805

>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family

 Score =  141 bits (357), Expect = 4e-40
 Identities = 51/83 (61%), Positives = 62/83 (74%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  P+GWDAFGLPAENAA + GI P +WT  NIA MK QLQ  G  ++W+ E+ATCDP+Y
Sbjct: 69  VLHPIGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEY 128

Query: 100 YKWTQALFLDLYHAGLVYRKEVD 122
           YKWTQ +FL+L+  GL Y KE D
Sbjct: 129 YKWTQWIFLELFEKGLAYVKEAD 151

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842

>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  136 bits (345), Expect = 2e-38
 Identities = 53/93 (56%), Positives = 60/93 (64%), Gaps = 2/93 (2%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
            V  PMGWDAFGLPAENAA + G DP +WT  NIA MK QL+  G   +W  E ATCDP+
Sbjct: 73  NVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPE 132

Query: 99  YYKWTQALFLDLYHAGLVYRKE--VDYSQNLPT 129
           YYKW Q  FL LY  GL YRKE  V++     T
Sbjct: 133 YYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGT 165

Length = 814

>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases

 Score =  130 bits (330), Expect = 3e-38
 Identities = 49/87 (56%), Positives = 60/87 (68%), Gaps = 2/87 (2%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
            V  PMG+DAFGLPAENAA + G DP +WT  NI  MK QL+  G  ++W  E  TCDP+
Sbjct: 39  NVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPE 98

Query: 99  YYKWTQALFLDLYHAGLVYRKE--VDY 123
           YYK+TQ LFL LY  GL Y+KE  V++
Sbjct: 99  YYKFTQWLFLKLYEKGLAYKKEAPVNW 125

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314

>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase

 Score =  113 bits (285), Expect = 3e-30
 Identities = 42/82 (51%), Positives = 56/82 (68%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAE  A + G  P+  T+ NIA  +SQL+  G  ++W+ E++T +P+Y
Sbjct: 151 VLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEY 210

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           YKWTQ +FL L   GL Y+ EV
Sbjct: 211 YKWTQWIFLQLLKRGLAYQAEV 232

Length = 963

>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 40  VFQPMGWDAFGLP----AENAAHQHGI--DP----------REWTVGNIATMKSQLQGFG 83
           VF P GWD  GLP     E     +GI  D           RE T  +    +   +  G
Sbjct: 78  VFFPQGWDDNGLPTERKVEK---YYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLG 134

Query: 84  CKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 120
              +W  E  T  P+Y + +Q  FLDLY  GL+YR E
Sbjct: 135 LSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAE 171

Length = 800

>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases

 Score = 66.5 bits (163), Expect = 7e-14
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 16/95 (16%)

Query: 40  VFQPMGWDAFGLPAEN---------AAHQHGIDPR-------EWTVGNIATMKSQLQGFG 83
           V  P G D  G+  +             +H +          EW   +   ++ QL+  G
Sbjct: 41  VLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLG 100

Query: 84  CKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118
              +W  E  T DP   +  Q  F+ LY  GL+YR
Sbjct: 101 ASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382

>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGI-------------DPREWTVGNIATMKSQLQGFGCK 85
            V    GWD  GLP E  A + G              DP+E+        K   +  G  
Sbjct: 39  EVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGIS 98

Query: 86  FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 120
           ++W  E  T +P+Y K  + +F  LY  GL+YR  
Sbjct: 99  YDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGT 133

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312

>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 16/97 (16%)

Query: 40  VFQPMGWDAFGLPAENA-----------AHQHGIDP-----REWTVGNIATMKSQLQGFG 83
           V  P G D  G+  +              H  G +       EW   +  T++ QL+  G
Sbjct: 73  VLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLG 132

Query: 84  CKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 120
              +W  E  T DP   +  Q  F+ LY  GL+YR E
Sbjct: 133 VSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGE 169

Length = 877

>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 41  FQPMGWDAFGLPAENAAH-QHGID-------PRE--------WTVGNIATMKSQLQGFGC 84
           + P G D  G+  +     + G +        RE        W   +  T+K+Q++  G 
Sbjct: 75  WLP-GTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGA 133

Query: 85  KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 120
             +W  E  T D    K  +  F+ LY  GL+YR E
Sbjct: 134 SLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGE 169

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861

>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 25  CRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84
            RL G          VF   G D  G   E  A + GI P+E    N    K   +    
Sbjct: 38  LRLRGYE--------VFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNI 89

Query: 85  KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 120
            F  ++ + T  P++ +  Q  FL LY  G +Y +E
Sbjct: 90  SF--DNFIRTTSPEHKELVQEFFLKLYENGDIYLRE 123

Length = 558

>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 25  CRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84
            RL G +        V    G D  G   E  A + G+ P+E         K   +    
Sbjct: 33  QRLRGYD--------VLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNI 84

Query: 85  KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEV 121
            F++     T  P++ +  Q  F  LY  G +Y  E 
Sbjct: 85  SFDYFIR--TTSPRHKEIVQEFFKKLYENGYIYEGEY 119

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319

>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 44  MGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWT 103
            G D  G   E AA + G+ P+E         K   + F   F+      T   ++ +  
Sbjct: 43  TGTDEHGTKIELAAEKEGVTPQELVDRYHEEFKELFKKFNISFDDFIR--TTSERHKELV 100

Query: 104 QALFLDLYHAGLVYRKEVDYSQ 125
           Q  FL LY  G +Y  E  Y  
Sbjct: 101 QEFFLKLYEKGDIYEGE--YEG 120

This family includes methionyl tRNA synthetases. Length = 388

>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 45  GWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQ 104
           G D  G   E  A Q G+ P+E         K   +     F  +  + T D ++ +  Q
Sbjct: 44  GTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISF--DRFIRTTDEEHKEIVQ 101

Query: 105 ALFLDLYHAGLVYRKE------VDYSQNLPTKF 131
            +F  L   G +Y KE       +    LP ++
Sbjct: 102 KIFQKLKENGYIYEKEIKQLYCPECEMFLPDRY 134

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530

>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V)

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 20/108 (18%)

Query: 41  FQPMGWDAFGLPAE------------NAAHQHGIDP-----REWTVGNIATMKSQLQGFG 83
           + P GWD  GLP E               H+ G +      REW +     ++SQ +  G
Sbjct: 65  WVP-GWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLG 123

Query: 84  CKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR--KEVDYSQNLPT 129
              +W+ E  T DP        +F+ L+  GL+YR  K V++S  L T
Sbjct: 124 VSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNT 171

Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606

>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed

 Score = 37.8 bits (89), Expect = 8e-04
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 47  DAFGLPAENAAHQHGIDPREWTVGNIATM-KSQLQGFGCKF-NWESELATCDPKYYKWTQ 104
           DA G P    A + GI P E  +       K    GFG  F N+ S   T   +  +  Q
Sbjct: 49  DAHGTPIMLKAEKEGITPEE-LIARYHAEHKRDFAGFGISFDNYGS---THSEENRELAQ 104

Query: 105 ALFLDLYHAGLVYRKEV 121
            ++L L   G +Y K +
Sbjct: 105 EIYLKLKENGYIYEKTI 121

Length = 673

>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 45  GWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQ 104
           G D  G P E AA + G+ P+E         K   +  G  ++  +   T  P +++  Q
Sbjct: 49  GSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISYDLFTR--TTSPNHHEVVQ 106

Query: 105 ALFLDLYHAGLVYRKEV 121
             FL LY  G +Y+K +
Sbjct: 107 EFFLKLYENGYIYKKTI 123

Length = 556

>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 45  GWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKF-NWESELATCDPKYYKWT 103
           G D  G   +  A + GI P+E    N A  K   +     + ++   + T DP++ +  
Sbjct: 46  GTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDDF---IRTTDPRHKEAV 102

Query: 104 QALFLDLYHAGLVYRKE 120
           Q +F  L   G +Y  +
Sbjct: 103 QEIFQRLLANGDIYLGK 119

Length = 511

>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 28/122 (22%)

Query: 31  NSIIKGPVRVFQPM---------GWDAFGLPAENAAHQ----HGIDP------------- 64
           N I+K  +  ++ M         GWD  GLP E+   +     G                
Sbjct: 58  NKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKC 117

Query: 65  REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR--KEVD 122
           RE+ +  I   + Q Q  G   +WE+   T DP Y +    LF + +  GL+YR  K V 
Sbjct: 118 REFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVY 177

Query: 123 YS 124
           +S
Sbjct: 178 WS 179

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	100.0
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	100.0
KOG0435|consensus	876		100.0
PLN02563	963	aminoacyl-tRNA ligase	100.0
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	100.0
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	100.0
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	100.0
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	100.0
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	100.0
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	100.0
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	100.0
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	100.0
COG0525	877	ValS Valyl-tRNA synthetase [Translation, ribosomal	100.0
PLN02943	958	aminoacyl-tRNA ligase	100.0
COG0143	558	MetG Methionyl-tRNA synthetase [Translation, ribos	100.0
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	100.0
PLN02381	1066	valyl-tRNA synthetase	100.0
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	100.0
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	100.0
PLN02843	974	isoleucyl-tRNA synthetase	100.0
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	100.0
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	100.0
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	100.0
PF09334	391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	100.0
PLN02224	616	methionine-tRNA ligase	100.0
PLN02882	1159	aminoacyl-tRNA ligase	100.0
COG0060	933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	100.0
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	100.0
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	100.0
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	100.0
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	100.0
PLN02610	801	probable methionyl-tRNA synthetase	100.0
PRK12268	556	methionyl-tRNA synthetase; Reviewed	100.0
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	100.0
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	99.98
PLN02959	1084	aminoacyl-tRNA ligase	99.98
PRK12267	648	methionyl-tRNA synthetase; Reviewed	99.98
PRK11893	511	methionyl-tRNA synthetase; Reviewed	99.97
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	99.97
PRK12418	384	cysteinyl-tRNA synthetase; Provisional	99.96
PLN02946	557	cysteine-tRNA ligase	99.96
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	99.96
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	99.96
TIGR03447	411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	99.96
PRK14535	699	cysS cysteinyl-tRNA synthetase; Provisional	99.95
PRK14536	490	cysS cysteinyl-tRNA synthetase; Provisional	99.95
KOG0433|consensus	937		99.95
PRK14534	481	cysS cysteinyl-tRNA synthetase; Provisional	99.95
PTZ00399	651	cysteinyl-tRNA-synthetase; Provisional	99.95
KOG0436|consensus	578		99.95
KOG0432|consensus	995		99.94
PF01406	300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	99.94
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	99.94
COG0215	464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	99.92
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	99.91
KOG0434|consensus	1070		99.9
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	99.89
KOG2007|consensus	586		99.83
cd00674	353	LysRS_core_class_I catalytic core domain of class	99.76
cd00802	143	class_I_aaRS_core catalytic core domain of class I	99.75
KOG1247|consensus	567		99.73
KOG0437|consensus	1080		99.66
PRK12451	562	arginyl-tRNA synthetase; Reviewed	99.61
PF00750	354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	99.58
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	99.55
COG0018	577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	99.54
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	99.53
PLN02286	576	arginine-tRNA ligase	99.49
cd09287	240	GluRS_non_core catalytic core domain of non-discri	99.49
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	99.37
cd00807	238	GlnRS_core catalytic core domain of glutaminyl-tRN	99.33
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	99.33
PLN03233	523	putative glutamate-tRNA ligase; Provisional	99.31
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	99.31
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	99.31
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	99.3
PTZ00402	601	glutamyl-tRNA synthetase; Provisional	99.29
PF00749	314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	99.27
PLN02907	722	glutamate-tRNA ligase	99.26
TIGR00440	522	glnS glutaminyl-tRNA synthetase. This protein is a	99.24
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	99.24
PRK12410	433	glutamylglutaminyl-tRNA synthetase; Provisional	99.23
PRK05347	554	glutaminyl-tRNA synthetase; Provisional	99.22
PTZ00437	574	glutaminyl-tRNA synthetase; Provisional	99.22
PRK12558	445	glutamyl-tRNA synthetase; Provisional	99.21
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	99.19
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	99.17
PRK14703	771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	99.14
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	99.12
PLN02859	788	glutamine-tRNA ligase	99.12
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	99.09
PLN02627	535	glutamyl-tRNA synthetase	99.06
cd00808	239	GluRS_core catalytic core domain of discriminating	99.04
KOG1147|consensus	712		98.99
KOG1148|consensus	764		98.34
KOG1149|consensus	524		98.2
KOG4426|consensus	656		98.17
PF01921	360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	98.12
COG1384	521	LysS Lysyl-tRNA synthetase (class I) [Translation,	97.93
KOG1195|consensus	567		97.57
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	95.99
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	95.15
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	95.15
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	94.94
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	94.37
PLN02486	383	aminoacyl-tRNA ligase	94.16
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	93.88
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	93.78
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	93.77
PLN02886	389	aminoacyl-tRNA ligase	93.05
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	92.99
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	92.66
PRK05912	408	tyrosyl-tRNA synthetase; Validated	92.29
PRK08560	329	tyrosyl-tRNA synthetase; Validated	92.27
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	91.16
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	91.15
PRK12282	333	tryptophanyl-tRNA synthetase II; Reviewed	90.79
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	90.04
TIGR00234	377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	89.54
PF00579	292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	86.84
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	82.12

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.4e-39  Score=274.58  Aligned_cols=124  Identities=45%  Similarity=0.754  Sum_probs=121.4

Q ss_pred             CCCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ   80 (133)
Q Consensus         1 ~y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~   80 (133)
                      || |||||.||+||+|++++.|+++||+||+|     |+|++++|||.+|+|+|.+|.+.|.+|..|+..+++.|+++|+
T Consensus        41 mf-PYpSG~LHvGH~r~Yti~Dv~aRykRm~G-----yNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk  114 (814)
T COG0495          41 MF-PYPSGALHVGHVRNYTIGDVIARYKRMQG-----YNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLK  114 (814)
T ss_pred             CC-CCCCCCcccCccccccHHHHHHHHHHhcC-----CeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            45 48999999999999999999999999999     9999999999999999999999999999999999999999999


Q ss_pred             hcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          81 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        81 ~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +||.++||++++.|++|+|.+++||+|.+|+++|+||+++.+|+|||.++
T Consensus       115 ~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~  164 (814)
T COG0495         115 SLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDG  164 (814)
T ss_pred             HhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcC
Confidence            99999999999999999999999999999999999999999999999986

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=100.00  E-value=1.2e-37  Score=268.69  Aligned_cols=123  Identities=46%  Similarity=0.786  Sum_probs=121.4

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|++++|||+||+|||.+|++.|++|.++++++++.|++++++|
T Consensus        37 pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l  111 (842)
T TIGR00396        37 FPYPSGALHMGHVRNYTITDVLSRYYRMKG-----YNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL  111 (842)
T ss_pred             CCCCCCccccchhHHHHHHHHHHHHHHhcC-----CceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |+++||++++.|++|+|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~  159 (842)
T TIGR00396       112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDG  159 (842)
T ss_pred             CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCC
Confidence            999999999999999999999999999999999999999999999987

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>KOG0435|consensus

Probab=100.00  E-value=1.1e-38  Score=263.30  Aligned_cols=124  Identities=44%  Similarity=0.843  Sum_probs=121.3

Q ss_pred             CCCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ   80 (133)
Q Consensus         1 ~y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~   80 (133)
                      || |||+|.|||||.|.|+++|+++||.||+|     |+|+.++|||.+|+|.|++|.+.|++|..|+.++++.|+++|+
T Consensus        64 MF-PYPSG~LHiGHvRVYTIsD~laRf~rm~G-----ynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~  137 (876)
T KOG0435|consen   64 MF-PYPSGALHIGHVRVYTISDILARFYRMKG-----YNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLK  137 (876)
T ss_pred             ec-CCCCCcccccceEEEEehHHHHHHHHhcC-----ceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHH
Confidence            45 48999999999999999999999999999     9999999999999999999999999999999999999999999


Q ss_pred             hcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          81 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        81 ~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +||+++||++++.|++|+|.+|+|++|.+|+++|++|+.+..|+|||.++
T Consensus       138 ~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~  187 (876)
T KOG0435|consen  138 SLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDK  187 (876)
T ss_pred             HcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccc
Confidence            99999999999999999999999999999999999999999999999875

>PLN02563 aminoacyl-tRNA ligase

Probab=100.00  E-value=2.7e-37  Score=268.50  Aligned_cols=123  Identities=37%  Similarity=0.622  Sum_probs=120.6

Q ss_pred             CCCCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           3 DCTEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         3 ~~~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      +|||||. |||||+++++++|+++||+||+|     ++|++++|||+||+|+|.+|.+.|+.|.+++.++++.|+++|++
T Consensus       118 ~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G-----~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~  192 (963)
T PLN02563        118 FPYPSGAGLHVGHPEGYTATDILARYKRMQG-----YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS  192 (963)
T ss_pred             CCCCCCcccchhhHHHHHHHHHHHHHHHhcC-----CeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence            4899996 99999999999999999999999     99999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||+++||++++.|++|.|.+++|++|.+|+++|+||++.++|+|||.++
T Consensus       193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~  241 (963)
T PLN02563        193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG  241 (963)
T ss_pred             hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcC
Confidence            9999999999999999999999999999999999999999999999986

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=100.00  E-value=3.7e-37  Score=264.93  Aligned_cols=124  Identities=45%  Similarity=0.749  Sum_probs=121.6

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|.+++|||+||+|||.+|++.|++|.++++++++.|+++|++|
T Consensus        40 pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l  114 (805)
T PRK00390         40 FPYPSGGLHMGHVRNYTIGDVIARYKRMQG-----YNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL  114 (805)
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF  131 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~  131 (133)
                      |+++||++++.|++|+|.++++++|.+|+++|+||++.++|+|||.++-
T Consensus       115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t  163 (805)
T PRK00390        115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGT  163 (805)
T ss_pred             CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCC
Confidence            9999999999999999999999999999999999999999999999874

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=100.00  E-value=4.1e-36  Score=240.40  Aligned_cols=124  Identities=21%  Similarity=0.334  Sum_probs=116.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---------CCCh-------HH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------GIDP-------RE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------g~~~-------~~   66 (133)
                      +|||||.|||||+++++++|+++||+|++|     ++|.+++|+|+||+|||.+|++.         +++|       ++
T Consensus         9 pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G-----~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~   83 (382)
T cd00817           9 PPNVTGSLHMGHALNNTIQDIIARYKRMKG-----YNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWE   83 (382)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhcC-----CcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHH
Confidence            689999999999999999999999999999     99999999999999999998764         3454       46


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF  131 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~  131 (133)
                      +++++.+.+++++++||+++||+++++|++|.|.+.++++|.+|+++|+||++.++++|||.++-
T Consensus        84 ~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t  148 (382)
T cd00817          84 WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRT  148 (382)
T ss_pred             HHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999863

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=3.7e-36  Score=262.86  Aligned_cols=123  Identities=21%  Similarity=0.297  Sum_probs=118.1

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC----------------hH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID----------------PR   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~----------------~~   65 (133)
                      ||||||.||+||+++++++|+++||+||+|     ++|.+++||||||+|||.++++. |++                ++
T Consensus        49 PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G-----~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~  123 (975)
T PRK06039         49 PPTANGLPHYGHLLTRTIKDVVPRYKTMKG-----YKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR  123 (975)
T ss_pred             CCCCCCCccHhhhHhhHHHHHHHHHHHhCC-----CcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence            689999999999999999999999999999     99999999999999999999774 654                57


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +|+.++++.+++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       124 ~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~  188 (975)
T PRK06039        124 ESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCE  188 (975)
T ss_pred             HHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999986

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=3.9e-36  Score=258.65  Aligned_cols=123  Identities=30%  Similarity=0.472  Sum_probs=118.7

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-cCCChH------------HHHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-HGIDPR------------EWTV   69 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-~g~~~~------------~~~~   69 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|.+++|||+||+|||.+|++ .|+++.            +|++
T Consensus        46 pPy~nG~lHiGH~~~~~~~D~~~R~~r~~G-----~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~  120 (800)
T PRK13208         46 PPTVSGSLHIGHVFSYTHTDFIARYQRMRG-----YNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTD  120 (800)
T ss_pred             cCCCCCCccHHHHHhHHHHHHHHHHHHcCC-----CcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999     9999999999999999999987 488765            6999


Q ss_pred             HHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          70 GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        70 ~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ++.+.|++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       121 ~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~  181 (800)
T PRK13208        121 EDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCE  181 (800)
T ss_pred             HHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999986

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=100.00  E-value=6.5e-36  Score=258.86  Aligned_cols=123  Identities=26%  Similarity=0.385  Sum_probs=117.5

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC------h----------H
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID------P----------R   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~------~----------~   65 (133)
                      ||||||.|||||+++++++|+++||+||+|     ++|++++||||||+|||.+|++. |++      +          +
T Consensus        44 pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G-----~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~  118 (861)
T TIGR00392        44 PPYANGSIHLGHALNKILKDIILRYKTMQG-----FNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR  118 (861)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHcCC-----CccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence            689999999999999999999999999999     99999999999999999999765 654      3          4


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +++.++++.|++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~  183 (861)
T TIGR00392       119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCR  183 (861)
T ss_pred             HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999986

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.3e-35  Score=258.83  Aligned_cols=123  Identities=18%  Similarity=0.237  Sum_probs=115.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----CCC------------hHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH----GID------------PRE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~----g~~------------~~~   66 (133)
                      ||||||.||||||+|++++|+++||+||+|     ++|.+++||||||+|||.++++.    |.+            +++
T Consensus        62 PPyanG~lHiGHaln~~lkDii~Ry~rm~G-----~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~  136 (961)
T PRK13804         62 PPYANGNIHIGHALNKILKDVIVRSKQMLG-----FDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE  136 (961)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHhcC-----CcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence            789999999999999999999999999999     99999999999999999988654    332            256


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ++.++++.|++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~  200 (961)
T PRK13804        137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVER  200 (961)
T ss_pred             HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCC
Confidence            8899999999999999999999999999999999999999999999999999999999999986

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.6e-35  Score=257.35  Aligned_cols=123  Identities=15%  Similarity=0.202  Sum_probs=117.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc------CCChH-------HHHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH------GIDPR-------EWTV   69 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~------g~~~~-------~~~~   69 (133)
                      |||+||.||||||++++++|+++||+||+|     ++|.+++||||||+|||.+|++.      ++++.       ++++
T Consensus        57 pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G-----~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~  131 (912)
T PRK05743         57 PPYANGDIHIGHALNKILKDIIVKSKTMSG-----FDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL  131 (912)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHccC-----CcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999     99999999999999999999874      56664       5899


Q ss_pred             HHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          70 GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        70 ~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ++++.+++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~  192 (912)
T PRK05743        132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCG  192 (912)
T ss_pred             HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999985

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=3.7e-35  Score=246.15  Aligned_cols=123  Identities=29%  Similarity=0.490  Sum_probs=110.1

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC----------------hH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID----------------PR   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~----------------~~   65 (133)
                      |||+||.||+||+++++++|+++||+||+|     ++|++++||||||+|||.++++. |..                ++
T Consensus        31 PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G-----~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~  105 (601)
T PF00133_consen   31 PPYANGDLHIGHALNKTIKDIIARYKRMQG-----YNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECR  105 (601)
T ss_dssp             --BTSSS-BHHHHHHHHHHHHHHHHHHCTT-----SEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHH
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHhCC-----cEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhc
Confidence            689999999999999999999999999999     99999999999999999998763 331                47


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +|++++++.+++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       106 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~  170 (601)
T PF00133_consen  106 EWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQ  170 (601)
T ss_dssp             HHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTT
T ss_pred             chhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999986

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.6e-35  Score=250.21  Aligned_cols=123  Identities=24%  Similarity=0.355  Sum_probs=116.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----CCC------------hHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH----GID------------PRE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~----g~~------------~~~   66 (133)
                      |||+||.||||||++.++.|+++||+||+|     |+|++++|+||+|+++|.++++.    |++            .++
T Consensus        41 PPNVTG~LHmGHAl~~tl~D~l~RykRM~G-----~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~we  115 (877)
T COG0525          41 PPNVTGSLHMGHALNYTLQDILARYKRMRG-----YNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWE  115 (877)
T ss_pred             CCCCCCcccchhhhhHHHHHHHHHHHHcCC-----CeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Confidence            789999999999999999999999999999     99999999999999999888652    655            278


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |.+++.+.|.++|++||++.||++++.|+||.+.++|+++|.+|+++|+||+++++|+|||.++
T Consensus       116 Wk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~  179 (877)
T COG0525         116 WKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCR  179 (877)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999986

>PLN02943 aminoacyl-tRNA ligase

Probab=100.00  E-value=6e-35  Score=254.67  Aligned_cols=123  Identities=18%  Similarity=0.239  Sum_probs=115.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH----cCCC------------hHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ----HGID------------PRE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~----~g~~------------~~~   66 (133)
                      ||||||.|||||+++++++|+++||+||+|     ++|++++|||+||+|+|.++++    .|++            +++
T Consensus        96 PP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~  170 (958)
T PLN02943         96 PPNVTGSLHMGHAMFVTLEDIMVRYNRMKG-----RPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE  170 (958)
T ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHhcC-----CeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence            799999999999999999999999999999     9999999999999999887754    3654            367


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |++++.+.|++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~  234 (958)
T PLN02943        171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQ  234 (958)
T ss_pred             HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCC
Confidence            8899999999999999999999999999999999999999999999999999999999999976

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-34  Score=239.84  Aligned_cols=123  Identities=22%  Similarity=0.289  Sum_probs=119.0

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      .|||||+|||||+++++.+|+++||+|++|     ++|.|++|+|+||+||+.+|+++|++|+++++++...++++++.|
T Consensus        13 lpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G-----~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l   87 (558)
T COG0143          13 LPYPNGPPHLGHLYTYLAADVYARYLRLRG-----YEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL   87 (558)
T ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHhcC-----CeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY  132 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~  132 (133)
                      +|++|  .+.+|+++.|.+.+|++|.+|+++|+||.+...++||++++=|
T Consensus        88 ~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~f  135 (558)
T COG0143          88 NISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERF  135 (558)
T ss_pred             CCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEccccccc
Confidence            99888  7889999999999999999999999999999999999998643

>TIGR00422 valS valyl-tRNA synthetase

Probab=100.00  E-value=5.6e-35  Score=253.07  Aligned_cols=123  Identities=21%  Similarity=0.299  Sum_probs=116.6

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----CCCh------------HH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH----GIDP------------RE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~----g~~~------------~~   66 (133)
                      |||+||.|||||+++++++|+++||+||+|     ++|++++||||||+|||.++++.    |.++            ++
T Consensus        41 pPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~  115 (861)
T TIGR00422        41 PPNVTGSLHIGHALNWSIQDIIARYKRMKG-----YNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWE  115 (861)
T ss_pred             CCCCCCCCcHHHhHHHHHHHHHHHHHHhcC-----CcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHH
Confidence            689999999999999999999999999999     99999999999999999888653    5554            58


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |++++.+.+++++++||+++||++++.|++|.|.++|+++|.+|+++|+||++.++|+|||.++
T Consensus       116 ~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~  179 (861)
T TIGR00422       116 WKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLN  179 (861)
T ss_pred             HHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999986

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>PLN02381 valyl-tRNA synthetase

Probab=100.00  E-value=7.6e-35  Score=255.81  Aligned_cols=123  Identities=18%  Similarity=0.267  Sum_probs=116.5

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-----cCCCh------------H
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-----HGIDP------------R   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-----~g~~~------------~   65 (133)
                      ||||||.|||||+++++++|+++||+||+|     ++|++++||||||+|+|.++++     .|+++            +
T Consensus       136 pPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~  210 (1066)
T PLN02381        136 PPNVTGALHIGHALTAAIEDTIIRWKRMSG-----YNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW  210 (1066)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHhCC-----CcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence            689999999999999999999999999999     9999999999999999998865     35543            5


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +|++++++.|++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~  275 (1066)
T PLN02381        211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLR  275 (1066)
T ss_pred             HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999986

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=7.4e-35  Score=252.58  Aligned_cols=123  Identities=20%  Similarity=0.289  Sum_probs=115.5

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH----cCCCh------------HH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ----HGIDP------------RE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~----~g~~~------------~~   66 (133)
                      |||+||.|||||+++++++|+++||+||+|     ++|++++||||||+|+|.++++    .|+++            ++
T Consensus        44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~  118 (874)
T PRK05729         44 PPNVTGSLHMGHALNNTLQDILIRYKRMQG-----YNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWE  118 (874)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHH
Confidence            789999999999999999999999999999     9999999999999998877654    36664            46


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |++++.+.+++++++||++.||++++.|++|.|.++|+++|.+|+++|+||++.++|+|||.++
T Consensus       119 w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~  182 (874)
T PRK05729        119 WKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQ  182 (874)
T ss_pred             HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999976

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=100.00  E-value=2.6e-34  Score=224.85  Aligned_cols=123  Identities=42%  Similarity=0.676  Sum_probs=119.3

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.+||||+++++++|+++||+|++|     ++|.+++|+||||+||+.+|++.|++|.++++++.+.+++++++|
T Consensus         8 ~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G-----~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l   82 (314)
T cd00812           8 FPYPSGALHVGHVRTYTIGDIIARYKRMQG-----YNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRM   82 (314)
T ss_pred             CCCCCCCccccchHHHHHHHHHHHHHHHcC-----CCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||++||..++.|++|.|.+.++++|.+|+++|+||+++++++||.+++
T Consensus        83 gi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (314)
T cd00812          83 GFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLD  130 (314)
T ss_pred             ccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccc
Confidence            999999889999999999999999999999999999999999996654

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PLN02843 isoleucyl-tRNA synthetase

Probab=100.00  E-value=2.5e-34  Score=251.07  Aligned_cols=123  Identities=20%  Similarity=0.336  Sum_probs=115.1

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-------CCCh-------HHHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-------GIDP-------REWT   68 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-------g~~~-------~~~~   68 (133)
                      ||||||.||||||++.+++|+++||+||+|     ++|.+++||||||+|||.++++.       +++|       ++++
T Consensus        40 PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G-----~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~  114 (974)
T PLN02843         40 PPYANGDLHIGHALNKILKDFINRYQLLQG-----KKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA  114 (974)
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHhcC-----CccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence            789999999999999999999999999999     99999999999999999988542       3454       5668


Q ss_pred             HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +++++.|++++++||++.||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus       115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~  176 (974)
T PLN02843        115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSR  176 (974)
T ss_pred             HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999985

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=100.00  E-value=2.6e-34  Score=250.40  Aligned_cols=123  Identities=18%  Similarity=0.215  Sum_probs=116.3

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---------------C------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------------G------   61 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------------g------   61 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|++++|||+||+||+..|++.               +      
T Consensus        33 pPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G-----~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i  107 (938)
T TIGR00395        33 YPYLNGVMHAGHCRTFTIPEVSARFERMKG-----KNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL  107 (938)
T ss_pred             CCCCCCCcccchhhhhhHHHHHHHHHHhcC-----CccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence            689999999999999999999999999999     99999999999999999887651               1      


Q ss_pred             ---CChHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          62 ---IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        62 ---~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                         .+|++|++++.+.+++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~  179 (938)
T TIGR00395       108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDG  179 (938)
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCC
Confidence               346889999999999999999999999999999999999999999999999999999999999999986

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=100.00  E-value=3.5e-34  Score=251.62  Aligned_cols=123  Identities=16%  Similarity=0.222  Sum_probs=115.3

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-----cCCC------------hH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-----HGID------------PR   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-----~g~~------------~~   65 (133)
                      ||||||.|||||+++++++|+++||+||+|     ++|++++|||+||+|+|.++++     .|.+            ++
T Consensus        56 PP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~  130 (1052)
T PRK14900         56 PPNVTGSLHLGHALTATLQDVLIRWKRMSG-----FNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW  130 (1052)
T ss_pred             CCCCCCcchHHHHHhhHHHHHHHHHHHhcC-----CcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence            789999999999999999999999999999     9999999999999999987764     2333            35


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +|++++.+.|++++++||+++||++++.|++|+|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~  195 (1052)
T PRK14900        131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCR  195 (1052)
T ss_pred             HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999986

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=100.00  E-value=4.6e-34  Score=250.22  Aligned_cols=123  Identities=19%  Similarity=0.256  Sum_probs=114.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-----cCCCh------------H
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-----HGIDP------------R   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-----~g~~~------------~   65 (133)
                      ||||||.|||||+++++++|+++||+||+|     ++|++++|||+||+|++.++++     .|+++            +
T Consensus        68 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G-----~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~  142 (995)
T PTZ00419         68 PPNVTGYLHIGHALTGAIQDSLIRYHRMKG-----DETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW  142 (995)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHhcC-----CcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence            689999999999999999999999999999     9999999999999999766543     35442            5


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +|++++.+.|+++|++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~  207 (995)
T PTZ00419        143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLK  207 (995)
T ss_pred             HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999986

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=3.9e-34  Score=229.64  Aligned_cols=123  Identities=22%  Similarity=0.286  Sum_probs=111.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++.+|+++||+|++|     ++|.+++|+|+||+||+.+|+++|++|.++++++.+.++++++++
T Consensus         7 ~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G-----~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~   81 (391)
T PF09334_consen    7 IPYPNGDLHLGHLYPYLAADVLARYLRLRG-----HDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEAL   81 (391)
T ss_dssp             EEETSSS-BHHHHHHHHHHHHHHHHHHHTT------EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCChhHHHHHHHHHHHHHhhcc-----cceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            479999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY  132 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~  132 (133)
                      ||++|  .+.+|+++.|.+.|+++|++|+++|+||+++..++||+.++-|
T Consensus        82 ~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~f  129 (391)
T PF09334_consen   82 NISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERF  129 (391)
T ss_dssp             T---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEE
T ss_pred             CCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcc
Confidence            99887  6789999999999999999999999999999999999998643

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....

>PLN02224 methionine-tRNA ligase

Probab=100.00  E-value=8.7e-34  Score=237.75  Aligned_cols=123  Identities=15%  Similarity=0.197  Sum_probs=118.4

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++++|+++||+|++|     ++|.+++|+||||+||+.+|++.|++|.++|+++.+.+++.+++|
T Consensus        77 ~pY~NG~~HiGHa~~~~~aDviaR~~r~~G-----~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l  151 (616)
T PLN02224         77 LYYVNAPPHMGSAYTTIAADSIARFQRLLG-----KKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL  151 (616)
T ss_pred             CCCCCCCCchhccHHHHHHHHHHHHHHhcC-----CceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence            579999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY  132 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~  132 (133)
                      ||++|  .+++|++|.|.+.|+++|.+|+++|+||+++++++|||.++=|
T Consensus       152 ~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f  199 (616)
T PLN02224        152 DIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEY  199 (616)
T ss_pred             CCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCC
Confidence            99665  7889999999999999999999999999999999999998743

>PLN02882 aminoacyl-tRNA ligase

Probab=100.00  E-value=4.9e-34  Score=252.12  Aligned_cols=123  Identities=23%  Similarity=0.338  Sum_probs=116.6

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-cCCC----------------hH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-HGID----------------PR   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-~g~~----------------~~   65 (133)
                      |||+||.||+||+++++++|+++||+||+|     ++|.+++||||||+|||.++++ .|++                ++
T Consensus        46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G-----~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~  120 (1159)
T PLN02882         46 PPFATGLPHYGHILAGTIKDIVTRYQSMTG-----HHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECR  120 (1159)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHcCC-----CcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHH
Confidence            789999999999999999999999999999     9999999999999999999864 4653                36


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +++.++.+.+++++++||++.||+++|.|++|.|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus       121 ~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~  185 (1159)
T PLN02882        121 SIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACK  185 (1159)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999975

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-34  Score=246.31  Aligned_cols=123  Identities=25%  Similarity=0.365  Sum_probs=116.3

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC---------------hHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID---------------PRE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~---------------~~~   66 (133)
                      |||+||.+|||||.|.+++|++.||+.|+|     |+|.+++||||||+|||.++++. |++               .++
T Consensus        57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G-----~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~  131 (933)
T COG0060          57 PPYANGNIHIGHALNKILKDIIVRYKTMQG-----YDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCRE  131 (933)
T ss_pred             CCCCCCCcchhhhHHHhhhhhhhhhhcccC-----CcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHH
Confidence            799999999999999999999999999999     99999999999999999998764 522               367


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ++.++++.+++++++||++.||+++|.|++++|.+.++++|++|+++|++|++.++|+|||+|.
T Consensus       132 ~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~  195 (933)
T COG0060         132 FALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCE  195 (933)
T ss_pred             HHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCC
Confidence            8889999999999999999999999999999999999999999999999999999999999985

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=100.00  E-value=5.8e-34  Score=251.72  Aligned_cols=123  Identities=17%  Similarity=0.235  Sum_probs=116.3

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC----------------hH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID----------------PR   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~----------------~~   65 (133)
                      ||||||.||+|||++.+++|+++||+||+|     ++|.+++||||||+|||.++++. |++                ++
T Consensus       110 PPyanG~lHiGHal~~tikDii~Ry~rm~G-----~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~  184 (1205)
T PTZ00427        110 PPFATGLPHYGHLLAGIIKDCVTRYFYQCG-----FSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCR  184 (1205)
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHcCC-----CeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHH
Confidence            689999999999999999999999999999     99999999999999999999752 321                37


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +++.++.+.+++++++||++.||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus       185 ~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~  249 (1205)
T PTZ00427        185 GIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCN  249 (1205)
T ss_pred             HHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999985

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=100.00  E-value=9.5e-34  Score=223.67  Aligned_cols=118  Identities=26%  Similarity=0.392  Sum_probs=113.7

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCCh----------------H
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GIDP----------------R   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~~----------------~   65 (133)
                      ||||||++||||+++++++|+++||+|++|     ++|.+++|+||||+||+.+|++. |+++                +
T Consensus         9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G-----~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~   83 (338)
T cd00818           9 PPYANGLPHYGHALNKILKDIINRYKTMQG-----YYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCR   83 (338)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHhcC-----CccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHH
Confidence            789999999999999999999999999999     99999999999999999999886 7654                7


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeee
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQ  125 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~  125 (133)
                      ++++++.+.+++++++|||+.||+.++.|++++|.+.++++|.+|+++|+||+++++++|
T Consensus        84 ~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~  143 (338)
T cd00818          84 EFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW  143 (338)
T ss_pred             HHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence            999999999999999999999999999999999999999999999999999999999998

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=100.00  E-value=2.6e-33  Score=219.53  Aligned_cols=122  Identities=19%  Similarity=0.232  Sum_probs=117.0

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++++|+++||+|++|     ++|.+++|+||||+||+.+|+++|++|+++++.+.+.+++++++|
T Consensus         8 ~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G-----~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L   82 (319)
T cd00814           8 LPYVNGVPHLGHLYGTVLADVFARYQRLRG-----YDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL   82 (319)
T ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHhCC-----CcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            589999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF  131 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~  131 (133)
                      ||.+|  .+.+|+++.|.+.++++|++|.++|++|+++..++|||.++-
T Consensus        83 gI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~  129 (319)
T cd00814          83 NISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCER  129 (319)
T ss_pred             CCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCc
Confidence            99776  567788999999999999999999999999999999999874

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=100.00  E-value=2e-33  Score=219.27  Aligned_cols=120  Identities=26%  Similarity=0.427  Sum_probs=114.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCC-------------ChHHHHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGI-------------DPREWTV   69 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~-------------~~~~~~~   69 (133)
                      +|||||.+||||+++++++|+++||+|++|     ++|.+++|+|+||+||+.+|++.+.             +++++++
T Consensus         8 pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G-----~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
T cd00668           8 PPYANGSLHLGHALTHIIADFIARYKRMRG-----YEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVE   82 (312)
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHhCC-----CCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHH
Confidence            689999999999999999999999999999     9999999999999999999999877             7899999


Q ss_pred             HHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecC
Q psy6621          70 GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNL  127 (133)
Q Consensus        70 ~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~  127 (133)
                      ++.+.|++++++|||+.||+.++.|++|.|.+.++++|++|+++|+||++.++|..++
T Consensus        83 ~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~  140 (312)
T cd00668          83 EMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITE  140 (312)
T ss_pred             HHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeee
Confidence            9999999999999999999999999999999999999999999999999998876544

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>PLN02610 probable methionyl-tRNA synthetase

Probab=100.00  E-value=5.8e-33  Score=238.32  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=117.1

Q ss_pred             CCCCCCcCcchHHHH-HHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           3 DCTEEELTCLGGVVV-KTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         3 ~~~png~lHlGH~~~-~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      +|||||.|||||+++ ++.+|+++||+|++|     ++|+|++|+|+||+||+.+|++.|++|+++++++.+.+++++++
T Consensus        25 ~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G-----~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~   99 (801)
T PLN02610         25 LPYVNNVPHLGNIIGCVLSADVFARYCRLRG-----YNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW   99 (801)
T ss_pred             CCCCCCCcccchhhhhHHHHHHHHHHHHhCC-----CceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            589999999999997 678999999999999     99999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF  131 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~  131 (133)
                      |||++|  .+++|++|.|.+.++++|.+|+++|+||++...++|||.++=
T Consensus       100 l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~  147 (801)
T PLN02610        100 FDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQK  147 (801)
T ss_pred             cCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCC
Confidence            999877  778999999999999999999999999999999999999764

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=5.1e-33  Score=231.22  Aligned_cols=122  Identities=21%  Similarity=0.276  Sum_probs=117.1

Q ss_pred             CCCCCCcCcchHHHHH-HHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           3 DCTEEELTCLGGVVVK-THSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         3 ~~~png~lHlGH~~~~-~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      +|||||.|||||++++ +++|+++||+|++|     ++|.+++|+||||+||+.+|++.|++|.++++++.+.|++++++
T Consensus        11 ~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~   85 (556)
T PRK12268         11 WPYANGPLHLGHLAGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK   85 (556)
T ss_pred             CCCCCCCccccccccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            5899999999999997 99999999999999     99999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF  131 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~  131 (133)
                      |||+.|  .+++|++|+|.+.++++|.+|+++|+||++.++++|||.++-
T Consensus        86 l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~  133 (556)
T PRK12268         86 LGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGR  133 (556)
T ss_pred             cCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCc
Confidence            999776  467899999999999999999999999999999999999874

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=233.57  Aligned_cols=123  Identities=22%  Similarity=0.281  Sum_probs=118.0

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++++|+++||+|++|     ++|.+++|+|+||+||+.+|+++|++|.++++++.+.+++++++|
T Consensus        10 ~py~ng~~HiGH~~~~l~aDv~aR~~r~~G-----~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l   84 (673)
T PRK00133         10 LPYANGPIHLGHLVEYIQADIWVRYQRMRG-----HEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF   84 (673)
T ss_pred             CCCCCCcccccchHHHHHHHHHHHHHHhcC-----CeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY  132 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~  132 (133)
                      ||++|  .+++|++|.|.+.++++|.+|+++|+||+++.+++|||.++-|
T Consensus        85 ~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~  132 (673)
T PRK00133         85 GISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMF  132 (673)
T ss_pred             CCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCC
Confidence            99887  4678999999999999999999999999999999999998744

>TIGR00398 metG methionyl-tRNA synthetase

Probab=99.98  E-value=5.2e-32  Score=224.12  Aligned_cols=123  Identities=20%  Similarity=0.226  Sum_probs=117.5

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++.+|+++||+|++|     ++|.+++|+||||+||+.+|+++|++|.++++++.+.+++++++|
T Consensus         7 ~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G-----~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L   81 (530)
T TIGR00398         7 LPYANGKPHLGHAYTTILADVYARYKRLRG-----YEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL   81 (530)
T ss_pred             CCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY  132 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~  132 (133)
                      ||++|+  +.+|+++.|.+.++++|.+|.++|+||+++++++|||.++-|
T Consensus        82 gI~~D~--~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~  129 (530)
T TIGR00398        82 NISFDR--FIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMF  129 (530)
T ss_pred             CCCCCC--CccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcC
Confidence            998874  567899999999999999999999999999999999997643

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>PLN02959 aminoacyl-tRNA ligase

Probab=99.98  E-value=3e-32  Score=239.92  Aligned_cols=123  Identities=19%  Similarity=0.277  Sum_probs=110.1

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-------CCC------------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-------GID------------   63 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-------g~~------------   63 (133)
                      +||+||.|||||+++++++|+++||+||+|     ++|+|++||||||+||+..|++.       |..            
T Consensus        53 pPY~NG~lHiGHa~t~t~~D~i~Rykrm~G-----~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~  127 (1084)
T PLN02959         53 YPYMNGLLHLGHAFSLSKLEFAAAYHRLRG-----ANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAA  127 (1084)
T ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence            489999999999999999999999999999     99999999999999999987542       321            


Q ss_pred             -------------------------------------------------------hHHHHHHHHHHHHHHHHhcCccccc
Q psy6621          64 -------------------------------------------------------PREWTVGNIATMKSQLQGFGCKFNW   88 (133)
Q Consensus        64 -------------------------------------------------------~~~~~~~~~~~~~~~l~~lgi~~d~   88 (133)
                                                                             |..|++.+...++++|++||++.||
T Consensus       128 ~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW  207 (1084)
T PLN02959        128 AVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDW  207 (1084)
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeC
Confidence                                                                   1224444557789999999999999


Q ss_pred             CCceecCC--hhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          89 ESELATCD--PKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        89 ~~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      .+++.|++  |.|.+++++.|.+|+++|+||++.++|+|||.++
T Consensus       208 ~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~  251 (1084)
T PLN02959        208 RRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDG  251 (1084)
T ss_pred             CCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCC
Confidence            99999998  9999999999999999999999999999999986

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=99.98  E-value=1.2e-31  Score=226.62  Aligned_cols=123  Identities=20%  Similarity=0.256  Sum_probs=117.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.+||||+++++.+|+++||+|++|     ++|.+++|+|+||+||+.+|+++|++|+++++.+.+.|++++++|
T Consensus        12 ~py~ng~~HiGH~~~~~~aDv~~R~~r~~G-----~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l   86 (648)
T PRK12267         12 IYYPNGKPHIGHAYTTIAADALARYKRLQG-----YDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL   86 (648)
T ss_pred             CCCCCCCcccccchHHHHHHHHHHHHHhcC-----CceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            589999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY  132 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~  132 (133)
                      ||++|  .+++|+++.|.+.++++|.+|.++|+||+++..++||+.++-|
T Consensus        87 gI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~  134 (648)
T PRK12267         87 DISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETF  134 (648)
T ss_pred             CCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCcc
Confidence            99887  5678999999999999999999999999999999999987643

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=99.97  E-value=1.8e-31  Score=219.61  Aligned_cols=121  Identities=19%  Similarity=0.243  Sum_probs=116.3

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.+||||+++++.+|+++||+|++|     ++|.+++|+||||+||+.+|++.|++|.++++.+.+.++++|++|
T Consensus         9 ~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G-----~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   83 (511)
T PRK11893          9 IYYPNGKPHIGHAYTTLAADVLARFKRLRG-----YDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL   83 (511)
T ss_pred             CCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||.+|  .+++|+++.|.+.|+++|.+|.++|++|++.++++||+.++
T Consensus        84 ~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~  129 (511)
T PRK11893         84 NISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCE  129 (511)
T ss_pred             CCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeecccccc
Confidence            99877  45789999999999999999999999999999999999875

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=99.97  E-value=3.2e-31  Score=230.34  Aligned_cols=116  Identities=22%  Similarity=0.321  Sum_probs=109.8

Q ss_pred             CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---------------CC---------ChH
Q psy6621          10 TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------------GI---------DPR   65 (133)
Q Consensus        10 lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------------g~---------~~~   65 (133)
                      |||||+++++++|+++||+||+|     ++|++++|||+||+|||..|++.               |+         +|+
T Consensus         1 lHiGH~~~~t~~D~i~Ry~rm~G-----~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~   75 (897)
T PRK12300          1 LHVGHGRTYTIGDVIARYKRMRG-----YNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPE   75 (897)
T ss_pred             CccchhHHHHHHHHHHHHHHcCC-----CcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHH
Confidence            79999999999999999999999     99999999999999999887532               43         468


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +|++++.+.+++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus        76 ~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~  140 (897)
T PRK12300         76 YIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDN  140 (897)
T ss_pred             HHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999986

>PRK12418 cysteinyl-tRNA synthetase; Provisional

Probab=99.96  E-value=1.7e-29  Score=201.83  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=110.8

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||  +++||||+|++|.+|+++||+|++|     ++|.+++|+||||+||+.+|+++|++|+++++++.+.+.++
T Consensus        12 ~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G-----~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d   86 (384)
T PRK12418         12 MYVCGITPYDATHLGHAATYLAFDLVNRVWRDAG-----HDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED   86 (384)
T ss_pred             EEecCCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            6999988  6899999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCc-ccccCCceecCChhHHHHHHHHHHHHHHCCCeEEece----eeeecCCC
Q psy6621          79 LQGFGC-KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEV----DYSQNLPT  129 (133)
Q Consensus        79 l~~lgi-~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~v~~~~~~  129 (133)
                      +++||| ..|  .+.+|++  +++.+++++++|.++|++|+++.    +||||+..
T Consensus        87 ~~~Lni~~~~--~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~  138 (384)
T PRK12418         87 MEALRVLPPR--DYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA  138 (384)
T ss_pred             HHHhCCCCCC--ccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence            999998 343  4445665  48999999999999999999998    89999875

>PLN02946 cysteine-tRNA ligase

Probab=99.96  E-value=1.5e-29  Score=209.53  Aligned_cols=121  Identities=15%  Similarity=0.123  Sum_probs=114.3

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||  +.+||||+|++|.+|+++||+++.|     ++|.+++|+||+|+||+.+|++.|++|.++++++.+.+.++
T Consensus        83 ~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~G-----y~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d  157 (557)
T PLN02946         83 MYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLG-----YEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD  157 (557)
T ss_pred             EEEeCCccCCCCccccchhhHHHHHHHHHHHhcC-----CcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            7999999  5899999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621          79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (133)
                      +++|||..   ..+.|..++|++.+++++++|+++|++|++++.||||+..
T Consensus       158 ~~~LnI~~---p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~  205 (557)
T PLN02946        158 MAYLHCLP---PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK  205 (557)
T ss_pred             HHHCCCCC---CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc
Confidence            99999974   3456667789999999999999999999999999999874

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=99.96  E-value=6.7e-29  Score=203.09  Aligned_cols=120  Identities=15%  Similarity=0.101  Sum_probs=108.6

Q ss_pred             CCCCCC--CCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTE--EELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~p--ng~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+|  +|.+||||+|+++++|+++||+|++|     ++|.+++|+||+|++|+.+|++.|++|+++++.+.+.|+++
T Consensus        26 ~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G-----~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~  100 (463)
T PRK00260         26 MYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLG-----YKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED  100 (463)
T ss_pred             EEEeCCccCCCcccccchhHHHHHHHHHHHHhcC-----CceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            466655  58999999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcc-cccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621          79 LQGFGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~-~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (133)
                      +++|||. .|+..  +++  .|.+.+++++++|+++|++|+++++||||+..
T Consensus       101 ~~~Lgi~~~d~~~--r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~  148 (463)
T PRK00260        101 MDALNVLPPDIEP--RAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRK  148 (463)
T ss_pred             HHHcCCCCCCccc--ccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEeccc
Confidence            9999994 56532  222  37889999999999999999999999999875

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=99.96  E-value=7.1e-29  Score=202.98  Aligned_cols=121  Identities=13%  Similarity=0.047  Sum_probs=111.1

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||  |.+||||+|+++.+|+++||+|++|     ++|.+++|+||+|+||+.+|++.|++|.++++.+.+.+.++
T Consensus        24 ~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G-----~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~d   98 (465)
T TIGR00435        24 MYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLG-----YKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFED   98 (465)
T ss_pred             EEEecCccCCCcccccchHHHHHHHHHHHHHHcC-----CcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            5777655  7999999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEec-eeeeecCCC
Q psy6621          79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE-VDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~v~~~~~~  129 (133)
                      +++|||++|...+..|   .|.+.+++++++|+++|++|+++ +.||||+.+
T Consensus        99 l~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~  147 (465)
T TIGR00435        99 MKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK  147 (465)
T ss_pred             HHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc
Confidence            9999999885433223   58899999999999999999998 999999876

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase

Probab=99.96  E-value=8.2e-29  Score=199.06  Aligned_cols=121  Identities=18%  Similarity=0.168  Sum_probs=110.0

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||  +.+||||+|++|.+|+++||+|+.|     ++|.+++|+||||+||+.+|+++|++|+++++.+.+.+.++
T Consensus        39 ~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G-----~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d  113 (411)
T TIGR03447        39 MYVCGITPYDATHLGHAATYLTFDLVNRVWRDAG-----HRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED  113 (411)
T ss_pred             EEEeCCccCCCcccccchHHHHHHHHHHHHHhcC-----CceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            6899988  6899999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEece----eeeecCCC
Q psy6621          79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEV----DYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~v~~~~~~  129 (133)
                      +++|||... +.+.++++  +++.++++|++|+++|+||++..    +||||+..
T Consensus       114 ~~~Lni~~~-d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~  165 (411)
T TIGR03447       114 MEALRVLPP-RDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA  165 (411)
T ss_pred             HHHcCCCCC-CcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc
Confidence            999998632 23445555  37999999999999999999886    89999865

Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.95  E-value=3.9e-28  Score=203.37  Aligned_cols=121  Identities=16%  Similarity=0.058  Sum_probs=112.5

Q ss_pred             CCCCCCCC--cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||.  .+||||+|++|..|+++||+++.|     ++|.+++|+||+|+||+.+|++.|++|.++++.+.+.+.++
T Consensus       251 mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~G-----y~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d  325 (699)
T PRK14535        251 MYVCGMTVYDYCHLGHARVMVVFDMIARWLRECG-----YPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED  325 (699)
T ss_pred             EEecCCcCCCCCcccchhHHHHHHHHHHHHHHcC-----CceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            79999995  799999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621          79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~  129 (133)
                      +++|||..+-   +.+...+|++.+++++++|+++|++|++ .+.||||+.+
T Consensus       326 ~~~LnI~~p~---~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~  374 (699)
T PRK14535        326 ADALGVLRPD---IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE  374 (699)
T ss_pred             HHHcCCCCCc---EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc
Confidence            9999998862   3455568999999999999999999987 4689999874

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.95  E-value=6.4e-28  Score=197.67  Aligned_cols=121  Identities=16%  Similarity=0.099  Sum_probs=110.3

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecc----------cCCCCCHHHHHHHHHcCCChHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPM----------GWDAFGLPAENAAHQHGIDPREWT   68 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~----------G~D~~G~~i~~~a~~~g~~~~~~~   68 (133)
                      ||+|+||  +.+||||+|++|.+|+++||+++.|     ++|.+++          |.|+||++|+.+|++.|++|.+++
T Consensus        26 mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G-----~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a  100 (490)
T PRK14536         26 LYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLG-----YRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA  100 (490)
T ss_pred             EEeeCCccCCCcccchhHHHHHHHHHHHHHHhcC-----CceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence            7999988  5899999999999999999999999     9999998          555559999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621          69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT  129 (133)
Q Consensus        69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (133)
                      +.+.+.+.+++++|||..+-   +.+..++|++.++++|++|+++|++|++.+.||||+.+
T Consensus       101 ~~~~~~f~~d~~~Lni~~~~---~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~  158 (490)
T PRK14536        101 AHYTAAFFRDTARLNIERPS---IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT  158 (490)
T ss_pred             HHHHHHHHHHHHHcCCCCCc---eecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc
Confidence            99999999999999998752   22445789999999999999999999999999999965

>KOG0433|consensus

Probab=99.95  E-value=6.2e-28  Score=201.26  Aligned_cols=120  Identities=24%  Similarity=0.359  Sum_probs=111.5

Q ss_pred             CCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHH-HHHHHc------CCCh-------HHHHHHH
Q psy6621           6 EEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAE-NAAHQH------GIDP-------REWTVGN   71 (133)
Q Consensus         6 png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~-~~a~~~------g~~~-------~~~~~~~   71 (133)
                      +||.||||||+|.|++||+.|++-++|     ..|++++||||||+||| .+|.+.      .++|       +.++.+.
T Consensus        66 anG~lhlghalnkILkdIinr~~laqg-----~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~A  140 (937)
T KOG0433|consen   66 ANGNLHLGHALNKILKDIINRILLAQG-----KSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEA  140 (937)
T ss_pred             cCCCccchHHHHHHHHHHHHHHHHhcC-----ceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHH
Confidence            799999999999999999999999999     99999999999999999 466432      3444       5678999


Q ss_pred             HHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          72 IATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        72 ~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ++.+++.++++||..||+++|.|++|+|...+.++|.+|+++|+||++.+||||+|+++
T Consensus       141 Ik~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSR  199 (937)
T KOG0433|consen  141 IKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSR  199 (937)
T ss_pred             HHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcch
Confidence            99999999999999999999999999999999999999999999999999999999986

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.95  E-value=9.6e-28  Score=196.04  Aligned_cols=121  Identities=11%  Similarity=0.068  Sum_probs=111.3

Q ss_pred             CCCCCCCC--cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC----------CHHHHHHHHHcCCChHHHH
Q psy6621           1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF----------GLPAENAAHQHGIDPREWT   68 (133)
Q Consensus         1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~----------G~~i~~~a~~~g~~~~~~~   68 (133)
                      ||+|+||.  .+||||+|++|.+|+++||++++|     ++|.+++|++|.          |++|+.+|++.|++|.+++
T Consensus        24 mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G-----~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a   98 (481)
T PRK14534         24 VYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLK-----YNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS   98 (481)
T ss_pred             EEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcC-----CceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence            79999995  799999999999999999999999     999997666666          8999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621          69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT  129 (133)
Q Consensus        69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (133)
                      +++.+.+.+++++|||..+.  .++| .++|++.+++++++|+++|++|+..+.||||+.+
T Consensus        99 ~~~~~~f~~d~~~Lni~~~~--~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~  156 (481)
T PRK14534         99 RFFTEAFFDDCKKLNIVYPD--KVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC  156 (481)
T ss_pred             HHHHHHHHHHHHHcCCCCCc--eecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence            99999999999999998873  3344 4689999999999999999999999999999976

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional

Probab=99.95  E-value=6.4e-28  Score=203.58  Aligned_cols=121  Identities=11%  Similarity=0.105  Sum_probs=112.2

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHHcCCC-hHHHHHHHHHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQHGID-PREWTVGNIATMK   76 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~-~~~~~~~~~~~~~   76 (133)
                      ||+|+||  +.+||||||++|..|++.||++ +.|     |+|.|++|+||+|++|+.+|++.|++ +.++++.+.+.|.
T Consensus        63 ~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~G-----y~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~  137 (651)
T PTZ00399         63 WYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFG-----YDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF  137 (651)
T ss_pred             EEEeCCCccCCcccccchHHHHHHHHHHHHHHhcC-----CceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            6999999  5899999999999999999999 999     99999999999999999999999999 9999999999999


Q ss_pred             HHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621          77 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT  129 (133)
Q Consensus        77 ~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (133)
                      +++++|||..+  ..+++. .+|++.+++++++|+++|++|+.+++||||++.
T Consensus       138 ~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~  187 (651)
T PTZ00399        138 EDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA  187 (651)
T ss_pred             HHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh
Confidence            99999999875  223333 579999999999999999999999999999874

>KOG0436|consensus

Probab=99.95  E-value=4.7e-27  Score=186.90  Aligned_cols=122  Identities=19%  Similarity=0.269  Sum_probs=117.1

Q ss_pred             CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      .|||..+||||+++.+++|+++||++++|     ..|.+.+|+|+||++|+.+|+..|.+|.++|+...+.+.+.++.+|
T Consensus        48 fYvNAaPHlGhlYS~llaDai~R~q~lkg-----~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~g  122 (578)
T KOG0436|consen   48 FYVNAAPHLGHLYSTLLADAIARFQRLKG-----KKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAG  122 (578)
T ss_pred             eecCCCcchhHHHHHHHHHHHHHHHhhcC-----CceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhC
Confidence            37899999999999999999999999999     9999999999999999999999999999999999999999999999


Q ss_pred             cccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621          84 CKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY  132 (133)
Q Consensus        84 i~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~  132 (133)
                      |+++  .+++|++|+|...|+++|..+.++|+||++...-|||+++.=|
T Consensus       123 i~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf  169 (578)
T KOG0436|consen  123 IAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETF  169 (578)
T ss_pred             cchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEecccccc
Confidence            9776  8899999999999999999999999999999999999998643

>KOG0432|consensus

Probab=99.94  E-value=1.4e-26  Score=195.92  Aligned_cols=122  Identities=20%  Similarity=0.292  Sum_probs=112.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-----CCC------------hH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-----GID------------PR   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-----g~~------------~~   65 (133)
                      |||+||.||||||.+.++.|+++||.||.|     +.|.+++|+|+.|+.++.-+++.     |.+            .+
T Consensus        83 PPNVTG~LHiGHALt~aiqD~i~R~~rm~G-----~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw  157 (995)
T KOG0432|consen   83 PPNVTGSLHIGHALTVAIQDALARYNRMHG-----YQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVW  157 (995)
T ss_pred             CCCcccccchhHHHHHHHHHHHHHHHHhcC-----CeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHH
Confidence            577889999999999999999999999999     99999999999999998766542     233            37


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT  129 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (133)
                      +|.+++...|.++|++||.++||++++.|++|...++|.+.|.+|+++|+||++.+.|+|||..
T Consensus       158 ~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L  221 (995)
T KOG0432|consen  158 EWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPAL  221 (995)
T ss_pred             HHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhH
Confidence            8899999999999999999999999999999999999999999999999999999999999864

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6

Probab=99.94  E-value=1.6e-26  Score=178.64  Aligned_cols=121  Identities=15%  Similarity=0.085  Sum_probs=103.2

Q ss_pred             CCCCCCCC--cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||.  .+||||+|++|..|++.|+++..|     ++|.+++|++|.+++|..+|++.|+++.++++.+.+++.++
T Consensus        11 ~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g-----~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~d   85 (300)
T PF01406_consen   11 MYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLG-----YDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFED   85 (300)
T ss_dssp             EEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT------EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcC-----CeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            79999995  799999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEec-eeeeecCCC
Q psy6621          79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE-VDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~v~~~~~~  129 (133)
                      |++|||......+..|   ++++.+++++++|+++|++|... +.||||+..
T Consensus        86 m~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~  134 (300)
T PF01406_consen   86 MKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK  134 (300)
T ss_dssp             HHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred             HHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence            9999998753333333   48999999999999999999999 999999873

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=99.94  E-value=3.2e-26  Score=170.35  Aligned_cols=116  Identities=11%  Similarity=0.057  Sum_probs=105.2

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      .|||||+|||||+|+++++|+++|+++++|     ++|.++.++||+|++|+..|++.+. ++++++.+.+.+.+++++|
T Consensus         8 spN~~~~~HiGH~R~~vigD~l~R~l~~~G-----~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~~~L   81 (212)
T cd00671           8 SANPTGPLHVGHLRNAIIGDSLARILEFLG-----YDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETYGRL   81 (212)
T ss_pred             CCCCCCCccccccHHHHHHHHHHHHHHHCC-----CcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999     9999999999999999999976643 8999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLP  128 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~  128 (133)
                      ||++|.  ..++++  +.+.+++++++|.++|++|+.++.+++|+.
T Consensus        82 ~i~~d~--~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~  123 (212)
T cd00671          82 DVRFDV--WFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLT  123 (212)
T ss_pred             CCcCce--ecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEech
Confidence            999872  224444  378899999999999999999999999974

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2.9e-25  Score=179.44  Aligned_cols=121  Identities=16%  Similarity=0.080  Sum_probs=110.4

Q ss_pred             CCCCCCCC--cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||.  .+||||+|++|..|++.||++..|     |.|.|+.+++|.++||..+|.+.|.++.++++.+++++.++
T Consensus        25 mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~G-----y~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D   99 (464)
T COG0215          25 MYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLG-----YKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFED   99 (464)
T ss_pred             EEecCCccCCccccccCcceehHHHHHHHHHHhC-----CeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            89999996  799999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621          79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~  129 (133)
                      +++|||...-..+..|   +|+..+.+++++|+++|++|.. +++||||+..
T Consensus       100 ~~aL~v~~p~~~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~  148 (464)
T COG0215         100 MDALNVLPPDIEPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK  148 (464)
T ss_pred             HHHhCCCCCcccCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEeccc
Confidence            9999995422234444   4889999999999999999998 6899999864

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=99.91  E-value=1.9e-24  Score=161.23  Aligned_cols=87  Identities=10%  Similarity=-0.003  Sum_probs=79.7

Q ss_pred             CCCCC--CCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCT--EEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~--png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+  |+|++||||+++++++|+++||+|++|     ++|.+++|+|+||+||+.+|+++|++|+++++++.+.++++
T Consensus        23 ~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G-----~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~   97 (213)
T cd00672          23 MYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLG-----YKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED   97 (213)
T ss_pred             EEEeCCccCCCcccccchhHHHHHHHHHHHHhcC-----CeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            35555  558999999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCccc-ccCCceec
Q psy6621          79 LQGFGCKF-NWESELAT   94 (133)
Q Consensus        79 l~~lgi~~-d~~~~~~T   94 (133)
                      +++|||+. |  .+.+|
T Consensus        98 ~~~l~i~~~d--~~~rt  112 (213)
T cd00672          98 MKALNVLPPD--VVPRV  112 (213)
T ss_pred             HHHcCCCCCC--cceee
Confidence            99999987 5  44455

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG0434|consensus

Probab=99.90  E-value=1.9e-23  Score=173.99  Aligned_cols=123  Identities=21%  Similarity=0.303  Sum_probs=113.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH-HcCCC----------------hH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH-QHGID----------------PR   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~-~~g~~----------------~~   65 (133)
                      ||.+||.+|-||+.+.+++|+..||..+.|     +.|...+||||||+|+|.... +.|++                .+
T Consensus        46 PPFATGlPHyGHiLa~TIKDiVtRya~~~G-----~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR  120 (1070)
T KOG0434|consen   46 PPFATGLPHYGHILASTIKDIVTRYATQTG-----HHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECR  120 (1070)
T ss_pred             CccccCCCccchhhhhhHHHHHHHHhhccc-----cceeeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHH
Confidence            688999999999999999999999999999     999999999999999998764 35654                36


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      .++-.+..+++++..|||-+.|+.+.|.|+.|.+.+.|+|+|++|+++|++|++-+-..|+..+.
T Consensus       121 ~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~  185 (1070)
T KOG0434|consen  121 KIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACT  185 (1070)
T ss_pred             HHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccC
Confidence            77888999999999999999999999999999999999999999999999999999999987653

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=99.89  E-value=6.1e-23  Score=169.61  Aligned_cols=118  Identities=14%  Similarity=0.115  Sum_probs=106.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      .|||||++||||+|+++++|+++|++++.|     ++|.++.++||+|.++...+.+.+..++++++.+.+.+++++++|
T Consensus       119 spnp~g~lHiGH~R~~iigD~laR~lr~~G-----~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~L  193 (507)
T PRK01611        119 SANPTGPLHVGHLRSAVIGDALARILEFAG-----YDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRL  193 (507)
T ss_pred             CCCCCCCCcCCchHHHHHHHHHHHHHHHcC-----CcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999     999999999999999999888887788999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeE-EeceeeeecC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY-RKEVDYSQNL  127 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy-~~~~~v~~~~  127 (133)
                      ||.+|  ....+.+..+.+.+++++++|.++|++| +.++.++++.
T Consensus       194 gI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~  237 (507)
T PRK01611        194 GVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRL  237 (507)
T ss_pred             CCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEc
Confidence            99997  2234555556678999999999999999 8888898875

>KOG2007|consensus

Probab=99.83  E-value=2.4e-20  Score=151.04  Aligned_cols=121  Identities=12%  Similarity=0.051  Sum_probs=103.4

Q ss_pred             CCCCCCCC--cCcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHH--cCCCh---HHHHHHHH
Q psy6621           1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQ--HGIDP---REWTVGNI   72 (133)
Q Consensus         1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~--~g~~~---~~~~~~~~   72 (133)
                      ||+|+||.  ..||||||+||..|||.|+++ ..|     |+|.+++|++|.+++|..+|++  -+..|   .+.-+.+.
T Consensus        58 wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfg-----y~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e  132 (586)
T KOG2007|consen   58 WYICGPTVYDSSHMGHARSYVSFDILRRILRDYFG-----YDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYE  132 (586)
T ss_pred             EEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcC-----cceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence            69999996  699999999999999999999 999     9999999999999999999962  23334   33333577


Q ss_pred             HHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621          73 ATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT  129 (133)
Q Consensus        73 ~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (133)
                      ++|.++|.+|++-.   ....|.-.+|.+.+..++++++++|++|..+++||||+..
T Consensus       133 ~eF~~DM~~LnvLp---Ptv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k  186 (586)
T KOG2007|consen  133 EEFLQDMAALNVLP---PTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK  186 (586)
T ss_pred             HHHHHHHHHhCCCC---CcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc
Confidence            99999999999965   2344555678999999999999999999999999999853

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=99.76  E-value=2.4e-18  Score=136.58  Aligned_cols=106  Identities=11%  Similarity=0.146  Sum_probs=91.2

Q ss_pred             CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC------------------CHHHHHHHHHcCCChH
Q psy6621           4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF------------------GLPAENAAHQHGIDPR   65 (133)
Q Consensus         4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~------------------G~~i~~~a~~~g~~~~   65 (133)
                      .+|||.+||||++..+.+|+++|++|++|     ++|.+++|+|+|                  |.|+...+...|+.+ 
T Consensus        27 i~psG~~HIG~~~e~i~~D~i~R~lr~~G-----~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~-  100 (353)
T cd00674          27 ISPSGHIHIGNFREVITADLVARALRDLG-----FEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCE-  100 (353)
T ss_pred             CCCCCCcccCccHHHHHHHHHHHHHHHcC-----CCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCH-
Confidence            36999999999999999999999999999     999999999999                  677777777778777 


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY  117 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy  117 (133)
                      ++++.+.+.+++.|+.|||++|+  ...|.....-...+.++..|.+++.|.
T Consensus       101 ~~~d~~~~~f~~~l~~lgi~~d~--~~~T~~y~~g~~~~~i~~~L~~~~~I~  150 (353)
T cd00674         101 SYAEHFERPFEESLEKLGIEVEF--ISQSQMYKSGLYDENILIALEKRDEIM  150 (353)
T ss_pred             HHHHHHHHHHHHHHHHcCCeeee--eecCCchhhchHHHHHHHHHHHCChHH
Confidence            99999999999999999999873  234444444568888888899998875

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=99.75  E-value=5.7e-18  Score=118.64  Aligned_cols=73  Identities=12%  Similarity=0.038  Sum_probs=70.5

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ   80 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~   80 (133)
                      .|+|||++||||+++++++|+++|++|++|     ++|.++.|+||+|.++...|.+.+.+++++++.+.+.++++++
T Consensus         5 ~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G-----~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   77 (143)
T cd00802           5 GITPNGYLHIGHLRTIVTFDFLAQAYRKLG-----YKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE   77 (143)
T ss_pred             CCCCCCCccHhHHHHHHHHHHHHHHHHHcC-----CCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999     9999999999999999999999999999999999999999877

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG1247|consensus

Probab=99.73  E-value=3.4e-18  Score=136.36  Aligned_cols=122  Identities=17%  Similarity=0.168  Sum_probs=113.2

Q ss_pred             CCCCCCcCcchHHHH-HHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           3 DCTEEELTCLGGVVV-KTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         3 ~~~png~lHlGH~~~-~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      .||+|..+|+|++.+ ...+||.|||.+.+|     ++-.+++|+|+.|.++|.+|.++|.+|+++++++.......+.+
T Consensus        22 lpyvnnvphlgNIIg~vlsAdV~Aryc~~r~-----~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~vy~W   96 (567)
T KOG1247|consen   22 LPYVNNVPHLGNIIGSVLSADVFARYCPLRG-----PNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKVVYDW   96 (567)
T ss_pred             cceecccccccceeeEEeehhhhcccccCCC-----CceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHHHHHh
Confidence            378899999999998 566899999999999     99999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF  131 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~  131 (133)
                      ++|++|  .+-+|+.+...+.+|.+|.+|+++|+.-+....+.||..++-
T Consensus        97 f~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~  144 (567)
T KOG1247|consen   97 FKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDT  144 (567)
T ss_pred             hccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcc
Confidence            999887  445688888899999999999999999999999999987753

>KOG0437|consensus

Probab=99.66  E-value=2.8e-16  Score=132.30  Aligned_cols=122  Identities=19%  Similarity=0.281  Sum_probs=106.9

Q ss_pred             CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-------CCC-------------
Q psy6621           4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-------GID-------------   63 (133)
Q Consensus         4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-------g~~-------------   63 (133)
                      ||.||.||+||+.+..-.|+-+-|.|++|     ++|+|++|+.|.|+||-.-|.+.       |.+             
T Consensus        53 PYMNG~LHlGH~FslSK~eFa~~y~rL~G-----k~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~e  127 (1080)
T KOG0437|consen   53 PYMNGRLHLGHAFSLSKVEFASGYERLQG-----KNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEE  127 (1080)
T ss_pred             cccCceeeccceeehhhhHHHHHHHHhcC-----ceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhh
Confidence            57899999999999999999999999999     99999999999999996544321       211             


Q ss_pred             -------------------------------------------------hHHHHHHHHHHHHHHHHhcCcccccCCceec
Q psy6621          64 -------------------------------------------------PREWTVGNIATMKSQLQGFGCKFNWESELAT   94 (133)
Q Consensus        64 -------------------------------------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T   94 (133)
                                                                       |..|...+-....++|+++|...||.+.+.|
T Consensus       128 ev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFIT  207 (1080)
T KOG0437|consen  128 EVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFIT  207 (1080)
T ss_pred             cccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeee
Confidence                                                             2566777778899999999999999988888


Q ss_pred             CC--hhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          95 CD--PKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        95 ~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +|  |.|-.+|.|.|.+|.+.|.|..+++-..|||.+.
T Consensus       208 TDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDg  245 (1080)
T KOG0437|consen  208 TDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDG  245 (1080)
T ss_pred             cccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCC
Confidence            75  8888999999999999999999999999999874

>PRK12451 arginyl-tRNA synthetase; Reviewed

Probab=99.61  E-value=9.6e-15  Score=122.31  Aligned_cols=116  Identities=13%  Similarity=0.036  Sum_probs=93.0

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHH---HHcCC-----------------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAA---HQHGI-----------------   62 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a---~~~g~-----------------   62 (133)
                      -|||+|++|+||+|+.+++|+++|.++..|     ++|....-++|.|.++-..+   ++.|.                 
T Consensus       121 SpNp~kplHvGH~R~aiiGd~l~ril~~~G-----~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~  195 (562)
T PRK12451        121 SPNIAKPFSMGHLRSTMIGNALKHIAEKCG-----YEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYV  195 (562)
T ss_pred             CCCCCCCcccchhhhHHHHHHHHHHHHHCC-----CCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHHHHHH
Confidence            389999999999999999999999999999     99999999999998774332   11110                 


Q ss_pred             --------------------------C------hHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHH
Q psy6621          63 --------------------------D------PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDL  110 (133)
Q Consensus        63 --------------------------~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L  110 (133)
                                                +      .+.+++...+.+++++++|||.+||..    .+..|.+.+.+++.+|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~----~es~~~~~~~~v~~~L  271 (562)
T PRK12451        196 QFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ----GEAFYNDLMEDFIGIL  271 (562)
T ss_pred             HHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec----chHhhhhhHHHHHHHH
Confidence                                      0      123466778899999999999999532    3334666789999999


Q ss_pred             HHCCCeEEeceeeeecC
Q psy6621         111 YHAGLVYRKEVDYSQNL  127 (133)
Q Consensus       111 ~~~G~iy~~~~~v~~~~  127 (133)
                      .++|++|++++.++.+.
T Consensus       272 ~~~g~~~e~dGa~~~~~  288 (562)
T PRK12451        272 EEHDLLEESEGALVVNL  288 (562)
T ss_pred             HHCCCEEecCCeEEEEe
Confidence            99999999998887654

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6

Probab=99.58  E-value=7.2e-15  Score=116.96  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=87.4

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH-------H-c--------------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH-------Q-H--------------   60 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~-------~-~--------------   60 (133)
                      -|||+|++||||+|+.+++|+|+|.++..|     ++|....-++|.|.++-..+.       + .              
T Consensus        28 SpNp~kplHvGHlR~~iiGd~laril~~~G-----~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~  102 (354)
T PF00750_consen   28 SPNPTKPLHVGHLRNTIIGDSLARILEAAG-----YDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHLEDLYV  102 (354)
T ss_dssp             --BTTSS-BHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHHHHHHH
T ss_pred             CCCCCCCCcCCcchhhhhhHHHHHHHHHcC-----CeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccchhhhhh
Confidence            389999999999999999999999999999     999999999999988743321       0 0              


Q ss_pred             ---------CC------C------------------hHHH-HHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHH
Q psy6621          61 ---------GI------D------------------PREW-TVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQA  105 (133)
Q Consensus        61 ---------g~------~------------------~~~~-~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~  105 (133)
                               ..      .                  ..++ .....+.++++++++++.+| |..+   .+..+.+.+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~~~~v~~  179 (354)
T PF00750_consen  103 GANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE---SESFYSGKVDE  179 (354)
T ss_dssp             HHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH---CHHHHTTHHHH
T ss_pred             hhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc---chhhhhhHHHH
Confidence                     00      0                  0122 33377889999999999998 3222   23345567899


Q ss_pred             HHHHHHHCCCeEEeceeeeecCC
Q psy6621         106 LFLDLYHAGLVYRKEVDYSQNLP  128 (133)
Q Consensus       106 ~f~~L~~~G~iy~~~~~v~~~~~  128 (133)
                      ++.+|.++|++|+.++.++.+..
T Consensus       180 vl~~L~e~g~~~~~dGa~~i~~~  202 (354)
T PF00750_consen  180 VLERLKEKGLLYESDGALWIDLT  202 (354)
T ss_dssp             HHHHHHCTTTEEEETTEEEEEGC
T ss_pred             HHHHHHhCCcEEecCCcEEEech
Confidence            99999999999999999888754

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.

>TIGR00456 argS arginyl-tRNA synthetase

Probab=99.55  E-value=4.4e-14  Score=118.43  Aligned_cols=116  Identities=15%  Similarity=0.118  Sum_probs=89.4

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH---HcC--------C---------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH---QHG--------I---------   62 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~---~~g--------~---------   62 (133)
                      .|||+|++||||+|+.+++|+++|+++..|     ++|....-+.|.|.++-..+.   +.+        .         
T Consensus       120 spn~~~~~hiGh~r~~~~gd~l~r~~~~~g-----~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (566)
T TIGR00456       120 SANPAGPLHIGHLRNAIIGDSLARILEFLG-----YDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGF  194 (566)
T ss_pred             CCCCCCCCchhhhHHHHHHHHHHHHHHHCC-----CCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHH
Confidence            478999999999999999999999999999     999999999998877643321   100        0         


Q ss_pred             ----------------------------Ch------HHHHHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHHHH
Q psy6621          63 ----------------------------DP------REWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQALF  107 (133)
Q Consensus        63 ----------------------------~~------~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~~f  107 (133)
                                                  ++      +..++...+.+++++++|||.+| |..+-..   .+...+..++
T Consensus       195 Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~---~~~~~~~~v~  271 (566)
T TIGR00456       195 YVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGES---VKNGMVPKVL  271 (566)
T ss_pred             HHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccc---cccccHHHHH
Confidence                                        01      34566788999999999999998 4322111   2345688999


Q ss_pred             HHHHHCCCeEEeceeeeecC
Q psy6621         108 LDLYHAGLVYRKEVDYSQNL  127 (133)
Q Consensus       108 ~~L~~~G~iy~~~~~v~~~~  127 (133)
                      .+|.++|++|++ +.++.+.
T Consensus       272 ~~L~~~g~~~~~-Ga~~~~~  290 (566)
T TIGR00456       272 EDLKEKGLVVED-GALWLDL  290 (566)
T ss_pred             HHHHHCCCEEEc-CCEEEEc
Confidence            999999999988 7777654

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=4e-14  Score=118.57  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=89.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH---H-----c--------------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH---Q-----H--------------   60 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~---~-----~--------------   60 (133)
                      -|||||++||||+|+.+++|+++|.++..|     |+|....-++|.|.++-..+.   +     .              
T Consensus       125 SaNptkplHiGHlR~aiiGDsLaril~~~G-----y~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y  199 (577)
T COG0018         125 SANPTGPLHIGHLRNAIIGDSLARILEFLG-----YDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYY  199 (577)
T ss_pred             CCCCCCCcccchhhhhHHHHHHHHHHHHcC-----CCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHH
Confidence            389999999999999999999999999999     999999999999987743321   0     0              


Q ss_pred             -----------CC--C-------------h-----HHHHHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHHHHH
Q psy6621          61 -----------GI--D-------------P-----REWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQALFL  108 (133)
Q Consensus        61 -----------g~--~-------------~-----~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~~f~  108 (133)
                                 +.  .             +     +++++.....+++++.+|||.+| |.   ...+.-+...+..++.
T Consensus       200 ~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~---~E~e~~~~~~~~~vv~  276 (577)
T COG0018         200 VKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYD---SEGESFYNGKVEKVVE  276 (577)
T ss_pred             HHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceee---ccchhhhcccHHHHHH
Confidence                       11  0             0     12677788999999999999998 31   1122223447899999


Q ss_pred             HHHHCCCeEEeceeeeec
Q psy6621         109 DLYHAGLVYRKEVDYSQN  126 (133)
Q Consensus       109 ~L~~~G~iy~~~~~v~~~  126 (133)
                      .|.++|++|+.++....|
T Consensus       277 ~L~~~~~~~e~~GA~~vd  294 (577)
T COG0018         277 DLEEKGLLYEDDGALVVD  294 (577)
T ss_pred             HHHhcCCEeeeCCeEEEe
Confidence            999999999977776444

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=99.53  E-value=7.3e-15  Score=121.78  Aligned_cols=106  Identities=13%  Similarity=0.156  Sum_probs=80.6

Q ss_pred             CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCC--------HHH-HHHHHHcCCC----------h
Q psy6621           4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFG--------LPA-ENAAHQHGID----------P   64 (133)
Q Consensus         4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G--------~~i-~~~a~~~g~~----------~   64 (133)
                      .+|||.+||||++..+.+|+++|++|..|     ++|.+++|+|+||        +|. +..++..|.+          +
T Consensus        31 ~~psG~~HiG~~~e~~~~d~v~r~lr~~G-----~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~~  105 (510)
T PRK00750         31 IGPSGLPHIGNFREVARTDMVRRALRDLG-----IKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGCH  105 (510)
T ss_pred             CCCCCCcccccccchhhHHHHHHHHHHcC-----CcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCCc
Confidence            37999999999999999999999999999     9999999999998        444 3345555554          7


Q ss_pred             HHHHHHHHHHHHHHHHhcCcccccCCceecCC-hhHHHHHHHHHHHHHHCCCeE
Q psy6621          65 REWTVGNIATMKSQLQGFGCKFNWESELATCD-PKYYKWTQALFLDLYHAGLVY  117 (133)
Q Consensus        65 ~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~-~~~~~~v~~~f~~L~~~G~iy  117 (133)
                      ..+++.+.+.+++.++.+||++|+   +++++ .......+.+...|.+++.|.
T Consensus       106 ~~~~~~~~~~~~~~~~~~gi~~d~---~~~t~~y~~g~~~~~i~~~l~~~~~i~  156 (510)
T PRK00750        106 ESYAEHFNAPLREFLDRFGIEYEF---ISATECYKSGRYDEAILTALENRDEIM  156 (510)
T ss_pred             hHHHHHHHHHHHHHHHHcCCceEE---EehhhhhccCchHHHHHHHHHhHHHHH
Confidence            999999999999999999998873   23332 222234444445555555443

>PLN02286 arginine-tRNA ligase

Probab=99.49  E-value=1.4e-13  Score=115.61  Aligned_cols=115  Identities=10%  Similarity=0.060  Sum_probs=91.0

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH---H-cC-------C---------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH---Q-HG-------I---------   62 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~---~-~g-------~---------   62 (133)
                      -|||+|++|+||+|+.+++|+|+|.++..|     ++|....-++|.|.++-..+.   + .+       .         
T Consensus       125 SpNp~kplHvGHlRsaiiGdsLaril~~~G-----~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~Y  199 (576)
T PLN02286        125 SPNIAKEMHVGHLRSTIIGDTLARMLEFSG-----VEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFY  199 (576)
T ss_pred             CCCCCCCCccccccchhhHHHHHHHHHHcC-----CceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHHHHHH
Confidence            389999999999999999999999999999     999999999999987743321   1 00       0         


Q ss_pred             ---------Ch------------------------HHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHH
Q psy6621          63 ---------DP------------------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD  109 (133)
Q Consensus        63 ---------~~------------------------~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~  109 (133)
                               ++                        +++++.....+.+++.+|||.+|.     ..+..|.+.+.+++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~-----~ges~y~~~~~~vi~~  274 (576)
T PLN02286        200 KAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEE-----KGESFYNPYIPGVIEE  274 (576)
T ss_pred             HHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeee-----cCchhhhhhHHHHHHH
Confidence                     00                        244566678899999999999983     1333466667999999


Q ss_pred             HHHCCCeEEeceeeeecC
Q psy6621         110 LYHAGLVYRKEVDYSQNL  127 (133)
Q Consensus       110 L~~~G~iy~~~~~v~~~~  127 (133)
                      |.++|++|+.++.++.+.
T Consensus       275 L~~~g~~~e~dGa~~v~l  292 (576)
T PLN02286        275 LESKGLVVESDGARVIFV  292 (576)
T ss_pred             HHHCCCEEeeCCceEeec
Confidence            999999999988877554

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=99.49  E-value=8.4e-14  Score=105.43  Aligned_cols=92  Identities=11%  Similarity=0.087  Sum_probs=73.6

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|+|||.+||||++++++.++++|     +     +.+.++..+||.+.+..           ....+..+.|.++|++
T Consensus         6 faPsPtG~lHiG~~rtal~~~l~Ar-----~-----~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~w   64 (240)
T cd09287           6 FAPNPNGPLHLGHARAAILNGEYAK-----M-----YGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEW   64 (240)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHH
Confidence            7899999999999999999999999     5     66678888888765442           1344556669999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+  +|+..+  ...++.+..+++.++|.++|.+|.
T Consensus        65 LGl--~~d~~~--~qS~r~~~y~~~~~~Li~~G~aY~   97 (240)
T cd09287          65 LGV--KWDEVV--IASDRIELYYEYARKLIEMGGAYV   97 (240)
T ss_pred             cCC--CCCCcc--chhccHHHHHHHHHHHHHcCCccc
Confidence            999  454433  334578889999999999999995

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=99.37  E-value=1.5e-12  Score=108.73  Aligned_cols=92  Identities=10%  Similarity=0.077  Sum_probs=72.5

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|+|||+||||||+++++.+.+||  ...|        .++.-+||.+.++           .+...++.+.|+++|++
T Consensus       106 FaPsPtG~LHIGharaalln~~~Ar--~~~G--------~~iLRidDTDpk~-----------~R~~~e~~~~I~edL~w  164 (567)
T PRK04156        106 FAPNPSGPLHLGHARAAILNDEYAK--MYGG--------KFILRFEDTDPRT-----------KRPDPEAYDMILEDLKW  164 (567)
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH--HcCC--------EEEEeEccCCCCc-----------ccchHHHHHHHHHHHHH
Confidence            7899999999999999999999999  4444        5666666664433           22345667999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+.  |+..+  ....+.+...+...+|+++|++|.
T Consensus       165 LGl~--wD~~~--~qSdr~~~y~~~a~~Li~~G~AY~  197 (567)
T PRK04156        165 LGVK--WDEVV--IQSDRLEIYYEYARKLIEMGGAYV  197 (567)
T ss_pred             cCCC--CCCcc--CcccCHHHHHHHHHHHHHcCCCcc
Confidence            9994  44443  344578999999999999999996

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase

Probab=99.33  E-value=4.5e-12  Score=95.86  Aligned_cols=90  Identities=11%  Similarity=0.097  Sum_probs=73.1

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||+||++++++.-.+||  ...|     .-++                +-+++++.....++.+.|.++|++
T Consensus         6 FAPsPtG~lHlG~~~~al~~~l~Ar--~~~G-----~~iL----------------RieDtD~~R~~~~~~~~I~~dL~w   62 (238)
T cd00807           6 FPPEPNGYLHIGHAKAILLNFGYAK--KYGG-----RCNL----------------RFDDTNPEKEEEEYVDSIKEDVKW   62 (238)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEE----------------EecCCCCcccchHHHHHHHHHHHH
Confidence            7899999999999999999999998  6677     3332                224566777778999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  ..  ....++.+..++...+|.++|.+|.
T Consensus        63 lGl~wD--~~--~~QS~r~~~Y~~~~~~L~~~g~aY~   95 (238)
T cd00807          63 LGIKPY--KV--TYASDYFDQLYEYAEQLIKKGKAYV   95 (238)
T ss_pred             cCCCCC--Cc--eecccCHHHHHHHHHHHHHcCCeec
Confidence            999555  33  3344567899999999999999997

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=99.33  E-value=3e-12  Score=106.88  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=72.5

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++.+.+||  ...|        .++.-+||.             +|.+-..++.+.|.++|++
T Consensus        98 FaPsPtG~LHiGharaalln~~~Ar--~~~G--------~~iLRidDT-------------Dp~R~~~e~~~~I~edL~w  154 (560)
T TIGR00463        98 FAPNPSGPLHIGHARAAILNQYFAK--KYKG--------KLIIRFDDT-------------DPRRVKPEAYDMILEDLDW  154 (560)
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH--hcCC--------EEEEEeCcC-------------CcccccHHHHHHHHHHHHH
Confidence            7999999999999999999999998  5556        344445554             4444556789999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+..|  ..  +....|.+...++..+|+++|.+|.-
T Consensus       155 LGi~~d--~~--~~qSd~~~~y~~~a~~Li~~G~AY~C  188 (560)
T TIGR00463       155 LGVKGD--EV--VYQSDRIEEYYDYCRKLIEMGKAYVC  188 (560)
T ss_pred             cCCCCC--cc--ccccccHHHHHHHHHHHHHcCCceee
Confidence            999754  43  33445889999999999999999963

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>PLN03233 putative glutamate-tRNA ligase; Provisional

Probab=99.31  E-value=4e-12  Score=105.27  Aligned_cols=91  Identities=12%  Similarity=0.123  Sum_probs=74.3

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++...+||  ...|     .-++.                -.+++|.+...++.+.|.++|++
T Consensus        16 FAPsPtG~LHiGharaAlln~l~Ar--~~gG-----~~iLR----------------iEDTDp~R~~~e~~~~I~~dL~W   72 (523)
T PLN03233         16 FPPEPSGYLHIGHAKAALLNDYYAR--RYKG-----RLILR----------------FDDTNPSKEKAEFEESIIEDLGK   72 (523)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ECCCCCCccchHHHHHHHHHHHH
Confidence            7999999999999999999999998  6677     33322                23567777788999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+..|  ..+  ....+.+...+...+|+++|.+|.-
T Consensus        73 LGl~wD--~~~--~qSdr~~~y~~~a~~Li~~G~AY~C  106 (523)
T PLN03233         73 IEIKPD--SVS--FTSDYFEPIRCYAIILIEEGLAYMD  106 (523)
T ss_pred             hCCCCC--CCc--cccccHHHHHHHHHHHHHcCCeEec
Confidence            999654  433  3345788999999999999999964

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=4.3e-12  Score=104.17  Aligned_cols=92  Identities=12%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||||++++.-.+||  ...|     .-++.                -++++|..-..++.+.|.++|++
T Consensus        14 FAPsPtG~LHiG~artAl~N~~~Ar--~~~G-----~fiLR----------------iEDTD~~R~~~e~~~~I~~~L~W   70 (472)
T COG0008          14 FAPSPTGYLHIGHARTALLNYLYAR--KYGG-----KFILR----------------IEDTDPERETPEAEDAILEDLEW   70 (472)
T ss_pred             ECcCCCCccchHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ecCCCCCCCCHHHHHHHHHHHHh
Confidence            7999999999999999999999999  7778     44422                24567777778999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+  +|+.. ...+.++.+...+...+|+++|.+|.-
T Consensus        71 LGl--~wde~-~~~QS~r~~~Y~~~~~~Li~~G~AY~c  105 (472)
T COG0008          71 LGL--DWDEG-PYYQSERFDIYYEYAEKLIEKGKAYVC  105 (472)
T ss_pred             cCC--CCCCc-eeehhhhHHHHHHHHHHHHHCCCeEEe
Confidence            998  55453 233345788999999999999999963

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=99.31  E-value=4.1e-12  Score=97.98  Aligned_cols=91  Identities=19%  Similarity=0.262  Sum_probs=71.1

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++.-.+||  +..|     .-++.+                +++++.....++.+.|.++|++
T Consensus         5 FAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG-----~~iLRi----------------EDtD~~R~~~~~~~~I~~dL~w   61 (272)
T TIGR03838         5 FAPSPSGPLHFGSLVAALGSYLDAR--AHGG-----RWLVRI----------------EDLDPPREVPGAADDILRTLEA   61 (272)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEe----------------CcCCCCCCChHHHHHHHHHHHH
Confidence            7899999999999999999999999  6677     433222                2445555667889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  .. .....++.+...+...+|.++|.+|.
T Consensus        62 LGl~wD--e~-~~~QS~r~~~Y~~~~~~L~~~G~aY~   95 (272)
T TIGR03838        62 YGLHWD--GE-VVYQSQRHALYQAALDRLLAAGLAYP   95 (272)
T ss_pred             cCCCCC--CC-eeeeeCCHHHHHHHHHHHHHcCCEEe
Confidence            999554  32 12233467889999999999999994

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=99.30  E-value=2.6e-12  Score=106.64  Aligned_cols=78  Identities=13%  Similarity=0.111  Sum_probs=70.1

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC------------------CHHHHHHHHHcCCChHH
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF------------------GLPAENAAHQHGIDPRE   66 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~------------------G~~i~~~a~~~g~~~~~   66 (133)
                      +|||.+||||++..+.+|+++|++|++|     .+|.+++++|++                  |.|+.......|.. ..
T Consensus        27 ~psG~~HiG~~~e~~~~d~v~r~~r~~g-----~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~-~s  100 (515)
T TIGR00467        27 TPSGHIHIGNFREVITADAIARALRDSG-----SEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK-TS  100 (515)
T ss_pred             CCCCCccccchhhhhHHHHHHHHHHHcC-----CCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc-HH
Confidence            5999999999999999999999999999     999999999999                  66666555566765 89


Q ss_pred             HHHHHHHHHHHHHHhcCccccc
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNW   88 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~   88 (133)
                      +++.+...+.+.|+.|||.+.+
T Consensus       101 ~~~h~~~~~~~~l~~~gi~~e~  122 (515)
T TIGR00467       101 YAEHFLIPFLESLPVLGINPEF  122 (515)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEE
Confidence            9999999999999999997753

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>PTZ00402 glutamyl-tRNA synthetase; Provisional

Probab=99.29  E-value=6.8e-12  Score=105.09  Aligned_cols=91  Identities=14%  Similarity=0.205  Sum_probs=73.5

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++...+||  ...|     .-++                +-.+++|.+...++.+.|.++|++
T Consensus        57 FAPsPtGyLHIGharaAllN~l~Ar--~~gG-----~~iL----------------RiEDTDp~R~~~e~~d~IleDL~W  113 (601)
T PTZ00402         57 FPPEASGFLHIGHAKAALINSMLAD--KYKG-----KLVF----------------RFDDTNPSKEKEHFEQAILDDLAT  113 (601)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEE----------------EEcCCCCcccCHHHHHHHHHHHHH
Confidence            7999999999999999999999999  6677     3332                124567777888999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+  +|+.. .+....|.+...+...+|+++|++|.
T Consensus       114 LGl--~wDe~-~~~QSdr~d~y~e~a~~Li~~G~AY~  147 (601)
T PTZ00402        114 LGV--SWDVG-PTYSSDYMDLMYEKAEELIKKGLAYC  147 (601)
T ss_pred             CCC--CCCCc-eeeccccHHHHHHHHHHHHHcCCEEE
Confidence            999  45442 22334578999999999999999994

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6

Probab=99.27  E-value=6.4e-12  Score=98.73  Aligned_cols=91  Identities=11%  Similarity=0.089  Sum_probs=66.8

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++.-.+||  +..|     .-++.+                +++++.....++.+.+.++|++
T Consensus         6 FAPsPtG~lHiG~~r~al~n~~~Ar--~~~G-----~~iLRi----------------eDtD~~R~~~~~~~~i~~~L~w   62 (314)
T PF00749_consen    6 FAPSPTGYLHIGHARTALLNYLFAR--KYGG-----KFILRI----------------EDTDPERCRPEFYDAILEDLRW   62 (314)
T ss_dssp             E---SSSS-BHHHHHHHHHHHHHHH--HTTS-----EEEEEE----------------ETSSTTTCHHHHHHHHHHHHHH
T ss_pred             eCCCCCCCcccchhHHHHHHHHHHh--ccCc-----eEEEec----------------cccccccchhhHHHHHHhheeE
Confidence            7899999999999999999999999  7777     443222                3455566667889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..| ..++.  ...+.+..++..++|+++|.+|.
T Consensus        63 lGl~~D-~~~~~--QS~r~~~Y~~~~~~L~~~g~aY~   96 (314)
T PF00749_consen   63 LGLEWD-YGPYY--QSDRLEIYQEAAEKLIDKGKAYP   96 (314)
T ss_dssp             HT---S-TCEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             EEEecC-CeEEe--HHHHHHHHHHHHHHHhhcCCCcc
Confidence            999665 23333  34577899999999999999996

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....

>PLN02907 glutamate-tRNA ligase

Probab=99.26  E-value=1.1e-11  Score=106.45  Aligned_cols=90  Identities=10%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++...+||  +..|     .-++.                -.+++|.+...++.+.|.++|++
T Consensus       218 FaPsPtG~LHiG~ar~al~n~~~Ar--~~~G-----~~iLR----------------~eDTdp~r~~~e~~~~I~~dl~w  274 (722)
T PLN02907        218 FPPEPSGYLHIGHAKAALLNQYFAR--RYKG-----KLIVR----------------FDDTNPSKESDEFVENILKDIET  274 (722)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ecCCCCCcCChHHHHHHHHHHHH
Confidence            7999999999999999999999999  6677     43321                23566777778999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  ..+  ....|.+...+...+|+++|.+|.
T Consensus       275 LG~~~d--~~~--~qS~r~~~y~~~a~~Li~~G~aY~  307 (722)
T PLN02907        275 LGIKYD--AVT--YTSDYFPQLMEMAEKLIKEGKAYV  307 (722)
T ss_pred             cCCCCC--Ccc--cccccHHHHHHHHHHHHHcCCeee
Confidence            999654  443  344578899999999999999996

>TIGR00440 glnS glutaminyl-tRNA synthetase

Probab=99.24  E-value=2e-11  Score=101.17  Aligned_cols=92  Identities=12%  Similarity=0.153  Sum_probs=72.1

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++...+||  +..|     .-++.   +             .+++|.+-..++.+.|.++|++
T Consensus         5 FaPsPtG~LHiG~ar~al~n~~~A~--~~~G-----~~iLR---i-------------eDTd~~r~~~e~~~~I~~dL~w   61 (522)
T TIGR00440         5 FPPEPNGYLHIGHAKSICLNFGYAK--YYNG-----TCNLR---F-------------DDTNPVKEDPEYVESIKRDVEW   61 (522)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE---E-------------cCCCcccCChHHHHHHHHHHHH
Confidence            7999999999999999999999999  6677     33322   2             3456667777899999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+..| +..+.  ...+.+...+...+|+++|.+|.-
T Consensus        62 LG~~~d-~~~~~--qS~~~~~~~~~a~~Li~~G~AY~c   96 (522)
T TIGR00440        62 LGFKWE-GKIRY--SSDYFDELYRYAEELIKKGLAYVD   96 (522)
T ss_pred             cCCCCC-CCceE--ccccHHHHHHHHHHHHHcCCEEee
Confidence            999654 22222  344677777888999999999974

This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=99.24  E-value=1.9e-11  Score=95.32  Aligned_cols=91  Identities=19%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++.-.+||  ...|     .-++.+                +++++.....++.+.|.++|++
T Consensus        10 FAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G-----~~iLRi----------------EDtD~~R~~~~~~~~I~~dL~w   66 (299)
T PRK05710         10 FAPSPSGPLHFGSLVAALGSWLDAR--AHGG-----RWLLRI----------------EDIDPPREVPGAADAILADLEW   66 (299)
T ss_pred             eCcCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEE----------------CcCCCCccchHHHHHHHHHHHH
Confidence            7899999999999999999999998  5667     333222                2455566667889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|- .++.  ..++.+..++...+|.++|.+|.
T Consensus        67 lGl~wDe-~~~~--QS~r~~~Y~~~~~~L~~~G~aY~  100 (299)
T PRK05710         67 LGLHWDG-PVLY--QSQRHDAYRAALDRLRAQGLVYP  100 (299)
T ss_pred             CCCCCCC-CceE--eeccHHHHHHHHHHHHHCCCcee
Confidence            9995441 2333  33467889999999999999994

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional

Probab=99.23  E-value=2.4e-11  Score=98.93  Aligned_cols=90  Identities=10%  Similarity=0.101  Sum_probs=72.0

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+|++++.-.+||  +..|     .-++.+                +++++.....++.+.|.++|++
T Consensus         4 FAPSPTG~LHiG~artAL~n~l~Ar--~~gG-----~fiLRi----------------EDTD~~R~~~e~~~~I~~~L~W   60 (433)
T PRK12410          4 FAPSPTGDMHIGNLRAAIFNYIVAK--QQNE-----DFLIRI----------------EDTDKERNIEGKDKEILEILNL   60 (433)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEe----------------CcCCCCcCChHHHHHHHHHHHH
Confidence            7899999999999999999999999  7777     444322                3445556667889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..  +.++..  .++.+...+...+|+++|.+|.
T Consensus        61 lGl~w--De~y~Q--SeR~~~Y~~~a~~Li~~G~AY~   93 (433)
T PRK12410         61 FGISW--DKLVYQ--SENLKFHRQMAEKLLSEKKAFA   93 (433)
T ss_pred             cCCCC--CCCeeh--hccHHHHHHHHHHHHHcCCeee
Confidence            99954  455443  3467888999999999999995

>PRK05347 glutaminyl-tRNA synthetase; Provisional

Probab=99.22  E-value=2.5e-11  Score=101.00  Aligned_cols=92  Identities=9%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++...+||  +..|     .-++.                -.+++|.....++.+.|.++|++
T Consensus        34 FaPsPtG~LHiG~ar~al~n~~~Ar--~~~G-----~~iLR----------------ieDTd~~r~~~e~~~~I~~dL~w   90 (554)
T PRK05347         34 FPPEPNGYLHIGHAKSICLNFGLAQ--DYGG-----KCNLR----------------FDDTNPEKEDQEYVDSIKEDVRW   90 (554)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ECCCCCCcCChHHHHHHHHHHHH
Confidence            7999999999999999999999999  6677     33321                23556777778999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+..| +..+.  ...+.+...+...+|+++|.+|.-
T Consensus        91 LGi~~d-~~~~~--qS~r~~~~y~~a~~Li~~G~AY~c  125 (554)
T PRK05347         91 LGFDWS-GELRY--ASDYFDQLYEYAVELIKKGKAYVD  125 (554)
T ss_pred             cCCCCC-CCcee--eecCHHHHHHHHHHHHHcCCEeeC
Confidence            999654 23333  334667677777899999999973

>PTZ00437 glutaminyl-tRNA synthetase; Provisional

Probab=99.22  E-value=2.9e-11  Score=100.79  Aligned_cols=91  Identities=11%  Similarity=0.127  Sum_probs=72.0

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++...+||  +..|     .-++.                -.+++|.+...++.+.|.++|++
T Consensus        56 FaPsPtG~LHiGharaalln~~~Ar--~~gG-----~~iLR----------------iEDTDp~r~~~e~~~~I~~dL~w  112 (574)
T PTZ00437         56 FPPEPNGFLHIGHAKSMNLNFGSAR--AHGG-----KCYLR----------------YDDTNPETEEQVYIDAIMEMVKW  112 (574)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ECCCCccccChHHHHHHHHHHHH
Confidence            7999999999999999999999999  6677     33322                23456777778999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+..|  ..+  ....|.+...+...+|+++|.+|.-
T Consensus       113 LGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~C  146 (574)
T PTZ00437        113 MGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYVD  146 (574)
T ss_pred             cCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEEc
Confidence            999655  332  3345677677888899999999963

>PRK12558 glutamyl-tRNA synthetase; Provisional

Probab=99.21  E-value=4e-11  Score=97.94  Aligned_cols=90  Identities=11%  Similarity=0.091  Sum_probs=70.1

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+|+++..-.+||  +..|     .-+   .=+||             +++....++..+.|+++|++
T Consensus         7 FAPSPTG~lHiG~artAL~n~l~Ar--~~gG-----~fi---LRIED-------------TD~~Rs~~~~~~~I~e~L~w   63 (445)
T PRK12558          7 FAPSPTGYLHVGNARTALLNWLYAR--KHGG-----KFI---LRIDD-------------TDLERSKQEYADAIAEDLKW   63 (445)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEE---EEecc-------------CCcccchHHHHHHHHHHHHH
Confidence            7899999999999999999999998  6677     333   23333             34455567889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+.+|  ..  ..+.+..+.+++++.+|.++|++|.
T Consensus        64 LGI~~D--e~--y~QSer~~~y~~~~e~L~e~G~AY~   96 (445)
T PRK12558         64 LGINWD--RT--FRQSDRFDRYDEAAEKLKAAGRLYP   96 (445)
T ss_pred             cCCCCC--cc--ccHHHHHHHHHHHHHHHHHCCCEEE
Confidence            999776  22  2233445788999999999999995

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=99.19  E-value=5e-11  Score=98.20  Aligned_cols=91  Identities=12%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++.-.+||  ...|     .-++.   +             +++++.....++.+.|.++|++
T Consensus         6 fAPsPtG~lHiG~~rtal~n~l~Ar--~~~G-----~~iLR---i-------------eDtD~~R~~~~~~~~i~~~L~w   62 (470)
T TIGR00464         6 FAPSPTGYLHIGGARTALFNYLFAK--HTGG-----EFILR---I-------------EDTDLERNIEEAEEAILEGLKW   62 (470)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEE---e-------------CcCCCccCChHHHHHHHHHHHH
Confidence            7899999999999999999999999  6677     33322   2             3455566677889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..| +.++..  .++.+..+++..+|+++|.+|.
T Consensus        63 lGl~~d-e~~~~Q--S~r~~~y~~~~~~L~~~g~aY~   96 (470)
T TIGR00464        63 LGISWD-EGPYYQ--SQRLDIYKKYAKELLEEGLAYR   96 (470)
T ss_pred             CCCCCC-CCeeeh--hCCHHHHHHHHHHHHHcCCEEe
Confidence            999544 134333  3456788899999999999995

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=99.17  E-value=6.5e-11  Score=89.29  Aligned_cols=87  Identities=11%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||+||+||++++++.-.+||  +..|     .-++.   +             +++++.....++.+.|.++|++
T Consensus         6 FAPsPtG~lHlG~~r~al~n~l~Ar--~~~G-----~~iLR---i-------------eDtD~~R~~~~~~~~I~~dL~w   62 (230)
T cd00418           6 FAPSPTGYLHIGHARTALFNFAFAR--KYGG-----KFILR---I-------------EDTDPERSRPEYVESILEDLKW   62 (230)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----eEEEE---e-------------CcCCCCCCChHHHHHHHHHHHH
Confidence            7899999999999999999999999  6677     33322   2             3455566667889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCC
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAG  114 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G  114 (133)
                      ||+..|  .. .....++.+..++...+|.++|
T Consensus        63 lGl~wd--~~-~~~QS~r~~~y~~~~~~L~~~g   92 (230)
T cd00418          63 LGLDWD--EG-PYRQSDRFDLYRAYAEELIKKG   92 (230)
T ss_pred             cCCCCC--CC-eeehhcCHHHHHHHHHHHHHcC
Confidence            999554  42 1223446788899999999999

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

Probab=99.14  E-value=5.9e-11  Score=102.23  Aligned_cols=92  Identities=12%  Similarity=0.167  Sum_probs=73.3

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++...+||  +..|     .-++.                -.+++|.....++.+.|.++|++
T Consensus        36 FaPsPtG~lHiGhar~alln~~~A~--~~~G-----~~~LR----------------~eDTd~~r~~~e~~~~I~~dl~w   92 (771)
T PRK14703         36 FPPEPNGYLHIGHAKSILLNFGIAR--DYGG-----RCHLR----------------MDDTNPETEDTEYVEAIKDDVRW   92 (771)
T ss_pred             eCcCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------eCCCCCCcCChHHHHHHHHHHHH
Confidence            7999999999999999999999998  6677     33321                23556777778999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+..|  .. .+....|.+...+...+|+++|.+|.-
T Consensus        93 LG~~wd--~~-~~~qS~~~~~y~~~a~~Li~~G~aY~c  127 (771)
T PRK14703         93 LGFDWG--EH-LYYASDYFERMYAYAEQLIKMGLAYVD  127 (771)
T ss_pred             cCCCCC--CC-ceEeecCHHHHHHHHHHHHHcCCcccC
Confidence            999554  22 233345788999999999999999963

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=99.12  E-value=1.6e-10  Score=95.69  Aligned_cols=91  Identities=15%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+|++++.-.+||  +..|     .-++.+                +++++.....++.+.+.++|++
T Consensus         9 FAPSPTG~lHiG~artAL~n~l~Ar--~~gG-----~fiLRI----------------EDTD~~R~~~~~~~~i~~~L~W   65 (513)
T PRK14895          9 FAPSPTGFLHIGSARTALFNYLFAR--HHNG-----KFLLRI----------------EDTDKERSTKEAVEAIFSGLKW   65 (513)
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEE----------------CCCCccccChHHHHHHHHHHHH
Confidence            7899999999999999999999999  6677     444322                2345566677889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..| +.++.-+  ++.+...+..++|.++|.+|.
T Consensus        66 LGl~wD-e~py~QS--eR~~~Y~~~a~~Li~~G~AY~   99 (513)
T PRK14895         66 LGLDWN-GEVIFQS--KRNNLYKEAALKLLQNGKAYY   99 (513)
T ss_pred             cCCCCC-CCceeEe--CcHHHHHHHHHHHHHcCCeEE
Confidence            999544 1344333  356788999999999999995

>PLN02859 glutamine-tRNA ligase

Probab=99.12  E-value=1.4e-10  Score=99.58  Aligned_cols=91  Identities=11%  Similarity=0.093  Sum_probs=69.4

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++.-.+||  ...|     .-++.                -.+++|.+...++.+.|.++|++
T Consensus       269 FaPsPtG~LHiGharaallN~~~Ar--~~~G-----~~~LR----------------ieDTdp~r~~~e~~~~I~edL~W  325 (788)
T PLN02859        269 FPPEPNGYLHIGHAKAMFVDFGLAK--ERGG-----CCYLR----------------FDDTNPEAEKKEYIDHIEEIVEW  325 (788)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ecCCCCCccchHHHHHHHHHHHH
Confidence            7999999999999999999999999  5677     33321                23566777788999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+.  |...  +.+..|.+..-+...+|+++|.+|.-
T Consensus       326 LG~~--~d~~--~~qSd~f~~~Y~~A~~Li~~G~AY~C  359 (788)
T PLN02859        326 MGWE--PFKI--TYTSDYFQELYELAVELIRRGHAYVD  359 (788)
T ss_pred             cCCC--CCCc--ccccHhHHHHHHHHHHHHHcCCeEec
Confidence            9974  4443  33334554444566789999999963

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=99.09  E-value=2e-10  Score=94.76  Aligned_cols=92  Identities=11%  Similarity=0.087  Sum_probs=72.0

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+|++++.-.+||  +..|     .-++.                =+++++.....++.+.+.++|++
T Consensus         9 fAPSPtG~lHiG~~rtal~n~l~Ar--~~~G-----~fiLR----------------ieDtD~~R~~~~~~~~i~~~L~w   65 (476)
T PRK01406          9 FAPSPTGYLHIGGARTALFNWLFAR--HHGG-----KFILR----------------IEDTDQERSTEEAEEAILEGLKW   65 (476)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEE----------------eCcCCCCCCChHHHHHHHHHHHH
Confidence            7899999999999999999999999  6677     43322                13455667778889999999999


Q ss_pred             cCcccccCC------ceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWES------ELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~------~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|-..      ++.  ..++.+...+...+|.++|.+|.
T Consensus        66 lGl~~De~p~~~~~gpy~--QS~r~~~y~~~~~~L~~~g~aY~  106 (476)
T PRK01406         66 LGLDWDEGPDGGPYGPYR--QSERLDIYKEYAEQLLEEGKAYY  106 (476)
T ss_pred             CCCCCCCCCccCCCCcee--hhcCHHHHHHHHHHHHHcCCeee
Confidence            999655110      233  33466889999999999999996

>PLN02627 glutamyl-tRNA synthetase

Probab=99.06  E-value=2.7e-10  Score=94.65  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+|++++.-.+||  +..|     .-++.+                +++++.....++.+.|.++|++
T Consensus        50 FAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG-----~fiLRI----------------EDTD~~R~~~e~~~~I~~~L~W  106 (535)
T PLN02627         50 FAPSPTGNLHVGGARTALFNYLFAR--SKGG-----KFVLRI----------------EDTDLARSTKESEEAVLRDLKW  106 (535)
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH--HhCC-----EEEEEe----------------CcCCCCCCChHHHHHHHHHHHH
Confidence            7899999999999999999999999  7777     443222                3455566777889999999999


Q ss_pred             cCcccccCC-------ceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWES-------ELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~-------~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|-..       +|.  +.++.+...+...+|+++|.+|.
T Consensus       107 LGl~wDegp~~gg~~gpy~--QSeR~~~Y~~~a~~Li~~G~AY~  148 (535)
T PLN02627        107 LGLDWDEGPDVGGEYGPYR--QSERNAIYKQYAEKLLESGHVYP  148 (535)
T ss_pred             cCCCCCcCcccCCCCCCee--eeccHHHHHHHHHHHHHcCCeee
Confidence            999555211       222  33466888999999999999995

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=99.04  E-value=9.4e-10  Score=83.48  Aligned_cols=86  Identities=9%  Similarity=0.093  Sum_probs=64.9

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++.-.++|  +..|     .-+   .=+||             +++..-..++.+.+.++|++
T Consensus         6 fAPsPtG~LHlG~~~~al~n~l~ar--~~~G-----~~i---lRieD-------------td~~r~~~~~~~~i~~dL~w   62 (239)
T cd00808           6 FAPSPTGFLHIGGARTALFNYLFAR--KHGG-----KFI---LRIED-------------TDQERSVPEAEEAILEALKW   62 (239)
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----eEE---EEECc-------------CCCCCCchHHHHHHHHHHHH
Confidence            7899999999999999999999998  5556     322   22333             34445556789999999999


Q ss_pred             cCcccccCC---------ceecCChhHHHHHHHHHHHHHHCC
Q psy6621          82 FGCKFNWES---------ELATCDPKYYKWTQALFLDLYHAG  114 (133)
Q Consensus        82 lgi~~d~~~---------~~~T~~~~~~~~v~~~f~~L~~~G  114 (133)
                      ||+..|  .         ++..+  .+.+...+..++|.++|
T Consensus        63 lGl~~d--~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g  100 (239)
T cd00808          63 LGLDWD--EGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG  100 (239)
T ss_pred             cCCCCC--cCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence            999554  4         33333  36788888899999988

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG1147|consensus

Probab=98.99  E-value=6.5e-10  Score=91.69  Aligned_cols=95  Identities=12%  Similarity=0.110  Sum_probs=78.0

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |||-|+|.||||||..+++.--++-  +.+|        ..++-+|             +++|.+-.+++.+.+++++..
T Consensus       205 FPPEpSGyLHIGHAKAALLNqYfa~--~~~G--------~LIvRFD-------------DTNPaKE~~eFe~~IleDl~~  261 (712)
T KOG1147|consen  205 FPPEPSGYLHIGHAKAALLNQYFAQ--AYQG--------KLIVRFD-------------DTNPAKENEEFEDVILEDLSL  261 (712)
T ss_pred             cCCCCCceeehhhHHHHHHHHHHHH--hcCc--------eEEEEec-------------CCCcchhhHHHHHHHHHHHHH
Confidence            8999999999999999988766554  4555        2223333             468888889999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceee
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDY  123 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v  123 (133)
                      |||..|    ..|...+|.+.+.....+|++.|-+|.++.+.
T Consensus       262 LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~  299 (712)
T KOG1147|consen  262 LGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT  299 (712)
T ss_pred             hCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence            999887    45777789999999999999999999987653

>KOG1148|consensus

Probab=98.34  E-value=1.1e-06  Score=73.63  Aligned_cols=90  Identities=12%  Similarity=0.148  Sum_probs=67.1

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |||-|||.||||||-..-+.==+|+  .+.|     ..-+                +-.+++|++-.+++...|.+...+
T Consensus       253 FPPEPNG~LHIGHaKAInvNFgyAk--~~~G-----~cyL----------------RfDDTNPEkEee~yf~sI~e~V~W  309 (764)
T KOG1148|consen  253 FPPEPNGILHIGHAKAINVNFGYAK--AHGG-----VCYL----------------RFDDTNPEKEEEEYFESIKEMVAW  309 (764)
T ss_pred             CCCCCCceeeecchhheeechhhhh--hhCC-----eEEE----------------ecCCCCcchhhHHHHHHHHHHHHH
Confidence            8999999999999987433322333  2233     2111                112468888889999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||...    ...|.+.+|.+..-++-.+|+++|++|.
T Consensus       310 LG~~P----~kvTysSDyFdqLy~~av~LIrkG~AYV  342 (764)
T KOG1148|consen  310 LGFEP----YKVTYSSDYFDQLYELAVELIRKGKAYV  342 (764)
T ss_pred             hCCCc----eeeecchhHHHHHHHHHHHHHhcCceeE
Confidence            98743    3578888888888888899999999995

>KOG1149|consensus

Probab=98.20  E-value=4.2e-06  Score=68.04  Aligned_cols=94  Identities=12%  Similarity=0.105  Sum_probs=69.2

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||+|-+|++...=++||  +..|     .-++.+                ++++....+.....++.++|.+
T Consensus        38 FAPSPTGfLHlGgLRTALfNYLfAr--k~gG-----kFiLRi----------------EDTDq~R~v~gs~e~i~~~L~w   94 (524)
T KOG1149|consen   38 FAPSPTGFLHLGGLRTALFNYLFAR--KKGG-----KFILRI----------------EDTDQKRLIRGSEEAIYEDLKW   94 (524)
T ss_pred             ecCCCCcceehhhHHHHHHHHHHHH--hcCC-----eEEEEe----------------ccccccccccchHHHHHHHHHh
Confidence            7899999999999999999988888  6777     544333                2344456666677889999999


Q ss_pred             cCcccccCC----c-eecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWES----E-LATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~----~-~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      +|+..|-..    + -+-...+..+..+...++|++.|.+|+
T Consensus        95 ~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr  136 (524)
T KOG1149|consen   95 ANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR  136 (524)
T ss_pred             cCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE
Confidence            999776211    0 112233455677788899999999997

>KOG4426|consensus

Probab=98.17  E-value=1.1e-05  Score=65.96  Aligned_cols=110  Identities=14%  Similarity=0.114  Sum_probs=82.0

Q ss_pred             CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHH----HHHHc-----------------------
Q psy6621           8 ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAEN----AAHQH-----------------------   60 (133)
Q Consensus         8 g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~----~a~~~-----------------------   60 (133)
                      -..|+||+|+.+++|.++|.+...|     ++|+.+.-+-|.|...-+    .-.+.                       
T Consensus       201 KeMHVGHLRSTIIGdsl~RllE~~~-----~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkr  275 (656)
T KOG4426|consen  201 KEMHVGHLRSTIIGDSLCRLLEFSG-----VDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKR  275 (656)
T ss_pred             HHhhhhhhhhhhHhHHHHHHHHhcC-----cceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHHhc
Confidence            4799999999999999999999999     999988888777755321    11110                       


Q ss_pred             -------------------CCCh------HHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCC
Q psy6621          61 -------------------GIDP------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGL  115 (133)
Q Consensus        61 -------------------g~~~------~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~  115 (133)
                                         |-+|      ..+|+-..+++.+..++|.|+.-     -.-+..|...+.++++.|..+|+
T Consensus       276 FD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~-----e~GESFYq~~m~~vveel~~kgl  350 (656)
T KOG4426|consen  276 FDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLK-----ERGESFYQDRMAEVVEELKSKGL  350 (656)
T ss_pred             cCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHh-----hcchhhhhhHHHHHHHHHhcCCc
Confidence                               1111      34577778899999999999873     12334577889999999999999


Q ss_pred             eEEece-eeeecC
Q psy6621         116 VYRKEV-DYSQNL  127 (133)
Q Consensus       116 iy~~~~-~v~~~~  127 (133)
                      +..+++ .+.|-+
T Consensus       351 vee~~Gr~i~f~~  363 (656)
T KOG4426|consen  351 VEEDDGRRIMFPE  363 (656)
T ss_pred             eeecCCceEeccC
Confidence            998764 344443

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6

Probab=98.12  E-value=8.3e-07  Score=70.87  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCH--HHHH-----HHHH-cCCC------h----HH
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGL--PAEN-----AAHQ-HGID------P----RE   66 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~--~i~~-----~a~~-~g~~------~----~~   66 (133)
                      +|+|.+|||+++..+.+|+++|-++.+|     .+|.+++.+||.+-  ++-.     ..++ .|.+      |    ..
T Consensus        32 sPSG~~HIGn~rEv~~~~~V~~al~~~g-----~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~~~S  106 (360)
T PF01921_consen   32 SPSGLPHIGNFREVLRADMVARALRDRG-----KDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGCHES  106 (360)
T ss_dssp             --SS---HHHHHHHHHHHHHHHHHHTTT------EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSSSSC
T ss_pred             CCCCCcccccccchhhHHHHHHHHHHcC-----CCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCCCcc
Confidence            6999999999999999999999999999     99999999999872  2211     1111 1322      1    57


Q ss_pred             HHHHHHHHHHHHHHhcCcccc
Q psy6621          67 WTVGNIATMKSQLQGFGCKFN   87 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d   87 (133)
                      +++.+.+.+.+.|+.+||...
T Consensus       107 yaeH~~~~~~~~L~~~gie~e  127 (360)
T PF01921_consen  107 YAEHFNAPFEEFLDEFGIEYE  127 (360)
T ss_dssp             HHHHHHHHHHHHHHTTT---E
T ss_pred             HHHHHHHHHHHHHHHcCCceE
Confidence            899999999999999999775

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=3.7e-05  Score=63.72  Aligned_cols=78  Identities=15%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCH--------HHHHHHHH-cCCC----------hH
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGL--------PAENAAHQ-HGID----------PR   65 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~--------~i~~~a~~-~g~~----------~~   65 (133)
                      +|+|.+|||+++-.+.+|+++|-+|.+|     ..|.+++=+||.+-        |-....++ .|++          ..
T Consensus        28 sPSG~~HIGn~rEv~t~d~V~ralr~~g-----~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~G~~~  102 (521)
T COG1384          28 SPSGLIHIGNFREVLTADAVRRALRDRG-----DEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPFGCCD  102 (521)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHHHHcC-----CceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCccccc
Confidence            6999999999999999999999999999     99999999999972        21122233 3543          26


Q ss_pred             HHHHHHHHHHHHHHHhcCcccc
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFN   87 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d   87 (133)
                      .+++.+...+.+.|..+||...
T Consensus       103 Sya~hf~~~f~~~l~~~Gi~~E  124 (521)
T COG1384         103 SYAEHFLRPFEEFLDEFGIEVE  124 (521)
T ss_pred             hHHHHHHHHHHHHHHhcCCceE
Confidence            7899999999999999998764

>KOG1195|consensus

Probab=97.57  E-value=0.00039  Score=57.67  Aligned_cols=117  Identities=12%  Similarity=-0.045  Sum_probs=82.3

Q ss_pred             CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH---H---------------------
Q psy6621           4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH---Q---------------------   59 (133)
Q Consensus         4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~---~---------------------   59 (133)
                      ||.+-+.|+||+|..+++-.++...+..|     ++|..+-..-|.|...-..+.   +                     
T Consensus       119 PNIAK~FHvGhLRsTiiG~flanl~e~~G-----~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk  193 (567)
T KOG1195|consen  119 PNIAKPFHVGHLRSTIIGNFLANLHEALG-----WEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLFDVYVK  193 (567)
T ss_pred             CCcccccccchhhhhhhhhHhhhhHHhhC-----CceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHHHHHHH
Confidence            55567899999999999999999999999     999777666666544321110   0                     


Q ss_pred             ------cCCC----------------------hHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHH
Q psy6621          60 ------HGID----------------------PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY  111 (133)
Q Consensus        60 ------~g~~----------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~  111 (133)
                            ...+                      ++++.+--+....+...+||+.+|-   +.-.+.-+.+.++.+...+.
T Consensus       194 ~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~---y~gESqv~~e~~~~~~d~~r  270 (567)
T KOG1195|consen  194 INKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDE---YSGESQVSNEKMQEALDLLR  270 (567)
T ss_pred             hhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeee---ccchHHHHHHHHHHHHHHHH
Confidence                  0000                      0224455567777888999999982   12223346678889999999


Q ss_pred             HCCCeEEeceeeeecCC
Q psy6621         112 HAGLVYRKEVDYSQNLP  128 (133)
Q Consensus       112 ~~G~iy~~~~~v~~~~~  128 (133)
                      .+|++-..++...+|..
T Consensus       271 s~~l~~e~dG~~vidL~  287 (567)
T KOG1195|consen  271 SANLTEEIDGTIVIDLS  287 (567)
T ss_pred             hcCCcccCCCcEEEEec
Confidence            99988887777777654

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=95.99  E-value=0.06  Score=41.83  Aligned_cols=67  Identities=13%  Similarity=0.002  Sum_probs=41.6

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||..+++..  +.++++ .|     +++.+..+-. |..-      ....+++ -.+++...+.+++.++|+
T Consensus         7 ~PTG~lHLG~~~~al~~--~~~lQ~-ag-----~~~~~~IaD~-ha~t------~~~~~~~-~~~~~~~~~~~~~lA~G~   70 (280)
T cd00806           7 QPSGSLHLGHYLGAFRF--WVWLQE-AG-----YELFFFIADL-HALT------VKQLDPE-ELRQNTRENAKDYLACGL   70 (280)
T ss_pred             CCCchhhHHHHHHHHHH--HHHHHh-CC-----CCEEEEecch-HHHh------CCCCCHH-HHHHHHHHHHHHHHHcCC
Confidence            48999999999986544  334433 37     7776554432 2220      1113444 446677778888999998


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        71 dp~   73 (280)
T cd00806          71 DPE   73 (280)
T ss_pred             Ccc
Confidence            653

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=95.15  E-value=0.033  Score=42.94  Aligned_cols=71  Identities=17%  Similarity=0.058  Sum_probs=44.3

Q ss_pred             CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC--CHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF--GLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~--G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      -||| .+||||..+.   -.+.++++. |     ++|.+..|-.+.  |.|.-+..++.+.+++ -..++...+..++.+
T Consensus         8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g-----~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~-~i~~~~~~~~~~~~a   77 (269)
T cd00805           8 DPTAPSLHLGHLVPL---MKLRDFQQA-G-----HEVIVLIGDATAMIGDPSGKSEERKLLDLE-LIRENAKYYKKQLKA   77 (269)
T ss_pred             CCCCCcccHHHHHHH---HHHHHHHHC-C-----CeEEEEECCCeeecCCCCCccccccCCCHH-HHHHHHHHHHHHHHH
Confidence            4899 8999998853   357777765 8     887655554332  2232112222344554 446677778888888


Q ss_pred             cCcc
Q psy6621          82 FGCK   85 (133)
Q Consensus        82 lgi~   85 (133)
                      +|..
T Consensus        78 ~g~~   81 (269)
T cd00805          78 ILDF   81 (269)
T ss_pred             HHcc
Confidence            8874

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=95.15  E-value=0.16  Score=41.07  Aligned_cols=66  Identities=15%  Similarity=0.049  Sum_probs=41.1

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||...   ...+.+++. .|     ++|.+..+-++. .     . ..+.+++++ +++...+..++.++|+
T Consensus        74 ~PSG~lHLGh~~~---~~~~~~lQ~-~g-----~~~~i~IaD~ha-~-----~-~~~~~~e~~-~~~~~~~~~~~lA~G~  136 (368)
T PRK12285         74 MPSGPMHIGHKMV---FDELKWHQE-FG-----ANVYIPIADDEA-Y-----A-ARGLSWEET-REWAYEYILDLIALGF  136 (368)
T ss_pred             CCCCCccHHHHHH---HHHHHHHHh-cC-----CCEEEEecchHH-H-----h-cCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence            5899999999753   344555555 78     777655543331 1     1 114565554 4444557778889998


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       137 Dp~  139 (368)
T PRK12285        137 DPD  139 (368)
T ss_pred             Ccc
Confidence            765

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=94.94  E-value=0.06  Score=41.68  Aligned_cols=71  Identities=17%  Similarity=0.080  Sum_probs=42.2

Q ss_pred             CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC--CHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF--GLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~--G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      .||| .+||||..+   -..+.++++ .|     +++.+..|-.+.  |+|.-...++.-.+ .+-+.++...+.+++.+
T Consensus         7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g-----~~~~~~I~d~~a~~~d~sg~~~~r~~~~-~~~i~~n~~~~~~~~~a   76 (273)
T cd00395           7 DPTADSLHIGHLIG---LLTFRRFQH-AG-----HRPIFLIGGQTGIIGDPSGKKSERTLND-PEEVRQNIRRIAAQYLA   76 (273)
T ss_pred             cCCCCCccHHHHHH---HHHHHHHHH-CC-----CCEEEEEecCceeeCCCCCccccccCCC-HHHHHHHHHHHHHHHHH
Confidence            4899 699999887   233445544 68     888766552221  22221111111223 44556668889999999


Q ss_pred             cCcc
Q psy6621          82 FGCK   85 (133)
Q Consensus        82 lgi~   85 (133)
                      +|+.
T Consensus        77 ~g~d   80 (273)
T cd00395          77 VGIF   80 (273)
T ss_pred             hcCc
Confidence            9985

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=94.37  E-value=0.26  Score=40.70  Aligned_cols=82  Identities=13%  Similarity=0.016  Sum_probs=47.3

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.+||||..+.+-.  ..+.+...|     +++.+.. .|-|-+-       ...+|.++.+. ...+..++-..|+
T Consensus        10 qPTG~lHLGNylGaik~--~v~lq~q~~-----~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~Gl   73 (431)
T PRK12284         10 TTTGTPHLGNYAGAIRP--AIAASRQPG-----VESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLAAGL   73 (431)
T ss_pred             cCCCcchHHHHHHHHHH--HHHHHHhCC-----CcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHHhCC
Confidence            49999999998776542  334444458     8775443 3333221       12456655443 4557788888998


Q ss_pred             ccccCCc-eecCChhHHHH
Q psy6621          85 KFNWESE-LATCDPKYYKW  102 (133)
Q Consensus        85 ~~d~~~~-~~T~~~~~~~~  102 (133)
                      ..+-... .-+.-|++.+.
T Consensus        74 DPek~~if~QSdvpeh~EL   92 (431)
T PRK12284         74 DPERVTFYRQSDIPEIPEL   92 (431)
T ss_pred             CccceEEEECCcchhHHHH
Confidence            7653222 23344665444

>PLN02486 aminoacyl-tRNA ligase

Probab=94.16  E-value=0.6  Score=37.99  Aligned_cols=67  Identities=12%  Similarity=0.030  Sum_probs=39.3

Q ss_pred             CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      .||| .+||||+...   ..+..+++..|     ..+....+ |+     +....+ +.+.++. .++.....+++.++|
T Consensus        81 ~PSg~~lHlGHlv~~---~~~~~lQ~~~~-----~~~~I~ia-D~-----e~~~~~-~~~~e~i-~~~~~en~~~iiA~G  144 (383)
T PLN02486         81 GPSSEALHLGHLIPF---MFTKYLQDAFK-----VPLVIQLT-DD-----EKFLWK-NLSVEES-QRLARENAKDIIACG  144 (383)
T ss_pred             CCCCccccHHHHHHH---HHHHHHHHhCC-----CeEEEEec-CH-----HHHhhc-CCCHHHH-HHHHHHHHHHHHHhC
Confidence            5999 5999996554   33444444556     65555433 43     333333 4565443 455556667777788


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       145 ~dp~  148 (383)
T PLN02486        145 FDVE  148 (383)
T ss_pred             CCCc
Confidence            7664

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=93.88  E-value=0.37  Score=38.24  Aligned_cols=84  Identities=8%  Similarity=-0.098  Sum_probs=49.9

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCc-eeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPV-RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~-~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      .|||.+||||..+++..    +++-..+     + ++ |++=.|.|.+-      ..+.++.+-.+....+...++-++|
T Consensus        13 ~PSG~lHLGny~ga~~~----~v~~q~~-----~~~~-f~~IaDlha~t------~~~~~~~~~l~~~~~e~~a~~LA~G   76 (314)
T COG0180          13 QPSGKLHLGNYLGAIRN----WVLLQEE-----YYEC-FFFIADLHAIT------VRQDPTEEDLRQATREVAADYLAVG   76 (314)
T ss_pred             CCCCCcchhHhHHHHHH----HHHHhcc-----cCce-EEEEecHHHhh------cCCCChHHHHHHHHHHHHHHHHHhc
Confidence            49999999999887543    4444444     4 44 33344544221      1233334566677777888888899


Q ss_pred             ccccc-CCceecCChhHHHHHH
Q psy6621          84 CKFNW-ESELATCDPKYYKWTQ  104 (133)
Q Consensus        84 i~~d~-~~~~~T~~~~~~~~v~  104 (133)
                      +..+- .-+.-+.-|++.+..+
T Consensus        77 iDP~k~~if~QS~v~e~~eLa~   98 (314)
T COG0180          77 LDPEKSTIFLQSEVPEHAELAW   98 (314)
T ss_pred             cCccccEEEEccCchHHHHHHH
Confidence            87763 2223344566555443

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=93.78  E-value=0.14  Score=41.94  Aligned_cols=67  Identities=15%  Similarity=0.050  Sum_probs=39.3

Q ss_pred             CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      -||| .|||||+...   -.+.++ ...|     +++.++.|-.+  .|+|.-...++...+.+ -+.++...+.+++.+
T Consensus        41 dPT~~sLHlGhlv~l---~~l~~l-q~~G-----~~~~~ligd~ta~igDpsgk~~~R~~l~~e-~i~~n~~~i~~q~~~  110 (410)
T PRK13354         41 DPTAPSLHIGHLVPL---MKLKRF-QDAG-----HRPVILIGGFTGKIGDPSGKSKERKLLTDE-QVQHNAKTYTEQIFK  110 (410)
T ss_pred             cCCCCCcchhhHHHH---HHHHHH-HHcC-----CeEEEEEcccccccCCCCcccccccCCCHH-HHHHHHHHHHHHHHH
Confidence            4898 5999996553   224444 4578     88876665544  45554222223334433 345666777777666

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=93.77  E-value=0.37  Score=38.32  Aligned_cols=86  Identities=13%  Similarity=0.074  Sum_probs=47.8

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||..+.+..    ++.-..|     ++|.+..+-. |..-     ...+.++. ...+....+..++.++|+
T Consensus        10 ~PTG~~HlG~~l~~~~~----~~~~q~~-----~~~~i~IaD~-ha~t-----~~~~~~~~-~~~~~~~~~~~~~lA~Gl   73 (328)
T TIGR00233        10 QPSGKMHLGHYLGAIQT----KWLQQFG-----VELFICIADL-HAIT-----VKDNTDPD-ALRKAREELAADILAVGL   73 (328)
T ss_pred             CCCcHhHHHHHHHHHHH----HHHHhCC-----CCEEEEeecc-hhhc-----CCCCCCHH-HHHHHHHHHHHHHHHhCc
Confidence            59999999998876544    2223568     8876554433 3110     01111333 335555666778888998


Q ss_pred             ccccCCc-eecCChhHHHHHHHH
Q psy6621          85 KFNWESE-LATCDPKYYKWTQAL  106 (133)
Q Consensus        85 ~~d~~~~-~~T~~~~~~~~v~~~  106 (133)
                      ..+-... .-+.-++|.+..+.+
T Consensus        74 Dp~k~~if~qS~~~e~~el~~~l   96 (328)
T TIGR00233        74 DPKKTFIFLQSDYPEHYELAWLL   96 (328)
T ss_pred             ChhheEEEEcCCcHHHHHHHHHH
Confidence            7763222 223335665555533

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>PLN02886 aminoacyl-tRNA ligase

Probab=93.05  E-value=0.54  Score=38.35  Aligned_cols=80  Identities=15%  Similarity=0.049  Sum_probs=46.3

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.+||||..+.+-  -+..+++  |     +++.+ +=.|-|-+-       ..-++.++ +++...+..++.++|+
T Consensus        54 qPSG~lHLGnylGai~--~~v~lQ~--~-----~~~~~-~IADlHAlt-------~~~~~~~l-r~~~~~~~a~~lA~Gl  115 (389)
T PLN02886         54 QPTGSIHLGNYLGAIK--NWVALQE--T-----YDTFF-CVVDLHAIT-------LPHDPREL-GKATRSTAAIYLACGI  115 (389)
T ss_pred             CCCCccHHHHHHHHHH--HHHHHhc--c-----CCEEE-EEecHHHhh-------CCCCHHHH-HHHHHHHHHHHHHcCc
Confidence            4899999999887652  3444443  7     77643 334444221       12355544 4555667888889999


Q ss_pred             ccccCC-ceecCChhHHHH
Q psy6621          85 KFNWES-ELATCDPKYYKW  102 (133)
Q Consensus        85 ~~d~~~-~~~T~~~~~~~~  102 (133)
                      ..+-.. +.-+..|++.+.
T Consensus       116 DP~ks~if~QS~v~e~~eL  134 (389)
T PLN02886        116 DPSKASVFVQSHVPAHAEL  134 (389)
T ss_pred             CccceEEEEeCCCchhHHH
Confidence            765222 223344555443

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=92.99  E-value=0.57  Score=37.28  Aligned_cols=65  Identities=17%  Similarity=0.152  Sum_probs=38.2

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.+||||..+.+-.  +.+++.  +     ++|.+..+ |-|.+       -...++++ +.++...+.+++.++|+
T Consensus         9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~-----~~~~~~Ia-D~ha~-------t~~~~~~~-i~~~~~~~~~~~lA~Gl   70 (333)
T PRK00927          9 QPTGKLHLGNYLGAIKN--WVELQD--E-----YECFFCIA-DLHAL-------TVPQDPEE-LRENTRELAADYLACGI   70 (333)
T ss_pred             CCCccchHHhHHHHHHH--HHHHHh--c-----CCeEEEEe-cHHHH-------hCCCCHHH-HHHHHHHHHHHHHeEcc
Confidence            49999999999887533  444433  4     55654443 22211       11124443 34556667778888888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        71 Dp~   73 (333)
T PRK00927         71 DPE   73 (333)
T ss_pred             Chh
Confidence            765

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=92.66  E-value=0.78  Score=36.58  Aligned_cols=82  Identities=12%  Similarity=0.086  Sum_probs=44.5

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.+||||..+.+-.  ..+.+...|     .++.+.. .|-|-+   .    ...+|+++ +++......++-++|+
T Consensus        11 qPTG~~HLGnylga~k~--~~~lq~~~~-----~~~~~~I-ADlHal---t----~~~~~~~l-~~~~~~~~~~~lA~Gl   74 (332)
T PRK12556         11 KPTGYPHLGNYIGAIKP--ALQMAKNYE-----GKALYFI-ADYHAL---N----AVHDPEQF-RSYTREVAATWLSLGL   74 (332)
T ss_pred             CCCCcchHHHHHHHHHH--HHHHHHhcC-----CeEEEEE-echhhc---c----CCCCHHHH-HHHHHHHHHHHhheee
Confidence            48999999998775442  223333345     5554433 233322   1    11255554 4555667778888999


Q ss_pred             ccccCC-ceecCChhHHHH
Q psy6621          85 KFNWES-ELATCDPKYYKW  102 (133)
Q Consensus        85 ~~d~~~-~~~T~~~~~~~~  102 (133)
                      ..+-.. +.-+.-|++.+.
T Consensus        75 DP~k~~if~qS~v~~~~eL   93 (332)
T PRK12556         75 DPEDVIFYRQSDVPEIFEL   93 (332)
T ss_pred             cccceEEEECCCchHHHHH
Confidence            766222 222333555443

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=92.29  E-value=0.5  Score=38.68  Aligned_cols=66  Identities=21%  Similarity=0.198  Sum_probs=35.8

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC-CC-CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW-DA-FGLPAENAAHQHGIDPREWTVGNIATMKSQLQ   80 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~-D~-~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~   80 (133)
                      -|||+ |||||+..   -..+.++++ .|     +++.++.|- +. .|+|.-...+....+ .+.+..+...+++++.
T Consensus        41 dPTg~slHlGhlv~---l~~l~~lQ~-~G-----~~~~~ligd~ta~igDpsgk~~~r~~l~-~e~i~~n~~~i~~ql~  109 (408)
T PRK05912         41 DPTAPSLHLGHLVP---LLKLRRFQD-AG-----HKPIALIGGFTGMIGDPSGKSETRKLLT-REQVAENAETIKEQLF  109 (408)
T ss_pred             cCCCCCccHHhHHH---HHHHHHHHH-CC-----CcEEEEEcCceeEcCCCCCCchhhccCC-HHHHHHHHHHHHHHHH
Confidence            48995 99999874   234555554 68     887665543 11 122221111122233 4455566677777774

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=92.27  E-value=0.61  Score=37.03  Aligned_cols=66  Identities=11%  Similarity=-0.035  Sum_probs=38.5

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||+.. +  -.+.++++ .|     ++|.+..+=. |..-.      ...+++ -.+.+...+..++.++|+
T Consensus        38 ~PTG~lHLG~~~~-~--~~~~~lq~-~g-----~~~~i~IaD~-ha~~~------~~~~~~-~i~~~~~~~~~~~~A~G~  100 (329)
T PRK08560         38 EPSGKIHLGHLLT-M--NKLADLQK-AG-----FKVTVLLADW-HAYLN------DKGDLE-EIRKVAEYNKKVFEALGL  100 (329)
T ss_pred             CCCCcchhhhhHH-H--HHHHHHHH-CC-----CeEEEEEccc-hhhcC------CCCCHH-HHHHHHHHHHHHHHHcCC
Confidence            5899999999653 2  23666665 47     7765444322 21100      013443 445556678888888888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       101 dp~  103 (329)
T PRK08560        101 DPD  103 (329)
T ss_pred             Chh
Confidence            654

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=91.16  E-value=0.34  Score=39.69  Aligned_cols=100  Identities=19%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             CCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           6 EEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         6 png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      ||| .|||||+....   .+.| +...|     ++|....|-=+  .|+|. -+.+....-..+.+.++.+.+++++...
T Consensus        41 PTa~slHlGhlv~l~---kL~~-fQ~aG-----h~~ivLigd~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~i~~ql~~~  110 (401)
T COG0162          41 PTAPSLHLGHLVPLM---KLRR-FQDAG-----HKPIVLIGDATAMIGDPS-GKSEERKLLTRETVLENAETIKKQLGKF  110 (401)
T ss_pred             CCCCccchhhHHHHH---HHHH-HHHCC-----CeEEEEecccceecCCCC-CCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence            899 89999987642   2333 34578     88876665332  46665 2222222223556667777777776643


Q ss_pred             Cc---ccccCCceecCChhHHHHHHHH-----HHHHHHCCCe
Q psy6621          83 GC---KFNWESELATCDPKYYKWTQAL-----FLDLYHAGLV  116 (133)
Q Consensus        83 gi---~~d~~~~~~T~~~~~~~~v~~~-----f~~L~~~G~i  116 (133)
                      --   .+-++++ ...+.+|...+..+     ..++.+++-+
T Consensus       111 ld~k~~~v~ns~-w~~~~~y~~~l~~~g~~~sv~rml~~d~~  151 (401)
T COG0162         111 LDNKAEFVNNSD-WLKKLNYLDFLRDVGKHFSVNRMLRRDDV  151 (401)
T ss_pred             CCcceEEEechH-HhCcCCHHHHHHHHHhHccHHHHHHhhhH
Confidence            11   1111111 23334566666655     3445544433

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=91.15  E-value=1.1  Score=36.51  Aligned_cols=69  Identities=9%  Similarity=-0.096  Sum_probs=38.4

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.+||||.  .+..--+.++ ...|     ++|.+..+-- |..-    ..+.|.+++++ ......+...+..+|+
T Consensus        74 ~PTG~lHLG~g--~i~~~~~~~l-q~~G-----~~v~~~IaD~-hA~~----~~~~g~~l~~i-~~~~~~~~~~~~A~Gl  139 (383)
T PTZ00126         74 EPSGRMHIAQG--ILKAINVNKL-TKAG-----CVFVFWVADW-FALL----NNKMGGDLEKI-RKVGEYFIEVWKAAGM  139 (383)
T ss_pred             CCCCcccccch--HhHhHHHHHH-HhCC-----CeEEEEEccc-eeec----CCCCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence            38999999992  2211223333 3448     8876554422 2110    01234455554 5566667778888888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       140 Dp~  142 (383)
T PTZ00126        140 DMD  142 (383)
T ss_pred             Ccc
Confidence            665

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed

Probab=90.79  E-value=2.2  Score=34.06  Aligned_cols=66  Identities=15%  Similarity=0.029  Sum_probs=38.7

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||..+.+..   .+++...|     . |.+. =.|.|..-      ....+++++ +++......++.++|+
T Consensus        10 ~PTG~~HLGn~l~~~~~---~~~lQ~~~-----~-~~i~-IaD~ha~~------~~~~~~~~i-~~~~~~~~~~~lA~G~   72 (333)
T PRK12282         10 RPTGKLHLGHYVGSLKN---RVALQNEH-----E-QFVL-IADQQALT------DNAKNPEKI-RRNILEVALDYLAVGI   72 (333)
T ss_pred             CCCCcchHHHHHHHHHH---HHHHHhCC-----C-EEEE-EccchhHh------CCCCCHHHH-HHHHHHHHHHHHHhCc
Confidence            58999999998886554   11223345     4 4333 25555221      123455544 3455567777888898


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        73 dp~   75 (333)
T PRK12282         73 DPA   75 (333)
T ss_pred             Chh
Confidence            765

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=90.04  E-value=1.8  Score=35.45  Aligned_cols=79  Identities=14%  Similarity=-0.022  Sum_probs=45.3

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|||.+||||..+.+ .    .|.. ..+     +++. ++=.|.|-+-      ....++.++ +++...+..++.++|
T Consensus        10 qPSG~~HLGnylG~i-k----~wv~lq~~-----~~~~-~~IADlHAlt------~~~~d~~~i-r~~~~~~~a~~lA~G   71 (398)
T PRK12283         10 RPTGRLHLGHYHGVL-K----NWVKLQHE-----YECF-FFVADWHALT------THYETPEVI-EKNVWDMVIDWLAAG   71 (398)
T ss_pred             CCCCcchHHHHHHHH-H----HHHHHhcC-----CcEE-EEeecHHHHh------CCCCCHHHH-HHHHHHHHHHHHHcC
Confidence            499999999988854 2    4444 346     6654 3334444221      112255544 455566888899999


Q ss_pred             cccccC-CceecCChhHHH
Q psy6621          84 CKFNWE-SELATCDPKYYK  101 (133)
Q Consensus        84 i~~d~~-~~~~T~~~~~~~  101 (133)
                      +..+-. .+.-+..|+|.+
T Consensus        72 lDP~k~~if~QS~v~eh~e   90 (398)
T PRK12283         72 VDPAQATLFIQSKVPEHAE   90 (398)
T ss_pred             CCccceEEEECCCchHHHH
Confidence            976522 222334455543

>TIGR00234 tyrS tyrosyl-tRNA synthetase

Probab=89.54  E-value=1.1  Score=36.28  Aligned_cols=67  Identities=18%  Similarity=0.152  Sum_probs=35.0

Q ss_pred             CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC-C-CHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA-F-GLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~-~-G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      -||| .|||||+.+.   -.+.++++ .|     ++|.++.|--+ . |+|.-....+.-.+ .+-+.++...+..++..
T Consensus        38 dPTg~~lHlGh~v~l---~~l~~lq~-~G-----~~~~iligd~ta~igdpsg~~~~R~~~~-~~~i~~n~~~i~~~la~  107 (377)
T TIGR00234        38 DPTAPSLHLGHLVPL---LKLRDFQQ-AG-----HEVIVLLGDATALIGDPSGKSEERKLLT-REEVQENAENIKKQIAR  107 (377)
T ss_pred             CCCCCCccHHHHHHH---HHHHHHHH-CC-----CcEEEEEeccchhhcCCCChHHHhhcCC-HHHHHHHHHHHHHHHHH
Confidence            4999 8999997752   33555555 68     88766554322 1 33432211121222 33344555555555543

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6

Probab=86.84  E-value=0.79  Score=35.47  Aligned_cols=32  Identities=16%  Similarity=0.052  Sum_probs=21.4

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG   45 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G   45 (133)
                      .|||.+||||+....   .+.++++ .|     .+|.+..|
T Consensus        13 ~PTg~lHlG~l~~~~---~~~~lq~-~g-----~~~~i~ia   44 (292)
T PF00579_consen   13 DPTGDLHLGHLVPIM---KLIWLQK-AG-----FKVIILIA   44 (292)
T ss_dssp             ESSSS-BHHHHHHHH---HHHHHHH-TT-----SEEEEEEE
T ss_pred             CCCCcccchHHHHHH---HHHHHHh-cC-----CccceEec
Confidence            499999999887653   3444444 88     88876655

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=82.12  E-value=7  Score=34.31  Aligned_cols=68  Identities=9%  Similarity=-0.023  Sum_probs=34.3

Q ss_pred             CCCCcCcchHHHHHHHHHHHHH-HHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEELTCLGGVVVKTHSGAECR-LAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R-~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|||.+||||.   ++. .+.. -+...|     ++|.+..+ |-|..   . ..+.+.+.++... ....+.+.+.++|
T Consensus        40 ~PTG~lHLGng---~~~-aik~~~~~q~g-----~~~~~lIA-D~HAl---t-~~~~~~~l~~i~~-~~~~~~~~~lA~G  104 (682)
T PTZ00348         40 EPSGRMHIAQG---IFK-AVNVNKCTQAG-----CEFVFWVA-DWFAL---M-NDKVGGELEKIRI-VGRYLIEVWKAAG  104 (682)
T ss_pred             CCCCcCeeccH---HHH-HHHHHHHHhCC-----CeEEEEEc-chhhh---c-CCCCCCCHHHHHH-HHHHHHHHHHHcC
Confidence            38999999993   222 1111 123568     87754432 11111   0 1123334444332 2345666788888


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       105 lDpe  108 (682)
T PTZ00348        105 MDMD  108 (682)
T ss_pred             CCcc
Confidence            8665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
4aq7_A	880	Ternary Complex Of E. Coli Leucyl-Trna Synthetase,		5e-23
2v0c_A	878	Leucyl-Trna Synthetase From Thermus Thermophilus Co		5e-22
1obh_A	878	Leucyl-Trna Synthetase From Thermus Thermophilus Co		5e-22
3ziu_A	637	Crystal Structure Of Mycoplasma Mobile Leucyl-trna		5e-19
1qu2_A	917	Insights Into Editing From An Ile-Trna Synthetase S		6e-04

>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 56/80 (70%)
Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V QP+GWDAFGLPAE AA ++   P  WT  NIA MK+QL+  G  ++W  ELATC P+Y
Sbjct: 93  VLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEY 152
Query: 100 YKWTQALFLDLYHAGLVYRK 119
           Y+W Q  F +LY  GLVY+K
Sbjct: 153 YRWEQKFFTELYKKGLVYKK 172

>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 55/79 (69%)
Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA + G+ P++WT  NI   K  L+  G  ++W+ E+ TC+P+Y
Sbjct: 73  VLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEY 132
Query: 100 YKWTQALFLDLYHAGLVYR 118
           Y+W Q +FL ++  GL YR
Sbjct: 133 YRWNQWIFLKMWEKGLAYR 151

>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 55/79 (69%)
Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA + G+ P++WT  NI   K  L+  G  ++W+ E+ TC+P+Y
Sbjct: 73  VLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEY 132
Query: 100 YKWTQALFLDLYHAGLVYR 118
           Y+W Q +FL ++  GL YR
Sbjct: 133 YRWNQWIFLKMWEKGLAYR 151

>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  P+GWDAFGLPAE  A   G  P+ +T+ NI   + QL+  G  F++E E+ T DP Y
Sbjct: 77  VLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNIENFRRQLKSLGFSFDYEKEVNTTDPSY 136
Query: 100 YKWTQALFLDLYHAGLVYRKEVD 122
           Y+WTQ +F  +Y  GL   +EVD
Sbjct: 137 YRWTQWIFKQIYKKGLAEIREVD 159

>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 29  GINSIIKGPVRVFQPM---------GWDAFGLPAENAAHQHGIDP------------REW 67
            +N I+K  +  ++ M         GWD  GLP E A  + G+D             +E+
Sbjct: 68  ALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEF 127
Query: 68  TVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118
            +  I   K   +  G + ++     T  P+Y      +F ++   GL+Y+
Sbjct: 128 ALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	2e-49
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	9e-49
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	3e-26
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	1e-24
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	3e-06
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	8e-06
3tun_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	5e-04

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880

 Score =  167 bits (426), Expect = 2e-49
 Identities = 45/82 (54%), Positives = 56/82 (68%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V QP+GWDAFGLPAE AA ++   P  WT  NIA MK+QL+  G  ++W  ELATC P+Y
Sbjct: 93  VLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEY 152

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           Y+W Q  F +LY  GLVY+K  
Sbjct: 153 YRWEQKFFTELYKKGLVYKKTS 174

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878

 Score =  165 bits (420), Expect = 9e-49
 Identities = 40/82 (48%), Positives = 56/82 (68%)

Query: 40  VFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 99
           V  PMGWDAFGLPAENAA + G+ P++WT  NI   K  L+  G  ++W+ E+ TC+P+Y
Sbjct: 73  VLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEY 132

Query: 100 YKWTQALFLDLYHAGLVYRKEV 121
           Y+W Q +FL ++  GL YR + 
Sbjct: 133 YRWNQWIFLKMWEKGLAYRAKG 154

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810

 Score =  101 bits (253), Expect = 3e-26
 Identities = 20/114 (17%), Positives = 29/114 (25%), Gaps = 28/114 (24%)

Query: 39  RVFQPMGWDAFGLPAENAAHQ------------------------HGIDPREWTVGNIAT 74
            V  PM W   G P    A +                           DP       +  
Sbjct: 73  NVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKA 132

Query: 75  MKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKE--VDYS 124
            K      G   +W  E  T    P + K+ +  F  L   G + +    V + 
Sbjct: 133 AKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWD 186

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967

 Score = 96.6 bits (240), Expect = 1e-24
 Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 26/108 (24%)

Query: 39  RVFQPMGWDAFGLPAENAAHQ------------------------HGIDPREWTVGNIAT 74
            V  PM W   G P    A +                           DP       +  
Sbjct: 73  NVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKA 132

Query: 75  MKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKE 120
            K      G   +W  E  T    P + K+ +  F  L   G + +  
Sbjct: 133 AKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 45  GWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKF-NWESELATCDPKYYKWT 103
           G D  G P    A + G  PRE        +K   Q     F  +     T  P +YK +
Sbjct: 48  GTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGR---TELPIHYKLS 104

Query: 104 QALFLDLYHAGLVYRKEVD 122
           Q  FL  Y  G + +K   
Sbjct: 105 QEFFLKAYENGHLVKKVTK 123

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 47  DAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKF-NWESELATCDPKYYKWTQA 105
           DA G P    A Q GI P +         ++   GF   + N+ S   T   +  + ++ 
Sbjct: 65  DAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHS---THSEENRQLSEL 121

Query: 106 LFLDLYHAGLVYRKEVD 122
           ++  L   G +  + + 
Sbjct: 122 IYSRLKENGFIKNRTIS 138

>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 44  MGWDAF--------GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATC 95
            G   F        G     AA Q  + P ++T       K   +      +    + T 
Sbjct: 45  KGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKXFEQMDYSID--YFIRTT 102

Query: 96  DPKYYKWTQALFLDLYHAGLVYRKE 120
           + ++    + L+  L   G +Y   
Sbjct: 103 NEQHKAVVKELWTKLEQKGDIYLGR 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	100.0
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	100.0
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	100.0
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	100.0
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	100.0
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	100.0
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	100.0
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	100.0
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	100.0
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	100.0
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	100.0
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	100.0
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	100.0
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	99.97
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	99.97
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	99.97
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	99.97
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	99.96
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	99.95
2zue_A	629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	99.82
1iq0_A	592	Arginyl-tRNA synthetase; riken structural genomics	99.81
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	99.77
1f7u_A	607	Arginyl-tRNA synthetase; RNA-protein complex, amin	99.77
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	99.65
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.37
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.36
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.34
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.31
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	99.28
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.27
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	99.25
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.25
4gri_A	512	Glutamate--tRNA ligase; structural genomics, seatt	99.21
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	99.18
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	99.15
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	99.11
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	95.6
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	95.51
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	95.46
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	95.12
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	95.03
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	94.89
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	94.81
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	94.8
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	94.78
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	94.65
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	94.65
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	94.35
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	94.23
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	94.11
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	93.75
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	93.7
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	93.49
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	93.45
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	93.34
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	93.3
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	93.13
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	92.98
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	92.82
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	92.3
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	92.21
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	92.11
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	92.08
1y42_X	392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	91.59
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	91.42
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	88.8
2yxn_A	322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	87.97
1h3f_A	432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	86.9
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	86.69
2ts1_A	419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	86.55
2pid_A	356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	85.92
2jan_A	432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	85.28
2k53_A	76	A3DK08 protein; NESG, CMR9, structural genomics, P	83.46

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=100.00  E-value=3.6e-38  Score=272.95  Aligned_cols=123  Identities=20%  Similarity=0.327  Sum_probs=119.6

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCCh------------HHHHHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDP------------REWTVG   70 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~------------~~~~~~   70 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|.+++||||||+|||.+|++.|++|            ++|+.+
T Consensus        56 pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G-----~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~  130 (917)
T 1ffy_A           56 PPYANGNLHMGHALNKILKDFIVRYKTMQG-----FYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE  130 (917)
T ss_dssp             CCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----CBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999     999999999999999999999999876            689999


Q ss_pred             HHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          71 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        71 ~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +++.|++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~  190 (917)
T 1ffy_A          131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSE  190 (917)
T ss_dssp             HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999986

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=100.00  E-value=7.1e-38  Score=257.78  Aligned_cols=121  Identities=17%  Similarity=0.212  Sum_probs=117.3

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.||||||++++++|+++||+||+|     ++|.+++||||||+||+.+|+++|++|+++++++.+.+++++++|
T Consensus        17 ~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G-----~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l   91 (542)
T 3u1f_A           17 IYYVNAAPHIGHVYSTLITDVIGRYHRVKG-----ERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM   91 (542)
T ss_dssp             EEECSSCCCHHHHHHHHHHHHHHHHHHHTT-----CCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHHHhcC-----CCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||++||  +++|++|.|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus        92 gi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  137 (542)
T 3u1f_A           92 DYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDE  137 (542)
T ss_dssp             TCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             CCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCc
Confidence            999987  5689999999999999999999999999999999999875

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=100.00  E-value=1.1e-36  Score=262.28  Aligned_cols=123  Identities=40%  Similarity=0.692  Sum_probs=114.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|.+++|||+||+|||.+|++.|++|.+|+.++++.|+++|++|
T Consensus        61 ~PypnG~lHiGHa~~~~~~DvlaRy~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L  135 (880)
T 4arc_A           61 LPYPSGRLHMGHVRNYTIGDVIARYQRMLG-----KNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML  135 (880)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHTT-----CEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~  183 (880)
T 4arc_A          136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQ  183 (880)
T ss_dssp             TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred             CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcC
Confidence            999999999999999999999999999999999999999999999876

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=100.00  E-value=4e-36  Score=259.23  Aligned_cols=123  Identities=35%  Similarity=0.689  Sum_probs=121.0

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|.+++||||||+||+.+|++.|++|+++++++++.|++++++|
T Consensus        41 ~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L  115 (878)
T 2v0c_A           41 FPYPSGDLHMGHLKNYTMGDVLARFRRMQG-----YEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM  115 (878)
T ss_dssp             CCCCSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~  163 (878)
T 2v0c_A          116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ  163 (878)
T ss_dssp             TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCC
Confidence            999999999999999999999999999999999999999999999986

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=100.00  E-value=3.8e-36  Score=258.92  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=116.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH----cCCCh------------HH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ----HGIDP------------RE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~----~g~~~------------~~   66 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|++++||||||+|+|.++++    .|+++            ++
T Consensus        42 pPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~  116 (862)
T 1gax_A           42 PPNVTGSLHMGHALDNSLQDALIRYKRMRG-----FEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ  116 (862)
T ss_dssp             CCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----SEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHHHHHhCC-----CccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence            689999999999999999999999999999     9999999999999999999874    46664            47


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |++++.+.|++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~  180 (862)
T 1gax_A          117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCE  180 (862)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcC
Confidence            8999999999999999999999999999999999999999999999999999999999999985

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.9e-36  Score=261.50  Aligned_cols=123  Identities=18%  Similarity=0.218  Sum_probs=116.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---------------C------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------------G------   61 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------------g------   61 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|++++||||||+|||.+|++.               |      
T Consensus        42 pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~  116 (967)
T 1wz2_A           42 FPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL  116 (967)
T ss_dssp             CCBCSSCCBHHHHHHHHHHHHHHHHHHHTT-----CCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHHHHHcCC-----CccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence            689999999999999999999999999999     99999999999999999887641               3      


Q ss_pred             ---CChHHHHHHHHHHHHHHHHhcCcccccCCceecCC--hhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          62 ---IDPREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        62 ---~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                         .+|++|++++.+.+++++++||+++||++++.|++  |.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~  190 (967)
T 1wz2_A          117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG  190 (967)
T ss_dssp             HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCC
Confidence               35789999999999999999999999999999999  9999999999999999999999999999999986

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=100.00  E-value=2e-36  Score=259.71  Aligned_cols=123  Identities=20%  Similarity=0.252  Sum_probs=117.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCCh----------------H
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GIDP----------------R   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~~----------------~   65 (133)
                      +|||||.|||||+++++++|+++||+||+|     ++|.+++|||+||+|||.+|++. |+++                +
T Consensus        46 pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~  120 (821)
T 1ile_A           46 PPTANGLPHVGHAQARSYKDLFPRYKTMRG-----YYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACR  120 (821)
T ss_dssp             CCCTTSCCCTTHHHHHHHHHHHHHHHHHTT-----CBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHH
T ss_pred             CCCCCCCCchhhhHhHHHHHHHHHHHHhcC-----CcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHH
Confidence            589999999999999999999999999999     99999999999999999999985 8763                5


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ++++++.+.|++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus       121 ~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~  185 (821)
T 1ile_A          121 ESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG  185 (821)
T ss_dssp             HHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCC
Confidence            78889999999999999999999999999999999999999999999999999999999999986

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=100.00  E-value=2.4e-35  Score=250.30  Aligned_cols=121  Identities=21%  Similarity=0.160  Sum_probs=117.3

Q ss_pred             CCCCCCcCcchHHHH-HHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           3 DCTEEELTCLGGVVV-KTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         3 ~~~png~lHlGH~~~-~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      +|||||.|||||+++ ++++|+++||+||+|     ++|.+++|||+||+||+.+|+++|++|+++++++.+.|++++++
T Consensus        10 ~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G-----~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~   84 (722)
T 1rqg_A           10 LPYANGPIHAGHLAGAYLPADIFVRYLRLKG-----EDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR   84 (722)
T ss_dssp             CCBTTSCCBHHHHHHHTHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCchhhchhhccHHHHHHHHHHHHhcC-----CceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            589999999999998 999999999999999     99999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |||++||  +++|++|.|.+.++++|.+|+++|+||++.++++|||.++
T Consensus        85 lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~  131 (722)
T 1rqg_A           85 AKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK  131 (722)
T ss_dssp             HTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTT
T ss_pred             hCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCC
Confidence            9998875  6789999999999999999999999999999999999986

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=100.00  E-value=3e-34  Score=245.85  Aligned_cols=123  Identities=18%  Similarity=0.207  Sum_probs=116.4

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----------------------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH----------------------   60 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~----------------------   60 (133)
                      +|||||+|||||+++++++|+++||+||+|     ++|.+++|||+||+||+..|++.                      
T Consensus        42 ~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~  116 (810)
T 1wkb_A           42 FPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL  116 (810)
T ss_dssp             CCBTTSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred             CCCCCCCCccccchhHHHHHHHHHHHHcCC-----CccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence            689999999999999999999999999999     99999999999999999877531                      


Q ss_pred             --CCChHHHHHHHHHHHHHHHHhcCcccccCCceecCC--hhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          61 --GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        61 --g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                        +..++++++++.+.|++++++||+++||++++.|++  |.|.++++++|.+|+++|+||++.++++|||.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~  190 (810)
T 1wkb_A          117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG  190 (810)
T ss_dssp             HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcC
Confidence              246789999999999999999999999999999999  9999999999999999999999999999999986

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=100.00  E-value=2.8e-33  Score=229.82  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=116.3

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||+|||||+++++++|+++||+|++|     ++|.+++|||+||+||+.+|++.|++|.++++++.+.+++++++|
T Consensus        20 ~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l   94 (524)
T 2x1l_A           20 IAYPNGVPHIGHAYEYIATDAIARFKRLDG-----YDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL   94 (524)
T ss_dssp             CBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            478999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||++|  .+++|+++.|.+.++++|.+|+++|+||+++++|+|||.++
T Consensus        95 gi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~  140 (524)
T 2x1l_A           95 NISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDE  140 (524)
T ss_dssp             TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             CCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccC
Confidence            99876  66789999999999999999999999999999999999874

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=100.00  E-value=2e-33  Score=229.50  Aligned_cols=121  Identities=21%  Similarity=0.273  Sum_probs=108.0

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||.|||||+++++++|+++||+|++|     ++|.+++|||+||+||+.+|+++|++|.++++++.+.|++++++|
T Consensus        13 ~py~ng~lHiGH~~~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l   87 (497)
T 2csx_A           13 IYYVNDVPHLGHAYTTIAADTIARYYRLRD-----YDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFL   87 (497)
T ss_dssp             EEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCccchhhHHHHHHHHHHHHHHHhcC-----CceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||++|  .+++|++|.|.+.++++|++|+++|+||++.+.++|||.++
T Consensus        88 gi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~  133 (497)
T 2csx_A           88 KIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCE  133 (497)
T ss_dssp             TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------
T ss_pred             CCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccC
Confidence            99766  56789999999999999999999999999999999999874

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=100.00  E-value=1e-32  Score=225.15  Aligned_cols=121  Identities=19%  Similarity=0.210  Sum_probs=115.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||++||||+++++++|+++||+|++|     ++|.+++|+|+||+||+.+|++.|++|.++++++.+.+++++++|
T Consensus        11 ~py~~g~lHiGH~r~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l   85 (500)
T 2d5b_A           11 IYYVNAEPHLGHAYTTVVADFLARWHRLDG-----YRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL   85 (500)
T ss_dssp             CEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||++|  .+++|+++.|.+.++++|++|+++|+||++++.++|||.++
T Consensus        86 gi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~  131 (500)
T 2d5b_A           86 GIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCE  131 (500)
T ss_dssp             TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             CCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcC
Confidence            99877  56789999999999999999999999999999999999876

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=100.00  E-value=2.5e-32  Score=225.96  Aligned_cols=121  Identities=15%  Similarity=0.179  Sum_probs=116.6

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||+|||||+|+++++|+++||+|++|     ++|.+++|+|+||+||+.+|++.|++|+++++++.+.++++|++|
T Consensus        26 ~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l  100 (560)
T 3h99_A           26 SPYANGSIHLGHMLEHIQADVWVRYQRMRG-----HEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF  100 (560)
T ss_dssp             CCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHHcC-----CeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||++|  .+++|+++.|.+.++++|.+|.++|+||++++.++||+.++
T Consensus       101 gi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~  146 (560)
T 3h99_A          101 NISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKG  146 (560)
T ss_dssp             TCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             CCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccC
Confidence            99766  67889999999999999999999999999999999999875

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=99.97  E-value=4.6e-32  Score=224.80  Aligned_cols=121  Identities=19%  Similarity=0.221  Sum_probs=116.7

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||+|||||+|+++++|+++||+|++|     ++|.+++|+|+||+||+.+|++.|++|+++++++.+.+++++++|
T Consensus        34 ~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~l  108 (564)
T 3kfl_A           34 IYYVNASPHIGHVYSTLIVDVLGRYHRVKG-----EEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEM  108 (564)
T ss_dssp             EEECSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCcchhHHHHHHHHHHHHHHHcC-----CcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            368999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||++|  .+++|+++.|.+.++++|++|.++|+||++...++||+.++
T Consensus       109 gi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~  154 (564)
T 3kfl_A          109 NYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDE  154 (564)
T ss_dssp             TCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTT
T ss_pred             CCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcC
Confidence            99988  46789999999999999999999999999999999999875

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=99.97  E-value=1.4e-31  Score=220.46  Aligned_cols=121  Identities=17%  Similarity=0.254  Sum_probs=116.4

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||+|||||+|+++++|+++||+|++|     ++|.+++|+||||+||+.+|++.|++|+++++++.+.+++++++|
T Consensus        33 ~pypng~lHiGH~r~~v~~D~laR~lr~~G-----~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l  107 (536)
T 4dlp_A           33 IAYPNGKPHIGHAYELIATDAMARFQRLNG-----MDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL  107 (536)
T ss_dssp             CBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcCcchhHHHHHHHHHHHHHHhcC-----CcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            468899999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      ||++|  .+++|+++.|.+.++++|.+|.++|+||++.++++||+.++
T Consensus       108 gi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~  153 (536)
T 4dlp_A          108 NSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDE  153 (536)
T ss_dssp             TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             CCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcC
Confidence            99887  56789999999999999999999999999999999999875

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=99.97  E-value=2.7e-31  Score=215.58  Aligned_cols=121  Identities=12%  Similarity=0.040  Sum_probs=112.7

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||  |.+||||+|+++++|+++||+|++|     |+|.+++|+||+|+||+.+|++.|++|+++++++++.|+++
T Consensus        28 ~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~G-----y~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d  102 (462)
T 3tqo_A           28 LYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRG-----YEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED  102 (462)
T ss_dssp             EEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             EEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcC-----CceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            5777765  7999999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621          79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~  129 (133)
                      +++|||+.|+..+..|   +|++.++++|++|+++|++|++ .++||||+++
T Consensus       103 ~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~  151 (462)
T 3tqo_A          103 EKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR  151 (462)
T ss_dssp             HHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT
T ss_pred             HHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEecccc
Confidence            9999999987655444   6899999999999999999999 7899999975

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}

Probab=99.97  E-value=6.5e-31  Score=214.79  Aligned_cols=121  Identities=10%  Similarity=0.032  Sum_probs=98.4

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC----------CCCCHHHHHHHHHcCCChHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW----------DAFGLPAENAAHQHGIDPREWT   68 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~----------D~~G~~i~~~a~~~g~~~~~~~   68 (133)
                      ||+|+||  |.+||||+|++|++|+++||+|++|     |+|.+++|+          |+||+||+.+|+++|++|++++
T Consensus        45 ~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~G-----y~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a  119 (501)
T 3sp1_A           45 VYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLG-----YKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEIS  119 (501)
T ss_dssp             EEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEBCSCCC-------------------CCHHHHH
T ss_pred             EEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHH
Confidence            6888887  8999999999999999999999999     999999776          5559999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621          69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT  129 (133)
Q Consensus        69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (133)
                      +++++.|++++++|||+.|+..   +..++|++.++++|++|+++|+||+++++||||+.+
T Consensus       120 ~~~~~~f~~d~~~Lgi~~d~~~---~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~  177 (501)
T 3sp1_A          120 EFFTEAFFNDCRKLNIVYPDKV---LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC  177 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSEE---EEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred             HHHHHHHHHHHHHcCCCCCCcc---cCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence            9999999999999999998743   345789999999999999999999999999999976

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=99.96  E-value=2.3e-29  Score=202.03  Aligned_cols=120  Identities=18%  Similarity=0.083  Sum_probs=109.2

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||  |++||||+|+++++|+++||+|++|     ++|.+++|+||+|+||+.+|++.|++|.++++++.+.|+++
T Consensus        42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G-----~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~  116 (414)
T 3c8z_A           42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAG-----HTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFRED  116 (414)
T ss_dssp             EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcC-----CCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4566555  9999999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcc-cccCCceecCChhHHHHHHHHHHHHHHCCCeEEec----eeeeecCCC
Q psy6621          79 LQGFGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE----VDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~-~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~----~~v~~~~~~  129 (133)
                      +++|||. +|+  +.+|++  |.+.++++|++|.++|++|+++    +.+||+.+.
T Consensus       117 ~~~Lgi~~~d~--~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~  168 (414)
T 3c8z_A          117 MAALRVLPPHD--YVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA  168 (414)
T ss_dssp             HHHTTCCCCSE--EEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS
T ss_pred             HHHcCCCCCcc--eecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh
Confidence            9999998 763  345554  8899999999999999999998    889998753

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=99.95  E-value=5.1e-28  Score=196.64  Aligned_cols=120  Identities=16%  Similarity=0.083  Sum_probs=110.8

Q ss_pred             CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+||  |++||||+|+++++|+++||+|+.|     ++|.+++|+||+|++|+.+|++.|.+|+++++++.+.++++
T Consensus        25 ~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G-----~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~   99 (461)
T 1li5_A           25 MYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLG-----YKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD   99 (461)
T ss_dssp             EEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcC-----CCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            5788888  9999999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCccc-ccCCceecCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621          79 LQGFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT  129 (133)
Q Consensus        79 l~~lgi~~-d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~  129 (133)
                      +++|||.+ |+  +.++++  |.+.+++++++|.++|++|++ ++.||||+++
T Consensus       100 ~~~LgI~~~d~--~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~  148 (461)
T 1li5_A          100 FDALNILRPDM--EPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPT  148 (461)
T ss_dssp             HHHTTCCCCSB--CCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGG
T ss_pred             HHHcCCCCCcc--cccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEeccc
Confidence            99999987 54  223433  889999999999999999999 8999999764

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A

Probab=99.82  E-value=2.7e-20  Score=156.09  Aligned_cols=119  Identities=11%  Similarity=0.043  Sum_probs=97.2

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHH----------------------------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAE----------------------------   54 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~----------------------------   54 (133)
                      -|||||++||||+|+.+++|+++|+++..|     ++|.++.+++|+|.++.                            
T Consensus       127 spN~~~~~HiGH~Rs~iigD~laR~l~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~  201 (629)
T 2zue_A          127 SVNPTKPLHMGHARNAILGDVMARILRFLG-----YEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDN  201 (629)
T ss_dssp             CCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSC
T ss_pred             CCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccccccC
Confidence            367789999999999999999999999999     99999999999987742                            


Q ss_pred             -----------HHHHHcC--------------------CChHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHH
Q psy6621          55 -----------NAAHQHG--------------------IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWT  103 (133)
Q Consensus        55 -----------~~a~~~g--------------------~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v  103 (133)
                                 ..+++.+                    ..++++++...+.+++++++|||.+|  ...++++..+.+.+
T Consensus       202 ~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D--~~~~es~~~~~~~v  279 (629)
T 2zue_A          202 PIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYD--LLVWESDIVRRKLF  279 (629)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCS--EEEEHHHHHHTTHH
T ss_pred             cchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccc--cccCcCccccchhH
Confidence                       1222222                    23378899999999999999999886  44455555457899


Q ss_pred             HHHHHHHHHCCCeE-----EeceeeeecCC
Q psy6621         104 QALFLDLYHAGLVY-----RKEVDYSQNLP  128 (133)
Q Consensus       104 ~~~f~~L~~~G~iy-----~~~~~v~~~~~  128 (133)
                      ++++++|.++|++|     +.++.++++..
T Consensus       280 ~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~  309 (629)
T 2zue_A          280 EIALELLSKNENFYIPSDGKYRGAFVMDLR  309 (629)
T ss_dssp             HHHHHHHHTSTTEECCSSSTTTTCEEEECT
T ss_pred             HHHHHHHHHCCCccccccCCcCCcEEEECc
Confidence            99999999999999     66777777654

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1

Probab=99.81  E-value=6.4e-20  Score=152.89  Aligned_cols=117  Identities=13%  Similarity=0.052  Sum_probs=95.4

Q ss_pred             CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHH---------------------------
Q psy6621           4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENA---------------------------   56 (133)
Q Consensus         4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~---------------------------   56 (133)
                      |||||++||||+|+.+++|+++|++++.|     ++|.++..++|.|.++...                           
T Consensus       112 pn~~~~~HiGH~R~~iigD~laR~l~~~G-----~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~  186 (592)
T 1iq0_A          112 VNPNKELHVGHLRNIALGDAIARILAYAG-----REVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVR  186 (592)
T ss_dssp             CCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHH
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHHcC-----CceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHH
Confidence            67779999999999999999999999999     9999998888888543111                           


Q ss_pred             -------------------HHHcCCChHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621          57 -------------------AHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY  117 (133)
Q Consensus        57 -------------------a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy  117 (133)
                                         +.+.|. .+++++.+.+.+++++++|||.+|  ...++++..+.+.+++++++|.++|++|
T Consensus       187 ~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D--~~~~es~~~~~~~v~~~~~~L~~kG~~y  263 (592)
T 1iq0_A          187 LHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYD--LLVWESDIVRAGLLQKALALLEQSPHVF  263 (592)
T ss_dssp             HHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCS--EEEEHHHHHHTTHHHHHHHHHTTSTTEE
T ss_pred             HHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeE--EeccCCcccccchHHHHHHHHHHCCCcc
Confidence                               122344 388999999999999999999887  3345665555789999999999999999


Q ss_pred             -----EeceeeeecCC
Q psy6621         118 -----RKEVDYSQNLP  128 (133)
Q Consensus       118 -----~~~~~v~~~~~  128 (133)
                           +.++.++++.+
T Consensus       264 ~~~~g~~~G~~~~~~~  279 (592)
T 1iq0_A          264 RPREGKYAGALVMDAS  279 (592)
T ss_dssp             CCSSSTTTTCEEEECT
T ss_pred             cCcccCcCCCEEEech
Confidence                 66777776654

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=99.77  E-value=3.4e-20  Score=152.52  Aligned_cols=103  Identities=9%  Similarity=0.078  Sum_probs=89.6

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCC--HHH---HHHHHHc--CCCh----------H
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFG--LPA---ENAAHQH--GIDP----------R   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G--~~i---~~~a~~~--g~~~----------~   65 (133)
                      .|+|||.+||||+|+++++|+++||++++|     ++|.++.++||+|  .+|   ..++.++  |+++          +
T Consensus        27 gPsPtG~lHIGhaR~al~~D~laR~l~~~g-----~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~  101 (523)
T 1irx_A           27 GITPSGYVHVGNFRELFTAYIVGHALRDKG-----YEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE  101 (523)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHHHHHHHTTT-----CEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred             CCCCCCCcccCCcHHHHHHHHHHHHHHHcC-----CCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence            369999999999999999999999999999     9999999999999  666   4455555  8887          8


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHH-HHHHHHHHHHHCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYK-WTQALFLDLYHAG  114 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~-~v~~~f~~L~~~G  114 (133)
                      ++++.+.+.|+++|++|||..|.   +++++. |.+ .+++++++|.++|
T Consensus       102 ~~~~~~~~~~~~~l~~Lgi~~D~---~~~se~-~~~g~~~~~i~~L~~~G  147 (523)
T 1irx_A          102 SYAEHFMRKFEEEVEKLGIEVDL---LYASEL-YKRGEYSEEIRLAFEKR  147 (523)
T ss_dssp             SHHHHHHHHHHHHHHTTTCCCEE---EEHHHH-HHTTTTHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHcCCCceE---Eechhh-ccchHHHHHHHHHHHch
Confidence            99999999999999999997763   233332 777 8999999999999

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*

Probab=99.77  E-value=1.2e-18  Score=145.57  Aligned_cols=117  Identities=10%  Similarity=-0.024  Sum_probs=95.1

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHH---------------------------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAEN---------------------------   55 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~---------------------------   55 (133)
                      -|||+|++||||+|+.+++|+++|+++..|     ++|.++..++|+|.++..                           
T Consensus       151 spN~~~plHvGHlRs~iiGD~laRil~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~~~Y~  225 (607)
T 1f7u_A          151 SPNIAKPFHAGHLRSTIIGGFLANLYEKLG-----WEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYV  225 (607)
T ss_dssp             CCBTTSCCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHH
T ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHHHcC-----CCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHHHHHH
Confidence            467889999999999999999999999999     999999999998877522                           


Q ss_pred             ---------------------HHHH------cCCC-----hHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHH-HH
Q psy6621          56 ---------------------AAHQ------HGID-----PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYY-KW  102 (133)
Q Consensus        56 ---------------------~a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~-~~  102 (133)
                                           .|++      .|.+     ++++++...+.+++++++|||.+|.  ....+  .|. +.
T Consensus       226 ~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~--~~~ES--~~~~~~  301 (607)
T 1f7u_A          226 RINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDV--YSGES--QVSKES  301 (607)
T ss_dssp             HHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSE--EEEGG--GCCHHH
T ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccee--ecCcc--hhhhhH
Confidence                                 1222      2433     4678999999999999999999872  11221  233 67


Q ss_pred             HHHHHHHHHHCCCeEEeceeeeecCC
Q psy6621         103 TQALFLDLYHAGLVYRKEVDYSQNLP  128 (133)
Q Consensus       103 v~~~f~~L~~~G~iy~~~~~v~~~~~  128 (133)
                      +.++++.|.++|++|+.++.++++..
T Consensus       302 ~~~vi~~L~~kG~~ye~dGa~~~~~~  327 (607)
T 1f7u_A          302 MLKAIDLFKEKGLTHEDKGAVLIDLT  327 (607)
T ss_dssp             HHHHHHHHHHTTCEEEETTEEEEEGG
T ss_pred             HHHHHHHHHhCCCEEEECCcEEEEec
Confidence            89999999999999999999998754

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=99.65  E-value=8.1e-16  Score=125.02  Aligned_cols=116  Identities=14%  Similarity=0.008  Sum_probs=91.2

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHH-------HH--cCCC---h------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAA-------HQ--HGID---P------   64 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a-------~~--~g~~---~------   64 (133)
                      .|||||++|+||+|+.+++|+++|++++.|     ++|.....+.|.|.++...+       .+  .|.+   |      
T Consensus        38 s~n~~~~~h~gh~r~~~~gd~~~r~~~~~G-----~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g  112 (464)
T 3fnr_A           38 SANPTGPLHIGHARGAVFGDTLTRLARHLG-----YKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKG  112 (464)
T ss_dssp             CCCSSSSCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCS
T ss_pred             CCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCc
Confidence            589999999999999999999999999999     99999999999999874332       11  1211   0      


Q ss_pred             ----------------------------HHHHHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHHHHHHHHHCCC
Q psy6621          65 ----------------------------REWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQALFLDLYHAGL  115 (133)
Q Consensus        65 ----------------------------~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~~f~~L~~~G~  115 (133)
                                                  +..++...+.+++++++|||.+| |..+.    .-|. .+.++++.|.++|+
T Consensus       113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Es----s~~~-~~~~vv~~L~~~g~  187 (464)
T 3fnr_A          113 EYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSER----SYYD-ALNATLESLKEHKG  187 (464)
T ss_dssp             HHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGG----GGST-THHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHH----HHHH-HHHHHHHHHHHCCC
Confidence                                        11234456789999999999998 33331    1222 68999999999999


Q ss_pred             eEEeceeeeecCC
Q psy6621         116 VYRKEVDYSQNLP  128 (133)
Q Consensus       116 iy~~~~~v~~~~~  128 (133)
                      +|++++.++++..
T Consensus       188 ~~e~dGa~~~~~~  200 (464)
T 3fnr_A          188 IYEQEGKIWLASS  200 (464)
T ss_dssp             EEEETTEEEECGG
T ss_pred             EEEeCCeEEEEec
Confidence            9999999988653

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=99.37  E-value=5.2e-13  Score=103.10  Aligned_cols=91  Identities=15%  Similarity=0.141  Sum_probs=69.4

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|+|||.|||||+++++.....+|     +     +.+.++.-+||.+.+             +...++.+.|.++|++
T Consensus        10 FAPsPtG~LHiG~~rtal~n~l~Ar-----~-----~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~   66 (298)
T 1nzj_A           10 FAPSPSGELHFGSLIAALGSYLQAR-----A-----RQGRWLVRIEDIDPP-------------REVPGAAETILRQLEH   66 (298)
T ss_dssp             ECCCTTSCCCHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHH
T ss_pred             ECcCCCCCccHHHHHHHHHHHHHHH-----h-----cCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHH
Confidence            7899999999999999986655555     4     445677777775432             2336789999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|-. ++..  .++.+..++++.+|.++|++|.
T Consensus        67 LGl~~D~~-~~~q--Ser~~~y~~~~~~L~~~G~aY~  100 (298)
T 1nzj_A           67 YGLHWDGD-VLWQ--SQRHDAYREALAWLHEQGLSYY  100 (298)
T ss_dssp             TTCCCSSC-CEEG--GGCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCCCCC-Ceee--eCCHHHHHHHHHHHHHcCCccc
Confidence            99965521 2222  2367889999999999999997

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.36  E-value=7.7e-13  Score=109.17  Aligned_cols=90  Identities=8%  Similarity=0.005  Sum_probs=72.7

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|+|||.||||||+++++...++|     +     +.+.++..+||.+.+             +...++.+.|.++|++
T Consensus       101 FaPsPtG~LHIGhaRtal~n~l~Ar-----~-----~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~w  157 (553)
T 3aii_A          101 FAPNPSGPLHIGHARAAILNHEYAR-----K-----YDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEW  157 (553)
T ss_dssp             ECCCSSSSCBHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHH
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHH
Confidence            7999999999999999998777776     4     555677788887542             2255889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  ..  +...+|.+...+++.+|+++|++|.
T Consensus       158 LGl~wd--~~--~~qSdr~~~y~~~~~~Li~~G~AY~  190 (553)
T 3aii_A          158 LGVEWD--ET--VIQSDRMETYYEYTEKLIERGGAYV  190 (553)
T ss_dssp             HTCCCS--EE--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCC--CC--cccccCHHHHHHHHHHHHHcCCcee
Confidence            999554  33  3334588999999999999999996

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=99.34  E-value=2.2e-12  Score=106.47  Aligned_cols=91  Identities=11%  Similarity=0.164  Sum_probs=71.3

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||||++++...+||  ...|        .++..+||.+.             .+.+.++.+.|.++|++
T Consensus        31 FaPSPtG~LHIGhaRtal~n~l~Ar--~~gG--------~fiLRieDTD~-------------~R~~~e~~~~I~edL~w   87 (553)
T 1qtq_A           31 FPPEPNGYLHIGHAKSICLNFGIAQ--DYKG--------QCNLRFDDTNP-------------VKEDIEYVESIKNDVEW   87 (553)
T ss_dssp             ECCCTTSCCBHHHHHHHHHHHHHHH--HTTC--------EEEEEECCCCG-------------GGCCHHHHHHHHHHHHH
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH--HcCC--------EEEEEECCCCc-------------hhcCHHHHHHHHHHHHH
Confidence            7999999999999999999888887  3444        56666676643             34567889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|- .+++  ..+|.+...+...+|+++|++|.
T Consensus        88 LGl~wde-~~~~--qSer~~~~~~~a~~Li~~G~AY~  121 (553)
T 1qtq_A           88 LGFHWSG-NVRY--SSDYFDQLHAYAIELINKGLAYV  121 (553)
T ss_dssp             TTCCCSS-SCEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCCC-CCee--hcccHHHHHHHHHHHHHCCCcee
Confidence            9995542 3333  33577878888899999999996

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=99.31  E-value=3.6e-12  Score=106.25  Aligned_cols=92  Identities=9%  Similarity=0.034  Sum_probs=71.2

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|+|||+|||||+|++++.+.+||  ...|     .-++.+   +|             +++..-..++.+.|.++|++
T Consensus       134 FaPsPTG~LHiG~artAl~n~l~Ar--~~~G-----~~ilRi---eD-------------tD~~r~~~~~~~~I~~dL~w  190 (592)
T 3al0_C          134 FAPSPTGHLHVGGARTALFNWMFAR--KEGG-----KFILRI---ED-------------TDTERSSREYEQQILESLRW  190 (592)
T ss_dssp             ECCCSSSCCBHHHHHHHHHHHHHHH--HHTC-----EEEECB---CC-------------CCSSSCCHHHHHHHHHHHHH
T ss_pred             ECCCCCCCccHHHHHHHHHHHHHHH--hcCC-----cEEEEe---cC-------------cChhhccHHHHHHHHHHHHH
Confidence            7899999999999999999999999  4677     555444   43             23444566889999999999


Q ss_pred             cCcccccCC-------ceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWES-------ELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~-------~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|-..       ++.  ..++.+..++.+.+|.++|++|.
T Consensus       191 lGl~~D~~~~~gG~~gp~~--qSer~~~y~~~~~~L~~~G~aY~  232 (592)
T 3al0_C          191 CGLDWDEGPDIGGDFGPYR--QSERLEIYREYAEKLVEDKRAYY  232 (592)
T ss_dssp             TTCCCSBBTTTBCTTCCCB--STTCHHHHHHHHHHHHHTTTEEE
T ss_pred             cCCCCCCCCCcCCCCCCee--eeCCHHHHHHHHHHHHHcCCceE
Confidence            999654211       223  33456889999999999999997

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=99.28  E-value=8.8e-12  Score=101.71  Aligned_cols=94  Identities=9%  Similarity=0.009  Sum_probs=71.2

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|+|||+|||||+|++++.|.+||.  ..|     .-|+.+   +|.+             +.....++.+.|.++|++
T Consensus        18 faPsPTG~LHiG~aRtAl~n~~~Ar~--~~G-----~~iLRi---eDtD-------------~~r~~~~~~~~I~~~l~w   74 (481)
T 2o5r_A           18 FAPSPTGFLHVGGARTALFNFLFARK--EKG-----KFILRI---EDTD-------------LERSEREYEEKLMESLRW   74 (481)
T ss_dssp             ECCCCCSCCBHHHHHHHHHHHHHHHH--HTC-----EEEECB---CCSS-------------CCSGGGHHHHHHHHHHHH
T ss_pred             ECCCCCCCcCHHHHHHHHHHHHHHHH--cCC-----eEEEEE---ecCC-------------ccccHHHHHHHHHHHHHH
Confidence            78999999999999999999999995  678     766553   3332             334446778889999999


Q ss_pred             cCcccccCCc-----eecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESE-----LATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~-----~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|-...     -.....++.+..+++.++|+++|.+|.
T Consensus        75 lGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~  116 (481)
T 2o5r_A           75 LGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYY  116 (481)
T ss_dssp             HTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeE
Confidence            9995542110     012244577889999999999999985

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=99.27  E-value=6e-12  Score=107.98  Aligned_cols=91  Identities=14%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++...++|     +     +.+.++..+||.+.             .+...++.+.|.++|++
T Consensus        71 FaPSPtG~LHIGhARtAL~n~l~Ar-----~-----~gG~fiLRIEDTD~-------------~R~~~e~~~~IledL~w  127 (851)
T 2hz7_A           71 FPPDPSGYAHLGHVFASLLDFNTAR-----Q-----YGGQFNLRMDDTNP-------------ELARQEYVDSIADDLKW  127 (851)
T ss_dssp             ECCCSSSCCBHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCCCT-------------TTCCHHHHHHHHHHHHH
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEEECcCCc-------------ccccHHHHHHHHHHHHH
Confidence            7899999999999999999877777     3     44566677777643             23356889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..| +.++  ...+|.+...+++.+|+++|++|.
T Consensus       128 LGl~wd-e~~~--~qSer~d~y~e~a~~LI~~G~AY~  161 (851)
T 2hz7_A          128 LGLDWG-EHFY--YASDYFDRYYAYAEQLIRQGDAYV  161 (851)
T ss_dssp             HTCCCT-TCEE--EGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCC-CCcc--cHhhhHHHHHHHHHHHHHCCCcEe
Confidence            999554 2333  334588999999999999999996

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=99.25  E-value=1.8e-11  Score=99.97  Aligned_cols=91  Identities=12%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+|+++....++|  ...|     .-+   .-+||.             ++.....++.+.|.++|++
T Consensus        30 FAPSPTG~lHiG~~rtal~n~l~Ar--~~~G-----~fi---lRieDt-------------D~~R~~~~~~~~i~~dl~w   86 (490)
T 4g6z_A           30 FAPSPTGFIHLGNIRSALYPWAFAR--KMKG-----TFV---LRIEDT-------------DVERSSQEAVDAILEGMAW   86 (490)
T ss_dssp             ECCCCCSCCBHHHHHHHHHHHHHHH--HTTC-----EEE---EEECCC-------------CGGGCCHHHHHHHHHHHHH
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH--hcCC-----eEE---EEeCCC-------------CcccccHHHHHHHHHHHHH
Confidence            7899999999999999999998888  4456     444   444443             2333456889999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  .. .....++.+..++++.+|.++|++|.
T Consensus        87 lGl~~d--~~-~~~qS~r~~~y~~~~~~Li~~G~aY~  120 (490)
T 4g6z_A           87 LGLDYD--EG-PYYQMQRMDRYREVLAQMQEKGLVYP  120 (490)
T ss_dssp             TTCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCC--CC-CcccccCHHHHHHHHHHHHHCCCEEe
Confidence            999544  32 23334578899999999999999994

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=99.25  E-value=4.7e-12  Score=103.57  Aligned_cols=91  Identities=11%  Similarity=0.063  Sum_probs=69.0

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+|+++....++|  ...|        .++.-+||.+.             .....++.+.|.++|++
T Consensus         6 FAPSPtG~lHiG~artal~n~l~Ar--~~~G--------~filRieDtD~-------------~R~~~~~~~~i~~dL~w   62 (492)
T 2cfo_A            6 LAPSPTGNLHIGTARTAVFNWLYAR--HRGG--------KFILRIEDTDR-------------ERSRPEYTENILEGLQW   62 (492)
T ss_dssp             ECCCTTSCCBHHHHHHHHHHHHHHH--HTTC--------EEEEEECCCSS-------------SSCCHHHHHHHHHHHHH
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH--hcCC--------eEEEEEeeCCc-------------cccchHHHHHHHHHHHH
Confidence            7899999999999999998766666  3344        56666666542             22236789999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+.  |+.. .....++.+..++++.+|.++|++|.
T Consensus        63 LGl~--wde~-~~~QS~r~~~y~~~~~~Li~~G~AY~   96 (492)
T 2cfo_A           63 LGLT--WDEG-PYFQSDRLDLYRQAIQTLLDKGLAYY   96 (492)
T ss_dssp             TTCC--CSEE-EEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCC--CCCC-CccccCCHHHHHHHHHHHHHCCCceE
Confidence            9994  4442 22233477899999999999999996

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}

Probab=99.21  E-value=1.5e-11  Score=101.01  Aligned_cols=94  Identities=13%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.||||||+++++.-.+||  +..|     .-++   =+|             ++++.....++.+.|.++|++
T Consensus        29 FAPsPtG~LHiG~artAl~n~~~Ar--~~~G-----~fiL---Rie-------------DtD~~R~~~~~~~~I~~~L~w   85 (512)
T 4gri_A           29 YAPSPTGLQHIGGIRTALFNYFFAK--SCGG-----KFLL---RIE-------------DTDQSRYSPEAENDLYSSLKW   85 (512)
T ss_dssp             ECCCSSSCCBHHHHHHHHHHHHHHH--HTTC-----EEEE---CBC-------------CCCTTSCCHHHHHHHHHHHHH
T ss_pred             eCcCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEE---EeC-------------cCCCCcCCHHHHHHHHHHHHH
Confidence            7899999999999999999999998  6677     4332   223             445566667889999999999


Q ss_pred             cCcccccCC----ce-ecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWES----EL-ATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~----~~-~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|-..    ++ ...+.++.+..++...+|+++|++|.
T Consensus        86 lGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~  127 (512)
T 4gri_A           86 LGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY  127 (512)
T ss_dssp             HTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence            999665211    01 12334566788899999999999995

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=99.18  E-value=2.6e-11  Score=99.06  Aligned_cols=92  Identities=9%  Similarity=0.022  Sum_probs=70.5

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+++++..-.+||  ...|     .-+   .=+||.             ++.....++.+.|.++|++
T Consensus        30 FAPsPtG~LHiG~~rtal~n~l~Ar--~~~G-----~fi---lRieDt-------------D~~R~~~~~~~~I~~dL~w   86 (488)
T 3afh_A           30 FAPSPTGHLHVGGARTALFNWMFAR--KEGG-----KFI---LRIEDT-------------DTERSSREYEQQILESLRW   86 (488)
T ss_dssp             ECCCCSSSCBHHHHHHHHHHHHHHH--HHTC-----EEE---ECBCCC-------------CTTTCCHHHHHHHHHHHHH
T ss_pred             ECCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEE---EEEeeC-------------CcccccHHHHHHHHHHHHH
Confidence            7899999999999999999988888  5566     433   334443             4444566889999999999


Q ss_pred             cCcccccCCce-------ecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESEL-------ATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~-------~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  ...       +....++.+..++.+.+|.++|++|.
T Consensus        87 lGl~wD--e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~  128 (488)
T 3afh_A           87 CGLDWD--EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY  128 (488)
T ss_dssp             TTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCC--cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEe
Confidence            999654  421       12334567889999999999999997

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=99.15  E-value=2.2e-11  Score=99.08  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=71.1

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++.-.+||  ...|     .   ++.-+||.             ++.....++.+.|.++|++
T Consensus         6 FaPsPtG~LHiG~~rtal~n~l~Ar--~~~G-----~---filRieDt-------------D~~R~~~~~~~~I~~dl~w   62 (468)
T 1j09_A            6 IAPSPTGDPHVGTAYIALFNYAWAR--RNGG-----R---FIVRIEDT-------------DRARYVPGAEERILAALKW   62 (468)
T ss_dssp             ECCCCSSSCBHHHHHHHHHHHHHHH--HTTC-----E---EEECBCCC-------------CTTSCCTTHHHHHHHHHHH
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHH--HcCC-----E---EEEEeCcC-------------CCcccChHHHHHHHHHHHH
Confidence            7899999999999999999999988  5566     4   33444444             3344456789999999999


Q ss_pred             cCcccccCCce-------ecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESEL-------ATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~-------~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  ...       +....++.+..++...+|.++|++|.
T Consensus        63 lGl~wd--~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~  104 (468)
T 1j09_A           63 LGLSYD--EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR  104 (468)
T ss_dssp             TTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred             cCCCCC--CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence            999544  331       13444578899999999999999995

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=99.11  E-value=7.2e-11  Score=96.64  Aligned_cols=92  Identities=14%  Similarity=0.119  Sum_probs=72.0

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||+++++..-.+||  ...|     .-++.   +             +++++.....++.+.|.++|++
T Consensus        11 FAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG-----~fiLR---i-------------eDtD~~R~~~~~~~~I~~~L~w   67 (498)
T 2ja2_A           11 FCPSPTGTPHVGLVRTALFNWAYAR--HTGG-----TFVFR---I-------------EDTDAQRDSEESYLALLDALRW   67 (498)
T ss_dssp             ECCCSSSSCBHHHHHHHHHHHHHHH--HHTC-----EEEEC---B-------------CCCCTTTCCHHHHHHHHHHHHH
T ss_pred             ECcCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEE---E-------------CcCCCcccChHHHHHHHHHHHH
Confidence            7899999999999999999999999  6677     43322   2             2345666667889999999999


Q ss_pred             cCcccccCCc-------eecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESE-------LATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~-------~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  .-       -.....++.+..++...+|+++|++|.
T Consensus        68 lGl~wD--egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~  109 (498)
T 2ja2_A           68 LGLDWD--EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYH  109 (498)
T ss_dssp             HTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCcC--CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEE
Confidence            999554  30       123344577899999999999999996

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=95.60  E-value=0.016  Score=44.85  Aligned_cols=65  Identities=8%  Similarity=0.049  Sum_probs=41.1

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.|||||..+.+..  +.++++  |     +++.+..| |.|++       -...++++ ..++...+.+++.++|+
T Consensus        11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g-----~~~~~~ia-D~ha~-------~~~~~~~~-l~~~~~~~~~~~lA~Gl   72 (322)
T 3tzl_A           11 QPSGDLHIGNYFGAIKQ--MVDAQE--K-----SQMFMFIA-NYHAM-------TSSQDGEK-LKQNSLKAAAAFLSLGI   72 (322)
T ss_dssp             CCSSCCBHHHHHHTHHH--HHHTTT--T-----SCCEEEEC-HHHHT-------TTCCCHHH-HHHHHHHHHHHHHHTTC
T ss_pred             CCCccccHHHHHHHHHH--HHHHhc--C-----CCEEEEEe-cCeee-------cCCCCHHH-HHHHHHHHHHHHHHcCC
Confidence            48999999999976544  455554  8     88876655 33321       11224444 35556677777778888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        73 dp~   75 (322)
T 3tzl_A           73 DPQ   75 (322)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            654

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=95.51  E-value=0.032  Score=43.38  Aligned_cols=67  Identities=13%  Similarity=0.047  Sum_probs=40.7

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.|||||..+.+.  -+.+++ ..|     ++|.+..| |.|++-      -...+|++ .+++.....+++.++|+
T Consensus        20 ~PTG~lHLGn~~g~l~--~~~~lQ-~~G-----~~~~~~Ia-D~ha~t------~~~~dp~~-~~~~~~~~~~~~lA~Gl   83 (340)
T 2g36_A           20 RPTGKLHIGHLVGALE--NWVKLQ-EEG-----NECFYFVA-DWHALT------THYDDVSK-LKEYTRDLVRGFLACGI   83 (340)
T ss_dssp             CCCSSCBHHHHHTHHH--HHHHHH-HTT-----CEEEEEEC-HHHHHH------HHTTCCTT-HHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccHHhHHHHHH--HHHHHH-HCC-----CCEEEEEe-cceeec------CCCCCHHH-HHHHHHHHHHHHHHhCC
Confidence            4899999999998653  233333 468     88876652 223221      11235554 34555666677888888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        84 dp~   86 (340)
T 2g36_A           84 DPE   86 (340)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            654

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=95.46  E-value=0.056  Score=41.53  Aligned_cols=66  Identities=9%  Similarity=-0.015  Sum_probs=39.7

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.|||||+. .+.  .+.++++ .|     +++.+..|=. |+.     ... ..++++ +.++...+.+++.++|+
T Consensus        40 ~PTg~lHlG~l~-~l~--~~~~lq~-~g-----~~~~~~i~D~-~a~-----~~d-~~~~~~-i~~~~~~~~~~~~a~Gl  102 (323)
T 2cyb_A           40 EPSGEIHLGHMM-TVQ--KLMDLQE-AG-----FEIIVLLADI-HAY-----LNE-KGTFEE-IAEVADYNKKVFIALGL  102 (323)
T ss_dssp             CCCSCCBHHHHH-HHH--HHHHHHH-TT-----CEEEEEECHH-HHH-----HTT-CCCHHH-HHHHHHHHHHHHHHTTC
T ss_pred             CCCCcchHHHHH-HHH--HHHHHHH-CC-----CcEEEEECCc-eeE-----cCC-CCCHHH-HHHHHHHHHHHHHHhCC
Confidence            489999999963 332  3444444 47     7765554321 110     011 125554 57777889999999998


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       103 dp~  105 (323)
T 2cyb_A          103 DES  105 (323)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            544

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=95.12  E-value=0.046  Score=43.04  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=41.6

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||..+..    -.+++...|     ++|.+..+ |.|..      --...+..+..+.+.....+++-++|+
T Consensus        78 ~PTG~lHLGhyv~~~----~~~~lq~~~-----~~~~~~Ia-D~ha~------t~~~~~~~e~~r~~~~~~~~~~lA~Gl  141 (372)
T 3a04_A           78 MPSGKFHFGHKLTVD----QLIYLQKNG-----FKVFVAIA-DAEAF------AVRRIGREEAVRIAVEEYIANMIALGL  141 (372)
T ss_dssp             CCCSCCBHHHHHHHH----HHHHHHHTT-----CEEEEEEC-HHHHH------HTTCCCHHHHHHHHHHTTHHHHHHHTC
T ss_pred             CCCcHhHHHHHHHHH----HHHHHHhCC-----CeEEEEEe-cchhh------ccCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            489999999988542    234444568     99866543 33311      112233445556666777778888888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       142 DP~  144 (372)
T 3a04_A          142 DPK  144 (372)
T ss_dssp             CTT
T ss_pred             ChH
Confidence            665

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=95.03  E-value=0.077  Score=41.15  Aligned_cols=68  Identities=9%  Similarity=-0.016  Sum_probs=38.8

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceee-ecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVF-QPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~-~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|||.|||||..+.+.  -+.++++..+     ++|. ++-++  |++-.     ..+-+|+ ..+++...+.+++.++|
T Consensus         9 ~PTg~lHlGh~~g~l~--~~~~lQ~~G~-----~~~~~~IaD~--~a~~~-----~~~~~~~-~i~~~~~~~~~~~la~G   73 (337)
T 2el7_A            9 QPSGEIHIGNYLGAIK--QWVAIGEKLG-----RDAFFCIVDY--HALTN-----PLAYDPS-TLAQRTFEAALVNIAAG   73 (337)
T ss_dssp             CSCSCCBHHHHHTHHH--HHHHHHHHHG-----GGEEEEECGG--GGGGS-----TTTSCHH-HHHHHHHHHHHHHHHHT
T ss_pred             CCCCcccHHHHHHHHH--HHHHHHhcCC-----CCEEEEEeCc--eeecC-----CCCCCHH-HHHHHHHHHHHHHHHhC
Confidence            4899999999997752  2456666553     4443 33333  22200     0023343 44555566677788888


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus        74 ldp~   77 (337)
T 2el7_A           74 LDPE   77 (337)
T ss_dssp             CCTT
T ss_pred             CChh
Confidence            8654

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=94.89  E-value=0.043  Score=42.44  Aligned_cols=65  Identities=12%  Similarity=0.112  Sum_probs=40.4

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.|||||..+.+..  +.+++  .|     +++.+..| |.|++-       -..+++ -..++...+.+++.++|+
T Consensus         9 ~PTG~lHlGn~vg~l~~--~~~lQ--~g-----~~~~~~Ia-D~ha~~-------~~~~~e-~i~~~~~~~~~~~la~Gl   70 (328)
T 1i6k_A            9 QPSGVITIGNYIGALRQ--FVELQ--HE-----YNCYFCIV-DQHAIT-------VWQDPH-ELRQNIRRLAALYLAVGI   70 (328)
T ss_dssp             CCCSCCBHHHHHHTHHH--HHHHT--TT-----SEEEEEEC-HHHHTT-------SCCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccHHHHHHHHHH--HHHHH--cC-----CcEEEEEe-Cceeec-------CCCCHH-HHHHHHHHHHHHHHHhCC
Confidence            48999999999987632  33443  38     88865554 212110       013554 345566688888889998


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        71 dp~   73 (328)
T 1i6k_A           71 DPT   73 (328)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            654

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=94.81  E-value=0.042  Score=43.49  Aligned_cols=32  Identities=13%  Similarity=-0.012  Sum_probs=21.8

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG   45 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G   45 (133)
                      -|||.|||||+++++.   +.++++ .|     +++.+..|
T Consensus        47 ~PTG~LHlG~~~~al~---~~~~~q-~g-----~~~ii~I~   78 (394)
T 2dlc_X           47 APTGRPHCGYFVPMTK---LADFLK-AG-----CEVTVLLA   78 (394)
T ss_dssp             CCCSCCBGGGHHHHHH---HHHHHH-TT-----CEEEEEEC
T ss_pred             CCCCCccHHHHHHHHH---HHHHHH-cC-----CcEEEEEc
Confidence            3799999999887654   344444 67     77655444

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=94.80  E-value=0.053  Score=41.60  Aligned_cols=64  Identities=13%  Similarity=-0.011  Sum_probs=39.3

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.||||| ...+..  +.++++ .|     +++.+..|=++ +.     .-. ..+++ -++++...+.+++.++|+
T Consensus        36 ~PTg~lHlGh-l~~l~~--~~~lQ~-~g-----~~~~~~i~D~~-a~-----~~~-~~~~e-~i~~~~~~~~~~~~a~G~   98 (314)
T 2zp1_A           36 EPSGKIHLGH-YLQIKK--MIDLQN-AG-----FDIIILLADLA-AY-----LNQ-KGELD-EIRKIGDYNKKVFEAMGL   98 (314)
T ss_dssp             CCCSSCBHHH-HHHHHH--HHHHHH-TT-----EEEEEEECHHH-HH-----HTT-CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcchhh-HHHHHH--HHHHHH-CC-----CCEEEEEecce-Ee-----cCC-CCCHH-HHHHHHHHHHHHHHhcCC
Confidence            3799999999 554433  445444 58     88866654221 11     001 12444 446666889999999997


Q ss_pred             c
Q psy6621          85 K   85 (133)
Q Consensus        85 ~   85 (133)
                      .
T Consensus        99 d   99 (314)
T 2zp1_A           99 K   99 (314)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=94.78  E-value=0.088  Score=41.34  Aligned_cols=31  Identities=6%  Similarity=-0.070  Sum_probs=22.0

Q ss_pred             CCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621           6 EEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG   45 (133)
Q Consensus         6 png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G   45 (133)
                      |||.|||||..+.+.   +.++++ .|     +++.+..|
T Consensus        44 PTG~lHlG~~~~~l~---~~~~~q-~g-----~~~i~~I~   74 (372)
T 1n3l_A           44 TTGKPHVAYFVPMSK---IADFLK-AG-----CEVTILFA   74 (372)
T ss_dssp             CSSCCBGGGHHHHHH---HHHHHH-TT-----CEEEEEEC
T ss_pred             CCCcccHHHHHHHHH---HHHHHH-CC-----CCEEEEEc
Confidence            899999999887655   444444 67     77765544

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=94.65  E-value=0.097  Score=41.50  Aligned_cols=87  Identities=9%  Similarity=0.004  Sum_probs=48.9

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||..+.+..   .+++...|     .+|.+..+ |.|+.-     -..+.++++ +.++...+.+++.++|+
T Consensus        81 ~PTG~lHLGh~v~~~~~---~~lQ~~~g-----~~~~i~Ia-D~ha~~-----~~~~~~~e~-i~~~~~~~~~~~lA~Gl  145 (392)
T 3jxe_A           81 GPSGPMHIGHIIPFFAT---KWLQEKFG-----VNLYIQIT-DDEKFL-----FKENLTFDD-TKRWAYDNILDIIAVGF  145 (392)
T ss_dssp             CCSSCCBHHHHHHHHHH---HHHHHHHC-----CEEEEEEC-HHHHHH-----HCSSCCHHH-HHHHHHHHHHHHHTTCC
T ss_pred             CCCCchhHHHHHHHHHH---HHHHHhcC-----CceEEEec-chHHhh-----cCCCCCHHH-HHHHHHHHHHHHHHhCc
Confidence            48899999999876421   22333368     88877766 433210     112355554 45556677778888888


Q ss_pred             ccccCCce-ecCChhHHHHHHHH
Q psy6621          85 KFNWESEL-ATCDPKYYKWTQAL  106 (133)
Q Consensus        85 ~~d~~~~~-~T~~~~~~~~v~~~  106 (133)
                      ..+-...+ .+.-+.|.+.++.+
T Consensus       146 Dp~kt~i~~qS~~~~~~~~~~~l  168 (392)
T 3jxe_A          146 DPDKTFIFQNSEFTKIYEMAIPI  168 (392)
T ss_dssp             CTTSEEEEETTTSTHHHHHHHHH
T ss_pred             CccceEEEECchhHHHHHHHHHH
Confidence            65421111 12224455555443

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=94.65  E-value=0.038  Score=43.35  Aligned_cols=68  Identities=10%  Similarity=0.001  Sum_probs=39.8

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.||||| ...+..  +.++++ .|     +++.+..| |.|+.-    ....|.+++++ +++...+.+++.++|+
T Consensus        43 ~PTg~lHlG~-l~~l~~--~~~lQ~-~G-----~~~~~~ia-D~~a~~----~~ps~~~~e~i-~~~~~~~~~~~la~G~  107 (364)
T 2cya_A           43 EPSGVAHIGW-LVWMYK--VKDLVE-AG-----VDFSVLEA-TWHAYI----NDKLGGDMDLI-RAAARIVRRVMEAAGV  107 (364)
T ss_dssp             CCCSSCBTHH-HHHHHH--HHHHHH-TT-----CEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTTC
T ss_pred             CCCCCccHhH-HHHHHH--HHHHHH-CC-----CCEEEEEe-Ccchhh----CCCCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence            4899999999 554433  445444 58     88876655 222210    11113354444 4455677788888888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       108 dp~  110 (364)
T 2cya_A          108 PVE  110 (364)
T ss_dssp             CGG
T ss_pred             Ccc
Confidence            654

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=94.35  E-value=0.067  Score=42.35  Aligned_cols=67  Identities=10%  Similarity=0.016  Sum_probs=38.3

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.|||||..+..   .+.++++..|     ..|.++.+-+ +      +......+++++ +++...+.+++-++|+
T Consensus        90 ~PTG~lHLGh~v~~~---~~~~lQ~~~g-----~~v~i~I~D~-~------a~~~r~~~~e~i-~~~~~~~~~~~lA~Gl  153 (386)
T 3hzr_A           90 YPQKEVALEEYITLE---FARYLQDAFN-----IQVIIQILDD-I------KVLNREATINEA-SKMSNDLMKYILAFGF  153 (386)
T ss_dssp             CCCSSCBGGGHHHHH---HHHHHHHHHC-----CEEEEEECHH-H------HHHTTSCCHHHH-HHHHHHHHHHHHHTCC
T ss_pred             CCCCCccHHHHHHHH---HHHHHHHhcC-----CeEEEEeCch-H------HhhcCCCCHHHH-HHHHHHHHHHHHHcCC
Confidence            489999999977752   2333444457     6776662221 1      122222555544 4445566777777777


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       154 Dp~  156 (386)
T 3hzr_A          154 NED  156 (386)
T ss_dssp             CGG
T ss_pred             CCc
Confidence            554

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=94.23  E-value=0.071  Score=41.50  Aligned_cols=65  Identities=8%  Similarity=-0.036  Sum_probs=40.6

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||..+.+-.  +.+++.  +     +++.+..+ |.|.+       -...+|+ ...++...+.+++.+.|+
T Consensus        14 ~PTG~lHLGhy~g~l~~--~~~lQ~--~-----~~~~~~ia-D~ha~-------~~~~~~~-~~~~~~~~~~~~~lA~Gl   75 (341)
T 3sz3_A           14 QPSGELSIGNYLGALRQ--WQQMQD--D-----YDCQYCVV-DLHAI-------TVRQDPQ-ALHEATLDALAICLAVGV   75 (341)
T ss_dssp             CSSSCCBHHHHHHTGGG--HHHHHH--H-----SEEEEEEC-HHHHT-------TSCCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccHHHHHHHHHH--HHHHHh--c-----CeEEEEEe-cceeE-------cCCCCHH-HHHHHHHHHHHHHHHcCC
Confidence            48999999999986522  334443  6     77665543 33321       1124554 445666678888888998


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        76 Dp~   78 (341)
T 3sz3_A           76 DPK   78 (341)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            765

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=94.11  E-value=0.081  Score=41.93  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.+||||..+.+..  +.+++  .|     ++|.+..+ |.|.+       -...+|.++ .++...+..++.+.|+
T Consensus        43 ~PTG~lHLGhyvGal~~--~~~LQ--~~-----~~~~~~Ia-D~hAl-------t~~~~~~~l-r~~~~~~aa~~lA~Gl  104 (388)
T 3prh_A           43 QPSGSVTLGNYIGAMKQ--FVELQ--HD-----YNSYFCIV-DQHAI-------TVPQDRLEL-RKNIRNLAALYLAVGL  104 (388)
T ss_dssp             CCCSCCBHHHHHHTHHH--HHHTT--TT-----SEEEEEEC-HHHHT-------TSCCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred             CCCCcchHHHHHHHHHH--HHHHH--cc-----CcEEEEEe-cceee-------ecCCCHHHH-HHHHHHHHHHHHHhCC
Confidence            48999999999887542  22222  48     88876553 43322       113455544 5555677888888998


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       105 Dp~  107 (388)
T 3prh_A          105 DPE  107 (388)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            765

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=93.75  E-value=0.078  Score=41.30  Aligned_cols=65  Identities=14%  Similarity=0.104  Sum_probs=39.1

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.|||||..+.+..  +.+++.  |     +++.+..+= .|++       -...+|+++ .++...+.+++.+.|+
T Consensus        12 ~PTG~lHLGn~vg~l~~--~~~lQ~--~-----~~~~~~IaD-~ha~-------~~~~d~~~i-~~~~~~~~~~~lA~Gl   73 (348)
T 2yy5_A           12 QASGKQHLGNYLGVMQS--LIELQE--Q-----CQLFVFVAD-LHSI-------TVDFQPQAL-KQNNFDLVRTLLAVGL   73 (348)
T ss_dssp             CCCTTCBHHHHHHTGGG--HHHHHH--H-----SEEEEEECH-HHHT-------TSCCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred             CCCCcccHHHHHHHHHH--HHHHHh--C-----CcEEEEEcC-hhhc-------cCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence            48999999999987632  334443  7     777554432 1111       111455544 4456677778888888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        74 dp~   76 (348)
T 2yy5_A           74 DPQ   76 (348)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            665

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=93.70  E-value=0.27  Score=39.71  Aligned_cols=68  Identities=10%  Similarity=-0.048  Sum_probs=40.7

Q ss_pred             CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|| |.|||||..+.+   .+.+++..-|     ..|.+.     .|++ +....+...+++++ .++...+.+++.++|
T Consensus        99 dPTagsLHLGH~v~~~---~l~~lQ~~~g-----~~v~I~-----IgD~-~a~~~r~~lt~E~I-~~n~~~~~~~~lA~G  163 (451)
T 3foc_A           99 GPSSGALHLGHLLPFI---FTKYLQDAFK-----CYVVIQ-----ITDD-EKFLRNRSLSYAEV-DSYTRENIKDIIACG  163 (451)
T ss_dssp             CCCSSCCBHHHHHHHH---HHHHHHHHHT-----CEEEEE-----ECHH-HHHHHCTTCCHHHH-HHHHHHHHHHHHTTT
T ss_pred             CCCCCCccHHHHHHHH---HHHHHHHccC-----ceEEEE-----eeCc-HHhhcccCCCHHHH-HHHHHHHHHHHHHcC
Confidence            488 799999977654   2334555557     666664     3444 11112224565544 556667778888888


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       164 lDpe  167 (451)
T 3foc_A          164 FDPD  167 (451)
T ss_dssp             CCGG
T ss_pred             CCCC
Confidence            7543

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=93.49  E-value=0.088  Score=41.42  Aligned_cols=68  Identities=9%  Similarity=-0.018  Sum_probs=37.5

Q ss_pred             CCCCcCcchHHHHHHHHH-HHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEELTCLGGVVVKTHSG-AECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~D-il~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|||.|||||.   ++.- .+.+++ ..|     ++|.+..| |-|+.-    ....|.++.++ +++...+.+.+.++|
T Consensus        64 ~PTg~lHlG~g---vl~~~~~~~lQ-~~G-----~~~~~lIa-D~ha~i----~d~~~~~~~~i-~~~~~~~~~~~~a~G  128 (373)
T 3vgj_A           64 EPSGRMHIAQG---LLKSIIVNKLT-SNG-----CTFIFWIA-DWFAHL----NNKMSGDLKKI-KKVGSYFIEVWKSCG  128 (373)
T ss_dssp             CCCSSCBHHHH---HHHHHHHHHHH-TTT-----CEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTT
T ss_pred             CCCCCceehhh---HHHHHHHHHHH-HCC-----CcEEEEEe-cceeEe----cCCCCCCHHHH-HHHHHHHHHHHHHcC
Confidence            38999999992   2222 244544 458     88776665 333220    01123344433 444555667788888


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       129 ~dp~  132 (373)
T 3vgj_A          129 MNME  132 (373)
T ss_dssp             CCST
T ss_pred             CChh
Confidence            7554

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=93.45  E-value=0.076  Score=41.80  Aligned_cols=70  Identities=9%  Similarity=-0.053  Sum_probs=37.5

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHH----HHHHHHHHHHH
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTV----GNIATMKSQLQ   80 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~----~~~~~~~~~l~   80 (133)
                      -|||.|||||....+..  +.++++ .|     +++.+..|-.+ +.    .....|.+++++..    .+...+.+++.
T Consensus        41 ~PTg~lHlG~yl~~l~~--~~~lQ~-~G-----~~~~~~iaD~h-a~----~~~~~g~~~e~i~~~~~~~~~~~~~~~~l  107 (375)
T 2cyc_A           41 EISGYIHLGTGLMAGAK--IADFQK-AG-----IKTRVFLADWH-SW----INDKLGGDLEVIQEVALKYFKVGMEKSIE  107 (375)
T ss_dssp             CCCSCCBHHHHHHHHHH--HHHHHH-TT-----CBCEEEECHHH-HH----HTTGGGGCHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCCcCchHHHHHHHH--HHHHHH-CC-----CcEEEEecCcE-EE----cCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999995443332  455554 58     87765554221 11    01122344543322    22333337788


Q ss_pred             hcCcccc
Q psy6621          81 GFGCKFN   87 (133)
Q Consensus        81 ~lgi~~d   87 (133)
                      ++|+..+
T Consensus       108 a~G~dp~  114 (375)
T 2cyc_A          108 VMGGDPK  114 (375)
T ss_dssp             HTTCCGG
T ss_pred             HhCCCcc
Confidence            8888654

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=93.34  E-value=0.3  Score=38.65  Aligned_cols=67  Identities=10%  Similarity=-0.072  Sum_probs=40.6

Q ss_pred             CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHhc
Q psy6621           5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      .|| |.|||||..+.+   .+.++++..|     ..|.+.     .|++-  +.... ..+++++ .++...+.+++.++
T Consensus        82 ~PTa~~lHlGh~v~~~---~~~~lQ~~~~-----~~v~i~-----I~D~~--~~~~r~~~~~e~i-~~~~~~~~~~~lA~  145 (393)
T 3hv0_A           82 GPSSESLHVGHLVPFL---FTKYLQDTFK-----VPLVIQ-----LTDDE--KFIFKSNLTLEET-HNYAYENMKDIIAC  145 (393)
T ss_dssp             CCSSSSCBSTTHHHHH---HHHHHHHHHC-----CCEEEE-----ECHHH--HHHHCTTCCHHHH-HHHHHHHHHHHHTT
T ss_pred             CCCCCCccHHHHHHHH---HHHHHHHhcC-----CCeEee-----ccChH--HHhhccCCCHHHH-HHHHHHHHHHHHHc
Confidence            488 689999977654   3444555557     666553     33331  22333 5565444 55556777888888


Q ss_pred             Ccccc
Q psy6621          83 GCKFN   87 (133)
Q Consensus        83 gi~~d   87 (133)
                      |+..+
T Consensus       146 GlDp~  150 (393)
T 3hv0_A          146 GFDPE  150 (393)
T ss_dssp             CCCTT
T ss_pred             CCCCc
Confidence            87544

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0

Probab=93.30  E-value=0.25  Score=39.20  Aligned_cols=67  Identities=7%  Similarity=-0.084  Sum_probs=40.7

Q ss_pred             CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      .||| .|||||..+.   ..+.++++..|     ..|.++     .|++.  ++.....+++++ .++...+.+++.++|
T Consensus        86 ~PTg~~lHLGh~v~~---~~~~~lQ~~~~-----~~v~i~-----I~D~~--~~l~~~~~~e~i-~~~~~~~~~~~lA~G  149 (395)
T 3i05_A           86 GPSSESMHMGHLIPF---MFTKWLQDSFR-----VPLVIQ-----MTDDE--KFYFRNIPMEQV-EAMTTENIKDIIAMG  149 (395)
T ss_dssp             CCCSSCCBGGGSHHH---HHHHHHHHHHT-----CCEEEE-----ECHHH--HHHHSCCCHHHH-HHHHHHHHHHHHTTT
T ss_pred             cCCCccchHHHHHHH---HHHHHHHHhcC-----CcEEEE-----EcchH--HHhcCCCCHHHH-HHHHHHHHHHHHHcC
Confidence            4899 7999998665   23344555557     666665     33322  222333565544 556667778888888


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       150 lDp~  153 (395)
T 3i05_A          150 FDPE  153 (395)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            7543

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=93.13  E-value=0.13  Score=40.05  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=37.8

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.|||||..+.+.  -+.+++  ..     +++.+..| |.|++-.      ...+++++ +++...+.+++.++|+
T Consensus        30 ~PTG~lHLGn~~g~l~--~~~~lQ--~~-----~~~~~~Ia-D~ha~~~------~~~~~e~i-~~~~~~~~~~~la~Gl   92 (351)
T 1yi8_B           30 RPTGALHLGHLAGSLQ--NRVRLQ--DE-----AELFVLLA-DVQALTD------HFDRPEQV-RENVLAVALDYLAAGL   92 (351)
T ss_dssp             CCSSCCBHHHHHHTHH--HHHHHT--SS-----SEEEEEEC-HHHHHHH------HTTCHHHH-HHHHHHHHHHHHHHTC
T ss_pred             CCCCCccHHHHHHHHH--HHHHHH--Hh-----CCeEEEEe-cchhhcC------CCCCHHHH-HHHHHHHHHHHHHhCC
Confidence            3899999999998642  122322  23     55544332 2232211      13555544 5555677788888988


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        93 dp~   95 (351)
T 1yi8_B           93 DPQ   95 (351)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            554

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=92.98  E-value=0.33  Score=41.16  Aligned_cols=71  Identities=8%  Similarity=-0.155  Sum_probs=46.7

Q ss_pred             CCCCCCCCcCcchHHHHHHHHHHHHHHHhh-cCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q psy6621           1 MYDCTEEELTCLGGVVVKTHSGAECRLAGI-NSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL   79 (133)
Q Consensus         1 ~y~~~png~lHlGH~~~~~~~Dil~R~~r~-~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l   79 (133)
                      ||.| ++|.+||||+....-  ++..|++. .|     .+|.+..|-++.     ..-.+.|.++ +-++++.....+++
T Consensus       386 ~~~p-s~g~lHLGh~v~~~k--~l~~~~~~~~g-----~~v~ilIaD~~A-----~i~d~~g~~~-e~i~~~~~y~~~~~  451 (690)
T 3p0j_A          386 MWMP-ALLKVPLDVAEGMIK--VTKDFIAAHPE-----GTVTLVLPDWSA-----VASDEITGVE-KDISAALQVNCALL  451 (690)
T ss_dssp             EECC-CCSSCBHHHHHHHHH--HHHHHHHHCSS-----CEEEEEECTTHH-----HHTTCTTCCH-HHHHHHHHHHHHHH
T ss_pred             EecC-CCCCcccchHHHHHH--HHHHHHHHcCC-----CeEEEEEecchh-----hhCCCCCCCH-HHHHHHHHHHHHHH
Confidence            4677 899999999988643  25566665 36     788777765542     0011234554 44455667788889


Q ss_pred             HhcCcc
Q psy6621          80 QGFGCK   85 (133)
Q Consensus        80 ~~lgi~   85 (133)
                      ..+|..
T Consensus       452 ~alG~d  457 (690)
T 3p0j_A          452 KAYGLP  457 (690)
T ss_dssp             HHHTCC
T ss_pred             HhcCCC
Confidence            999875

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=92.82  E-value=0.15  Score=39.74  Aligned_cols=64  Identities=8%  Similarity=-0.018  Sum_probs=39.5

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      .|||.+||||..+.+     .+|.+ ..+     +++.+..+ |.|..       -...+|++ ..++...+.+++.+.|
T Consensus        23 ~PTG~lHLGh~vg~l-----~~~~~lQ~~-----~~~~~~ia-D~hA~-------t~~~~~~~-~~~~~~~~~~~~lA~G   83 (346)
T 3n9i_A           23 QPSGELTIGNYMGAL-----RQWVQMQDD-----YDCIYCIV-DLHAI-------TARQDPAL-LRKRTLDTLALYLACG   83 (346)
T ss_dssp             CSCSCCBHHHHHHTH-----HHHHTTTTT-----SEEEEEEC-HHHHT-------TSCCCHHH-HHHHHHHHHHHHHHHT
T ss_pred             CCCCcccHHHHHHHH-----HHHHHHHhh-----CcEEEEEe-cceee-------cCCCCHHH-HHHHHHHHHHHHHHcC
Confidence            489999999998774     22323 236     77765543 33321       11345543 4555667778888889


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus        84 lDp~   87 (346)
T 3n9i_A           84 IDPK   87 (346)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            8765

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=92.30  E-value=0.18  Score=39.23  Aligned_cols=69  Identities=4%  Similarity=-0.067  Sum_probs=39.0

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.|||||....+  -.+.++++ .|     +++.+..|=. |+.    .....|.++++ ++++...+.+++.++|+
T Consensus        48 ~PTg~lHlGhyl~~l--~~~~~lQ~-~G-----~~~~~~i~D~-~a~----~~~~~~~~~e~-i~~~~~~~~~~~la~Gl  113 (348)
T 2j5b_A           48 EPSGRIHIAQALITV--MNTNNMIE-CG-----GQMIIYIADW-FAK----MNLKMNGDINK-IRELGRYFIEVFKACGI  113 (348)
T ss_dssp             CCCSSCBHHHHHHHH--HHHHHHHH-TT-----EEEEEEECHH-HHH----HTTGGGGCHHH-HHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCchhHHHHHH--HHHHHHHH-cC-----CcEEEEeccc-hhh----hCCCCCCCHHH-HHHHHHHHHHHHHHhcC
Confidence            488999999943332  23555554 48     8876555422 111    01112234443 45566677777778887


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus       114 dp~  116 (348)
T 2j5b_A          114 NLD  116 (348)
T ss_dssp             CGG
T ss_pred             Ccc
Confidence            654

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=92.21  E-value=0.12  Score=41.96  Aligned_cols=67  Identities=13%  Similarity=0.107  Sum_probs=38.5

Q ss_pred             CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|| |.|||||..+.+.   +.+++...|     ..|.+..|=.+ +  ...    ...++++ +.++...+.+++.++|
T Consensus       163 dPTag~LHLGh~v~~~~---~~~lQ~~~g-----~~~iilI~D~~-a--~ig----d~lt~e~-i~~n~~~~~~~~lA~G  226 (477)
T 1r6t_A          163 GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMTDDE-K--YLW----KDLTLDQ-AYGDAVENAKDIIACG  226 (477)
T ss_dssp             CCCTTCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEECHHH-H--HHH----SSCCHHH-HHHHHHHHHHHHHTTC
T ss_pred             cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEecce-e--eec----CCCCHHH-HHHHHHHHHHHHHHhC
Confidence            488 8999999998653   234444468     77655544322 0  000    1345444 4455555667777777


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       227 lDp~  230 (477)
T 1r6t_A          227 FDIN  230 (477)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            6543

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=92.11  E-value=0.53  Score=37.68  Aligned_cols=68  Identities=10%  Similarity=0.079  Sum_probs=39.8

Q ss_pred             CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|| |.|||||..+.+.   +.+++...|     ..+.+..| |.++.     ......++.. +.++...+.+++.++|
T Consensus       110 dPTag~LHLGh~v~~~~---l~~lQ~~~g-----~~~i~lI~-D~ta~-----l~~~~~t~e~-i~~~~~~~~~~~lA~G  174 (432)
T 2ip1_A          110 GPSSDSMHLGHMIPFVF---TKWLQEVFD-----VPLVIELT-DDEKF-----LFKHKLTIND-VKNFARENAKDIIAVG  174 (432)
T ss_dssp             CCCSSCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHH-----HHCTTCCHHH-HHHHHHHHHHHHHTTT
T ss_pred             cCCCCCccHHHHHHHHH---HHHHHHHcC-----CeEEEEEe-cccce-----eCCCCCCHHH-HHHHHHHHHHHHHHhC
Confidence            489 8999999987653   334555478     87766666 22111     0111245443 4555556677777777


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       175 lDp~  178 (432)
T 2ip1_A          175 FDPK  178 (432)
T ss_dssp             CCGG
T ss_pred             CCCC
Confidence            7543

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=92.08  E-value=0.21  Score=42.32  Aligned_cols=68  Identities=7%  Similarity=-0.038  Sum_probs=38.8

Q ss_pred             CCCCcCcchHHHHHHHHH-HHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEELTCLGGVVVKTHSG-AECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~D-il~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|||.|||||.   ++.- .+.+++ ..|     ++|.+..| |-|++-.    ...+.++++ ++++...+.+++.++|
T Consensus        48 ~PTg~lHLG~~---v~~~~~~~~lQ-~~G-----~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~~lA~G  112 (690)
T 3p0j_A           48 EPSGRMHIAQG---IFKAVNVNKCT-AAG-----CEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEVWKAAG  112 (690)
T ss_dssp             CCCSCCBHHHH---HHHHHHHHHHH-HTT-----EEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHHHHHTT
T ss_pred             cCCCcchhHhh---HHHHHHHHHHH-HCC-----CcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHHHHHcC
Confidence            48999999992   2222 244444 458     88876666 4444310    012333333 3445566677788888


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       113 lDp~  116 (690)
T 3p0j_A          113 MDMD  116 (690)
T ss_dssp             CCGG
T ss_pred             CChH
Confidence            7654

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A

Probab=91.59  E-value=0.12  Score=40.93  Aligned_cols=68  Identities=12%  Similarity=0.169  Sum_probs=33.6

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcC-CChHHHHHHHHHHHHHHHH
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHG-IDPREWTVGNIATMKSQLQ   80 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g-~~~~~~~~~~~~~~~~~l~   80 (133)
                      -|||+ |||||... +.  .+.++++ .|     +++.+..|=.+  .|+|.-. .+.+. .++++ +.++...+..++.
T Consensus        72 dPTg~sLHlGhlv~-l~--~l~~lQ~-~G-----~~~~~lIgD~haligdpsgk-~~~R~~~~~e~-i~~n~~~i~~~~~  140 (392)
T 1y42_X           72 DPTAPSLHVGHLLP-LM--PLFWMYL-EG-----YKAFTLIGGSTAKIGDPTGR-LKSRDHLSSSD-ATMNMTKIHYQLK  140 (392)
T ss_dssp             CCCSSSCBGGGHHH-HH--HHHHHHH-HT-----CEEEEEECTTTTTTCCCCC------------C-HHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHH-HH--HHHHHHH-cC-----CcEEEEEcCceeEeCCCCCc-chhhccCCHHH-HHHHHHHHHHHHH
Confidence            48998 99999873 22  3555554 58     88776654322  1233211 11122 23333 3455566666666


Q ss_pred             hcC
Q psy6621          81 GFG   83 (133)
Q Consensus        81 ~lg   83 (133)
                      +++
T Consensus       141 a~~  143 (392)
T 1y42_X          141 KLW  143 (392)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=91.42  E-value=0.13  Score=40.99  Aligned_cols=68  Identities=13%  Similarity=0.124  Sum_probs=38.2

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      -|||+ |||||... +  -.+.++++ .|     +++.+..|=.+  .|+|.-...++.-.++++ +.++...+.+++.+
T Consensus        40 dPTg~sLHlGh~v~-l--~~~~~lQ~-~G-----~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~-i~~n~~~~~~~~~~  109 (420)
T 1jil_A           40 DPTADSLHIGHLLP-F--LTLRRFQE-HG-----HRPIVLIGGGTGMIGDPSGKSEERVLQTEEQ-VDKNIEGISKQMHN  109 (420)
T ss_dssp             CCSSSSCBHHHHHH-H--HHHHHHHH-TT-----CEEEEEECTTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHHHHHHH
T ss_pred             CCCCCCccHHHHHH-H--HHHHHHHH-CC-----CcEEEEEcCceeEecCCCccccccccCCHHH-HHHHHHHHHHHHHH
Confidence            48998 99999773 2  23555554 58     88876665433  233311101111124444 45666777777777


Q ss_pred             c
Q psy6621          82 F   82 (133)
Q Consensus        82 l   82 (133)
                      +
T Consensus       110 ~  110 (420)
T 1jil_A          110 I  110 (420)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}

Probab=88.80  E-value=1  Score=35.76  Aligned_cols=67  Identities=6%  Similarity=-0.044  Sum_probs=38.9

Q ss_pred             CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      .||| .|||||..+..   .+.++++..|     ..|.+..| |.|      +......+++++ +++...+.+++.++|
T Consensus       109 ~PTg~~lHLGh~v~~~---~~~~lQ~~~g-----~~~~i~Ia-D~~------a~l~~~~~~e~i-~~~~~~~~~~~lA~G  172 (406)
T 3tze_A          109 GPSSKTMHIGHTIPFL---LCKYMQDAFK-----IRLVIQIT-DDE------KFLWKSMRLEDA-MAYGRENIKDIVTLG  172 (406)
T ss_dssp             CCCSSCCBGGGHHHHH---HHHHHHHHHT-----CCEEEEEC-HHH------HHHHSSCCHHHH-HHHHHHHHHHHHTTT
T ss_pred             CCCCCcccHHHHHHHH---HHHHHHHhcC-----CcEEEEee-ChH------HHcCCCCCHHHH-HHHHHHHHHHHHHcC
Confidence            4898 79999977652   2333444447     66655322 222      111123555444 555667778888888


Q ss_pred             cccc
Q psy6621          84 CKFN   87 (133)
Q Consensus        84 i~~d   87 (133)
                      +..+
T Consensus       173 lDp~  176 (406)
T 3tze_A          173 FDPK  176 (406)
T ss_dssp             CCGG
T ss_pred             CCcc
Confidence            8654

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*

Probab=87.97  E-value=0.44  Score=36.59  Aligned_cols=32  Identities=16%  Similarity=0.044  Sum_probs=21.8

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG   45 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G   45 (133)
                      -|||. |||||... +  -.+.+++ ..|     +++.+..|
T Consensus        41 ~PTg~slHlGh~l~-l--~~~~~lQ-~~g-----~~~~~~i~   73 (322)
T 2yxn_A           41 DPTADSLHLGHLVP-L--LCLKRFQ-QAG-----HKPVALVG   73 (322)
T ss_dssp             CCSSSSCBHHHHHH-H--HHHHHHH-HTT-----CEEEEEEC
T ss_pred             cCCCCcccHHHHHH-H--HHHHHHH-HcC-----CcEEEEEc
Confidence            48998 99999773 2  2345554 458     88876665

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*

Probab=86.90  E-value=1.3  Score=35.50  Aligned_cols=33  Identities=18%  Similarity=0.074  Sum_probs=22.1

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW   46 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~   46 (133)
                      -|||+ |||||...   --.+.+++. .|     +++.+..|=
T Consensus        45 dPTg~sLHlGh~v~---l~~l~~lQ~-~G-----~~~i~lIgD   78 (432)
T 1h3f_A           45 DPTRPDLHLGHAVV---LRKMRQFQE-LG-----HKVVLIIGD   78 (432)
T ss_dssp             CTTCCSCBHHHHHH---HHHHHHHHH-TT-----CEEEEEECC
T ss_pred             cCCCCCCchhhHHH---HHHHHHHHH-CC-----CCEEEEEcc
Confidence            38985 99999873   233555554 58     887766553

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A

Probab=86.69  E-value=0.47  Score=38.12  Aligned_cols=66  Identities=12%  Similarity=0.100  Sum_probs=36.6

Q ss_pred             CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621           5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG   83 (133)
Q Consensus         5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg   83 (133)
                      -|| |.|||||..+.+.   +.+++...|     ..+.+..|=.+ +.  ..    ...++++ +.++...+.+++.++|
T Consensus       116 dPTag~LHLGh~v~~~~---~~~lQ~~~G-----~~~iilIgD~t-a~--ig----d~lt~e~-i~~n~~~~~~~~lA~G  179 (437)
T 1r6u_A          116 GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMTDDE-KY--LW----KDLTLDQ-AYGDAVENAKDIIACG  179 (437)
T ss_dssp             CCCSSCCBHHHHHHHHH---HHHHHHHHT-----CCEEEEECHHH-HH--HH----SSCCHHH-HHHHHHHHHHHHHTTT
T ss_pred             cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEecce-ee--ec----CCCCHHH-HHHHHHHHHHHHHHhC
Confidence            388 8999999997653   334444468     77655544321 00  00    1344444 3444445566666677


Q ss_pred             ccc
Q psy6621          84 CKF   86 (133)
Q Consensus        84 i~~   86 (133)
                      +..
T Consensus       180 lDp  182 (437)
T 1r6u_A          180 FDI  182 (437)
T ss_dssp             CCG
T ss_pred             CCc
Confidence            654

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A

Probab=86.55  E-value=0.52  Score=37.59  Aligned_cols=68  Identities=16%  Similarity=0.117  Sum_probs=35.7

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      -|||+ |||||... +  -.+.++++ .|     +++.+..|=.+  .|+|.-...++.-.++++ +.++...+++++..
T Consensus        38 dPTg~sLHlGh~v~-l--~~l~~lQ~-~G-----~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~-i~~n~~~~~~q~~~  107 (419)
T 2ts1_A           38 DPTADSLHIGHLAT-I--LTMRRFQQ-AG-----HRPIALVGGATGLIGDPSGKKSERTLNAKET-VEAWSARIKEQLGR  107 (419)
T ss_dssp             CCSSSSCBGGGHHH-H--HHHHHHHH-TT-----CEEEEEECTTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHHHHHTT
T ss_pred             CCCCCCccHHHHHH-H--HHHHHHHH-CC-----CcEEEEEcCceeEecCCCCccccccCCCHHH-HHHHHHHHHHHHHH
Confidence            38998 99999773 2  23555554 68     88876665433  123311000111123333 34556666666555


Q ss_pred             c
Q psy6621          82 F   82 (133)
Q Consensus        82 l   82 (133)
                      +
T Consensus       108 ~  108 (419)
T 2ts1_A          108 F  108 (419)
T ss_dssp             S
T ss_pred             H
Confidence            3

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*

Probab=85.92  E-value=0.61  Score=36.34  Aligned_cols=33  Identities=12%  Similarity=0.048  Sum_probs=21.8

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW   46 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~   46 (133)
                      -|||+ |||||+. .+..  +.++++ .|     +++.+..|=
T Consensus        54 ~PTg~sLHLGhl~-~l~~--~~~lQ~-~G-----~~~~~lIaD   87 (356)
T 2pid_A           54 DPTADSLHVGHLL-ALLG--LFHLQR-AG-----HNVIALVGG   87 (356)
T ss_dssp             CCSSSSCBHHHHH-HHHH--HHHHHH-TT-----CEEEEEECT
T ss_pred             cCCCCcccHHHHH-HHHH--HHHHHH-CC-----CcEEEEEcc
Confidence            48996 9999944 3333  555554 58     888766553

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}

Probab=85.28  E-value=0.66  Score=37.18  Aligned_cols=32  Identities=16%  Similarity=0.056  Sum_probs=21.4

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG   45 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G   45 (133)
                      -|||+ |||||+. .+.  .+.++++ .|     +++.+..|
T Consensus        40 dPTg~sLHLGhlv-~l~--~l~~lQ~-~G-----~~~i~lIg   72 (432)
T 2jan_A           40 DPTAPSLHAGHLV-PLL--TLRRFQR-AG-----HRPIVLAG   72 (432)
T ss_dssp             CCSSSSCBGGGHH-HHH--HHHHHHH-TT-----CEEEEEEC
T ss_pred             CCCCCCcCHHHHH-HHH--HHHHHHH-CC-----CcEEEEEc
Confidence            48995 9999944 333  3556554 58     88876654

>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}

Probab=83.46  E-value=0.7  Score=28.02  Aligned_cols=51  Identities=20%  Similarity=0.181  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeeecccCCCC------CHHHHHHHHHcCCChHHHHHHHHHHH
Q psy6621          18 KTHSGAECRLAGINSIIKGPVRVFQPMGWDAF------GLPAENAAHQHGIDPREWTVGNIATM   75 (133)
Q Consensus        18 ~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~------G~~i~~~a~~~g~~~~~~~~~~~~~~   75 (133)
                      .+++|++.+|-+.       -+|+.-.|+||.      +.+++.+++..|+++.++.++..+.+
T Consensus         7 ~tI~eIv~~~P~~-------~~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i   63 (76)
T 2k53_A            7 MIIADVLQMDRGT-------APIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYF   63 (76)
T ss_dssp             SBHHHHHHHCGGG-------HHHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCHHH-------HHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3567777765433       335556666662      35678899999999988766555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1h3na3	494	c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas	3e-18
d1pfva2	350	c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe	5e-15
d1rqga2	361	c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe	4e-11
d1ilea3	452	c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe	7e-10
d2d5ba2	348	c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR	2e-09
d1ivsa4	425	c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase	2e-09
d1ffya3	450	c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe	2e-06

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 77.3 bits (189), Expect = 3e-18
 Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
            V  PMGWDAFGLPAENAA + G+ P++WT  NI   K  L+  G  ++W+ E+ TC+P+
Sbjct: 72  EVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPE 131

Query: 99  YYKWTQALFLDLYHAGLVYR--KEVDYSQNLPTKFYH 133
           YY+W Q +FL ++  GL YR    V++     T   +
Sbjct: 132 YYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLAN 168

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

 Score = 68.0 bits (165), Expect = 5e-15
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
            V      DA G P    A Q GI P +         ++   GF    ++++  +T   +
Sbjct: 41  EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNI--SYDNYHSTHSEE 98

Query: 99  YYKWTQALFLDLYHAGLVYRKEVD 122
             + ++ ++  L   G +  + + 
Sbjct: 99  NRQLSELIYSRLKENGFIKNRTIS 122

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 56.6 bits (135), Expect = 4e-11
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
            V    G D  G P    A + G  PRE        +K   Q     F++     T  P 
Sbjct: 42  DVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGR--TELPI 99

Query: 99  YYKWTQALFLDLYHAGLVYRKEVD 122
           +YK +Q  FL  Y  G + +K   
Sbjct: 100 HYKLSQEFFLKAYENGHLVKKVTK 123

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 53.4 bits (127), Expect = 7e-10
 Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 17/112 (15%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDP-----------------REWTVGNIATMKSQLQG 81
              +  GWD  GLP E    +                      RE         ++  + 
Sbjct: 77  YAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTER 136

Query: 82  FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFYH 133
                + E   AT +P Y +       +L+  GL+YR               
Sbjct: 137 IAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPL 188

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
           R F   G D  G     AA   G DP+ +        K      G  ++    + T + +
Sbjct: 42  RTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDD--FIRTTEER 99

Query: 99  YYKWTQALFLDLYHAGLVYRK 119
           + K  Q +   +Y AG +Y  
Sbjct: 100 HKKVVQLVLKKVYEAGDIYYG 120

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 39  RVFQPMGWDAFGLP----AENAAHQHGIDP------------REWTVGNIATMKSQLQGF 82
                 G D  G+      E    + G                +W   +  T+  QL+  
Sbjct: 73  EAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRL 132

Query: 83  GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119
           G   +W  E  T D K  +  +  F   YH GL YR 
Sbjct: 133 GASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 39  RVFQPMGWDAFGLPAENAAHQHGIDPREWTV------------GNIATMKSQLQGFGCKF 86
                 GWD  GLP E A  + G+D ++ +               I   K   +  G + 
Sbjct: 87  YAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRG 146

Query: 87  NWESELATCDPKYYKWTQALFLDLYHAGLVYR--KEVDYSQNLPTKFYH 133
           ++     T  P+Y      +F ++   GL+Y+  K V +S +  +    
Sbjct: 147 DFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAE 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1h3na3	494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	100.0
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	100.0
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	100.0
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	99.98
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	99.98
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	99.96
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	99.96
d1li5a2	315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	99.9
d1f7ua2	348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	99.64
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	99.51
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	99.49
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	99.41
d1gtra2	331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	99.32
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	99.31
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	95.61
d2ts1a_	319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	94.08
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	93.29
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	93.18
d1h3fa1	343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	93.06
d1jila_	323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	93.01
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	92.96

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.9e-39  Score=256.94  Aligned_cols=123  Identities=35%  Similarity=0.689  Sum_probs=121.2

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      ||||||.||||||++++++|+++||+||+|     ++|.+++||||||+|||.+|++.+..|+++++++.+.+++++++|
T Consensus        41 pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G-----~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~  115 (494)
T d1h3na3          41 FPYPSGDLHMGHLKNYTMGDVLARFRRMQG-----YEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM  115 (494)
T ss_dssp             CCCSSSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCchhhhHHHHHHHHHHHHHHHHccC-----CcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHHHhc
Confidence            789999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |++.||++++.|++++|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus       116 g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~~  163 (494)
T d1h3na3         116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ  163 (494)
T ss_dssp             TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             CcccCCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCcc
Confidence            999999999999999999999999999999999999999999999886

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=9.6e-37  Score=244.57  Aligned_cols=124  Identities=19%  Similarity=0.317  Sum_probs=118.2

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCCh------------HHHHHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDP------------REWTVG   70 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~------------~~~~~~   70 (133)
                      ||||||.||||||++++++|+++||+||+|     ++|++++||||||+|||.+|++.+..+            ++++.+
T Consensus        56 pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G-----~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (450)
T d1ffya3          56 PPYANGNLHMGHALNKILKDFIVRYKTMQG-----FYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE  130 (450)
T ss_dssp             CCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----CBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCchhhhHHHHHHHHHHHHHHHHhcC-----CccccccccccCCcHHHHHHHhhCCccccccHHHHhhhcchhhhh
Confidence            799999999999999999999999999999     999999999999999999999887654            566889


Q ss_pred             HHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621          71 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF  131 (133)
Q Consensus        71 ~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~  131 (133)
                      +++.+++++++||++.||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.++.
T Consensus       131 ~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~  191 (450)
T d1ffya3         131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSES  191 (450)
T ss_dssp             HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred             hhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCeeccccccccccccCc
Confidence            9999999999999999999999999999999999999999999999999999999999864

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3e-33  Score=220.75  Aligned_cols=124  Identities=19%  Similarity=0.226  Sum_probs=114.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----CCCh------------HH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH----GIDP------------RE   66 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~----g~~~------------~~   66 (133)
                      +|||||+|||||+++++++||++||+|++|     ++|.+++|+|+||+||+.+|++.    |..+            ..
T Consensus        42 pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G-----~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~~~~~~~~~  116 (425)
T d1ivsa4          42 PPNVTGSLHMGHALDNSLQDALIRYKRMRG-----FEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ  116 (425)
T ss_dssp             CCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----SEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTTHHHHHHHH
T ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHhCC-----CceeecCcccCCcchHHHHHHHhhcccCCChHHhcHHHHHHHHHH
Confidence            689999999999999999999999999999     99999999999999999998874    4332            35


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621          67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF  131 (133)
Q Consensus        67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~  131 (133)
                      ++.++.+.+.+++++||++.|+..+++|+++.|.+.++++|.+|.++|++|++.++++|||.++.
T Consensus       117 ~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~~  181 (425)
T d1ivsa4         117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET  181 (425)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTE
T ss_pred             HHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhccCcccccceeecccccccc
Confidence            67788899999999999999999999999999999999999999999999999999999998864

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=2.7e-33  Score=222.31  Aligned_cols=123  Identities=19%  Similarity=0.181  Sum_probs=114.8

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCC-----------------hH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGID-----------------PR   65 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~-----------------~~   65 (133)
                      ||||||+|||||+++++++||++||+|++|     ++|.+++|+|+||+||+.+|++++..                 ++
T Consensus        46 pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G-----~~V~~v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  120 (452)
T d1ilea3          46 PPTANGLPHVGHAQARSYKDLFPRYKTMRG-----YYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACR  120 (452)
T ss_dssp             CCCTTSCCCTTHHHHHHHHHHHHHHHHHTT-----CBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHH
T ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHHHcCC-----CceeccCCcCCCCHHHHHHHHHhhccccccchhHHHHHHHHHHHh
Confidence            789999999999999999999999999999     99999999999999999999887543                 25


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +++.++.+.+.++++++|++.||..++.|+++.|.+.++++|.+|+++|++|++...++||+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~~  185 (452)
T d1ilea3         121 ESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG  185 (452)
T ss_dssp             HHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTT
T ss_pred             hHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhcCCcccccccchhhcccc
Confidence            56777788899999999999999999999999999999999999999999999999999999875

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=1.7e-32  Score=211.64  Aligned_cols=121  Identities=15%  Similarity=0.165  Sum_probs=116.0

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||+|||||+|+++++|+++||+|++|     ++|.+++|+||||+||+.+|+++|+++.++++++...+.++++.|
T Consensus        10 ~P~~nG~lHiGHar~~v~~D~l~R~lr~~G-----~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~~~l   84 (350)
T d1pfva2          10 LPYANGSIHLGHMLEHIQADVWVRYQRMRG-----HEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF   84 (350)
T ss_dssp             CCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCccccccHHHHHHHHHHHHHHhcC-----CceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHc
Confidence            689999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      +|.  +...+.|.+|.+.+.+++++.+|.++|++|++...++||+.+.
T Consensus        85 ~i~--~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~  130 (350)
T d1pfva2          85 NIS--YDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKG  130 (350)
T ss_dssp             TCC--CSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             CCC--cccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCC
Confidence            984  4577889999999999999999999999999999999999765

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.96  E-value=1.6e-29  Score=194.44  Aligned_cols=123  Identities=21%  Similarity=0.158  Sum_probs=115.8

Q ss_pred             CCCCCCcCcchHHHH-HHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           3 DCTEEELTCLGGVVV-KTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         3 ~~~png~lHlGH~~~-~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      +|||||+|||||+++ ++.+|+++||+|++|     ++|.+++|+|++|+||+.+|+++|++|+++++.+...+.+++..
T Consensus        10 ~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G-----~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~~~~   84 (361)
T d1rqga2          10 LPYANGPIHAGHLAGAYLPADIFVRYLRLKG-----EDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR   84 (361)
T ss_dssp             CCBTTSCCBHHHHHHHTHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccccccccHHHHHHHHHHHHhcC-----CceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhcccccc
Confidence            589999999999886 788999999999999     99999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY  132 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~  132 (133)
                      +++..+  ....|.++.+...++.++..+.++|++|++...++||+.+..+
T Consensus        85 ~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (361)
T d1rqga2          85 AKISFD--FFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMF  133 (361)
T ss_dssp             HTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBC
T ss_pred             cccccc--cccccccchhhhhhhhhhhhccccCceeeeeeeeeccccccee
Confidence            998654  6678999999999999999999999999999999999988654

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.3e-29  Score=194.13  Aligned_cols=121  Identities=19%  Similarity=0.210  Sum_probs=114.5

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      +|||||+|||||+|+++++|+++|++|++|     ++|.+++|+|++|+||+.+|.++|++|++++..+...+++.++.+
T Consensus        11 ~PypnG~lHiGH~r~~v~~D~l~R~lr~~G-----~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~   85 (348)
T d2d5ba2          11 IYYVNAEPHLGHAYTTVVADFLARWHRLDG-----YRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL   85 (348)
T ss_dssp             CEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHhcC-----CCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHHHHhc
Confidence            578999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621          83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK  130 (133)
Q Consensus        83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  130 (133)
                      |+..|  ...++..+.+...++.++.++.++|++|++...++||+.+.
T Consensus        86 ~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  131 (348)
T d2d5ba2          86 GIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCE  131 (348)
T ss_dssp             TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             Ccccc--ceeecccchhhHHHHHHHHHHHhhCcccccccccccccccc
Confidence            99776  45678888899999999999999999999999999998754

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.4e-24  Score=162.88  Aligned_cols=118  Identities=13%  Similarity=0.005  Sum_probs=102.2

Q ss_pred             CCCCCC--CCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621           1 MYDCTE--EELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ   78 (133)
Q Consensus         1 ~y~~~p--ng~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   78 (133)
                      ||+|+|  ||++||||+|+++++|+++|++|+.|     ++|.+++|+|+||.+|...|++.|++|.++++++...+.++
T Consensus        25 ~yv~Gptv~g~~HIGH~R~av~gD~laR~lr~~G-----~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~~~~~~~~~   99 (315)
T d1li5a2          25 MYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLG-----YKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD   99 (315)
T ss_dssp             EEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             EEecCCcCCCCcccchhHHHHHHHHHHHHHHHcC-----CcEEEEecccchhHHHHHHHhhhhhccccccccchhhhhhh
Confidence            477766  58999999999999999999999999     99999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEecee-eeec
Q psy6621          79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVD-YSQN  126 (133)
Q Consensus        79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~-v~~~  126 (133)
                      +..+++..+..  +.+. .++...++..+.+|.++|.+|..... ++.+
T Consensus       100 ~~~~~i~~~~~--~~~~-~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~  145 (315)
T d1li5a2         100 FDALNILRPDM--EPRA-THHIAEIIELTEQLIAKGHAYVADNGDVMFD  145 (315)
T ss_dssp             HHHTTCCCCSB--CCBG-GGCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred             HHhcCCCCCcE--EEec-chhhhhhhhHHHHhhccCceeccccceEEee
Confidence            99999977532  2233 34667788889999999999877654 4444

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=6.7e-16  Score=119.25  Aligned_cols=116  Identities=11%  Similarity=-0.042  Sum_probs=91.2

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH---c-------------------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ---H-------------------   60 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~---~-------------------   60 (133)
                      -|||||++||||+|+.+++|+|+|.++..|     ++|.....++|.|.+|...+..   .                   
T Consensus        16 SaNpt~plHvGH~R~aiiGd~larlL~~~G-----~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l~~~~~   90 (348)
T d1f7ua2          16 SPNIAKPFHAGHLRSTIIGGFLANLYEKLG-----WEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYV   90 (348)
T ss_dssp             CCBTTSCCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHH
T ss_pred             CCCCCCCcchhhhhhHHHHHHHHHHHHHCC-----CeEEEEEEECCchHHHHHHHHHHHHhccccccccccchhHHHHHH
Confidence            389999999999999999999999999999     9999999999999987533310   0                   


Q ss_pred             --------CC-----------------------C------hHHHHHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHH
Q psy6621          61 --------GI-----------------------D------PREWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKW  102 (133)
Q Consensus        61 --------g~-----------------------~------~~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~  102 (133)
                              +.                       +      .+.+++...+.+.+++.+||+.+| |..+.    .-+...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es----~~~~~~  166 (348)
T d1f7ua2          91 RINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGES----QVSKES  166 (348)
T ss_dssp             HHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGG----GCCHHH
T ss_pred             HHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc----cccccc
Confidence                    00                       0      023466777889999999999998 33221    123344


Q ss_pred             HHHHHHHHHHCCCeEEeceeeeecC
Q psy6621         103 TQALFLDLYHAGLVYRKEVDYSQNL  127 (133)
Q Consensus       103 v~~~f~~L~~~G~iy~~~~~v~~~~  127 (133)
                      ...+...|.++|++|..++.++++.
T Consensus       167 ~~~v~~~L~~~~~~~~~~ga~~~~~  191 (348)
T d1f7ua2         167 MLKAIDLFKEKGLTHEDKGAVLIDL  191 (348)
T ss_dssp             HHHHHHHHHHTTCEEEETTEEEEEG
T ss_pred             hHHHHHHHHhhccccccCCcccccc
Confidence            5578899999999999999999875

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=1.7e-15  Score=111.63  Aligned_cols=49  Identities=10%  Similarity=-0.023  Sum_probs=45.7

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHH
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENA   56 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~   56 (133)
                      .|||||+|||||+|+++++|+++|++|+.|     ++|.++.++|++|.+++..
T Consensus        25 ~~~PnG~lHIGHlr~~i~gD~laR~lr~~G-----~~V~~~~~~dd~g~~~~~~   73 (317)
T d1irxa2          25 GITPSGYVHVGNFRELFTAYIVGHALRDKG-----YEVRHIHMWDDYDRFRKVP   73 (317)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHHHHHHHTTT-----CEEEEEEEECTTSBCCCCC
T ss_pred             CCCCCCCccccccHHHHHHHHHHHHHHHcC-----CCEEEEEEeccCcchhhhH
Confidence            479999999999999999999999999999     9999999999999877543

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=8.7e-14  Score=108.00  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=82.9

Q ss_pred             CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHH---HHcCC------C----------
Q psy6621           3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAA---HQHGI------D----------   63 (133)
Q Consensus         3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a---~~~g~------~----------   63 (133)
                      -|||+|++||||+|+.+++|+|+|.++..|     ++|....-+.|.|.++-..+   ++.+.      .          
T Consensus        15 SpN~~kplHvGHlRs~iiGd~laril~~~G-----~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~~~~~y~   89 (370)
T d1iq0a2          15 SVNPNKELHVGHLRNIALGDAIARILAYAG-----REVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYV   89 (370)
T ss_dssp             CCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred             CCCCCCCcchhhhhhHHHHHHHHHHHHHcC-----CEEEEEEeECCchHHHHHHHHHHHHhccccccccchhhhhhhhhh
Confidence            489999999999999999999999999999     99999999999999874332   11111      0          


Q ss_pred             --------------------------hHHHHHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHHHHHHHHHCCCe
Q psy6621          64 --------------------------PREWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQALFLDLYHAGLV  116 (133)
Q Consensus        64 --------------------------~~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~~f~~L~~~G~i  116 (133)
                                                .++........+++++.+||+.+| |..+.   +-...+.+..++..|.++|.+
T Consensus        90 ~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es---~l~~~~~~~~~i~~l~~~~~~  166 (370)
T d1iq0a2          90 RLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWES---DIVRAGLLQKALALLEQSPHV  166 (370)
T ss_dssp             HHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHH---HHHHTTHHHHHHHHHTTSTTE
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeeceeeeec---ccccccchhhhHhhhhhccce
Confidence                                      023345556677889999999998 32211   111234678889999999999


Q ss_pred             EEec
Q psy6621         117 YRKE  120 (133)
Q Consensus       117 y~~~  120 (133)
                      |+..
T Consensus       167 ~~~~  170 (370)
T d1iq0a2         167 FRPR  170 (370)
T ss_dssp             ECCS
T ss_pred             eecc
Confidence            9875

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=1.6e-13  Score=104.11  Aligned_cols=95  Identities=12%  Similarity=0.081  Sum_probs=72.6

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++...+||  ...|     .-++.   +||.+             +.....++.+.|.++|++
T Consensus         6 faPsPtG~lHiG~~rtal~n~~~Ak--~~~G-----~~iLR---idDtD-------------~~R~~~~~~~~I~~dL~w   62 (305)
T d1j09a2           6 IAPSPTGDPHVGTAYIALFNYAWAR--RNGG-----RFIVR---IEDTD-------------RARYVPGAEERILAALKW   62 (305)
T ss_dssp             ECCCCSSSCBHHHHHHHHHHHHHHH--HTTC-----EEEEC---BCCCC-------------TTSCCTTHHHHHHHHHHH
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEE---eCcCC-------------CccCchHHHHHHHHHHHH
Confidence            7899999999999999999999999  6667     44433   45543             333445789999999999


Q ss_pred             cCcccccCC-----ceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621          82 FGCKFNWES-----ELATCDPKYYKWTQALFLDLYHAGLVYRK  119 (133)
Q Consensus        82 lgi~~d~~~-----~~~T~~~~~~~~v~~~f~~L~~~G~iy~~  119 (133)
                      ||+..|-..     .......++.+..++.+.+|+++|++|.-
T Consensus        63 Lgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~C  105 (305)
T d1j09a2          63 LGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRA  105 (305)
T ss_dssp             TTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HhcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeeec
Confidence            999765211     11223456788999999999999999964

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutaminyl-tRNA synthetase (GlnRS)
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.1e-12  Score=100.62  Aligned_cols=91  Identities=11%  Similarity=0.218  Sum_probs=72.7

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++.=.+||  +..|     .-++.                =+++++.....++.+.|.++|++
T Consensus        24 FAPSPTG~LHiG~~rtal~n~l~Ak--~~~G-----~fiLR----------------IEDtD~~R~~~~~~~~I~~dL~W   80 (331)
T d1gtra2          24 FPPEPNGYLHIGHAKSICLNFGIAQ--DYKG-----QCNLR----------------FDDTNPVKEDIEYVESIKNDVEW   80 (331)
T ss_dssp             ECCCSSSCCBHHHHHHHHHHHHHHH--HTTC-----EEEEE----------------ECCCCGGGCCHHHHHHHHHHHHH
T ss_pred             eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------eCcCCCCcccchHHHHHHHHHHH
Confidence            7899999999999999999999998  6677     33322                13567777778999999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  .+..- ..++.+.-++.+.+|.++|++|.
T Consensus        81 LGl~wD--~~~~~-QS~r~~~Y~~~~~~L~~~G~aY~  114 (331)
T d1gtra2          81 LGFHWS--GNVRY-SSDYFDQLHAYAIELINKGLAYV  114 (331)
T ss_dssp             TTCCCS--SSCEE-GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             Hhcccc--cccee-cchHHHHHHHHHHhhhhcCCccc
Confidence            999655  33222 33467889999999999999995

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=8.7e-13  Score=99.19  Aligned_cols=91  Identities=16%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      |+|.|||.|||||++++++.=.+||  +..|     .-++   =+|             ++++.....++.+.|.++|++
T Consensus         7 FAPsPtG~lHiG~~rtal~n~~~Ak--~~~G-----~~iL---Rie-------------DtD~~R~~~~~~~~I~~dL~w   63 (286)
T d1nzja_           7 FAPSPSGELHFGSLIAALGSYLQAR--ARQG-----RWLV---RIE-------------DIDPPREVPGAAETILRQLEH   63 (286)
T ss_dssp             ECCCTTSCCCHHHHHHHHHHHHHHH--HTTC-----EEEE---EEC-------------CSCGGGSCTTHHHHHHHHHHH
T ss_pred             eCcCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEE---EeC-------------CCCCCcCCHHHHHHHHHHHHH
Confidence            7899999999999999999988888  6677     4332   223             345555556789999999999


Q ss_pred             cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621          82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  118 (133)
Q Consensus        82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  118 (133)
                      ||+..|  ... ..+.++.+..++++.+|.++|.+|.
T Consensus        64 lgl~~d--~~~-~~QS~r~~~Y~~~~~~L~~~g~aY~   97 (286)
T d1nzja_          64 YGLHWD--GDV-LWQSQRHDAYREALAWLHEQGLSYY   97 (286)
T ss_dssp             TTCCCS--SCC-EEGGGCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhhccc--ccc-chhHHHHHHHHHHHHHHHHcCCccc
Confidence            999655  322 2233467788999999999999995

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.61  E-value=0.039  Score=40.15  Aligned_cols=66  Identities=11%  Similarity=-0.070  Sum_probs=40.0

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      -|||.+||||...   ...+.++++. |     ++|.+.-|=. |       |.-..-+..+..+.........+.++|+
T Consensus        36 ~PTG~lHlGh~v~---~~~~~~lq~~-g-----~~~~~~IaD~-~-------a~~~~~~~~~~~~~~~~~~~~~~~a~G~   98 (306)
T d1j1ua_          36 EPSGKIHLGHYLQ---IKKMIDLQNA-G-----FDIIILLADL-H-------AYLNQKGELDEIRKIGDYNKKVFEAMGL   98 (306)
T ss_dssp             CCCSSCBHHHHHH---HHHHHHHHHT-T-----EEEEEEECHH-H-------HHHTTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcchHHHHHH---HHHHHHHHHC-C-----CcEEEEeccH-H-------HHhhhccchhhhhhhhhHHHHHHHhhhc
Confidence            4899999999873   2346666655 8     8887665521 1       1111112334445556666777888888


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ...
T Consensus        99 ~~~  101 (306)
T d1j1ua_          99 KAK  101 (306)
T ss_dssp             CCE
T ss_pred             ccc
Confidence            554

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=94.08  E-value=0.013  Score=43.49  Aligned_cols=68  Identities=18%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      .||++ |||||+.....    .|++...|     +.|..+.|-.+  .|+|.-. .+++.....+-.+++.+.+.+++.+
T Consensus        38 DPTa~sLHlGhlv~l~~----l~~~q~~G-----h~~i~LiG~~T~~IGDPsgk-~~eR~~l~~e~i~~n~~~~~~q~~~  107 (319)
T d2ts1a_          38 DPTADSLHIGHLATILT----MRRFQQAG-----HRPIALVGGATGLIGDPSGK-KSERTLNAKETVEAWSARIKEQLGR  107 (319)
T ss_dssp             CCSSSSCBGGGHHHHHH----HHHHHHTT-----CEEEEEECTTGGGTCCCTTC-SSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCcchHHHHHHHHH----HHHHHHcC-----CceeEEeeehhhccCCCccc-chhhhcCCHHHHHHHHHHHHHHHHH
Confidence            48885 99999998753    46667788     88887776554  4665522 1223334467777888888888877


Q ss_pred             c
Q psy6621          82 F   82 (133)
Q Consensus        82 l   82 (133)
                      +
T Consensus       108 ~  108 (319)
T d2ts1a_         108 F  108 (319)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.072  Score=40.14  Aligned_cols=66  Identities=9%  Similarity=0.028  Sum_probs=41.1

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF   82 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l   82 (133)
                      .|||. +||||..+...    .|++. ..|     ..|.+. ..|.|      +......++++. .++..+..+++-++
T Consensus        82 ~PSg~~lHlGh~v~~~~----~~~~q~~~~-----~~v~i~-iaD~~------a~~~~~~~~~e~-~~~~~e~~~~~lA~  144 (386)
T d1r6ta2          82 GPSSEAMHVGHLIPFIF----TKWLQDVFN-----VPLVIQ-MTDDE------KYLWKDLTLDQA-YGDAVENAKDIIAC  144 (386)
T ss_dssp             CCCTTCCBGGGHHHHHH----HHHHHHHHT-----CCEEEE-ECHHH------HHHHSSCCHHHH-HHHHHHHHHHHHTT
T ss_pred             CCCCchhHHHHHHHHHH----HHHHHHhcc-----cceEEE-ecchH------hhhcccCCHHHH-HHHHHHHHHHHHHh
Confidence            59996 89999987654    24444 456     676554 33433      112235566554 45556777777888


Q ss_pred             Ccccc
Q psy6621          83 GCKFN   87 (133)
Q Consensus        83 gi~~d   87 (133)
                      |+..+
T Consensus       145 GlDp~  149 (386)
T d1r6ta2         145 GFDIN  149 (386)
T ss_dssp             CCCTT
T ss_pred             CCCcc
Confidence            88765

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.18  E-value=0.11  Score=37.94  Aligned_cols=65  Identities=12%  Similarity=0.092  Sum_probs=40.1

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC   84 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi   84 (133)
                      .|||.+||||..+.+ ...+ .  -..|     +++.+... |.|.+       -...++.++ .++...+..++.++|+
T Consensus         9 ~PSG~~HlG~~~g~i-~~~~-~--lq~~-----~~~~i~iA-D~hal-------t~~~~~~~l-~~~~~~~~~~~lA~G~   70 (326)
T d1i6la_           9 QPSGVITIGNYIGAL-RQFV-E--LQHE-----YNCYFCIV-DQHAI-------TVWQDPHEL-RQNIRRLAALYLAVGI   70 (326)
T ss_dssp             CCCSCCBHHHHHHTH-HHHH-H--HTTT-----SEEEEEEC-HHHHT-------TSCCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred             CCCCccHHHHHHHHH-HHHH-H--HhCC-----CCEEEEee-hHHhh-------ccCCCHHHH-HHHHHHHHHHhhhhhc
Confidence            489999999987642 3222 1  2347     88754433 54421       122355444 4566777788999999


Q ss_pred             ccc
Q psy6621          85 KFN   87 (133)
Q Consensus        85 ~~d   87 (133)
                      ..+
T Consensus        71 dp~   73 (326)
T d1i6la_          71 DPT   73 (326)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            776

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

Probab=93.06  E-value=0.034  Score=41.15  Aligned_cols=33  Identities=21%  Similarity=0.066  Sum_probs=23.1

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW   46 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~   46 (133)
                      .|||+ |||||..+.. .   .|++...|     +++.+..|-
T Consensus        41 ~PTg~sLHlGh~v~~~-~---~~~lq~~g-----~~~~~~iad   74 (343)
T d1h3fa1          41 DPTRPDLHLGHAVVLR-K---MRQFQELG-----HKVVLIIGD   74 (343)
T ss_dssp             CTTCCSCBHHHHHHHH-H---HHHHHHTT-----CEEEEEECC
T ss_pred             cCCCCcccHHHHHHHH-H---HHHHHHCC-----CceEEEEec
Confidence            49995 9999998743 2   44555678     888766543

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.01  E-value=0.028  Score=41.61  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=44.6

Q ss_pred             CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC--CCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621           5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW--DAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~--D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~   81 (133)
                      -||++ |||||+.....    .|++...|     +.+..+.|-  ...|+|.-.. +++.....+.++++.+.+++++..
T Consensus        39 DPTa~sLHlGhlv~l~~----l~~~q~~G-----h~~i~LiG~~T~~iGDPsgk~-~~R~~l~~~~i~~n~~~~~~~~~~  108 (323)
T d1jila_          39 DPTADSLHIGHLLPFLT----LRRFQEHG-----HRPIVLIGGGTGMIGDPSGKS-EERVLQTEEQVDKNIEGISKQMHN  108 (323)
T ss_dssp             CCSSSSCBHHHHHHHHH----HHHHHHTT-----CEEEEEECTTGGGTCCCTTCS-SCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccccHHHHHHHHH----HHHHHHhC-----CceEEeehhhhhhccCCCccc-hhhhhhhHHHHHHHHhhhhhhhhh
Confidence            48886 99999998643    46667788     887766553  3356655221 122222356677778888888777


Q ss_pred             cC
Q psy6621          82 FG   83 (133)
Q Consensus        82 lg   83 (133)
                      +.
T Consensus       109 ~~  110 (323)
T d1jila_         109 IF  110 (323)
T ss_dssp             HS
T ss_pred             hh
Confidence            63

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.032  Score=41.11  Aligned_cols=68  Identities=7%  Similarity=-0.078  Sum_probs=37.3

Q ss_pred             CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCC--h-HHHHHHHHHHHHHHHHh
Q psy6621           5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGID--P-REWTVGNIATMKSQLQG   81 (133)
Q Consensus         5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~--~-~~~~~~~~~~~~~~l~~   81 (133)
                      -|||.+||||..+.+.   +.++++ .|     ++|.+..|-.+. .     .-....+  . ....+.+...+...+..
T Consensus        40 ~PTg~lHlG~~l~~~~---l~~~q~-~g-----~~~~~~IaD~~a-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a  104 (339)
T d1n3la_          40 ATTGKPHVAYFVPMSK---IADFLK-AG-----CEVTILFADLHA-Y-----LDNMKAPWELLELRVSYYENVIKAMLES  104 (339)
T ss_dssp             CCSSCCBGGGHHHHHH---HHHHHH-TT-----CEEEEEECHHHH-H-----HTTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHH---HHHHHH-CC-----CcEEEEecchhh-h-----ccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            4899999999988543   445444 68     887755543221 0     0000001  0 12233444556667777


Q ss_pred             cCcccc
Q psy6621          82 FGCKFN   87 (133)
Q Consensus        82 lgi~~d   87 (133)
                      +|+..+
T Consensus       105 ~g~d~~  110 (339)
T d1n3la_         105 IGVPLE  110 (339)
T ss_dssp             HTCCCT
T ss_pred             hccChH
Confidence            887654